Citrus Sinensis ID: 035160

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-
MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS
cEEEEEEEEEEEEccccccccccccEEEEEEccHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHc
cEEEEEEEEEEEccccccccccccccEEEEcccHHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEc
miiggmvldihatpsipanprtttlgkanyvlGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS
MIIGGMVLDIhatpsipanprtttlGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS
MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS
**IGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVV*
MIIGGMVLDIHATPSIPA*PRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS
MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS
MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
iiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
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MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query71
224080299 381 predicted protein [Populus trichocarpa] 0.901 0.167 0.796 2e-23
224080307 384 predicted protein [Populus trichocarpa] 0.901 0.166 0.796 8e-23
255556101 1157 pentatricopeptide repeat-containing prot 0.901 0.055 0.781 3e-22
357475207 421 Sugar kinase, putative [Medicago truncat 0.901 0.152 0.828 1e-21
356576339 390 PREDICTED: pseudouridine kinase-like [Gl 0.901 0.164 0.812 3e-21
449493040 1096 PREDICTED: putative pentatricopeptide re 0.929 0.060 0.712 5e-21
449461160 1096 PREDICTED: LOW QUALITY PROTEIN: putative 0.929 0.060 0.712 5e-21
225427804 426 PREDICTED: pseudouridine kinase [Vitis v 0.887 0.147 0.777 1e-20
147799724 224 hypothetical protein VITISV_031685 [Viti 0.845 0.267 0.8 1e-20
326531006 434 predicted protein [Hordeum vulgare subsp 0.957 0.156 0.617 2e-17
>gi|224080299|ref|XP_002306088.1| predicted protein [Populus trichocarpa] gi|222849052|gb|EEE86599.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 58/64 (90%)

Query: 1  MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60
          ++IGGMVLDIHATPS+P NPRTTT GK +YVLGGVARN+AECMSKLG KPYMISALG DM
Sbjct: 3  VVIGGMVLDIHATPSLPLNPRTTTPGKVHYVLGGVARNIAECMSKLGTKPYMISALGNDM 62

Query: 61 VGDF 64
           G++
Sbjct: 63 AGNY 66

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224080307|ref|XP_002306090.1| predicted protein [Populus trichocarpa] gi|222849054|gb|EEE86601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556101|ref|XP_002519085.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541748|gb|EEF43296.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357475207|ref|XP_003607889.1| Sugar kinase, putative [Medicago truncatula] gi|85719355|gb|ABC75360.1| Carbohydrate kinase, PfkB [Medicago truncatula] gi|355508944|gb|AES90086.1| Sugar kinase, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|356576339|ref|XP_003556290.1| PREDICTED: pseudouridine kinase-like [Glycine max] Back     alignment and taxonomy information
>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g18840-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225427804|ref|XP_002275430.1| PREDICTED: pseudouridine kinase [Vitis vinifera] gi|297744710|emb|CBI37972.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147799724|emb|CAN63901.1| hypothetical protein VITISV_031685 [Vitis vinifera] Back     alignment and taxonomy information
>gi|326531006|dbj|BAK04854.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query71
TAIR|locus:2010187 378 AT1G49350 [Arabidopsis thalian 0.830 0.156 0.525 6.5e-11
TIGR_CMR|CHY_0076 364 CHY_0076 "kinase, PfkB family" 0.887 0.173 0.349 1.7e-05
UNIPROTKB|F1P1N5 677 Gga.26687 "Uncharacterized pro 0.830 0.087 0.377 6.9e-05
ZFIN|ZDB-GENE-060421-6632 700 zgc:136858 "zgc:136858" [Danio 0.887 0.09 0.390 0.00015
UNIPROTKB|P30235 313 psuK [Escherichia coli K-12 (t 0.873 0.198 0.338 0.00027
TAIR|locus:2010187 AT1G49350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 158 (60.7 bits), Expect = 6.5e-11, P = 6.5e-11
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query:     1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 59
             +IIG ++LD+HA PS      TT  G+  +  GGVARNVA+C+ KLG  P+MI  LGLD
Sbjct:     4 VIIGALILDVHAKPSTTPISGTTVPGQVLFAPGGVARNVADCIFKLGITPFMIGTLGLD 62
GO:0004747 "ribokinase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006014 "D-ribose metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
TIGR_CMR|CHY_0076 CHY_0076 "kinase, PfkB family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1N5 Gga.26687 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060421-6632 zgc:136858 "zgc:136858" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P30235 psuK [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.IV.431.1
hypothetical protein (381 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.I.807.1
hypothetical protein (315 aa)
• •     0.625

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query71
cd01941 288 cd01941, YeiC_kinase_like, YeiC-like sugar kinase 5e-14
COG0524 311 COG0524, RbsK, Sugar kinases, ribokinase family [C 1e-05
PRK09850 313 PRK09850, PRK09850, pseudouridine kinase; Provisio 4e-05
cd01167 295 cd01167, bac_FRK, Fructokinases (FRKs) mainly from 1e-04
pfam00294 298 pfam00294, PfkB, pfkB family carbohydrate kinase 4e-04
PRK09954 362 PRK09954, PRK09954, putative kinase; Provisional 5e-04
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase Back     alignment and domain information 
 Score = 63.5 bits (155), Expect = 5e-14
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 2  IIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMV 61
          +IG   +D+    S    P T+  G      GGV RN+AE +++LG    ++SA+G D  
Sbjct: 4  VIGAANIDLRGKVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSE 63

Query: 62 GDF 64
          G+ 
Sbjct: 64 GES 66

Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time. Length = 288
>gnl|CDD|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|182111 PRK09850, PRK09850, pseudouridine kinase; Provisional Back     alignment and domain information
>gnl|CDD|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate Back     alignment and domain information
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase Back     alignment and domain information
>gnl|CDD|182165 PRK09954, PRK09954, putative kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 71
PRK09954 362 putative kinase; Provisional 99.75
cd01947 265 Guanosine_kinase_like Guanosine kinase-like sugar 99.74
PRK09850 313 pseudouridine kinase; Provisional 99.74
PRK11142 306 ribokinase; Provisional 99.73
cd01939 290 Ketohexokinase Ketohexokinase (fructokinase, KHK) 99.73
cd01944 289 YegV_kinase_like YegV-like sugar kinase. Found onl 99.71
KOG2855 330 consensus Ribokinase [Carbohydrate transport and m 99.71
PTZ00292 326 ribokinase; Provisional 99.7
cd01174 292 ribokinase Ribokinase catalyses the phosphorylatio 99.7
cd01941 288 YeiC_kinase_like YeiC-like sugar kinase. Found in 99.7
cd01945 284 ribokinase_group_B Ribokinase-like subgroup B. Fou 99.69
cd01942 279 ribokinase_group_A Ribokinase-like subgroup A. Fou 99.68
cd01168 312 adenosine_kinase Adenosine kinase (AK) catalyzes t 99.68
PLN02813 426 pfkB-type carbohydrate kinase family protein 99.63
PTZ00247 345 adenosine kinase; Provisional 99.63
PF00294 301 PfkB: pfkB family carbohydrate kinase; InterPro: I 99.62
COG0524 311 RbsK Sugar kinases, ribokinase family [Carbohydrat 99.61
cd01164 289 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 99.6
PLN02341 470 pfkB-type carbohydrate kinase family protein 99.6
TIGR02152 293 D_ribokin_bact ribokinase. This model describes ri 99.6
PLN02967 581 kinase 99.59
PLN02323 330 probable fructokinase 99.58
cd01166 294 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho 99.57
cd01172 304 RfaE_like RfaE encodes a bifunctional ADP-heptose 99.56
cd01167 295 bac_FRK Fructokinases (FRKs) mainly from bacteria 99.55
TIGR03828 304 pfkB 1-phosphofructokinase. This enzyme acts in co 99.55
PLN02543 496 pfkB-type carbohydrate kinase family protein 99.54
PRK11316 473 bifunctional heptose 7-phosphate kinase/heptose 1- 99.54
TIGR02198 315 rfaE_dom_I rfaE bifunctional protein, domain I. Rf 99.53
PRK09813 260 fructoselysine 6-kinase; Provisional 99.5
cd01940 264 Fructoselysine_kinase_like Fructoselysine kinase-l 99.46
PRK09434 304 aminoimidazole riboside kinase; Provisional 99.45
TIGR03168 303 1-PFK hexose kinase, 1-phosphofructokinase family. 99.45
TIGR01231 309 lacC tagatose-6-phosphate kinase. This enzyme is p 99.43
PRK13508 309 tagatose-6-phosphate kinase; Provisional 99.43
PRK09513 312 fruK 1-phosphofructokinase; Provisional 99.42
cd01937 254 ribokinase_group_D Ribokinase-like subgroup D. Fou 99.42
cd01946 277 ribokinase_group_C Ribokinase-like subgroup C. Fou 99.37
PRK10294 309 6-phosphofructokinase 2; Provisional 99.36
cd00287 196 ribokinase_pfkB_like ribokinase/pfkB superfamily: 99.26
PRK15074 434 inosine/guanosine kinase; Provisional 99.23
cd01943 328 MAK32 MAK32 kinase. MAK32 is a protein found prima 99.21
PLN02379 367 pfkB-type carbohydrate kinase family protein 99.21
PLN02630 335 pfkB-type carbohydrate kinase family protein 99.16
PLN02548 332 adenosine kinase 99.12
COG2870 467 RfaE ADP-heptose synthase, bifunctional sugar kina 99.06
KOG3009 614 consensus Predicted carbohydrate kinase, contains 99.05
KOG2947 308 consensus Carbohydrate kinase [Carbohydrate transp 98.65
COG1105 310 FruK Fructose-1-phosphate kinase and related fruct 98.21
KOG2854 343 consensus Possible pfkB family carbohydrate kinase 98.02
>PRK09954 putative kinase; Provisional Back     alignment and domain information 
Probab=99.75  E-value=7.2e-18  Score=111.86  Aligned_cols=70  Identities=24%  Similarity=0.403  Sum_probs=62.1

Q ss_pred             CEEeceeceeEeecC-CCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160            1 MIIGGMVLDIHATPS-IPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS   71 (71)
Q Consensus         1 ~~iG~~~~D~~~~~~-~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~   71 (71)
                      +|+|++++|++++++ +.|.+++ .+.++...+||+++|+|++++|||.++.|+++||+|.+|+++++.|++
T Consensus        61 ~viG~~~vD~~~~~~~~~p~~~~-~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~  131 (362)
T PRK09954         61 VVVGAINMDIRGMADIRYPQAAS-HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRR  131 (362)
T ss_pred             EEEEEEEEEEEEeeCCcCcCCCC-CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHH
Confidence            489999999999987 4454444 566888999999999999999999999999999999999999999874

>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases Back     alignment and domain information
>PRK09850 pseudouridine kinase; Provisional Back     alignment and domain information
>PRK11142 ribokinase; Provisional Back     alignment and domain information
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose Back     alignment and domain information
>cd01944 YegV_kinase_like YegV-like sugar kinase Back     alignment and domain information
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00292 ribokinase; Provisional Back     alignment and domain information
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP Back     alignment and domain information
>cd01941 YeiC_kinase_like YeiC-like sugar kinase Back     alignment and domain information
>cd01945 ribokinase_group_B Ribokinase-like subgroup B Back     alignment and domain information
>cd01942 ribokinase_group_A Ribokinase-like subgroup A Back     alignment and domain information
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor Back     alignment and domain information
>PLN02813 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PTZ00247 adenosine kinase; Provisional Back     alignment and domain information
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases Back     alignment and domain information
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases Back     alignment and domain information
>PLN02341 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>TIGR02152 D_ribokin_bact ribokinase Back     alignment and domain information
>PLN02967 kinase Back     alignment and domain information
>PLN02323 probable fructokinase Back     alignment and domain information
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP) Back     alignment and domain information
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose Back     alignment and domain information
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate Back     alignment and domain information
>TIGR03828 pfkB 1-phosphofructokinase Back     alignment and domain information
>PLN02543 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I Back     alignment and domain information
>PRK09813 fructoselysine 6-kinase; Provisional Back     alignment and domain information
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like Back     alignment and domain information
>PRK09434 aminoimidazole riboside kinase; Provisional Back     alignment and domain information
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family Back     alignment and domain information
>TIGR01231 lacC tagatose-6-phosphate kinase Back     alignment and domain information
>PRK13508 tagatose-6-phosphate kinase; Provisional Back     alignment and domain information
>PRK09513 fruK 1-phosphofructokinase; Provisional Back     alignment and domain information
>cd01937 ribokinase_group_D Ribokinase-like subgroup D Back     alignment and domain information
>cd01946 ribokinase_group_C Ribokinase-like subgroup C Back     alignment and domain information
>PRK10294 6-phosphofructokinase 2; Provisional Back     alignment and domain information
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group Back     alignment and domain information
>PRK15074 inosine/guanosine kinase; Provisional Back     alignment and domain information
>cd01943 MAK32 MAK32 kinase Back     alignment and domain information
>PLN02379 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PLN02630 pfkB-type carbohydrate kinase family protein Back     alignment and domain information
>PLN02548 adenosine kinase Back     alignment and domain information
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only] Back     alignment and domain information
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query71
3kzh_A 328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 3e-12
2nwh_A 317 AGR_C_3442P, carbohydrate kinase; structural genom 1e-09
3bf5_A 306 Ribokinase related protein; 10640157, putative rib 1e-06
1vk4_A 298 PFKB carbohydrate kinase TM0415; structural genomi 2e-05
3h49_A 325 Ribokinase; transferase,PFKB family,sugar kinase Y 5e-05
2c4e_A 302 Sugar kinase MJ0406; transferase, nucleoside kinas 7e-05
2hlz_A 312 Ketohexokinase; non-protein kinase, creatine kinas 2e-04
3pl2_A 319 Sugar kinase, ribokinase family; PFKB PFAM motif, 2e-04
3hj6_A 327 Fructokinase, FRK; fructose, transferase, carbohyd 2e-04
3ewm_A 313 Uncharacterized sugar kinase PH1459; carbohydrate 2e-04
2qhp_A 296 Fructokinase; NP_810670.1, PFKB family carbohydrat 3e-04
3iq0_A 330 Putative ribokinase II; transferase,kinase,SAD,rib 3e-04
2qcv_A 332 Putative 5-dehydro-2-deoxygluconokinase; structura 3e-04
1tyy_A 339 Putative sugar kinase; ribokinase fold, alpha/beta 3e-04
3ljs_A 338 Fructokinase; fructokianse, PSI2, NYSGXRC, structu 5e-04
3kd6_A 313 Carbohydrate kinase, PFKB family; nucleoside kinas 5e-04
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Length = 328 Back     alignment and structure
 Score = 58.4 bits (142), Expect = 3e-12
 Identities = 20/64 (31%), Positives = 29/64 (45%)

Query: 2  IIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMV 61
          + G  V+D+         P  +T G      GGV RN+AE M+++G     +S LG D  
Sbjct: 11 VFGASVVDVFGFSKASYRPYNSTPGHVKISFGGVCRNIAENMARVGVNTNFMSILGNDEH 70

Query: 62 GDFA 65
          G   
Sbjct: 71 GKSI 74
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Length = 317 Back     alignment and structure
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Length = 306 Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Length = 298 Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Length = 325 Back     alignment and structure
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Length = 302 Back     alignment and structure
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Length = 312 Back     alignment and structure
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} Length = 319 Back     alignment and structure
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Length = 327 Back     alignment and structure
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Length = 313 Back     alignment and structure
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Length = 296 Back     alignment and structure
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A Length = 330 Back     alignment and structure
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Length = 332 Back     alignment and structure
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Length = 339 Back     alignment and structure
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} PDB: 3lki_A* Length = 338 Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Length = 313 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query71
3kzh_A 328 Probable sugar kinase; NYSGXRC, PSI-II, protein st 99.75
1vm7_A 311 Ribokinase; TM0960, structural genomics, JCSG, pro 99.75
1rkd_A 309 Ribokinase; carbohydrate kinase, ribose, nucleotid 99.74
2fv7_A 331 Ribokinase; structural genomics, structural genomi 99.74
3ikh_A 299 Carbohydrate kinase; transferase,kinase,SAD,ribose 99.74
2nwh_A 317 AGR_C_3442P, carbohydrate kinase; structural genom 99.74
3go6_A 310 Ribokinase RBSK; phosphofructokinase, carbohydrate 99.74
3ry7_A 304 Ribokinase; transferase; 2.15A {Staphylococcus aur 99.73
2hlz_A 312 Ketohexokinase; non-protein kinase, creatine kinas 99.73
2c4e_A 302 Sugar kinase MJ0406; transferase, nucleoside kinas 99.72
2rbc_A 343 Sugar kinase, AGR_C_4560P; ribokinase family, ATP- 99.71
3bf5_A 306 Ribokinase related protein; 10640157, putative rib 99.69
2ajr_A 331 Sugar kinase, PFKB family; TM0828, possible 1-phos 99.68
3ljs_A 338 Fructokinase; fructokianse, PSI2, NYSGXRC, structu 99.66
3b1n_A 326 Ribokinase, putative; rossmann fold, ATP binding, 99.64
3hj6_A 327 Fructokinase, FRK; fructose, transferase, carbohyd 99.63
2pkf_A 334 Adenosine kinase; transferase, S genomics, TB stru 99.63
3vas_A 370 Putative adenosine kinase; ribokinase, enzyme, tra 99.63
2f02_A 323 Tagatose-6-phosphate kinase; LACC, structural geno 99.63
2qcv_A 332 Putative 5-dehydro-2-deoxygluconokinase; structura 99.63
4gm6_A 351 PFKB family carbohydrate kinase; enzyme function i 99.63
3umo_A 309 6-phosphofructokinase isozyme 2; glycolysis, trans 99.62
3h49_A 325 Ribokinase; transferase,PFKB family,sugar kinase Y 99.62
3cqd_A 309 6-phosphofructokinase isozyme 2; phosphofructokina 99.62
3ie7_A 320 LIN2199 protein; phosphofructokinases, transferase 99.62
2v78_A 313 Fructokinase; transferase, PFKB family carbohydrat 99.62
2dcn_A 311 Hypothetical fructokinase; 2-keto-3-deoxygluconate 99.62
3ktn_A 346 Carbohydrate kinase, PFKB family; PFKB family,ribo 99.62
3pl2_A 319 Sugar kinase, ribokinase family; PFKB PFAM motif, 99.62
4du5_A 336 PFKB; structural genomics, PSI-biology, NEW YORK s 99.61
3ewm_A 313 Uncharacterized sugar kinase PH1459; carbohydrate 99.61
1v1a_A 309 2-keto-3-deoxygluconate kinase; ATP, structural ge 99.6
4e84_A 352 D-beta-D-heptose 7-phosphate kinase; LPS-heptose b 99.6
2jg1_A 330 Tagatose-6-phosphate kinase; phosphoryl transfer, 99.59
3iq0_A 330 Putative ribokinase II; transferase,kinase,SAD,rib 99.59
4e3a_A 352 Sugar kinase protein; structural genomics, protein 99.59
1bx4_A 345 Protein (adenosine kinase); human adenosine kinase 99.59
2jg5_A 306 Fructose 1-phosphate kinase; 1-phosphofructokinase 99.58
2abs_A 383 Adenosine kinase, AK; ribokinase fold, alpha/beta, 99.58
1tyy_A 339 Putative sugar kinase; ribokinase fold, alpha/beta 99.58
3otx_A 347 Adenosine kinase, putative; AP5A, transferase-tran 99.58
2abq_A 306 Fructose 1-phosphate kinase; dimer, structural gen 99.57
3lhx_A 319 Ketodeoxygluconokinase; structural genomics, PSI-2 99.55
4e69_A 328 2-dehydro-3-deoxygluconokinase; putative sugar kin 99.54
3kd6_A 313 Carbohydrate kinase, PFKB family; nucleoside kinas 99.52
3loo_A 365 Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad 99.52
3uq6_A 372 Adenosine kinase, putative; ribokinase, transferas 99.5
2qhp_A 296 Fructokinase; NP_810670.1, PFKB family carbohydrat 99.49
2afb_A 351 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro- 99.35
1vk4_A 298 PFKB carbohydrate kinase TM0415; structural genomi 99.18
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Back     alignment and structure
Probab=99.75  E-value=3.3e-18  Score=110.57  Aligned_cols=71  Identities=28%  Similarity=0.468  Sum_probs=66.3

Q ss_pred             CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160            1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS   71 (71)
Q Consensus         1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~   71 (71)
                      +|+|.+++|++++++.+|.++++....+...+||+++|+|++++|||.++.+++.+|+|.+|+++++.|++
T Consensus        10 ~viG~~~vD~~~~~~~~~~~g~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~   80 (328)
T 3kzh_A           10 LVFGASVVDVFGFSKASYRPYNSTPGHVKISFGGVCRNIAENMARVGVNTNFMSILGNDEHGKSIVEHSKK   80 (328)
T ss_dssp             EEECCCEEEEEEEESSCCCTTSEEEEEEEEEEECHHHHHHHHHHHTTCCEEEECEECSSHHHHHHHHHHHH
T ss_pred             EEECcEEeeeeeccCCCCCCCCCceEEEEEccCcHHHHHHHHHHHcCCCcEEEEEecCcHHHHHHHHHHHH
Confidence            58999999999999988888887777899999999999999999999999999999999999999999873
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Back     alignment and structure
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Back     alignment and structure
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Back     alignment and structure
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Back     alignment and structure
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Back     alignment and structure
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Back     alignment and structure
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Back     alignment and structure
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Back     alignment and structure
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A* Back     alignment and structure
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Back     alignment and structure
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Back     alignment and structure
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Back     alignment and structure
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A* Back     alignment and structure
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A* Back     alignment and structure
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601} Back     alignment and structure
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A* Back     alignment and structure
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Back     alignment and structure
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A* Back     alignment and structure
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A Back     alignment and structure
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Back     alignment and structure
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Back     alignment and structure
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Back     alignment and structure
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0 Back     alignment and structure
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Back     alignment and structure
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Back     alignment and structure
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Back     alignment and structure
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A* Back     alignment and structure
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A* Back     alignment and structure
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A Back     alignment and structure
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Back     alignment and structure
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Back     alignment and structure
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus} Back     alignment and structure
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Back     alignment and structure
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Back     alignment and structure
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Back     alignment and structure
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1 Back     alignment and structure
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Back     alignment and structure
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Back     alignment and structure
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Back     alignment and structure
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Back     alignment and structure
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A* Back     alignment and structure
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 71
d2fv7a1 308 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapien 1e-06
d1rkda_ 306 c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 1e-06
d2afba1 333 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase 1e-06
d1vk4a_ 288 c.72.1.1 (A:) Hypothetical protein TM0415 {Thermot 2e-06
d2dcna1 308 c.72.1.1 (A:2-309) Hypothetical fructokinase ST247 4e-06
d1tyya_ 304 c.72.1.1 (A:) Aminoimidazole riboside kinase {Salm 5e-06
d1v19a_ 302 c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Ther 4e-05
d2ajra1 319 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {T 2e-04
d2abqa1 306 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase Fru 4e-04
d2f02a1 313 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase Lac 0.001
d1vm7a_ 299 c.72.1.1 (A:) Ribokinase {Thermotoga maritima [Tax 0.001
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 308 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-06
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 2  IIGGMVLD-IHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60
          ++G  + D +  T  +P    T    K     GG   N     ++LGA   M+  +G D 
Sbjct: 6  VVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDS 65

Query: 61 VGDFAFYF 68
           G+     
Sbjct: 66 FGNDYIEN 73
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Length = 306 Back     information, alignment and structure
>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Length = 288 Back     information, alignment and structure
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Length = 308 Back     information, alignment and structure
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Length = 304 Back     information, alignment and structure
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Length = 302 Back     information, alignment and structure
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319 Back     information, alignment and structure
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Length = 306 Back     information, alignment and structure
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Length = 313 Back     information, alignment and structure
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Length = 299 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query71
d2fv7a1 308 Ribokinase {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1rkda_ 306 Ribokinase {Escherichia coli [TaxId: 562]} 99.77
d1vm7a_ 299 Ribokinase {Thermotoga maritima [TaxId: 2336]} 99.75
d1v19a_ 302 2-keto-3-deoxygluconate kinase {Thermus thermophil 99.62
d1tyya_ 304 Aminoimidazole riboside kinase {Salmonella typhimu 99.61
d2dcna1 308 Hypothetical fructokinase ST2478 {Sulfolobus tokod 99.6
d2afba1 333 2-keto-3-deoxygluconate kinase {Thermotoga maritim 99.59
d2absa1 350 Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} 99.58
d2abqa1 306 Fructose 1-phosphate kinase FruB {Bacillus halodur 99.53
d1bx4a_ 342 Adenosine kinase {Human (Homo sapiens) [TaxId: 960 99.51
d2ajra1 319 Putative sugar kinase TM0828 {Thermotoga maritima 99.36
d2f02a1 313 Tagatose-6-phosphate kinase LacC {Enterococcus fae 99.35
d1vk4a_ 288 Hypothetical protein TM0415 {Thermotoga maritima [ 99.15
d1jaya_ 212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 82.7
>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Ribokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=111.21  Aligned_cols=71  Identities=23%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             CEEeceeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160            1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS   71 (71)
Q Consensus         1 ~~iG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~   71 (71)
                      +|||.+++|+++++++.|.++++... ++...+||+++|+|++|+|||.++.|+|.+|+|.+|+.+++.|++
T Consensus         5 ~viG~~~iD~~~~~~~~p~~g~~~~~~~~~~~~GG~~~Nva~~l~~lg~~v~~is~vG~D~~g~~i~~~L~~   76 (308)
T d2fv7a1           5 VVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQ   76 (308)
T ss_dssp             EEECCCEEEEEEECSSCCCTTCCCCCSEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHHHHT
T ss_pred             EEEChhheEeEeecCCCCCCCceEeeceEEEecCCHHHHHHHHHHHCCCCEEEEEEeccccccccccchhcc
Confidence            58999999999999998888877665 789999999999999999999999999999999999999999974
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure