Citrus Sinensis ID: 035183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQDEDAGRPYRKFL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcc
Coil and Loop (DISEMBL)
mgggmeankNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKefhmqdedagrpyrkfl
Flexible Loop (DISEMBL)
MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEfhmqdedagrpyrkfl
Low Complexity Region (SEG)
MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQDEDAGRPYRKFL
Disordered region (IsUnstruct)
***********FIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFH**************
Disordered Region (DISOPRED)
*********NRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQ****GR**R*F*
Disordered Region (DISEMBL)
MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQDEDAGRPYRKFL
Disordered Region (DISPRO)
*****EANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQDEDAG*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQDEDAGRPYRKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
224090539	71	predicted protein [Populus trichocarpa]	1.0	1.0	0.830	1e-29
18402682	71	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.788	1e-28
356520881	71	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.816	2e-28
225447820	71	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.802	3e-28
388518433	71	unknown [Lotus japonicus]	1.0	1.0	0.816	3e-28
21536829	71	unknown [Arabidopsis thaliana]	1.0	1.0	0.788	3e-28
388497192	72	unknown [Medicago truncatula]	0.985	0.972	0.8	1e-27
449523862	71	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.816	2e-27
194696644	71	unknown [Zea mays] gi|195605062|gb|ACG24	1.0	1.0	0.802	3e-27
242058699	71	hypothetical protein SORBIDRAFT_03g03472	1.0	1.0	0.788	4e-27

>gi|224090539|ref|XP_002309020.1| predicted protein [Populus trichocarpa] gi|118488449|gb|ABK96039.1| unknown [Populus trichocarpa] gi|222854996|gb|EEE92543.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 68/71 (95%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGMEANKN+FIE+WG+ARETLE NFRWTRRN A++GLFGIAVP+ +YKGIVKEF+MQD
Sbjct: 1  MGGGMEANKNKFIEDWGSARETLEQNFRWTRRNFALIGLFGIAVPILVYKGIVKEFNMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRPYRKF+
Sbjct: 61 EDAGRPYRKFM 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402682|ref|NP_565726.1| uncharacterized protein [Arabidopsis thaliana] gi|297822895|ref|XP_002879330.1| hypothetical protein ARALYDRAFT_902184 [Arabidopsis lyrata subsp. lyrata] gi|4582445|gb|AAD24829.1| expressed protein [Arabidopsis thaliana] gi|20198160|gb|AAM15434.1| expressed protein [Arabidopsis thaliana] gi|26451972|dbj|BAC43077.1| unknown protein [Arabidopsis thaliana] gi|28416745|gb|AAO42903.1| At2g31490 [Arabidopsis thaliana] gi|227204167|dbj|BAH56935.1| AT2G31490 [Arabidopsis thaliana] gi|297325169|gb|EFH55589.1| hypothetical protein ARALYDRAFT_902184 [Arabidopsis lyrata subsp. lyrata] gi|330253460|gb|AEC08554.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 67/71 (94%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGME NKN+FIE+WG+ARE LEHNFRWTRRN A++G+FGIA+P+ +YKGIVK+FHMQD
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRP+RKFL
Sbjct: 61 EDAGRPHRKFL 71

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520881|ref|XP_003529088.1| PREDICTED: uncharacterized protein LOC100306283 isoform 1 [Glycine max]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 66/71 (92%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGMEANKN+FIE+WG ARE LE NFRWTRRNLA+VG+FGIA+PV +YKGIV+EFHMQD
Sbjct: 1  MGGGMEANKNKFIEDWGTARENLEFNFRWTRRNLALVGIFGIAIPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFL 71
          ED GRPYRKF+
Sbjct: 61 EDNGRPYRKFM 71

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447820|ref|XP_002269616.1| PREDICTED: uncharacterized protein LOC100258994 isoform 1 [Vitis vinifera] gi|359485910|ref|XP_003633354.1| PREDICTED: uncharacterized protein LOC100258994 isoform 2 [Vitis vinifera] gi|296081504|emb|CBI20027.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 67/71 (94%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGMEA+KN+FIEEWGAARE LE+NFRWTRRNL + G+FG+AVP+ +Y+GIVKEFHMQD
Sbjct: 1  MGGGMEAHKNKFIEEWGAARENLEYNFRWTRRNLVLAGIFGVAVPILVYRGIVKEFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRP+RKFL
Sbjct: 61 EDAGRPHRKFL 71

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518433|gb|AFK47278.1| unknown [Lotus japonicus]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 65/71 (91%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGME NKN+FIE+W +ARE LE NFRWTRRNL +VG+FGIAVPV +YKGIV+EFHMQD
Sbjct: 1  MGGGMETNKNKFIEDWASARENLEVNFRWTRRNLLLVGIFGIAVPVLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRPYRKFL
Sbjct: 61 EDAGRPYRKFL 71

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536829|gb|AAM61161.1| unknown [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 66/71 (92%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGME NKN+FIE WG+ARE LEHNFRWTRRN A++G+FGIA+P+ +YKGIVK+FHMQD
Sbjct: 1  MGGGMETNKNKFIEYWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRP+RKFL
Sbjct: 61 EDAGRPHRKFL 71

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497192|gb|AFK36662.1| unknown [Medicago truncatula]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/70 (80%), Positives = 64/70 (91%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGMEA KN++IE+WG ARE LEHNFRW+RRNL +VG+FGIA+PV +YKGIVKEFHMQD
Sbjct: 1  MGGGMEAKKNKYIEDWGTARENLEHNFRWSRRNLLLVGIFGIALPVLVYKGIVKEFHMQD 60

Query: 61 EDAGRPYRKF 70
          ED GRPYRKF
Sbjct: 61 EDNGRPYRKF 70

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523862|ref|XP_004168942.1| PREDICTED: uncharacterized protein LOC101229266 [Cucumis sativus]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 64/71 (90%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGMEA+KN+FIE+W  ARE LE NFRWTRRNLAIVG+FGIAVP  +YKGIV+EFHMQD
Sbjct: 1  MGGGMEAHKNKFIEDWSTARENLELNFRWTRRNLAIVGIFGIAVPYLVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRPYRKF 
Sbjct: 61 EDAGRPYRKFF 71

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194696644|gb|ACF82406.1| unknown [Zea mays] gi|195605062|gb|ACG24361.1| hypothetical protein [Zea mays] gi|195627010|gb|ACG35335.1| hypothetical protein [Zea mays] gi|195636166|gb|ACG37551.1| hypothetical protein [Zea mays] gi|195640360|gb|ACG39648.1| hypothetical protein [Zea mays] gi|238012190|gb|ACR37130.1| unknown [Zea mays] gi|413952056|gb|AFW84705.1| hypothetical protein ZEAMMB73_570227 [Zea mays] gi|413952438|gb|AFW85087.1| hypothetical protein ZEAMMB73_581400 [Zea mays]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 65/71 (91%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGME +KNR+IEEW A RE LE NFRWTRR+LA+VGLFG+AVP+ +YKGIV+EFHMQD
Sbjct: 1  MGGGMEVHKNRWIEEWNAGRENLEFNFRWTRRSLAVVGLFGLAVPILVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRPYRKFL
Sbjct: 61 EDAGRPYRKFL 71

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242058699|ref|XP_002458495.1| hypothetical protein SORBIDRAFT_03g034720 [Sorghum bicolor] gi|241930470|gb|EES03615.1| hypothetical protein SORBIDRAFT_03g034720 [Sorghum bicolor]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 65/71 (91%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGME +KNR+IEEW A RE LE NFRWTRR+LA++GLFG+AVP+ +YKGIV+EFHMQD
Sbjct: 1  MGGGMEVHKNRWIEEWNAGRENLEFNFRWTRRSLAVIGLFGLAVPILVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRPYRKFL
Sbjct: 61 EDAGRPYRKFL 71

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:2061305	71	AT2G31490 "AT2G31490" [Arabido	1.0	1.0	0.788	1.8e-30

TAIR|locus:2061305 AT2G31490 "AT2G31490" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 56/71 (78%), Positives = 67/71 (94%)

Query:     1 MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
             MGGGME NKN+FIE+WG+ARE LEHNFRWTRRN A++G+FGIA+P+ +YKGIVK+FHMQD
Sbjct:     1 MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDFHMQD 60

Query:    61 EDAGRPYRKFL 71
             EDAGRP+RKFL
Sbjct:    61 EDAGRPHRKFL 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.143   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       71        71   0.00091  102 3  11 22  0.45    28
                                                     29  0.42    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  520 (55 KB)
  Total size of DFA:  104 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.70u 0.12s 7.82t   Elapsed:  00:00:00
  Total cpu time:  7.70u 0.12s 7.82t   Elapsed:  00:00:00
  Start:  Fri May 10 06:21:35 2013   End:  Fri May 10 06:21:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00060644	SubName- Full=Putative uncharacterized protein; (72 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_1520029	hypothetical protein (159 aa)							•		0.444
	eugene3.00091630	SubName- Full=Putative uncharacterized protein; (150 aa)				•			•		0.437

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	71
PLN02755	71	PLN02755, PLN02755, complex I subunit	3e-42

>gnl|CDD|178356 PLN02755, PLN02755, complex I subunit

 Score =  131 bits (331), Expect = 3e-42
 Identities = 60/71 (84%), Positives = 66/71 (92%)

Query: 1  MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD 60
          MGGGME NKN+FIEEWGAARE LE NFRWTRRNLA+VG+FGIAVP+ +YKGIV+EFHMQD
Sbjct: 1  MGGGMEVNKNKFIEEWGAARENLEFNFRWTRRNLAVVGIFGIAVPILVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRP RKFL
Sbjct: 61 EDAGRPERKFL 71

Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PLN02755	71	complex I subunit	100.0
PF07225	125	NDUF_B4: NADH-ubiquinone oxidoreductase B15 subuni	99.84

>PLN02755 complex I subunit

Probab=100.00  E-value=9.8e-35  Score=176.97  Aligned_cols=71  Identities=85%  Similarity=1.474  Sum_probs=70.2

Q ss_pred             CCCCCCCccCHHHHHHHHhhhccccceeecchhHHHHHHHHhHHhHHhHhHhhhhhhhhhhhcCCCccCCC
Q 035183            1 MGGGMEANKNRFIEEWGAARETLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQDEDAGRPYRKFL   71 (71)
Q Consensus         1 MaG~~~l~~dpalerw~~~ren~~~~FR~Tprt~~~~~~~~v~vP~~~yy~~~~~~~~~d~~~G~~~r~f~   71 (71)
                      |||++++.+|+.||.|++||||+|+||||||||++++++||++||+++||+++.||+.||.++|+|+|+|+
T Consensus         1 m~gg~~~~~Nk~iE~~~~~reNrekyFRWT~Rt~~i~~ifgv~VP~liy~giv~eF~~~d~~~grp~~kf~   71 (71)
T PLN02755          1 MGGGMEVNKNKFIEEWGAARENLEFNFRWTRRNLAVVGIFGIAVPILVYKGIVREFHMQDEDAGRPERKFL   71 (71)
T ss_pred             CCCCcccCccHHHHHHHHHHHHHHHheecccchhhhhhhhhhhhhHHhhhhhhhhhcccchhccCCccccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999996

>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.84  E-value=2.7e-21  Score=128.45  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=60.5

Q ss_pred             CCccCHHHHHHHHhhh-ccccceeecchhHHHHHHHHhHHhHHhHhHhhhhhhhhh--hhcCCCccCC
Q 035183            6 EANKNRFIEEWGAARE-TLEHNFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQD--EDAGRPYRKF   70 (71)
Q Consensus         6 ~l~~dpalerw~~~re-n~~~~FR~Tprt~~~~~~~~v~vP~~~yy~~~~~~~~~d--~~~G~~~r~f   70 (71)
                      +++.||||+||++++. |+|+||||||||+++++++++++.+++|+++++|+|.++  ++.|+.+|.|
T Consensus        54 gli~DPAL~Rw~~a~~~~~y~~FRpTPktsllg~~~~v~P~i~~~~~~KtdRD~~E~~~r~G~~dR~f  121 (125)
T PF07225_consen   54 GLIFDPALQRWAYARAVNIYEYFRPTPKTSLLGLGFGVVPLIFYYYVLKTDRDRKEKLIRTGKLDRPF  121 (125)
T ss_pred             CccCChHHHHHHHHHHhCcccccccCchHHHHHHHHHHHHHHHHHhhhccchhHHHHHHhcCccceee
Confidence            5899999999998888 999999999999999999999988888999999988876  5999999998

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00