Citrus Sinensis ID: 035256

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEEcccEEEEEEEcHHHHHHHHHcccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccEEEEEEcccEEEEEEEEcEEEEEEEEccHHHHHHHHHccccccEEEEc
Coil and Loop (DISEMBL)
MPKQIHEIKDFLLTARRKdarsvkikrsrDVVKFKVRCSKYLYTLCVfdsekadklkqslppglsvqdl
Flexible Loop (DISEMBL)
MPKQIHEIKDflltarrkdarsvkikrsrdvvkfkvrcSKYLYTLCVFdsekadklkqslppglsvqdl
Low Complexity Region (SEG)
MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Disordered region (IsUnstruct)
********KDFLLTARR**ARSVKIKRSRDVVKFKVRCSKYLYTLCVFD********************
Disordered Region (DISOPRED)
*PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSV***
Disordered Region (DISEMBL)
MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Disordered Region (DISPRO)
MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
O22860	69	60S ribosomal protein L38	yes	no	1.0	1.0	0.942	2e-31
P46291	69	60S ribosomal protein L38	N/A	no	1.0	1.0	0.898	2e-29
Q95V84	70	60S ribosomal protein L38	N/A	no	1.0	0.985	0.811	1e-26
Q9JJI8	70	60S ribosomal protein L38	yes	no	1.0	0.985	0.768	6e-25
P63174	70	60S ribosomal protein L38	yes	no	1.0	0.985	0.753	2e-24
P63173	70	60S ribosomal protein L38	yes	no	1.0	0.985	0.753	2e-24
Q32PB9	70	60S ribosomal protein L38	yes	no	1.0	0.985	0.753	2e-24
Q8HXB9	70	60S ribosomal protein L38	N/A	no	0.985	0.971	0.75	5e-24
Q4PMD1	71	60S ribosomal protein L38	N/A	no	1.0	0.971	0.742	1e-22
Q56FC8	76	60S ribosomal protein L38	N/A	no	1.0	0.907	0.695	1e-22

>sp|O22860|RL38_ARATH 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

Arabidopsis thaliana (taxid: 3702)

>sp|P46291|RL38_SOLLC 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/69 (89%), Positives = 67/69 (97%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

Solanum lycopersicum (taxid: 4081)

>sp|Q95V84|RL38_BRABE 60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 65/69 (94%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

Branchiostoma belcheri (taxid: 7741)

>sp|Q9JJI8|RL38_MOUSE 60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 64/69 (92%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGL+V+DL
Sbjct: 61 PPGLAVKDL 69

Mus musculus (taxid: 10090)

>sp|P63174|RL38_RAT 60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 64/69 (92%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

Rattus norvegicus (taxid: 10116)

>sp|P63173|RL38_HUMAN 60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 64/69 (92%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

Homo sapiens (taxid: 9606)

>sp|Q32PB9|RL38_BOVIN 60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 64/69 (92%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGL+V++L
Sbjct: 61 PPGLAVKEL 69

Bos taurus (taxid: 9913)

>sp|Q8HXB9|RL38_MACFA 60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 63/68 (92%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQD 68
          PPGL+V++
Sbjct: 61 PPGLAVKE 68

Macaca fascicularis (taxid: 9541)

>sp|Q4PMD1|RL38_IXOSC 60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 1/70 (1%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQS 59
          MPKQ+ EIK+FLLTARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + EKA+KLKQS
Sbjct: 1  MPKQLKEIKEFLLTARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQS 60

Query: 60 LPPGLSVQDL 69
          LPPGL V++L
Sbjct: 61 LPPGLQVKEL 70

Ixodes scapularis (taxid: 6945)

>sp|Q56FC8|RL38_LYSTE 60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 62/69 (89%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFL+TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSL
Sbjct: 1  MPREIKEIKDFLVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGL V+++
Sbjct: 61 PPGLQVKEV 69

Lysiphlebus testaceipes (taxid: 77504)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
297735234	127	unnamed protein product [Vitis vinifera]	1.0	0.543	0.985	2e-31
359476741	69	PREDICTED: 60S ribosomal protein L38-lik	1.0	1.0	0.985	9e-31
356557357	100	PREDICTED: 60S ribosomal protein L38-lik	1.0	0.69	0.971	9e-31
224112413	69	predicted protein [Populus trichocarpa]	1.0	1.0	0.985	1e-30
225434004	69	PREDICTED: 60S ribosomal protein L38 iso	1.0	1.0	0.971	1e-30
224093023	69	predicted protein [Populus trichocarpa]	1.0	1.0	0.971	1e-30
388509538	69	unknown [Lotus japonicus]	1.0	1.0	0.971	1e-30
356550394	69	PREDICTED: 60S ribosomal protein L38 [Gl	1.0	1.0	0.971	2e-30
255586392	96	60S ribosomal protein L38, putative [Ric	1.0	0.718	0.971	2e-30
255547500	78	60S ribosomal protein L38, putative [Ric	0.985	0.871	0.985	2e-30

>gi|297735234|emb|CBI17596.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/69 (98%), Positives = 69/69 (100%)

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 59  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 118

Query: 61  PPGLSVQDL 69
           PPGLSVQDL
Sbjct: 119 PPGLSVQDL 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476741|ref|XP_003631881.1| PREDICTED: 60S ribosomal protein L38-like [Vitis vinifera] gi|449442271|ref|XP_004138905.1| PREDICTED: 60S ribosomal protein L38-like [Cucumis sativus] gi|449454586|ref|XP_004145035.1| PREDICTED: 60S ribosomal protein L38-like [Cucumis sativus] gi|449506284|ref|XP_004162704.1| PREDICTED: 60S ribosomal protein L38-like [Cucumis sativus]

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 68/69 (98%), Positives = 69/69 (100%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557357|ref|XP_003546983.1| PREDICTED: 60S ribosomal protein L38-like [Glycine max]

 Score =  137 bits (345), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 69/69 (100%)

Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 32  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 91

Query: 61  PPGLSVQDL 69
           PPGLSVQD+
Sbjct: 92  PPGLSVQDV 100

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112413|ref|XP_002316180.1| predicted protein [Populus trichocarpa] gi|224133246|ref|XP_002327996.1| predicted protein [Populus trichocarpa] gi|356512333|ref|XP_003524874.1| PREDICTED: 60S ribosomal protein L38-like [Glycine max] gi|356525108|ref|XP_003531169.1| PREDICTED: 60S ribosomal protein L38-like [Glycine max] gi|356549134|ref|XP_003542952.1| PREDICTED: 60S ribosomal protein L38 [Glycine max] gi|356555492|ref|XP_003546065.1| PREDICTED: 60S ribosomal protein L38-like [Glycine max] gi|118482000|gb|ABK92931.1| unknown [Populus trichocarpa] gi|118483885|gb|ABK93833.1| unknown [Populus trichocarpa] gi|222837405|gb|EEE75784.1| predicted protein [Populus trichocarpa] gi|222865220|gb|EEF02351.1| predicted protein [Populus trichocarpa] gi|255626373|gb|ACU13531.1| unknown [Glycine max]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/69 (98%), Positives = 68/69 (98%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434004|ref|XP_002272496.1| PREDICTED: 60S ribosomal protein L38 isoform 1 [Vitis vinifera]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 69/69 (100%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093023|ref|XP_002309783.1| predicted protein [Populus trichocarpa] gi|222852686|gb|EEE90233.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 68/69 (98%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSRD VKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDAVKFKVRCSKYLYTLCVFDTEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509538|gb|AFK42835.1| unknown [Lotus japonicus]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 69/69 (100%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFD+EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 61 PPGLSVQDL 69

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550394|ref|XP_003543572.1| PREDICTED: 60S ribosomal protein L38 [Glycine max]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 69/69 (100%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61 PPGLSVQDL 69
          PPGLSVQD+
Sbjct: 61 PPGLSVQDV 69

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586392|ref|XP_002533843.1| 60S ribosomal protein L38, putative [Ricinus communis] gi|223526222|gb|EEF28545.1| 60S ribosomal protein L38, putative [Ricinus communis]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 69/69 (100%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          +PKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 28 LPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 87

Query: 61 PPGLSVQDL 69
          PPGLSVQDL
Sbjct: 88 PPGLSVQDL 96

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547500|ref|XP_002514807.1| 60S ribosomal protein L38, putative [Ricinus communis] gi|223545858|gb|EEF47361.1| 60S ribosomal protein L38, putative [Ricinus communis]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 2  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61
          PKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP
Sbjct: 11 PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 70

Query: 62 PGLSVQDL 69
          PGLSVQDL
Sbjct: 71 PGLSVQDL 78

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2058172	69	AT2G43460 [Arabidopsis thalian	1.0	1.0	0.942	8.8e-31
TAIR|locus:2097503	69	AT3G59540 [Arabidopsis thalian	1.0	1.0	0.942	8.8e-31
MGI|MGI:1914921	70	Rpl38 "ribosomal protein L38"	1.0	0.985	0.768	2e-24
UNIPROTKB|E1BU66	70	RPL38 "Uncharacterized protein	1.0	0.985	0.753	5.3e-24
UNIPROTKB|Q32PB9	70	RPL38 "60S ribosomal protein L	1.0	0.985	0.753	5.3e-24
UNIPROTKB|P63173	70	RPL38 "60S ribosomal protein L	1.0	0.985	0.753	5.3e-24
UNIPROTKB|F2Z568	70	RPL38 "Uncharacterized protein	1.0	0.985	0.753	5.3e-24
RGD|1305573	70	Rpl38 "ribosomal protein L38"	1.0	0.985	0.753	5.3e-24
RGD|1561636	70	RGD1561636 "similar to 60S rib	1.0	0.985	0.739	1.4e-23
RGD|1592976	70	LOC680353 "similar to 60S ribo	1.0	0.985	0.739	3.8e-23

TAIR|locus:2058172 AT2G43460 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGLSVQDL
Sbjct:    61 PPGLSVQDL 69

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2097503 AT3G59540 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGLSVQDL
Sbjct:    61 PPGLSVQDL 69

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

MGI|MGI:1914921 Rpl38 "ribosomal protein L38" [Mus musculus (taxid:10090)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 53/69 (76%), Positives = 64/69 (92%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGL+V+DL
Sbjct:    61 PPGLAVKDL 69

GO:0001501 "skeletal system development" evidence=IMP;TAS

GO:0001503 "ossification" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0033291 "eukaryotic 80S initiation complex" evidence=IDA

GO:0034463 "90S preribosome assembly" evidence=IDA

GO:0042474 "middle ear morphogenesis" evidence=IMP

GO:0048318 "axial mesoderm development" evidence=IMP

UNIPROTKB|E1BU66 RPL38 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/69 (75%), Positives = 64/69 (92%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGL+V++L
Sbjct:    61 PPGLAVKEL 69

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0001503 "ossification" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0042474 "middle ear morphogenesis" evidence=IEA

UNIPROTKB|Q32PB9 RPL38 "60S ribosomal protein L38" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/69 (75%), Positives = 64/69 (92%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGL+V++L
Sbjct:    61 PPGLAVKEL 69

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P63173 RPL38 "60S ribosomal protein L38" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/69 (75%), Positives = 64/69 (92%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGL+V++L
Sbjct:    61 PPGLAVKEL 69

GO:0001503 "ossification" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0042474 "middle ear morphogenesis" evidence=IEA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z568 RPL38 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/69 (75%), Positives = 64/69 (92%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGL+V++L
Sbjct:    61 PPGLAVKEL 69

GO:0042474 "middle ear morphogenesis" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0001503 "ossification" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1305573 Rpl38 "ribosomal protein L38" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/69 (75%), Positives = 64/69 (92%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGL+V++L
Sbjct:    61 PPGLAVKEL 69

GO:0001501 "skeletal system development" evidence=ISO

GO:0001503 "ossification" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0033291 "eukaryotic 80S initiation complex" evidence=ISO

GO:0034463 "90S preribosome assembly" evidence=ISO

GO:0042474 "middle ear morphogenesis" evidence=ISO

GO:0048318 "axial mesoderm development" evidence=ISO

RGD|1561636 RGD1561636 "similar to 60S ribosomal protein L38" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/69 (73%), Positives = 63/69 (91%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EK +KLKQSL
Sbjct:     1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKVEKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGL+V++L
Sbjct:    61 PPGLAVKEL 69

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|1592976 LOC680353 "similar to 60S ribosomal protein L38" [Rattus norvegicus (taxid:10116)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 51/69 (73%), Positives = 63/69 (91%)

Query:     1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
             MP++I EIKDFLLTA+RKDA+SVKIK++ D VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct:     1 MPQKIEEIKDFLLTAQRKDAKSVKIKKNTDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query:    61 PPGLSVQDL 69
             PPGL+V++L
Sbjct:    61 PPGLAVKEL 69

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A6N9N3	RL38_ORNPR	No assigned EC number	0.7428	1.0	0.9718	N/A	no
Q6XIM7	RL38_DROYA	No assigned EC number	0.6376	1.0	0.9857	N/A	no
O22860	RL38_ARATH	No assigned EC number	0.9420	1.0	1.0	yes	no
Q32PB9	RL38_BOVIN	No assigned EC number	0.7536	1.0	0.9857	yes	no
Q6F450	RL38_PLUXY	No assigned EC number	0.6811	1.0	0.9857	N/A	no
O17570	RL38_CAEEL	No assigned EC number	0.6811	1.0	0.9857	yes	no
P49167	RL38_YEAST	No assigned EC number	0.4230	1.0	0.8846	yes	no
O61570	RL38_OSTOS	No assigned EC number	0.6956	1.0	0.9857	N/A	no
P63174	RL38_RAT	No assigned EC number	0.7536	1.0	0.9857	yes	no
Q5MGL3	RL38_LONON	No assigned EC number	0.6666	1.0	0.9857	N/A	no
P63173	RL38_HUMAN	No assigned EC number	0.7536	1.0	0.9857	yes	no
A2I469	RL38_MACHI	No assigned EC number	0.6666	1.0	0.8846	N/A	no
Q5UAP8	RL38_BOMMO	No assigned EC number	0.6666	1.0	0.9857	N/A	no
Q9USR7	RL38A_SCHPO	No assigned EC number	0.6142	1.0	0.9324	yes	no
Q9JJI8	RL38_MOUSE	No assigned EC number	0.7681	1.0	0.9857	yes	no
Q95V84	RL38_BRABE	No assigned EC number	0.8115	1.0	0.9857	N/A	no
Q1HRT4	RL38_AEDAE	No assigned EC number	0.6666	1.0	0.9857	N/A	no
Q56FC8	RL38_LYSTE	No assigned EC number	0.6956	1.0	0.9078	N/A	no
A7L6A2	RL38_ARTSF	No assigned EC number	0.6811	1.0	0.9857	N/A	no
Q9C2B9	RL38_NEUCR	No assigned EC number	0.5352	1.0	0.8625	N/A	no
Q962S5	RL38_SPOFR	No assigned EC number	0.6811	1.0	0.9857	N/A	no
Q7Q0U1	RL38_ANOGA	No assigned EC number	0.6666	1.0	0.9857	yes	no
Q4UGN5	RL38_THEAN	No assigned EC number	0.4347	0.9275	0.8101	yes	no
Q55GJ7	RL38_DICDI	No assigned EC number	0.5692	0.9275	0.8533	yes	no
Q4GX86	RL38_TIMBA	No assigned EC number	0.6666	1.0	0.9857	N/A	no
Q4GX87	RL38_JULON	No assigned EC number	0.7101	1.0	0.9857	N/A	no
Q4N921	RL38_THEPA	No assigned EC number	0.4637	0.9275	0.8101	yes	no
P46291	RL38_SOLLC	No assigned EC number	0.8985	1.0	1.0	N/A	no
Q4PMD1	RL38_IXOSC	No assigned EC number	0.7428	1.0	0.9718	N/A	no
Q9W5N2	RL38_DROME	No assigned EC number	0.6376	1.0	0.9857	yes	no
Q09JT4	RL38_ARGMO	No assigned EC number	0.7428	1.0	0.9718	N/A	no
Q8HXB9	RL38_MACFA	No assigned EC number	0.75	0.9855	0.9714	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	69
pfam01781	69	pfam01781, Ribosomal_L38e, Ribosomal L38e protein	8e-29
PTZ00181	82	PTZ00181, PTZ00181, 60S ribosomal protein L38; Pro	5e-16

>gnl|CDD|201970 pfam01781, Ribosomal_L38e, Ribosomal L38e protein family

 Score = 96.9 bits (242), Expect = 8e-29
 Identities = 45/69 (65%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 2  PKQIHEIKDFLLTARRKDARSVKIKRSRDV-VKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          PK+I +IKDFL  ARRKDA+SVKIK+++    KFKVRCS+YLYTL V D +KA+KLKQSL
Sbjct: 1  PKEITDIKDFLEIARRKDAKSVKIKKNKKKITKFKVRCSRYLYTLVVADKKKAEKLKQSL 60

Query: 61 PPGLSVQDL 69
          PP L V ++
Sbjct: 61 PPTLKVIEV 69

Length = 69

>gnl|CDD|140208 PTZ00181, PTZ00181, 60S ribosomal protein L38; Provisional

 Score = 65.1 bits (158), Expect = 5e-16
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I  +K+FL    RKDAR VK+K +    KFKVRCS+YLYTL V D +KADK+++S+
Sbjct: 1  MPREIKTLKEFLAICSRKDARCVKVKHNPSATKFKVRCSRYLYTLVVADKKKADKIERSI 60

Query: 61 PP 62
           P
Sbjct: 61 HP 62

Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
KOG3499	69	consensus 60S ribosomal protein L38 [Translation,	100.0
PTZ00181	82	60S ribosomal protein L38; Provisional	100.0
PF01781	69	Ribosomal_L38e: Ribosomal L38e protein family; Int	100.0

>KOG3499 consensus 60S ribosomal protein L38 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.8e-46  Score=232.31  Aligned_cols=69  Identities=77%  Similarity=1.184  Sum_probs=68.2

Q ss_pred             CchhhhhHHHHHHHHhhcCCceEEEeeCCCeeeEEEeecCcEEEEEecChHHHHHhhhcCCCCCceecC
Q 035256            1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL   69 (69)
Q Consensus         1 MPkei~diK~FL~~arrkdAk~v~IKk~k~~tKFKvRcsryLYTLvv~d~~KAeKl~qSLPp~l~v~~~   69 (69)
                      ||+||+||||||++|||+||+||+||+|+++||||||||||||||||.|++|||||+|||||||+|+|+
T Consensus         1 Mpr~i~eiK~FL~~arR~Da~s~kiKkn~~~~KFKvRcsryLYTLvv~D~~KAeKlkQSLPP~l~V~el   69 (69)
T KOG3499|consen    1 MPRQITEIKDFLLTARRKDAKSVKIKKNKNNVKFKVRCSRYLYTLVVADAEKAEKLKQSLPPGLTVKEL   69 (69)
T ss_pred             CcchHHHHHHHHHHHHhcccceeEEEecCCceeEEEEeeeeeeeeeeccHHHHHHHHhcCCCCceeecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999986

>PTZ00181 60S ribosomal protein L38; Provisional

Probab=100.00  E-value=3.7e-44  Score=229.98  Aligned_cols=69  Identities=49%  Similarity=0.845  Sum_probs=67.9

Q ss_pred             CchhhhhHHHHHHHHhhcCCceEEEeeCCCeeeEEEeecCcEEEEEecChHHHHHhhhcCCCCCceecC
Q 035256            1 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL   69 (69)
Q Consensus         1 MPkei~diK~FL~~arrkdAk~v~IKk~k~~tKFKvRcsryLYTLvv~d~~KAeKl~qSLPp~l~v~~~   69 (69)
                      ||+||+|||+||++|||+||++|+||+|+++||||||||||||||+|.|.+||+||+|||||||+++++
T Consensus         1 MPkeI~dIK~FL~~arrkDAksvkIKkn~~~tKFKvRcsrYLYTLvv~D~~KA~KlkqSLPp~l~v~~v   69 (82)
T PTZ00181          1 MPREIKTLKEFLAICSRKDARCVKVKHNPSATKFKVRCSRYLYTLVVADKKKADKIERSIHPSVKKITV   69 (82)
T ss_pred             CchhHHHHHHHHHHhhccCceEEEeecCCcceEEEEEecceEEEEEeCCHHHHHHHHhcCCCCceEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999999875

>PF01781 Ribosomal_L38e: Ribosomal L38e protein family; InterPro: IPR002675 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.6e-43  Score=220.80  Aligned_cols=68  Identities=74%  Similarity=1.123  Sum_probs=62.8

Q ss_pred             chhhhhHHHHHHHHhhcCCceEEEeeCCCe-eeEEEeecCcEEEEEecChHHHHHhhhcCCCCCceecC
Q 035256            2 PKQIHEIKDFLLTARRKDARSVKIKRSRDV-VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL   69 (69)
Q Consensus         2 Pkei~diK~FL~~arrkdAk~v~IKk~k~~-tKFKvRcsryLYTLvv~d~~KAeKl~qSLPp~l~v~~~   69 (69)
                      |+||+||||||++|||+||+||+||+|+++ ||||||||||||||+|+|++|||+|+|||||||+++++
T Consensus         1 Pkqi~~iK~FL~~arrkDAksv~iKk~~~~~tKFKvRcsryLYTLvv~d~~KAeklkqSLPp~l~v~~i   69 (69)
T PF01781_consen    1 PKQIKDIKDFLETARRKDAKSVKIKKNKDNGTKFKVRCSRYLYTLVVKDKEKAEKLKQSLPPGLKVKEI   69 (69)
T ss_dssp             -THHHHHHHHHHHHCSS-EEEEEEECESSSTEEEEEECSS-EEEESS-SHHHHHHHHHSSSSSSEEEEE
T ss_pred             CcchhhHHHHHHHHhhCCCceEEEEecCCCeeEEEEEecceEEEEEEcCHHHHHHHHhhCCCCCeEeeC
Confidence            899999999999999999999999999999 99999999999999999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L38e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_n 3IZR_n 4A1D_P 4A19_P 4A18_P 4A1B_P.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
3izr_n	69	Localization Of The Large Subunit Ribosomal Protein		2e-30
3zf7_p	82	High-resolution Cryo-electron Microscopy Structure		1e-13
3izs_n	78	Localization Of The Large Subunit Ribosomal Protein		4e-09
4a18_P	89	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-04

>pdb|3IZR|NN Chain n, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 69

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 68/69 (98%)
Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSV+IKR++D VKFKVRCSKYLYTLCVFD++KA+KLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60
Query: 61 PPGLSVQDL 69
          PPGL+VQ++
Sbjct: 61 PPGLTVQEV 69

>pdb|3ZF7|PP Chain p, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 82

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I  +K+FL    RKDAR VK+K +  V KFKVRCS++LYTL + D +KADK+++S+
Sbjct: 1  MPREIKNLKEFLAICSRKDARCVKVKHNPKVTKFKVRCSRHLYTLVMADKKKADKIERSI 60
Query: 61 PPGL 64
           P +
Sbjct: 61 HPSV 64

>pdb|3IZS|NN Chain n, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 78

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSRDV---------VKFKVRCSKYLYTLCVFDSE 51
          M ++I +IK FL   RR D ++  +K ++ +          KFKVR S  LYTL + D+ 
Sbjct: 1  MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAG 60
Query: 52 KADKLKQSLPPGLSVQDL 69
          KA KL QSLPP L V  L
Sbjct: 61 KAKKLIQSLPPTLKVNRL 78

>pdb|4A18|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 89

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 1  MPKQIHEIKDFL-LTARRKDA-------RSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEK 52
          MPK+I +IK F+ L    KD        + V +K ++ + KFK+R  KYLYT    D + 
Sbjct: 1  MPKEITDIKKFMKLWQNNKDTPATAGAKKVVYVKTNKRITKFKLRGKKYLYTFKTADPKI 60
Query: 53 ADKLKQSLPPGLS 65
          A  +K ++P   S
Sbjct: 61 AKGIKDAIPATYS 73
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	8e-35
3izc_n	78	60S ribosomal protein RPL38 (L38E); eukaryotic rib	2e-29
4a18_P	89	RPL38, ribosomal protein L22; ribosome, eukaryotic	3e-19

>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P Length = 89

 Score = 73.0 bits (178), Expect = 3e-19
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 1  MPKQIHEIKDFL--------LTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEK 52
          MPK+I +IK F+          A     + V +K ++ + KFK+R  KYLYT    D + 
Sbjct: 1  MPKEITDIKKFMKLWQNNKDTPATAGAKKVVYVKTNKRITKFKLRGKKYLYTFKTADPKI 60

Query: 53 ADKLKQSLPPGLSVQDL 69
          A  +K ++P   S  ++
Sbjct: 61 AKGIKDAIPATYSKIEI 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
3iz5_n	69	60S ribosomal protein L38 (L38E); eukaryotic ribos	100.0
3izc_n	78	60S ribosomal protein RPL38 (L38E); eukaryotic rib	100.0
4a18_P	89	RPL38, ribosomal protein L22; ribosome, eukaryotic	100.0

>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P

Probab=100.00  E-value=9.1e-43  Score=225.19  Aligned_cols=69  Identities=32%  Similarity=0.557  Sum_probs=61.0

Q ss_pred             CchhhhhHHHHHHHHhhcCCceE--------EEeeCCCeeeEEEeecCcEEEEEecChHHHHHhhhcCCCCCceecC
Q 035256            1 MPKQIHEIKDFLLTARRKDARSV--------KIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL   69 (69)
Q Consensus         1 MPkei~diK~FL~~arrkdAk~v--------~IKk~k~~tKFKvRcsryLYTLvv~d~~KAeKl~qSLPp~l~v~~~   69 (69)
                      ||+||+||||||++|||+||+||        +||+|+++||||||||||||||+|+|++||++|+|||||||.++++
T Consensus         1 MPkqI~dIK~FL~~arrkDaksv~~~kkk~~~IKkn~~~tKFKvRcsryLYTLvv~D~~KAeKlkqSLPp~l~v~~i   77 (89)
T 4a18_P            1 MPKEITDIKKFMKLWQNNKDTPATAGAKKVVYVKTNKRITKFKLRGKKYLYTFKTADPKIAKGIKDAIPATYSKIEI   77 (89)
T ss_dssp             -CEEESSHHHHHHHHHC----------CCEEEEEECSSCEEEEEECSSCEEEEEECSHHHHHHHHHTCCSSSEEEEC
T ss_pred             CChhHHHHHHHHHHHHccCCceeeeccccceeEEecCCceEEEEEecCceEEEEeCCHHHHHHHHhcCCCCceEEEc
Confidence            99999999999999999999999        9999999999999999999999999999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00