Citrus Sinensis ID: 035240

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccHEEEccc
Coil and Loop (DISEMBL)
mdaidnvfDPLRDFAKDSLRLVkrchkpdrkefTKVAFRTAIGFVVMGFVGFFVKLIFipinniivgsg
Flexible Loop (DISEMBL)
mdaidnvfdplrdfakdslrlvkrchkpdrkeftkvAFRTAIGFVVMGFVGFFVKLIFipinniivgsg
Low Complexity Region (SEG)
MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIgfvvmgfvgffvKLIFIPINNIIVGSG
Disordered region (IsUnstruct)
******VFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIV***
Disordered Region (DISOPRED)
*****NVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGS*
Disordered Region (DISEMBL)
MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Disordered Region (DISPRO)
*DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
P38385	69	Protein transport protein	yes	no	1.0	1.0	0.913	9e-30
P0DI75	69	Protein transport protein	yes	no	0.985	0.985	0.926	2e-29
P0DI74	69	Protein transport protein	yes	no	0.985	0.985	0.926	2e-29
Q9SMP2	69	Protein transport protein	no	no	1.0	1.0	0.855	3e-28
Q962X7	68	Protein transport protein	N/A	no	0.985	1.0	0.720	6e-22
Q7Z1B8	68	Protein transport protein	N/A	no	0.985	1.0	0.720	7e-22
Q66KU2	68	Protein transport protein	N/A	no	0.985	1.0	0.705	1e-21
Q19967	68	Protein transport protein	yes	no	0.985	1.0	0.676	2e-21
Q8I7D9	68	Protein transport protein	yes	no	0.985	1.0	0.705	2e-21
Q7T207	68	Protein transport protein	N/A	no	0.985	1.0	0.705	3e-21

>sp|P38385|SC61G_ORYSJ Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica GN=Os02g0178400 PE=3 SV=1

 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 67/69 (97%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDA+D+V DPLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

Necessary for protein translocation in the endoplasmic reticulum.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0DI75|S61G2_ARATH Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana GN=SEC61G2 PE=3 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/68 (92%), Positives = 66/68 (97%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAID+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVG+
Sbjct: 61 INNIIVGA 68

Necessary for protein translocation in the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI74|S61G1_ARATH Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=3 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/68 (92%), Positives = 66/68 (97%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAID+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVG+
Sbjct: 61 INNIIVGA 68

Necessary for protein translocation in the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMP2|S61G3_ARATH Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana GN=SEC61G3 PE=3 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 64/69 (92%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          M+AID+  DPLRDFAK S+RLV+RCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKL+FIP
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGS 
Sbjct: 61 INNIIVGSS 69

Necessary for protein translocation in the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q962X7|SC61G_BRABE Protein transport protein Sec61 subunit gamma OS=Branchiostoma belcheri GN=SEC61G PE=3 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 54/68 (79%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MD +    +P R FAKDS RLVKRC KPDRKEF K+A  TAIGF +MGF+GFFVKLI IP
Sbjct: 1  MDQLVQFVEPARQFAKDSYRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68

Necessary for protein translocation in the endoplasmic reticulum.

Branchiostoma belcheri (taxid: 7741)

>sp|Q7Z1B8|S61G1_GRYOR Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis GN=SEC61G PE=3 SV=1

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 55/68 (80%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MD +    +P R FAKDS+RLVKRC KPDRKEF K+A  TAIGF +MGF+GFFVKLI IP
Sbjct: 1  MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68

Necessary for protein translocation in the endoplasmic reticulum.

Gryllotalpa orientalis (taxid: 213494)

>sp|Q66KU2|SC61G_XENLA Protein transport protein Sec61 subunit gamma OS=Xenopus laevis GN=sec61g PE=3 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 54/68 (79%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAIGF +MGF+GFFVKLI IP
Sbjct: 1  MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68

Necessary for protein translocation in the endoplasmic reticulum.

Xenopus laevis (taxid: 8355)

>sp|Q19967|SC61G_CAEEL Protein transport protein Sec61 subunit gamma OS=Caenorhabditis elegans GN=emo-1 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 54/68 (79%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MD    + +P R F+KDS RLVKRC KPDRKE+ K+A  TAIGF +MGF+GFFVKLI IP
Sbjct: 1  MDQFQALIEPARQFSKDSYRLVKRCTKPDRKEYQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 61 INNIIVGS 68
          INNIIVG+
Sbjct: 61 INNIIVGA 68

Necessary for protein translocation in the endoplasmic reticulum. Required for oocyte development and ovulation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8I7D9|SC61G_CIOIN Protein transport protein Sec61 subunit gamma OS=Ciona intestinalis GN=SEC61G PE=3 SV=1

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 55/68 (80%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MD +    +P + FAKDS+RLVKRC KPDRKEF K+A  TAIGF +MGF+GFFVKLI IP
Sbjct: 1  MDQVMAWVEPGKQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFAIMGFIGFFVKLIHIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68

Necessary for protein translocation in the endoplasmic reticulum.

Ciona intestinalis (taxid: 7719)

>sp|Q7T207|SC61G_HARAN Protein transport protein Sec61 subunit gamma OS=Harpagifer antarcticus GN=sec61g PE=3 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 53/68 (77%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MD +    +P R F KDS+RLVKRC KPDRKEF KVA  TAIGF +MGF+GFFVKLI IP
Sbjct: 1  MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKVAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 61 INNIIVGS 68
          INNIIVG 
Sbjct: 61 INNIIVGG 68

Necessary for protein translocation in the endoplasmic reticulum.

Harpagifer antarcticus (taxid: 43256)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
255540217	69	sec61 gamma subunit, putative [Ricinus c	1.0	1.0	0.971	3e-30
225451463	69	PREDICTED: protein transport protein Sec	0.985	0.985	0.955	3e-29
357492957	112	Protein transport protein SEC61 gamma su	1.0	0.616	0.927	4e-29
449455852	69	PREDICTED: protein transport protein Sec	1.0	1.0	0.942	5e-29
282848240	69	protein transport protein SEC61 subunit	1.0	1.0	0.927	7e-29
224060259	69	predicted protein [Populus trichocarpa]	0.985	0.985	0.941	1e-28
356501180	69	PREDICTED: protein transport protein Sec	1.0	1.0	0.927	1e-28
226504500	69	protein transport protein SEC61 gamma su	1.0	1.0	0.942	1e-28
255536877	69	sec61 gamma subunit, putative [Ricinus c	0.985	0.985	0.941	1e-28
226508450	69	protein transport protein SEC61 gamma su	1.0	1.0	0.927	2e-28

>gi|255540217|ref|XP_002511173.1| sec61 gamma subunit, putative [Ricinus communis] gi|223550288|gb|EEF51775.1| sec61 gamma subunit, putative [Ricinus communis]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 69/69 (100%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDA+DNVFDPLRDFAKDS+RLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDALDNVFDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451463|ref|XP_002270423.1| PREDICTED: protein transport protein Sec61 subunit gamma isoform 1 [Vitis vinifera] gi|359488485|ref|XP_003633765.1| PREDICTED: protein transport protein Sec61 subunit gamma isoform 2 [Vitis vinifera] gi|147815338|emb|CAN67771.1| hypothetical protein VITISV_010522 [Vitis vinifera] gi|296082338|emb|CBI21343.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/68 (95%), Positives = 68/68 (100%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAIDNVFDP+R+FAKDS+RLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDNVFDPMREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492957|ref|XP_003616767.1| Protein transport protein SEC61 gamma subunit [Medicago truncatula] gi|355518102|gb|AES99725.1| Protein transport protein SEC61 gamma subunit [Medicago truncatula]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 68/69 (98%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAID+VFDPLR+FAKDS+RLVKRCHKPDRKEF+KVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455852|ref|XP_004145664.1| PREDICTED: protein transport protein Sec61 subunit gamma-like isoform 1 [Cucumis sativus] gi|449455854|ref|XP_004145665.1| PREDICTED: protein transport protein Sec61 subunit gamma-like isoform 2 [Cucumis sativus] gi|449502009|ref|XP_004161518.1| PREDICTED: protein transport protein Sec61 subunit gamma-like isoform 1 [Cucumis sativus] gi|449502012|ref|XP_004161519.1| PREDICTED: protein transport protein Sec61 subunit gamma-like isoform 2 [Cucumis sativus]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAID+VFDPLR+FAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|282848240|gb|ADB02901.1| protein transport protein SEC61 subunit gamma [Jatropha curcas]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 68/69 (98%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDA+D+VFDPLR+FAKDS+RLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGS 
Sbjct: 61 INNIIVGSS 69

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060259|ref|XP_002300110.1| predicted protein [Populus trichocarpa] gi|222847368|gb|EEE84915.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 68/68 (100%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAID+VFDPLR+F+KDS+RLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVFDPLREFSKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501180|ref|XP_003519405.1| PREDICTED: protein transport protein Sec61 subunit gamma-like [Glycine max] gi|356543409|ref|XP_003540153.1| PREDICTED: protein transport protein Sec61 subunit gamma-like [Glycine max] gi|356554605|ref|XP_003545635.1| PREDICTED: protein transport protein Sec61 subunit gamma [Glycine max] gi|357479489|ref|XP_003610030.1| Protein transport protein SEC61 gamma subunit [Medicago truncatula] gi|357492959|ref|XP_003616768.1| Protein transport protein SEC61 gamma subunit [Medicago truncatula] gi|355511085|gb|AES92227.1| Protein transport protein SEC61 gamma subunit [Medicago truncatula] gi|355518103|gb|AES99726.1| Protein transport protein SEC61 gamma subunit [Medicago truncatula]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 68/69 (98%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAID+VFDPLR+FAKDS+RLVKRCHKPDRKEF+KVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKEFSKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504500|ref|NP_001148682.1| protein transport protein SEC61 gamma subunit [Zea mays] gi|242096570|ref|XP_002438775.1| hypothetical protein SORBIDRAFT_10g026000 [Sorghum bicolor] gi|195609874|gb|ACG26767.1| protein transport protein SEC61 gamma subunit [Zea mays] gi|195618380|gb|ACG31020.1| protein transport protein SEC61 gamma subunit [Zea mays] gi|195621374|gb|ACG32517.1| protein transport protein SEC61 gamma subunit [Zea mays] gi|195624782|gb|ACG34221.1| protein transport protein SEC61 gamma subunit [Zea mays] gi|241916998|gb|EER90142.1| hypothetical protein SORBIDRAFT_10g026000 [Sorghum bicolor] gi|413955006|gb|AFW87655.1| hypothetical protein ZEAMMB73_686875 [Zea mays]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 67/69 (97%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAID+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536877|ref|XP_002509505.1| sec61 gamma subunit, putative [Ricinus communis] gi|223549404|gb|EEF50892.1| sec61 gamma subunit, putative [Ricinus communis]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/68 (94%), Positives = 67/68 (98%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDAID+V DPLRDF+KDS+RLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAIDSVLDPLRDFSKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226508450|ref|NP_001147308.1| protein transport protein SEC61 gamma subunit [Zea mays] gi|195609738|gb|ACG26699.1| protein transport protein SEC61 gamma subunit [Zea mays] gi|413943503|gb|AFW76152.1| protein transport protein SEC61 gamma subunit [Zea mays]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/69 (92%), Positives = 67/69 (97%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MDA+D+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1  MDAVDSVVDPLRDFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSG 69
          INNIIVGSG
Sbjct: 61 INNIIVGSG 69

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2117393	69	AT4G24920 [Arabidopsis thalian	0.985	0.985	0.75	1.9e-21
TAIR|locus:2159692	69	AT5G50460 [Arabidopsis thalian	0.985	0.985	0.75	1.9e-21
TAIR|locus:2114530	69	AT3G48570 [Arabidopsis thalian	0.985	0.985	0.691	9.2e-20
UNIPROTKB|Q7Z1B8	68	SEC61G "Protein transport prot	0.985	1.0	0.588	1.1e-14
UNIPROTKB|Q962X7	68	SEC61G "Protein transport prot	0.985	1.0	0.588	1.4e-14
UNIPROTKB|Q66KU2	68	sec61g "Protein transport prot	0.985	1.0	0.573	1.8e-14
FB|FBgn0033691	68	CG8860 [Drosophila melanogaste	0.985	1.0	0.573	3e-14
UNIPROTKB|C1BHY7	68	SC61G "Transport protein SEC61	0.971	0.985	0.567	3e-14
UNIPROTKB|C1BWY8	68	SC61G "Transport protein Sec61	0.971	0.985	0.567	3e-14
UNIPROTKB|Q7SZU9	68	sec61g "Protein transport prot	0.971	0.985	0.582	3.8e-14

TAIR|locus:2117393 AT4G24920 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 51/68 (75%), Positives = 54/68 (79%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MDAID+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIP
Sbjct:     1 MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query:    61 INNIIVGS 68
             INNIIVG+
Sbjct:    61 INNIIVGA 68

GO:0006605 "protein targeting" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2159692 AT5G50460 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 51/68 (75%), Positives = 54/68 (79%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MDAID+V DPLRDFAKDS+RLVKRCHKPDRKEFTKVA RTAI            KLIFIP
Sbjct:     1 MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query:    61 INNIIVGS 68
             INNIIVG+
Sbjct:    61 INNIIVGA 68

GO:0006605 "protein targeting" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2114530 AT3G48570 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 47/68 (69%), Positives = 52/68 (76%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             M+AID+  DPLRDFAK S+RLV+RCHKPDRKEFTKVA RTAI            KL+FIP
Sbjct:     1 MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query:    61 INNIIVGS 68
             INNIIVGS
Sbjct:    61 INNIIVGS 68

GO:0006605 "protein targeting" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q7Z1B8 SEC61G "Protein transport protein Sec61 subunit gamma" [Gryllotalpa orientalis (taxid:213494)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 40/68 (58%), Positives = 44/68 (64%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MD +    +P R FAKDS+RLVKRC KPDRKEF K+A  TAI            KLI IP
Sbjct:     1 MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIP 60

Query:    61 INNIIVGS 68
             INNIIVGS
Sbjct:    61 INNIIVGS 68

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

UNIPROTKB|Q962X7 SEC61G "Protein transport protein Sec61 subunit gamma" [Branchiostoma belcheri (taxid:7741)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 40/68 (58%), Positives = 43/68 (63%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MD +    +P R FAKDS RLVKRC KPDRKEF K+A  TAI            KLI IP
Sbjct:     1 MDQLVQFVEPARQFAKDSYRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query:    61 INNIIVGS 68
             INNIIVGS
Sbjct:    61 INNIIVGS 68

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

UNIPROTKB|Q66KU2 sec61g "Protein transport protein Sec61 subunit gamma" [Xenopus laevis (taxid:8355)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 39/68 (57%), Positives = 43/68 (63%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IP
Sbjct:     1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query:    61 INNIIVGS 68
             INNIIVGS
Sbjct:    61 INNIIVGS 68

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

FB|FBgn0033691 CG8860 [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 39/68 (57%), Positives = 44/68 (64%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MD +    +P R FAKDS+RLVKRC KPDRKEF K+A  TA+            KLI IP
Sbjct:     1 MDKVVKFAEPGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFAIMGFIGFFVKLIHIP 60

Query:    61 INNIIVGS 68
             INNIIVGS
Sbjct:    61 INNIIVGS 68

GO:0005784 "Sec61 translocon complex" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0006616 "SRP-dependent cotranslational protein targeting to membrane, translocation" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|C1BHY7 SC61G "Transport protein SEC61 subunit gamma" [Oncorhynchus mykiss (taxid:8022)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 38/67 (56%), Positives = 43/67 (64%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MD +    +P R F KDS+RLVKRC KPDRKEF+K+A  TAI            KLI IP
Sbjct:     1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFSKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query:    61 INNIIVG 67
             INNIIVG
Sbjct:    61 INNIIVG 67

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

UNIPROTKB|C1BWY8 SC61G "Transport protein Sec61 subunit gamma" [Esox lucius (taxid:8010)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 38/67 (56%), Positives = 43/67 (64%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MD +    +P R F KDS+RLVKRC KPDRKEF+K+A  TAI            KLI IP
Sbjct:     1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFSKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query:    61 INNIIVG 67
             INNIIVG
Sbjct:    61 INNIIVG 67

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

UNIPROTKB|Q7SZU9 sec61g "Protein transport protein Sec61 subunit gamma" [Gadus morhua (taxid:8049)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 39/67 (58%), Positives = 42/67 (62%)

Query:     1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
             MD I    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IP
Sbjct:     1 MDQIMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query:    61 INNIIVG 67
             INNIIVG
Sbjct:    61 INNIIVG 67

GO:0008565 "protein transporter activity" evidence=ISS

GO:0045047 "protein targeting to ER" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P60059	SC61G_HUMAN	No assigned EC number	0.6911	0.9855	1.0	yes	no
P0DI75	S61G2_ARATH	No assigned EC number	0.9264	0.9855	0.9855	yes	no
P0DI74	S61G1_ARATH	No assigned EC number	0.9264	0.9855	0.9855	yes	no
Q962X7	SC61G_BRABE	No assigned EC number	0.7205	0.9855	1.0	N/A	no
Q66KU2	SC61G_XENLA	No assigned EC number	0.7058	0.9855	1.0	N/A	no
Q7Z1B8	S61G1_GRYOR	No assigned EC number	0.7205	0.9855	1.0	N/A	no
Q3T104	SC61G_BOVIN	No assigned EC number	0.6911	0.9855	1.0	yes	no
Q9V668	S61G1_DROME	No assigned EC number	0.7058	0.9855	1.0	yes	no
Q7SZU9	SC61G_GADMO	No assigned EC number	0.7058	0.9855	1.0	N/A	no
Q8I7D9	SC61G_CIOIN	No assigned EC number	0.7058	0.9855	1.0	yes	no
Q09827	SC61G_SCHPO	No assigned EC number	0.4558	0.9855	0.9714	yes	no
Q9VWE9	S61G2_DROME	No assigned EC number	0.7058	0.9855	1.0	yes	no
Q54JV6	SC61G_DICDI	No assigned EC number	0.6176	0.9855	0.9855	yes	no
P35179	SC61G_YEAST	No assigned EC number	0.3384	0.9420	0.8125	yes	no
Q19967	SC61G_CAEEL	No assigned EC number	0.6764	0.9855	1.0	yes	no
Q7T207	SC61G_HARAN	No assigned EC number	0.7058	0.9855	1.0	N/A	no
P38385	SC61G_ORYSJ	No assigned EC number	0.9130	1.0	1.0	yes	no
P60058	SC61G_CANFA	No assigned EC number	0.6911	0.9855	1.0	yes	no
Q9SMP2	S61G3_ARATH	No assigned EC number	0.8550	1.0	1.0	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	69
PTZ00478	81	PTZ00478, PTZ00478, Sec superfamily; Provisional	2e-25
COG2443	65	COG2443, Sss1, Preprotein translocase subunit Sss1	8e-17
TIGR00327	61	TIGR00327, secE_euk_arch, protein translocase SEC6	3e-11
pfam00584	56	pfam00584, SecE, SecE/Sec61-gamma subunits of prot	7e-09
PRK09400	61	PRK09400, secE, preprotein translocase subunit Sec	1e-07

>gnl|CDD|185656 PTZ00478, PTZ00478, Sec superfamily; Provisional

 Score = 88.6 bits (220), Expect = 2e-25
 Identities = 34/62 (54%), Positives = 50/62 (80%)

Query: 7  VFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIV 66
          V   +++FA DS RL+++C KPD KE+T +A+  ++GF +MGF+G+ +KL+FIPINNIIV
Sbjct: 19 VVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSIKLVFIPINNIIV 78

Query: 67 GS 68
          GS
Sbjct: 79 GS 80

Length = 81

>gnl|CDD|225292 COG2443, Sss1, Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]

 Score = 66.6 bits (163), Expect = 8e-17
 Identities = 26/65 (40%), Positives = 44/65 (67%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          M+ + +  + LR+F K+  R++K   KPD +E++K+A  T +G +++G +GF + LI IP
Sbjct: 1  MNQMMDKPEELREFLKEYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFIIYLIMIP 60

Query: 61 INNII 65
          IN II
Sbjct: 61 INGII 65

Length = 65

>gnl|CDD|232921 TIGR00327, secE_euk_arch, protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic

 Score = 52.1 bits (125), Expect = 3e-11
 Identities = 21/56 (37%), Positives = 36/56 (64%)

Query: 11 LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIV 66
            +F K+  R++  C KPD +E+ KVA  T IG +++G +G+ +K+I IPI  ++ 
Sbjct: 6  PVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIKIIAIPIRGVLK 61

This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created [Protein fate, Protein and peptide secretion and trafficking]. Length = 61

>gnl|CDD|201325 pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex

 Score = 46.4 bits (111), Expect = 7e-09
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 11 LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII 65
          +  F K+    +K+   P RKE  K      +  +VM    + V L+F  + N+I
Sbjct: 2  IIKFFKEVKAELKKVVWPTRKETLKTTVVVLVFVLVMALFLWLVDLVFGWLVNLI 56

SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex. Length = 56

>gnl|CDD|236497 PRK09400, secE, preprotein translocase subunit SecE; Reviewed

 Score = 43.3 bits (103), Expect = 1e-07
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 4  IDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPI 61
           + + + +++F +D  R++K   KP R+EF  VA  T +G +++G +GF + LI   +
Sbjct: 3  SNKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIYLIMTLL 60

Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PTZ00478	81	Sec superfamily; Provisional	100.0
KOG3498	67	consensus Preprotein translocase, gamma subunit [I	100.0
TIGR00327	61	secE_euk_arch protein translocase SEC61 complex ga	99.98
COG2443	65	Sss1 Preprotein translocase subunit Sss1 [Intracel	99.96
PRK09400	61	secE preprotein translocase subunit SecE; Reviewed	99.95
PF00584	57	SecE: SecE/Sec61-gamma subunits of protein translo	98.86
PRK07597	64	secE preprotein translocase subunit SecE; Reviewed	95.11
PRK05740	92	secE preprotein translocase subunit SecE; Reviewed	94.78
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	94.76
TIGR00964	55	secE_bact preprotein translocase, SecE subunit, ba	93.67
COG0690	73	SecE Preprotein translocase subunit SecE [Intracel	88.62

>PTZ00478 Sec superfamily; Provisional

Probab=100.00  E-value=2e-37  Score=194.83  Aligned_cols=68  Identities=50%  Similarity=1.023  Sum_probs=66.3

Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 035240            1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGS   68 (69)
Q Consensus         1 m~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~niivg~   68 (69)
                      ||.++++++++++|++||+|++++|+||||+||+++|+++++||++||+|||+||||||||||+||||
T Consensus        13 m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~IKLIhIPinniivg~   80 (81)
T PTZ00478         13 SNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSIKLVFIPINNIIVGS   80 (81)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhheeEeeccceecCC
Confidence            67788999999999999999999999999999999999999999999999999999999999999997

>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-37  Score=187.75  Aligned_cols=67  Identities=78%  Similarity=1.301  Sum_probs=66.3

Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 035240            1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVG   67 (69)
Q Consensus         1 m~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~niivg   67 (69)
                      ||+++++.|+++||.||+.|++|||+||||+||+++++++|+||++||+|||+||||||||||+|||
T Consensus         1 m~~~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf~vKLIhIPInnIIVg   67 (67)
T KOG3498|consen    1 MDQVDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGFFVKLIHIPINNIIVG   67 (67)
T ss_pred             CchHHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHheecccceecC
Confidence            8999999999999999999999999999999999999999999999999999999999999999997

>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic

Probab=99.98  E-value=1e-32  Score=165.55  Aligned_cols=59  Identities=36%  Similarity=0.778  Sum_probs=57.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035240            7 VFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII   65 (69)
Q Consensus         7 ~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~nii   65 (69)
                      +.|++++|++||+|++++|+|||||||+++++++++||++||++||+||++|+||||++
T Consensus         2 ~~e~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ikli~~pi~~ii   60 (61)
T TIGR00327         2 LIEAPVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIKIIAIPIRGVL   60 (61)
T ss_pred             ccchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            57899999999999999999999999999999999999999999999999999999987

This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.

>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]

Probab=99.96  E-value=7.7e-30  Score=155.02  Aligned_cols=65  Identities=40%  Similarity=0.748  Sum_probs=62.2

Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035240            1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII   65 (69)
Q Consensus         1 m~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~nii   65 (69)
                      |++.++..|.+++|+++|+||+++|+|||||||++++|++|+||+++|+|||+|+++|+|+++++
T Consensus         1 ~~~~~~~~e~~~~~lke~~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI~li~~~i~~~~   65 (65)
T COG2443           1 MNQMMDKPEELREFLKEYRRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFIIYLIMIPINGII   65 (65)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            56788899999999999999999999999999999999999999999999999999999999864

>PRK09400 secE preprotein translocase subunit SecE; Reviewed

Probab=99.95  E-value=8.3e-28  Score=143.97  Aligned_cols=59  Identities=31%  Similarity=0.616  Sum_probs=55.9

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035240            3 AIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPI   61 (69)
Q Consensus         3 ~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI   61 (69)
                      ..+++.|++++|++||+|++++|+|||||||+++++++++||++||+|||+||+++..+
T Consensus         2 ~~~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ikli~~~l   60 (61)
T PRK09400          2 SSNKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIYLIMTLL   60 (61)
T ss_pred             cHHHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35678999999999999999999999999999999999999999999999999999765

>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway

Probab=98.86  E-value=7.4e-09  Score=59.60  Aligned_cols=55  Identities=27%  Similarity=0.484  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035240           11 LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII   65 (69)
Q Consensus        11 ~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~nii   65 (69)
                      +.+|+++.++-+++++.||++|..+.+.++.++.+++|++.|.+..++.++.+.+
T Consensus         2 ~~~f~~~~~~Elkkv~WP~~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~i   56 (57)
T PF00584_consen    2 IKNFFREVKKELKKVTWPSRKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNLI   56 (57)
T ss_dssp             CHHHHHCHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999988765

Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.

>PRK07597 secE preprotein translocase subunit SecE; Reviewed

Probab=95.11  E-value=0.32  Score=28.38  Aligned_cols=52  Identities=23%  Similarity=0.387  Sum_probs=42.0

Q ss_pred             hhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240            7 VFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF   58 (69)
Q Consensus         7 ~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~   58 (69)
                      ......+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++++=|.+-.++
T Consensus         6 ~~~~~~~f~~~~~~ElkkV~WPs~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~   57 (64)
T PRK07597          6 KMKKLKKFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFALFFYLVDLLF   57 (64)
T ss_pred             HhHHHHHHHHHHHHHHhhCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456789999999999999999999999988888877777776666655444

>PRK05740 secE preprotein translocase subunit SecE; Reviewed

Probab=94.78  E-value=0.24  Score=31.25  Aligned_cols=50  Identities=22%  Similarity=0.284  Sum_probs=38.7

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240            9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF   58 (69)
Q Consensus         9 e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~   58 (69)
                      ....+|++|.+.=+|+++=|+|+|-.+..-++.+-.+++++.=+.+-.++
T Consensus        34 ~~~~~F~k~v~~ElkKV~WPtr~e~~~~t~~Viv~~~i~~l~i~~~D~~~   83 (92)
T PRK05740         34 KAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLDSIL   83 (92)
T ss_pred             HHHHHHHHHHHHHhhhccCcCHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34678999999999999999999999888887777766665544444333

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=94.76  E-value=0.17  Score=30.61  Aligned_cols=53  Identities=11%  Similarity=0.195  Sum_probs=43.1

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240            2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFV   54 (69)
Q Consensus         2 ~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiI   54 (69)
                      |+++.+.+...+.-.++..|-+.+++=.++.+++-.|...+.++++.++-++|
T Consensus        31 e~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i   83 (89)
T PF00957_consen   31 EKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence            45777788888888999999999999999999999888877777766666664

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial

Probab=93.67  E-value=0.59  Score=26.63  Aligned_cols=47  Identities=21%  Similarity=0.279  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240           12 RDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF   58 (69)
Q Consensus        12 ~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~   58 (69)
                      .+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++++=+.+-.++
T Consensus         2 ~~f~~~~~~ElkkV~WPt~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~   48 (55)
T TIGR00964         2 FKFFKEVKAELKKVVWPSRKELITYTIVVIVFVIFFSLFLFGVDYVF   48 (55)
T ss_pred             hhHHHHHHHHHhcCcCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999988888777777766655554443

This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.

>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]

Probab=88.62  E-value=3.8  Score=24.77  Aligned_cols=50  Identities=14%  Similarity=0.199  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240            8 FDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLI   57 (69)
Q Consensus         8 ~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI   57 (69)
                      -+...+|+++.+.=+++-+=|+|+|-.+...++..-.++++++=|++-..
T Consensus        17 ~k~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l   66 (73)
T COG0690          17 GKKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQL   66 (73)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34458999999999999999999999998888887777777666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
2wwb_B	68	Cryo-Em Structure Of The Mammalian Sec61 Complex Bo		2e-14
2ww9_B	80	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		9e-04

>pdb|2WWB|B Chain B, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 68

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 42/68 (61%)
Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAI            KLI IP
Sbjct: 1  MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60
Query: 61 INNIIVGS 68
          INNIIVG 
Sbjct: 61 INNIIVGG 68

>pdb|2WW9|B Chain B, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 80

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 2  DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIPI 61
          + ++ + +   +F ++  + + +C KPD KE+TK+     I            KLI IPI
Sbjct: 16 NQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPI 75
Query: 62 NNIIV 66
            +IV
Sbjct: 76 RYVIV 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
2wwb_B	68	SEC61gamma, protein transport protein SEC61 subuni	3e-33
2ww9_B	80	Protein transport protein SSS1; ribonucleoprotein,	1e-32
1rh5_B	74	Preprotein translocase SECE subunit; protein trans	7e-14
3mp7_B	61	Preprotein translocase subunit SECE; protein trans	6e-07

>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 68

 Score =  107 bits (270), Expect = 3e-33
 Identities = 47/67 (70%), Positives = 53/67 (79%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
          MD +    +P R F KDS+RLVKRC KPDRKEF K+A  TAIGF +MGF+GFFVKLI IP
Sbjct: 1  MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIP 60

Query: 61 INNIIVG 67
          INNIIVG
Sbjct: 61 INNIIVG 67

>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B Length = 80

 Score =  106 bits (266), Expect = 1e-32
 Identities = 22/66 (33%), Positives = 41/66 (62%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
           + ++ + +   +F ++  + + +C KPD KE+TK+     IGF+ +G +G+ +KLI IP
Sbjct: 15 NNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIP 74

Query: 61 INNIIV 66
          I  +IV
Sbjct: 75 IRYVIV 80

>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B Length = 74

 Score = 58.9 bits (142), Expect = 7e-14
 Identities = 15/66 (22%), Positives = 32/66 (48%)

Query: 1  MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60
              +   + L++F ++  R+     KP + E+  VA  TA+G  ++G +G+ + +    
Sbjct: 2  KTDFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATY 61

Query: 61 INNIIV 66
          I  I+ 
Sbjct: 62 IKGILK 67

>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 61

 Score = 41.1 bits (96), Expect = 6e-07
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 11 LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLI 57
          +R F K+S R      KP+   + + A  T +G +++G +G  ++++
Sbjct: 8  IRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIRIV 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
2wwb_B	68	SEC61gamma, protein transport protein SEC61 subuni	100.0
2ww9_B	80	Protein transport protein SSS1; ribonucleoprotein,	100.0
1rh5_B	74	Preprotein translocase SECE subunit; protein trans	99.98
3mp7_B	61	Preprotein translocase subunit SECE; protein trans	99.95
3bo0_B	65	Preprotein translocase SECE subunit; ribosome-SECY	99.63
3dl8_C	65	SECE; RECA-type ATPase membrane protein translocat	93.92
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	93.54
3din_D	65	Preprotein translocase subunit SECE; protein trans	87.27
2zjs_E	60	Preprotein translocase SECE subunit; translocon, S	85.01
3bo0_B	65	Preprotein translocase SECE subunit; ribosome-SECY	81.43

>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}

Probab=100.00  E-value=7e-39  Score=194.71  Aligned_cols=68  Identities=69%  Similarity=1.184  Sum_probs=67.1

Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 035240            1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGS   68 (69)
Q Consensus         1 m~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~niivg~   68 (69)
                      ||+++++.|++++|++||+|++++|+|||||||+++++++++||++||+|||+|||||+||||++|||
T Consensus         1 ~~~~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~IklI~ipinniivg~   68 (68)
T 2wwb_B            1 MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG   68 (68)
T ss_dssp             CCSSSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHHHHGGGTSCSSCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999997

>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B

Probab=100.00  E-value=3.8e-36  Score=187.63  Aligned_cols=66  Identities=33%  Similarity=0.775  Sum_probs=59.4

Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 035240            1 MDAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIV   66 (69)
Q Consensus         1 m~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~niiv   66 (69)
                      ||+++++.|++++|++||+|++++|+|||||||+++++++++||++||+|||+|||||+||||+||
T Consensus        15 ~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI~iPInnIiv   80 (80)
T 2ww9_B           15 NNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVIV   80 (80)
T ss_dssp             ------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence            589999999999999999999999999999999999999999999999999999999999999986

>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B

Probab=99.98  E-value=4e-33  Score=171.62  Aligned_cols=66  Identities=23%  Similarity=0.461  Sum_probs=55.3

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 035240            2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVG   67 (69)
Q Consensus         2 ~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~niivg   67 (69)
                      |.++++.|++++|++||+|++++|+|||||||+++++++++||++||+|||+||++|+||||+|..
T Consensus         3 ~~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIkli~ipIn~ii~~   68 (74)
T 1rh5_B            3 TDFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILKP   68 (74)
T ss_dssp             ---------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            578889999999999999999999999999999999999999999999999999999999999863

>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}

Probab=99.95  E-value=1.1e-28  Score=146.97  Aligned_cols=58  Identities=24%  Similarity=0.495  Sum_probs=50.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035240            5 DNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPIN   62 (69)
Q Consensus         5 ~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~   62 (69)
                      .++.|++++|++||+|++++|+|||||||+++++++++||++||++||+||++|+-++
T Consensus         2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli~~~l~   59 (61)
T 3mp7_B            2 AELQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIRIVGILIL   59 (61)
T ss_dssp             ------CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999999999999999999999999998765

>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B

Probab=99.63  E-value=1.9e-16  Score=92.95  Aligned_cols=61  Identities=21%  Similarity=0.412  Sum_probs=58.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035240            5 DNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII   65 (69)
Q Consensus         5 ~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~nii   65 (69)
                      .++.+.++|+.+|++|+...|+||||+||.++++.+++|++++|++||+++++++++++++
T Consensus         4 ~~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~~i~~~l   64 (65)
T 3bo0_B            4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHC
T ss_pred             chHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            4578889999999999999999999999999999999999999999999999999999865

>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}

Probab=93.92  E-value=0.04  Score=31.84  Aligned_cols=50  Identities=24%  Similarity=0.352  Sum_probs=16.0

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240            9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF   58 (69)
Q Consensus         9 e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~   58 (69)
                      +.+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.+++++.=+.+-.++
T Consensus         2 ~k~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~   51 (65)
T 3dl8_C            2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTF   51 (65)
T ss_dssp             --------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999888888777777766555544433

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=93.54  E-value=0.26  Score=29.91  Aligned_cols=49  Identities=14%  Similarity=0.073  Sum_probs=39.3

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 035240            2 DAIDNVFDPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFV   50 (69)
Q Consensus         2 ~~~~~~~e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~I   50 (69)
                      |+++.+.+...+.-.++..|-+.++|=.|+-+.+..|...+-.+++-++
T Consensus        33 ekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~i   81 (91)
T 3hd7_A           33 QKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII   81 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888899999999999999999999999999876544433333

>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}

Probab=87.27  E-value=0.04  Score=31.83  Aligned_cols=50  Identities=24%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240            9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF   58 (69)
Q Consensus         9 e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~   58 (69)
                      +.+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++++=+.+-.++
T Consensus         2 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~   51 (65)
T 3din_D            2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIF   51 (65)
T ss_dssp             --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678888999889999999999988887777777666666555444433

>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E

Probab=85.01  E-value=0.12  Score=29.27  Aligned_cols=50  Identities=10%  Similarity=0.088  Sum_probs=33.4

Q ss_pred             hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035240            9 DPLRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIF   58 (69)
Q Consensus         9 e~~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~   58 (69)
                      +.+.+|++|.+.=+|+.+=|+|+|-.+...++.+-.++++++=+.+-.++
T Consensus         3 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~   52 (60)
T 2zjs_E            3 ARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVF   52 (60)
T ss_dssp             ---------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678889999889999999999999988888887777777666655544

>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B

Probab=81.43  E-value=4.3  Score=22.61  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035240           10 PLRDFAKDSLRLVKRCHKPDRKE-FTKVAFRTAIGFVVMGFVGFFVKLIFI   59 (69)
Q Consensus        10 ~~~~f~~~~~r~lk~~~KPd~~E-f~~~~k~~~lG~~i~G~IGfiIklI~i   59 (69)
                      .+.+|++|.+.=+++...|+|++ .....+++-.-.+.+.++|++-.++..
T Consensus         5 ~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~l   55 (65)
T 3bo0_B            5 ATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHV   55 (65)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            46799999999999999999965 466677788888888889988766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	69
d1rh5b_	56	f.23.28.1 (B:) Preprotein translocase SecE subunit	3e-21

>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 56

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Preprotein translocase SecE subunit
family: Preprotein translocase SecE subunit
domain: Preprotein translocase SecE subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 75.8 bits (187), Expect = 3e-21
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 11 LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII 65
          L++F ++  R+     KP + E+  VA  TA+G  ++G +G+ + +    I  I+
Sbjct: 1  LKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d1rh5b_	56	Preprotein translocase SecE subunit {Archaeon Meth	99.96

>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Preprotein translocase SecE subunit
family: Preprotein translocase SecE subunit
domain: Preprotein translocase SecE subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=1.3e-30  Score=152.31  Aligned_cols=55  Identities=27%  Similarity=0.540  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035240           11 LRDFAKDSLRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNII   65 (69)
Q Consensus        11 ~~~f~~~~~r~lk~~~KPd~~Ef~~~~k~~~lG~~i~G~IGfiIklI~ipI~nii   65 (69)
                      +++|++||+|++|+|||||||||+++++++|+||++||+|||+|+++|+||||+|
T Consensus         1 lk~F~~es~Rvlk~~~KP~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~~i~~ii   55 (56)
T d1rh5b_           1 LKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL   55 (56)
T ss_dssp             CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            3689999999999999999999999999999999999999999999999999986