Citrus Sinensis ID: 035122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHRFSGLLNIRVCFCIVFSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHccccEEEEccccccccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEcccHHHccccccccccccHHHcccccccHHHHHHHHHHHHHHEEEEEEccccccccEEEEEEEEEEEc
Coil and Loop (DISEMBL)
MGKVHGSlaragkvrgqtpkvakqdkkkrprgraykrmqynrrfVTAGQLIISHRFSGLLNIRVCFCIVFSV
Flexible Loop (DISEMBL)
mgkvhgslaragkvrgqtpkvakqdkkkrprgraykrmqynrrfVTAGQLIISHrfsgllniRVCFCIVFSV
Low Complexity Region (SEG)
MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHRFSGLLNIRVCFCIVFSV
Disordered region (IsUnstruct)
************************************RMQYNRRFVTAGQLIISHRFSGLLNIRVCFCIVF**
Disordered Region (DISOPRED)
******S*AR***************************MQYNRRFVTAG************NIRVCFCIVFSV
Disordered Region (DISEMBL)
*********************************AYKRMQYNRRFVTAGQLIISHRFSGLLNIRVCFCIVFSV
Disordered Region (DISPRO)
******************************RGRAYKRMQYNRRFVTAGQLIISHRFSGLLNIRVCFCIVFSV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHRFSGLLNIRVCFCIVFSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
O42952	61	40S ribosomal protein S30	yes	no	0.708	0.836	0.686	2e-13
P49689	62	40S ribosomal protein S30	yes	no	0.652	0.758	0.914	5e-12
O96269	58	40S ribosomal protein S30	yes	no	0.666	0.827	0.75	2e-11
Q9W6Y0	59	40S ribosomal protein S30	N/A	no	0.611	0.745	0.704	7e-09
P0CX34	63	40S ribosomal protein S30	yes	no	0.638	0.730	0.717	2e-08
P0CX33	63	40S ribosomal protein S30	yes	no	0.638	0.730	0.717	2e-08
P62864	59	40S ribosomal protein S30	no	no	0.611	0.745	0.840	6e-08
P0C2F0	59	40S ribosomal protein S30	no	no	0.611	0.745	0.840	6e-08
P62863	59	40S ribosomal protein S30	no	no	0.611	0.745	0.840	6e-08
P62867	59	40S ribosomal protein S30	N/A	no	0.611	0.745	0.840	6e-08

>sp|O42952|RS30_SCHPO 40S ribosomal protein S30 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps30a PE=3 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 42/51 (82%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLI 51
          MGKVHGSLARAGKV+ QTPKV KQ+K K+P+GRAYKR+ Y RRFV    ++
Sbjct: 1  MGKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMV 51

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P49689|RS30_ARATH 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 47/47 (100%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
          MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KR+Q+NRRFVTA
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTA 47

Arabidopsis thaliana (taxid: 3702)

>sp|O96269|RS30_PLAF7 40S ribosomal protein S30 OS=Plasmodium falciparum (isolate 3D7) GN=RPS30 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 37/48 (77%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAG 48
          MGKVHGSLARAGKV+ QTPKV K DKKKR  GRA KR  YNRRF   G
Sbjct: 1  MGKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSDNG 48

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 OS=Oryzias latipes GN=fau PE=3 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          KVHGSLARAGKVRGQTP V K ++K+   GRA +R+QYNRRFV 
Sbjct: 1  KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVN 44

Oryzias latipes (taxid: 8090)

>sp|P0CX34|RS30B_YEAST 40S ribosomal protein S30-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS30B PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          M KVHGSLARAGKV+ QTPKV K +K K+P+GRAYKR+ Y RRFV 
Sbjct: 1  MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVN 46

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P0CX33|RS30A_YEAST 40S ribosomal protein S30-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS30A PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          M KVHGSLARAGKV+ QTPKV K +K K+P+GRAYKR+ Y RRFV 
Sbjct: 1  MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVN 46

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P62864|RS30_RAT 40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 40/44 (90%)

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44

Rattus norvegicus (taxid: 10116)

>sp|P0C2F0|RS30_PONAB 40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 40/44 (90%)

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44

Pongo abelii (taxid: 9601)

>sp|P62863|RS30_PIG 40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 40/44 (90%)

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44

Sus scrofa (taxid: 9823)

>sp|P62867|RS30_MUSSI 40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 40/44 (90%)

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV 
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44

Mus spicilegus (taxid: 10103)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
357476845	62	40S ribosomal protein S30 [Medicago trun	0.652	0.758	0.957	3e-17
357125116	62	PREDICTED: 40S ribosomal protein S30-lik	0.652	0.758	0.936	1e-16
224286923	62	unknown [Picea sitchensis]	0.652	0.758	0.914	2e-16
326500550	69	predicted protein [Hordeum vulgare subsp	0.638	0.666	0.934	6e-16
159486879	62	ribosomal protein S30, component of cyto	0.638	0.741	0.891	1e-14
303278848	270	ribosomal protein [Micromonas pusilla CC	0.638	0.170	0.869	2e-14
255078904	281	predicted protein [Micromonas sp. RCC299	0.638	0.163	0.869	3e-14
145349279	62	Ribosomal protein S30, component of cyto	0.638	0.741	0.826	5e-14
256073239	135	40S ribosomal protein S30 [Schistosoma m	0.666	0.355	0.812	8e-14
226476164	131	small subunit ribosomal protein S30e [Sc	0.666	0.366	0.791	2e-13

>gi|357476845|ref|XP_003608708.1| 40S ribosomal protein S30 [Medicago truncatula] gi|357482045|ref|XP_003611308.1| 40S ribosomal protein S30 [Medicago truncatula] gi|355509763|gb|AES90905.1| 40S ribosomal protein S30 [Medicago truncatula] gi|355512643|gb|AES94266.1| 40S ribosomal protein S30 [Medicago truncatula]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 47/47 (100%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
          MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KRMQYNRRFVTA
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRMQYNRRFVTA 47

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125116|ref|XP_003564241.1| PREDICTED: 40S ribosomal protein S30-like [Brachypodium distachyon] gi|357137539|ref|XP_003570358.1| PREDICTED: 40S ribosomal protein S30-like [Brachypodium distachyon] gi|326525289|dbj|BAK07914.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 47/47 (100%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
          MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KR+QYNRRFVTA
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTA 47

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224286923|gb|ACN41164.1| unknown [Picea sitchensis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/47 (91%), Positives = 46/47 (97%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
          M KVHGSLARAGKVRGQTPKVAKQDKK++PRGRA+KRMQYNRRFVTA
Sbjct: 1  MSKVHGSLARAGKVRGQTPKVAKQDKKEKPRGRAHKRMQYNRRFVTA 47

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326500550|dbj|BAK06364.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 46/46 (100%)

Query: 2  GKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
          GKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KR+QYNRRFVTA
Sbjct: 9  GKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTA 54

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|159486879|ref|XP_001701464.1| ribosomal protein S30, component of cytosolic 80S ribosome and 40S small subunit [Chlamydomonas reinhardtii] gi|302855669|ref|XP_002959318.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] gi|158271646|gb|EDO97461.1| ribosomal protein S30 [Chlamydomonas reinhardtii] gi|300255282|gb|EFJ39611.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 43/46 (93%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          MGKVHGSLARAGKVRGQTPKV KQ+KKKRPRGRA KRM+YNRRFV 
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVPKQEKKKRPRGRAMKRMKYNRRFVN 46

Source: Chlamydomonas reinhardtii

Species: Chlamydomonas reinhardtii

Genus: Chlamydomonas

Family: Chlamydomonadaceae

Order: Chlamydomonadales

Class: Chlorophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|303278848|ref|XP_003058717.1| ribosomal protein [Micromonas pusilla CCMP1545] gi|226459877|gb|EEH57172.1| ribosomal protein [Micromonas pusilla CCMP1545]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 43/46 (93%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          MGKVHGSLARAGKVRGQTPKVAKQDKKK P+GRA KR++YNRRFV 
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKLPKGRAIKRLKYNRRFVN 46

Source: Micromonas pusilla CCMP1545

Species: Micromonas pusilla

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|255078904|ref|XP_002503032.1| predicted protein [Micromonas sp. RCC299] gi|226518298|gb|ACO64290.1| predicted protein [Micromonas sp. RCC299]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 43/46 (93%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          MGKVHGSLARAGKVRGQTPKVAKQDKKK P+GRA KR++YNRRFV 
Sbjct: 13 MGKVHGSLARAGKVRGQTPKVAKQDKKKVPKGRAGKRIKYNRRFVN 58

Source: Micromonas sp. RCC299

Species: Micromonas sp. RCC299

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|145349279|ref|XP_001419064.1| Ribosomal protein S30, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901] gi|144579295|gb|ABO97357.1| Ribosomal protein S30, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901]

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 45/46 (97%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          MGKVHGSLARAGKVRGQTPKVAKQ+KKK+P+GRA++R++YNRRFV 
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQEKKKQPKGRAFQRIKYNRRFVN 46

Source: Ostreococcus lucimarinus CCE9901

Species: Ostreococcus 'lucimarinus'

Genus: Ostreococcus

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|256073239|ref|XP_002572939.1| 40S ribosomal protein S30 [Schistosoma mansoni] gi|353230958|emb|CCD77375.1| putative 40s ribosomal protein S30 [Schistosoma mansoni]

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/48 (81%), Positives = 42/48 (87%)

Query: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQ 49
           GKVHGSLARAGKVRGQTPKV KQ+KKK PRGRA +RMQYN+RFV   Q
Sbjct: 72  GKVHGSLARAGKVRGQTPKVEKQEKKKSPRGRAKRRMQYNKRFVAVVQ 119

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|226476164|emb|CAX77933.1| small subunit ribosomal protein S30e [Schistosoma japonicum]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQ 49
           GKVHGSLARAGKVRGQTPKV KQ+K+K PRGRA +RMQYN+RFV   Q
Sbjct: 72  GKVHGSLARAGKVRGQTPKVEKQEKRKSPRGRAKRRMQYNKRFVAVVQ 119

Source: Schistosoma japonicum

Species: Schistosoma japonicum

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2051985	62	AT2G19750 [Arabidopsis thalian	0.652	0.758	0.914	6.5e-19
TAIR|locus:2118244	62	AT4G29390 [Arabidopsis thalian	0.652	0.758	0.914	6.5e-19
TAIR|locus:2164986	62	AT5G56670 [Arabidopsis thalian	0.652	0.758	0.914	6.5e-19
UNIPROTKB|H7BWV9	133	H7BWV9 "Uncharacterized protei	0.611	0.330	0.863	1.3e-15
UNIPROTKB|E2RC86	133	FAU "Uncharacterized protein"	0.611	0.330	0.863	1.3e-15
UNIPROTKB|E9PR30	98	FAU "40S ribosomal protein S30	0.611	0.448	0.863	1.3e-15
UNIPROTKB|F1RQU9	133	FAU "Ubiquitin-like protein FU	0.611	0.330	0.863	1.3e-15
UNIPROTKB|P62866	59	FAU "40S ribosomal protein S30	0.597	0.728	0.860	5.4e-15
UNIPROTKB|P62861	59	FAU "40S ribosomal protein S30	0.597	0.728	0.860	5.4e-15
UNIPROTKB|P62863	59	FAU "40S ribosomal protein S30	0.597	0.728	0.860	5.4e-15

TAIR|locus:2051985 AT2G19750 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 43/47 (91%), Positives = 47/47 (100%)

Query:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
             MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KR+Q+NRRFVTA
Sbjct:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTA 47

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

TAIR|locus:2118244 AT4G29390 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 43/47 (91%), Positives = 47/47 (100%)

Query:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
             MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KR+Q+NRRFVTA
Sbjct:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTA 47

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2164986 AT5G56670 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 43/47 (91%), Positives = 47/47 (100%)

Query:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
             MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KR+Q+NRRFVTA
Sbjct:     1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTA 47

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|H7BWV9 H7BWV9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/44 (86%), Positives = 41/44 (93%)

Query:     2 GKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
             GKVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV
Sbjct:    74 GKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFV 117

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RC86 FAU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/44 (86%), Positives = 41/44 (93%)

Query:     2 GKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
             GKVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV
Sbjct:    74 GKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFV 117

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E9PR30 FAU "40S ribosomal protein S30" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/44 (86%), Positives = 41/44 (93%)

Query:     2 GKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
             GKVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV
Sbjct:    39 GKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFV 82

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1RQU9 FAU "Ubiquitin-like protein FUBI" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/44 (86%), Positives = 41/44 (93%)

Query:     2 GKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
             GKVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV
Sbjct:    74 GKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFV 117

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62866 FAU "40S ribosomal protein S30" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 37/43 (86%), Positives = 40/43 (93%)

Query:     3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
             KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV
Sbjct:     1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFV 43

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62861 FAU "40S ribosomal protein S30" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 37/43 (86%), Positives = 40/43 (93%)

Query:     3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
             KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV
Sbjct:     1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFV 43

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0015935 "small ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|P62863 FAU "40S ribosomal protein S30" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 37/43 (86%), Positives = 40/43 (93%)

Query:     3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
             KVHGSLARAGKVRGQTPKVAKQ+KKK+  GRA +RMQYNRRFV
Sbjct:     1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFV 43

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q556Y1	RS30_DICDI	No assigned EC number	0.6382	0.6527	0.7121	yes	no
O96269	RS30_PLAF7	No assigned EC number	0.75	0.6666	0.8275	yes	no
P62867	RS30_MUSSI	No assigned EC number	0.8409	0.6111	0.7457	N/A	no
Q9W6Y0	RS30_ORYLA	No assigned EC number	0.7045	0.6111	0.7457	N/A	no
P0CX34	RS30B_YEAST	No assigned EC number	0.7173	0.6388	0.7301	yes	no
P0CX33	RS30A_YEAST	No assigned EC number	0.7173	0.6388	0.7301	yes	no
P49689	RS30_ARATH	No assigned EC number	0.9148	0.6527	0.7580	yes	no
O42952	RS30_SCHPO	No assigned EC number	0.6862	0.7083	0.8360	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	BRADI1G48060.1	annotation not avaliable (62 aa)
		(Brachypodium distachyon)
Predicted Functional Partners:
	BRADI1G51650.1	annotation not avaliable (127 aa)				•	•	•	•		0.973
	BRADI3G29060.1	annotation not avaliable (145 aa)				•	•	•	•		0.971
	BRADI2G54210.1	annotation not avaliable (142 aa)				•	•	•	•		0.955
	BRADI2G35620.1	annotation not avaliable (265 aa)				•	•	•			0.950
	BRADI2G06250.1	annotation not avaliable (157 aa)				•	•	•			0.929
	BRADI1G30210.1	annotation not avaliable (137 aa)				•	•	•	•		0.928
	BRADI2G28170.2	annotation not avaliable (60 aa)				•	•	•			0.923
	BRADI1G27330.1	annotation not avaliable (216 aa)				•	•	•	•		0.920
	BRADI5G15570.1	annotation not avaliable (135 aa)				•	•	•	•		0.911
	BRADI3G13750.1	annotation not avaliable (110 aa)				•		•			0.894

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
pfam04758	53	pfam04758, Ribosomal_S30, Ribosomal protein S30	6e-21
PTZ00467	66	PTZ00467, PTZ00467, 40S ribosomal protein S30; Pro	3e-16
PRK09336	50	PRK09336, PRK09336, 30S ribosomal protein S30e; Pr	7e-08
COG4919	54	COG4919, COG4919, Ribosomal protein S30 [Translati	1e-05

>gnl|CDD|218248 pfam04758, Ribosomal_S30, Ribosomal protein S30

 Score = 76.6 bits (189), Expect = 6e-21
 Identities = 36/45 (80%), Positives = 39/45 (86%)

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
          KVHGSLARAGKVR QTPKV KQ+KKK+P GRA KR+QYNRRFV  
Sbjct: 1  KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNV 45

Length = 53

>gnl|CDD|185646 PTZ00467, PTZ00467, 40S ribosomal protein S30; Provisional

 Score = 65.2 bits (158), Expect = 3e-16
 Identities = 34/45 (75%), Positives = 41/45 (91%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
          MGK+HGSLARAGKV+ QTPKVAKQ+K K+PRGRA KR++Y RRF+
Sbjct: 1  MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFL 45

Length = 66

>gnl|CDD|181786 PRK09336, PRK09336, 30S ribosomal protein S30e; Provisional

 Score = 43.6 bits (103), Expect = 7e-08
 Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 5  HGSLARAGKVRGQTPKV-AKQDKKKRPRGRAYKRMQYNRRFVTAGQ 49
          HGSL +AGKVR QTPK+  K  K + PR R   R +Y RR + A Q
Sbjct: 4  HGSLTKAGKVRSQTPKIPPKPKKNEVPRVR--NRREYERRVLKARQ 47

Length = 50

>gnl|CDD|227256 COG4919, COG4919, Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]

 Score = 38.5 bits (89), Expect = 1e-05
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 5  HGSLARAGKVRGQTPKV-AKQDKKKRPRGRAYKRMQYNRRFVTAGQ 49
          HGSL +AGKVR QTPK+ AKQ K   PR R   R++Y  R   A  
Sbjct: 4  HGSLTKAGKVRKQTPKIPAKQKKNYPPRLR--NRLKYQVRVEKAAS 47

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG0009	62	consensus Ubiquitin-like/40S ribosomal S30 protein	99.97
PTZ00467	66	40S ribosomal protein S30; Provisional	99.96
PF04758	59	Ribosomal_S30: Ribosomal protein S30; InterPro: IP	99.95
PRK09336	50	30S ribosomal protein S30e; Provisional	99.93
COG4919	54	Ribosomal protein S30 [Translation, ribosomal stru	99.7

>KOG0009 consensus Ubiquitin-like/40S ribosomal S30 protein fusion [Translation, ribosomal structure and biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-31  Score=168.22  Aligned_cols=57  Identities=70%  Similarity=0.940  Sum_probs=54.9

Q ss_pred             CCceecccccCCcccCCCCCcccccccCCCChhhhhhhhhchheeecchhhhhcccc
Q 035122            1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHRFS   57 (72)
Q Consensus         1 mGKvHGSLarAGKVR~QTPKV~KqeKkk~~~GRak~R~qYnrRfvnv~~t~~~~r~~   57 (72)
                      |||||||||+|||||+||||||+|||+|+++|||++|+|||+||+|++..|+..|+-
T Consensus         1 ~gkvhgslarAGKVr~QTPKv~kqeK~kkk~GRa~~Rlqy~rR~vn~~~~~g~Kr~~   57 (62)
T KOG0009|consen    1 MGKVHGSLARAGKVRGQTPKVEKQEKKKKKRGRAKKRLQYNRRFVNVVFGVGGKRGP   57 (62)
T ss_pred             CCceeeehhhcccccccCCcchhhhhcccccchHHHHhhhheeeEEeeeccccccCC
Confidence            899999999999999999999999999999999999999999999999999988763

>PTZ00467 40S ribosomal protein S30; Provisional

Probab=99.96  E-value=3.3e-31  Score=167.62  Aligned_cols=55  Identities=62%  Similarity=0.917  Sum_probs=52.9

Q ss_pred             CCceecccccCCcccCCCCCcccccccCCCChhhhhhhhhchheeecchhhhhcc
Q 035122            1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHR   55 (72)
Q Consensus         1 mGKvHGSLarAGKVR~QTPKV~KqeKkk~~~GRak~R~qYnrRfvnv~~t~~~~r   55 (72)
                      |||||||||+||||++||||||++||+|.++|||++|+|||+||+|++.+++..|
T Consensus         1 mgKvHGSLarAGKVr~QTPkv~k~eKkk~~~gRA~~R~qYnrRfv~~~~~~g~kr   55 (66)
T PTZ00467          1 MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEKV   55 (66)
T ss_pred             CcchhhhhhhcccccCCCCCchhhhcccCCCchHHHHHHHHhhhhhccccCCccc
Confidence            9999999999999999999999999999999999999999999999999988665

>PF04758 Ribosomal_S30: Ribosomal protein S30; InterPro: IPR006846 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.95  E-value=2.2e-30  Score=160.69  Aligned_cols=54  Identities=69%  Similarity=0.948  Sum_probs=49.4

Q ss_pred             ceecccccCCcccCCCCCcccccccCCCChhhhhhhhhchheeecchhhhhccc
Q 035122            3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHRF   56 (72)
Q Consensus         3 KvHGSLarAGKVR~QTPKV~KqeKkk~~~GRak~R~qYnrRfvnv~~t~~~~r~   56 (72)
                      |||||||+|||||+||||||++||++.++|||++|++||+||++++++|+.+++
T Consensus         1 KvHGSLarAGKVR~QTPKV~k~~k~k~~~gRak~R~~Y~rRfv~~~~~~g~k~~   54 (59)
T PF04758_consen    1 KVHGSLARAGKVRGQTPKVEKQEKKKKPTGRAKKRIQYNRRFVNVVPTFGKKKG   54 (59)
T ss_dssp             HHCCCCTTTTHHHHHSSSSS--HHHHHHHCHHHHHHHHHHHCSTTHHHSCTTTT
T ss_pred             CcccchhhcccccccCCCcCccccccCCchhHHHHHhhhhheeeecccCCCccC
Confidence            799999999999999999999999888999999999999999999999997665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry is for the ribosomal protein S30.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_X 2XZM_X 3IZB_Z 3U5G_e 3U5C_e 3J16_E 3IZ6_Z.

>PRK09336 30S ribosomal protein S30e; Provisional

Probab=99.93  E-value=5.1e-27  Score=141.93  Aligned_cols=48  Identities=48%  Similarity=0.689  Sum_probs=44.0

Q ss_pred             CCceecccccCCcccCCCCCcccccccCCCChhhhhhhhhchheeecchh
Q 035122            1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQL   50 (72)
Q Consensus         1 mGKvHGSLarAGKVR~QTPKV~KqeKkk~~~GRak~R~qYnrRfvnv~~t   50 (72)
                      |+ +|||||+||||++||||||++||+++ +|||++|++||+||+|+.++
T Consensus         1 m~-~HGSLarAGKVr~qTPkv~k~ekkk~-~gra~~R~qynrRf~~~~~~   48 (50)
T PRK09336          1 MP-SHGSLTKAGKVRSQTPKIPPKPKKNE-VPRVRNRREYERRVLKARQQ   48 (50)
T ss_pred             CC-cchhhhhcccccCCCCCcchhhhccC-CchhHHHHHHHHHHhhhhcc
Confidence            44 89999999999999999999998765 79999999999999999864

>COG4919 Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=2.8e-18  Score=105.45  Aligned_cols=46  Identities=43%  Similarity=0.622  Sum_probs=43.0

Q ss_pred             eecccccCCcccCCCCCcccccccCCCChhhhhhhhhchheeecchh
Q 035122            4 VHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQL   50 (72)
Q Consensus         4 vHGSLarAGKVR~QTPKV~KqeKkk~~~GRak~R~qYnrRfvnv~~t   50 (72)
                      +|||||+|||||+||||++.++|++ .++|.+||.+|.+|++.+.++
T Consensus         3 sHGSLTKAGKVR~QTPkipaK~kkn-~~PR~rNr~~Y~~Rv~ka~sq   48 (54)
T COG4919           3 SHGSLTKAGKVRKQTPKIPAKQKKN-YPPRLRNRLKYQVRVEKAASQ   48 (54)
T ss_pred             CccccccccchhccCCCCCcccccc-CChhHHHHHHHHHHHHHHHhc
Confidence            6999999999999999999999988 589999999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
3zey_Y	66	High-resolution Cryo-electron Microscopy Structure		3e-14
3iz6_Z	62	Localization Of The Small Subunit Ribosomal Protein		5e-14
2xzm_X	80	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-11
3izb_Z	63	Localization Of The Small Subunit Ribosomal Protein		2e-09
3j0l_X	68	Core Of Mammalian 80s Pre-Ribosome In Complex With		4e-08

>pdb|3ZEY|Y Chain Y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 66

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 43/45 (95%)
Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
          MGKVHGSLARAGKV+ QTPKV+KQ+KKK+PRGRA+KR++Y +R++
Sbjct: 1  MGKVHGSLARAGKVKNQTPKVSKQEKKKQPRGRAFKRLKYTQRYL 45

>pdb|3IZ6|Z Chain Z, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 62

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 47/47 (100%)
Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
          MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KRMQYNRRFVTA
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA 47

>pdb|2XZM|X Chain X, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 80

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDK-KKRPRGRAYKRMQYNRRFV 45
          MG++HG+LA+AGKVR QTPKV K+DK +K P+GR+YKR+ YNRR+ 
Sbjct: 1  MGRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYA 46

>pdb|3IZB|Z Chain Z, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 63

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
          M KVHGSLARAGKV+ QTPKV K +K K+P+GRAYKR+ Y RRFV 
Sbjct: 1  MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVN 46

>pdb|3J0L|X Chain X, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 68

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 34/40 (85%), Gaps = 1/40 (2%)
Query: 7  SLARAGKVRGQTPKVAKQDK-KKRPRGRAYKRMQYNRRFV 45
          +LA+AGKVR QTPKV K+DK +K P+GR+YKR+ YNRR+ 
Sbjct: 1  TLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYA 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
3u5c_E	261	RP5, S7, YS6, 40S ribosomal protein S4-A; translat	5e-18
3iz6_Z	62	40S ribosomal protein S30 (S30E); eukaryotic ribos	3e-17
2xzm_X	80	RPS30E; ribosome, translation; 3.93A {Tetrahymena	2e-16

>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E Length = 261

 Score = 69.3 bits (169), Expect = 5e-18
 Identities = 1/45 (2%), Positives = 8/45 (17%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
          M +      +                          +++ +   +
Sbjct: 1  MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLI 45

>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 62

 Score = 67.0 bits (163), Expect = 3e-17
 Identities = 45/47 (95%), Positives = 47/47 (100%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
          MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KRMQYNRRFVTA
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA 47

>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X Length = 80

 Score = 65.6 bits (159), Expect = 2e-16
 Identities = 30/46 (65%), Positives = 40/46 (86%), Gaps = 1/46 (2%)

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDK-KKRPRGRAYKRMQYNRRFV 45
          MG++HG+LA+AGKVR QTPKV K+DK +K P+GR+YKR+ YNRR+ 
Sbjct: 1  MGRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYA 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
3u5c_e	63	40S ribosomal protein S30-A, 40S ribosomal protein	99.98
3iz6_Z	62	40S ribosomal protein S30 (S30E); eukaryotic ribos	99.97
2xzm_X	80	RPS30E; ribosome, translation; 3.93A {Tetrahymena	99.96
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	96.32

>3u5c_e 40S ribosomal protein S30-A, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Z* 3j16_E 3u5g_e

Probab=99.98  E-value=1.7e-34  Score=180.37  Aligned_cols=57  Identities=60%  Similarity=0.930  Sum_probs=53.1

Q ss_pred             CCceecccccCCcccCCCCCcccccccCCCChhhhhhhhhchheeecchhhhhcccc
Q 035122            1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHRFS   57 (72)
Q Consensus         1 mGKvHGSLarAGKVR~QTPKV~KqeKkk~~~GRak~R~qYnrRfvnv~~t~~~~r~~   57 (72)
                      |||||||||+|||||+||||||++||+++++|||++|++||+||+|++++|+.++..
T Consensus         1 mgKvHGSLarAGKVR~QTPKV~k~eKkk~~~gRak~R~~YnrRfvnv~~~~gkrk~~   57 (63)
T 3u5c_e            1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRRMN   57 (63)
T ss_dssp             -CCCBCCCTTTTHHHHHSCCCCCCCCCCCCCTHHHHHHHHHHHHTSCCCCSSSCCSS
T ss_pred             CCcccchhhhcccccCCCCCCcccccccCCchhHHHHHHhhhhheeecccCCcccCC
Confidence            999999999999999999999999999999999999999999999999999966543

>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=5.8e-35  Score=182.08  Aligned_cols=57  Identities=81%  Similarity=1.039  Sum_probs=54.9

Q ss_pred             CCceecccccCCcccCCCCCcccccccCCCChhhhhhhhhchheeecchhhhhcccc
Q 035122            1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHRFS   57 (72)
Q Consensus         1 mGKvHGSLarAGKVR~QTPKV~KqeKkk~~~GRak~R~qYnrRfvnv~~t~~~~r~~   57 (72)
                      |||||||||+|||||+||||||+|||+|+++|||++|++||+||+|++++|+.+|+-
T Consensus         1 mGKvHGSLarAGKVR~QTPKV~kqeKkk~~~gRak~R~~YnrRfvnv~~~~g~kr~~   57 (62)
T 3iz6_Z            1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP   57 (62)
T ss_dssp             CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHCCCCCCSCHHHHHHTTTCC
T ss_pred             CCcccchhhccccccCCCCCcchhhhccCCchHHHHHHHhhhhhhhcccccCCccCC
Confidence            999999999999999999999999998889999999999999999999999998864

>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X

Probab=99.96  E-value=8.8e-32  Score=174.10  Aligned_cols=61  Identities=52%  Similarity=0.782  Sum_probs=50.8

Q ss_pred             CCceecccccCCcccCCCCCccccccc-CCCChhhhhhhhhchheeecch-hhhhccccccee
Q 035122            1 MGKVHGSLARAGKVRGQTPKVAKQDKK-KRPRGRAYKRMQYNRRFVTAGQ-LIISHRFSGLLN   61 (72)
Q Consensus         1 mGKvHGSLarAGKVR~QTPKV~KqeKk-k~~~GRak~R~qYnrRfvnv~~-t~~~~r~~~~~~   61 (72)
                      |||+|||||+|||||+||||||+|||+ |.++|||++|++||+||+|+++ +|+.+|+..-.|
T Consensus         1 mGkvHGSLarAGKVR~QTPKV~kqeKk~K~~~GRak~R~~YnrRfv~~~~~~~gkrk~npn~~   63 (80)
T 2xzm_X            1 MGRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWH   63 (80)
T ss_dssp             ------CCTTTTHHHHHSCCCCCCCCSSCCCCSHHHHHHHHHHHSSTTTTTSCSSSCCCTTTC
T ss_pred             CccchhhhhccccccccCCCcchhhhcccCCchhHHHHHHHHHhhhhhcccccccccCCCCcc
Confidence            999999999999999999999999998 8899999999999999999999 999999854433

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=96.32  E-value=0.0014  Score=46.39  Aligned_cols=25  Identities=20%  Similarity=0.093  Sum_probs=20.9

Q ss_pred             cCCcccCCCCCcccccccCCCChhhh
Q 035122           10 RAGKVRGQTPKVAKQDKKKRPRGRAY   35 (72)
Q Consensus        10 rAGKVR~QTPKV~KqeKkk~~~GRak   35 (72)
                      |+ |+..||||++++++++.+.+..+
T Consensus        75 rk-K~~~~tPK~~k~~kKkvkl~~Lk   99 (189)
T 2xzm_9           75 KK-KKSYTTKKKTKHRHVHTKLGALA   99 (189)
T ss_dssp             CC-CCCCCSSSCCCCCCCCCCCSCCC
T ss_pred             cc-ccccCCCccccccccccCCceee
Confidence            77 99999999999999877665543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00