Citrus Sinensis ID: 035276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MATFGAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccEEEEEEEcccccEEEEEEccccEEEEEccccccEEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccccEEEEEEEcccccEEEEccccccEEEEEcccccccEEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
MATFGAAAvatnqnpnkSIEVLCSTlkddgitvfsggcdkqvktwpllsggqpvivamhdapiktirll
Flexible Loop (DISEMBL)
MATFGAAavatnqnpnksIEVLCSTLKDDGITVFSGGCDKQVKTwpllsggqpvivamhdapiktirll
Low Complexity Region (SEG)
MATFGAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL
Disordered region (IsUnstruct)
******************IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIK*****
Disordered Region (DISOPRED)
******************IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL
Disordered Region (DISEMBL)
MATFGAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL
Disordered Region (DISPRO)
***************NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATFGAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
Q38942	349	Rae1-like protein At1g806	yes	no	0.666	0.131	0.760	3e-15
Q5RF99	368	mRNA export factor OS=Pon	yes	no	0.695	0.130	0.469	4e-05
P78406	368	mRNA export factor OS=Hom	yes	no	0.695	0.130	0.469	4e-05
Q4R6D2	368	mRNA export factor OS=Mac	N/A	no	0.695	0.130	0.469	4e-05
P40066	365	Nucleoporin GLE2 OS=Sacch	yes	no	0.739	0.139	0.442	6e-05
Q3SWS8	368	mRNA export factor OS=Rat	yes	no	0.695	0.130	0.469	8e-05
Q8C570	368	mRNA export factor OS=Mus	yes	no	0.695	0.130	0.469	8e-05
A5GFN6	368	mRNA export factor OS=Sus	yes	no	0.695	0.130	0.469	8e-05
Q5FVA9	368	mRNA export factor OS=Xen	yes	no	0.695	0.130	0.469	0.0001
Q5E9A4	368	mRNA export factor OS=Bos	yes	no	0.695	0.130	0.448	0.0001

>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 37/46 (80%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
           VLCS  KDDG TVFSGGCDKQ K WPLLSGGQPV VAMH+ PI  +
Sbjct: 75  VLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAM 120

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W  LS  Q + +A HDAP+KTI  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 136

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Pongo abelii (taxid: 9601)

>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W  LS  Q + +A HDAP+KTI  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 136

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Homo sapiens (taxid: 9606)

>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W  LS  Q + +A HDAP+KTI  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 136

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Macaca fascicularis (taxid: 9541)

>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLE2 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 18  SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           S  VLC+   +DG  V SGGCD  +K + + S GQ   + MH APIK +R +
Sbjct: 80  SSPVLCTRWSNDGTKVASGGCDNALKLYDIAS-GQTQQIGMHSAPIKVLRFV 130

Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. It is specifically important for nuclear mRNA export.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHDAPVKTIHWI 136

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Rattus norvegicus (taxid: 10116)

>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHDAPVKTIHWI 136

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Mus musculus (taxid: 10090)

>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHDAPVKTIHWI 136

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Sus scrofa (taxid: 9823)

>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W L S  Q + +A HDAPIKT+  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQSIQIAQHDAPIKTVHWV 136

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Xenopus tropicalis (taxid: 8364)

>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W L S  Q + +A HDAP+KT+  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLNS-NQAIQIAQHDAPVKTVHWI 136

Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
224075655	349	predicted protein [Populus trichocarpa]	0.666	0.131	0.891	1e-16
194466247	179	putative mRNA export protein [Arachis hy	0.840	0.324	0.709	2e-16
255572775	349	plant poly(A)+ RNA export protein, putat	0.942	0.186	0.479	4e-16
255631778	198	unknown [Glycine max]	0.666	0.232	0.847	5e-16
356558620	347	PREDICTED: rae1-like protein At1g80670-l	0.666	0.132	0.847	5e-16
356525894	347	PREDICTED: uncharacterized protein LOC10	0.666	0.132	0.847	6e-16
224053404	349	predicted protein [Populus trichocarpa]	0.666	0.131	0.847	6e-16
357445765	351	RNA export [Medicago truncatula] gi|3554	0.927	0.182	0.685	8e-16
357517225	400	Pre-mRNA-splicing factor prp46 [Medicago	0.753	0.13	0.75	9e-16
363806810	347	uncharacterized protein LOC100819240 [Gl	0.797	0.158	0.694	2e-15

>gi|224075655|ref|XP_002304718.1| predicted protein [Populus trichocarpa] gi|222842150|gb|EEE79697.1| predicted protein [Populus trichocarpa]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 41/46 (89%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
           VLCST KDDG TVFSGGCDKQVK WPLLSGGQPV VAMHDAPIK I
Sbjct: 75  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEI 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194466247|gb|ACF74354.1| putative mRNA export protein [Arachis hypogaea]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 46/62 (74%), Gaps = 4/62 (6%)

Query: 12  NQNPNKSIE----VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR 67
           N  P  SI     VLCST KDDG TVFSGGCDKQVK WPLLSGGQP+ VAMHDAPIK I 
Sbjct: 59  NSTPKASISHDQPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEIA 118

Query: 68  LL 69
            +
Sbjct: 119 WI 120

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572775|ref|XP_002527320.1| plant poly(A)+ RNA export protein, putative [Ricinus communis] gi|223533320|gb|EEF35072.1| plant poly(A)+ RNA export protein, putative [Ricinus communis]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 58/121 (47%), Gaps = 56/121 (46%)

Query: 1   MATFGAAAVATNQNPNKSIEV----------LC--------------------------- 23
           MATFGAAA A NQNPNKSIEV          LC                           
Sbjct: 1   MATFGAAATA-NQNPNKSIEVSQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEITRNGT 59

Query: 24  ------------------STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKT 65
                             S  KDDG TVFSGGCDKQVK WPLLSGGQPV VAMHDAPIK 
Sbjct: 60  TIGSVPKTQITHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKE 119

Query: 66  I 66
           I
Sbjct: 120 I 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255631778|gb|ACU16256.1| unknown [Glycine max]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 41/46 (89%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
           VLCST KDDG TVFSGGCDKQVK WPLLSGGQP+ VAMHDAPIK +
Sbjct: 73  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEV 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558620|ref|XP_003547602.1| PREDICTED: rae1-like protein At1g80670-like [Glycine max]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/46 (84%), Positives = 41/46 (89%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
           VLCST KDDG TVFSGGCDKQVK WPLLSGGQP+ VAMHDAPIK +
Sbjct: 73  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEL 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525894|ref|XP_003531556.1| PREDICTED: uncharacterized protein LOC100527204 [Glycine max]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 41/46 (89%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
           VLCST KDDG TVFSGGCDKQVK WPLLSGGQP+ VAMHDAPIK +
Sbjct: 73  VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEV 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053404|ref|XP_002297802.1| predicted protein [Populus trichocarpa] gi|222845060|gb|EEE82607.1| predicted protein [Populus trichocarpa]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 41/46 (89%)

Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
           VLCS+ KDDG TVFSGGCDKQVK WPLLSGGQPV +AMHDAPIK I
Sbjct: 75  VLCSSWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTIAMHDAPIKEI 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445765|ref|XP_003593160.1| RNA export [Medicago truncatula] gi|355482208|gb|AES63411.1| RNA export [Medicago truncatula]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 50/70 (71%), Gaps = 6/70 (8%)

Query: 1   MATFGAAAVATNQNPNKSIE----VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV 56
           +A  GA  VAT   P  SI     VLCS  KDDG TVFSGGCDKQVK WPLLSGGQP+ V
Sbjct: 55  VARDGANNVATM--PKASIAHDHPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPITV 112

Query: 57  AMHDAPIKTI 66
           AMHDAPIK I
Sbjct: 113 AMHDAPIKDI 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517225|ref|XP_003628901.1| Pre-mRNA-splicing factor prp46 [Medicago truncatula] gi|355522923|gb|AET03377.1| Pre-mRNA-splicing factor prp46 [Medicago truncatula]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/56 (75%), Positives = 42/56 (75%), Gaps = 4/56 (7%)

Query: 15  PNKSIE----VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
           P  SI     VLCS  KDDG TVFSGGCDKQ K WPLLSGGQPV VAMHDAPIK I
Sbjct: 64  PKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHDAPIKEI 119

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806810|ref|NP_001242030.1| uncharacterized protein LOC100819240 [Glycine max] gi|255638763|gb|ACU19686.1| unknown [Glycine max]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 44/59 (74%), Gaps = 4/59 (6%)

Query: 12  NQNPNKSIE----VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
           N  P  SI     VLCS  KDDG TVFSGGCDKQVK WPL+SGGQP+ VAMHDAP+K I
Sbjct: 60  NSTPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLMSGGQPMTVAMHDAPVKDI 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
TAIR|locus:2025732	349	RAE1 "AT1G80670" [Arabidopsis	0.623	0.123	0.813	8.8e-15
TAIR|locus:2036159	140	AT1G15850 "AT1G15850" [Arabido	0.666	0.328	0.739	2.3e-14
UNIPROTKB|B0QZ36	137	RAE1 "mRNA export factor" [Hom	0.550	0.277	0.538	1.3e-06
UNIPROTKB|E1BVV3	214	Gga.22300 "Uncharacterized pro	0.652	0.210	0.5	3.1e-06
UNIPROTKB|P78406	368	RAE1 "mRNA export factor" [Hom	0.550	0.103	0.538	8.3e-06
SGD|S000000909	365	GLE2 "RNA export factor associ	0.739	0.139	0.442	1e-05
UNIPROTKB|E1C7F8	368	Gga.22300 "Uncharacterized pro	0.652	0.122	0.5	1.1e-05
UNIPROTKB|Q7ZZY7	368	Rae1/Gle2 "Rae1/Gle2" [Xenopus	0.550	0.103	0.538	1.4e-05
UNIPROTKB|E2RSV2	368	RAE1 "Uncharacterized protein"	0.550	0.103	0.538	1.8e-05
UNIPROTKB|A5GFN6	368	RAE1 "mRNA export factor" [Sus	0.550	0.103	0.538	1.8e-05

TAIR|locus:2025732 RAE1 "AT1G80670" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 35/43 (81%), Positives = 36/43 (83%)

Query:    21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPI 63
             VLCS  KDDG TVFSGGCDKQ K WPLLSGGQPV VAMH+ PI
Sbjct:    75 VLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPI 117

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

TAIR|locus:2036159 AT1G15850 "AT1G15850" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 34/46 (73%), Positives = 35/46 (76%)

Query:    21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
             VLCS  KDDG TVF+GGCDKQ K WPLLSG QP  VAMHDAP   I
Sbjct:    76 VLCSAWKDDGTTVFTGGCDKQAKMWPLLSGAQPSTVAMHDAPFNQI 121

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|B0QZ36 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:    28 DDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
             DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI
Sbjct:    96 DDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTI 133

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|E1BVV3 Gga.22300 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 23/46 (50%), Positives = 27/46 (58%)

Query:    21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
             VL     DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI
Sbjct:    89 VLDGCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTI 133

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|P78406 RAE1 "mRNA export factor" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:    28 DDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
             DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI
Sbjct:    96 DDGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTI 133

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISS

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005640 "nuclear outer membrane" evidence=TAS

GO:0005643 "nuclear pore" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0006406 "mRNA export from nucleus" evidence=TAS

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

SGD|S000000909 GLE2 "RNA export factor associated with the nuclear pore complex (NPC)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query:    18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
             S  VLC+   +DG  V SGGCD  +K + + SG Q   + MH APIK +R +
Sbjct:    80 SSPVLCTRWSNDGTKVASGGCDNALKLYDIASG-QTQQIGMHSAPIKVLRFV 130

GO:0005643 "nuclear pore" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0000973 "posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery" evidence=IMP

GO:0000972 "transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0051028 "mRNA transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031081 "nuclear pore distribution" evidence=IMP

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:2000728 "regulation of mRNA export from nucleus in response to heat stress" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

UNIPROTKB|E1C7F8 Gga.22300 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 110 (43.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 23/46 (50%), Positives = 27/46 (58%)

Query:    21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
             VL     DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI
Sbjct:    89 VLDGCWSDDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTI 133

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|Q7ZZY7 Rae1/Gle2 "Rae1/Gle2" [Xenopus laevis (taxid:8355)]

 Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:    28 DDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
             DDG  VF+  CDK  K W L S  Q + +A HDAPIKT+
Sbjct:    96 DDGTKVFTASCDKTAKMWDLNSN-QSIQIAQHDAPIKTV 133

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=IDA

UNIPROTKB|E2RSV2 RAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:    28 DDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
             DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI
Sbjct:    96 DDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTI 133

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

UNIPROTKB|A5GFN6 RAE1 "mRNA export factor" [Sus scrofa (taxid:9823)]

 Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:    28 DDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI 66
             DDG  VF+  CDK  K W L S  Q + +A HDAP+KTI
Sbjct:    96 DDGSKVFTASCDKTAKMWDLNSN-QAIQIAQHDAPVKTI 133

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071407 "cellular response to organic cyclic compound" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38942	RAE1L_ARATH	No assigned EC number	0.7608	0.6666	0.1318	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.57
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.37
KOG0266	456	consensus WD40 repeat-containing protein [General	99.34
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.34
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.33
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.32
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.29
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.28
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.26
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.25
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.24
KOG1273	405	consensus WD40 repeat protein [General function pr	99.21
KOG0266	456	consensus WD40 repeat-containing protein [General	99.2
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.17
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.17
KOG0286	343	consensus G-protein beta subunit [General function	99.17
PTZ00421	493	coronin; Provisional	99.14
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.11
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.11
PTZ00421	493	coronin; Provisional	99.09
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.09
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.07
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.07
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.07
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.06
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.03
PTZ00420	568	coronin; Provisional	99.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.0
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.99
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.97
KOG0645	312	consensus WD40 repeat protein [General function pr	98.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.93
KOG0286	343	consensus G-protein beta subunit [General function	98.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.91
KOG0643	327	consensus Translation initiation factor 3, subunit	98.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.89
KOG1539	910	consensus WD repeat protein [General function pred	98.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.88
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	98.87
KOG0284	464	consensus Polyadenylation factor I complex, subuni	98.87
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	98.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.86
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.86
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.85
KOG0645	312	consensus WD40 repeat protein [General function pr	98.85
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	98.85
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	98.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.84
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.83
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	98.83
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.82
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.82
KOG0289	506	consensus mRNA splicing factor [General function p	98.81
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.81
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.81
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.81
KOG0296	399	consensus Angio-associated migratory cell protein	98.79
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	98.79
PTZ00420	568	coronin; Provisional	98.78
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.78
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.77
KOG0316	307	consensus Conserved WD40 repeat-containing protein	98.77
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	98.76
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.76
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.75
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.75
KOG0283	712	consensus WD40 repeat-containing protein [Function	98.75
KOG0284	464	consensus Polyadenylation factor I complex, subuni	98.74
KOG0296	399	consensus Angio-associated migratory cell protein	98.73
KOG1273	405	consensus WD40 repeat protein [General function pr	98.72
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.71
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.7
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.7
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.7
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.68
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.67
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.67
KOG0295	406	consensus WD40 repeat-containing protein [Function	98.67
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.63
PLN00181	793	protein SPA1-RELATED; Provisional	98.63
KOG0641	350	consensus WD40 repeat protein [General function pr	98.62
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.62
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.62
KOG2096	420	consensus WD40 repeat protein [General function pr	98.61
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	98.6
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.58
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.58
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.56
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.55
KOG0772	641	consensus Uncharacterized conserved protein, conta	98.55
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.55
PLN00181	793	protein SPA1-RELATED; Provisional	98.54
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.53
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.51
KOG1310	758	consensus WD40 repeat protein [General function pr	98.49
KOG0267	825	consensus Microtubule severing protein katanin p80	98.49
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.49
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.48
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.48
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.46
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.46
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.46
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.45
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.45
KOG0641	350	consensus WD40 repeat protein [General function pr	98.44
KOG0646	476	consensus WD40 repeat protein [General function pr	98.43
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.43
KOG0643	327	consensus Translation initiation factor 3, subunit	98.43
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.43
KOG0289	506	consensus mRNA splicing factor [General function p	98.42
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.42
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.42
KOG0267	825	consensus Microtubule severing protein katanin p80	98.41
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.4
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.4
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.39
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.38
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.38
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.37
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.36
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.35
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.34
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	98.34
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.33
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.31
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.3
KOG1274	933	consensus WD40 repeat protein [General function pr	98.3
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.3
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.28
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.28
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.27
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.27
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.27
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.25
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.25
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.23
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.22
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.21
KOG0640	430	consensus mRNA cleavage stimulating factor complex	98.21
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.2
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.2
KOG2048	691	consensus WD40 repeat protein [General function pr	98.18
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.16
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.15
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.13
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.12
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.12
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.11
KOG0649	325	consensus WD40 repeat protein [General function pr	98.09
KOG1963	792	consensus WD40 repeat protein [General function pr	98.09
COG2319	466	FOG: WD40 repeat [General function prediction only	98.08
KOG0639	705	consensus Transducin-like enhancer of split protei	98.08
KOG2096	420	consensus WD40 repeat protein [General function pr	98.07
KOG4547	541	consensus WD40 repeat-containing protein [General	98.05
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.04
KOG0639	705	consensus Transducin-like enhancer of split protei	98.02
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.01
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.01
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.0
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.0
KOG0646	476	consensus WD40 repeat protein [General function pr	97.99
KOG0771	398	consensus Prolactin regulatory element-binding pro	97.98
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	97.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	97.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	97.96
KOG0290	364	consensus Conserved WD40 repeat-containing protein	97.95
KOG0649	325	consensus WD40 repeat protein [General function pr	97.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	97.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	97.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	97.93
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	97.91
KOG2139	445	consensus WD40 repeat protein [General function pr	97.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	97.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	97.83
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	97.83
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.82
KOG1274	933	consensus WD40 repeat protein [General function pr	97.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.63
KOG4328	498	consensus WD40 protein [Function unknown]	97.62
KOG4283	397	consensus Transcription-coupled repair protein CSA	97.6
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.57
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.48
KOG1188	376	consensus WD40 repeat protein [General function pr	97.47
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.45
PRK05137	435	tolB translocation protein TolB; Provisional	97.44
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	97.43
KOG0270	463	consensus WD40 repeat-containing protein [Function	97.42
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	97.4
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.39
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.37
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.36
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.36
KOG4328	498	consensus WD40 protein [Function unknown]	97.34
KOG4227	609	consensus WD40 repeat protein [General function pr	97.33
PRK01742	429	tolB translocation protein TolB; Provisional	97.31
PRK01742	429	tolB translocation protein TolB; Provisional	97.28
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.28
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	97.27
COG2319	466	FOG: WD40 repeat [General function prediction only	97.24
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.2
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.2
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.15
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.11
PRK02889	427	tolB translocation protein TolB; Provisional	97.1
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.08
KOG2048	691	consensus WD40 repeat protein [General function pr	97.06
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.04
KOG2055	514	consensus WD40 repeat protein [General function pr	97.04
KOG1334	559	consensus WD40 repeat protein [General function pr	97.01
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.0
KOG2055	514	consensus WD40 repeat protein [General function pr	96.98
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	96.88
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.84
PRK04922	433	tolB translocation protein TolB; Provisional	96.81
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.8
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.79
KOG2106	626	consensus Uncharacterized conserved protein, conta	96.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	96.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	96.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.57
KOG1188	376	consensus WD40 repeat protein [General function pr	96.54
KOG3881	412	consensus Uncharacterized conserved protein [Funct	96.51
PRK03629	429	tolB translocation protein TolB; Provisional	96.5
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	96.5
PRK00178	430	tolB translocation protein TolB; Provisional	96.49
KOG2111	346	consensus Uncharacterized conserved protein, conta	96.43
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.42
PRK03629	429	tolB translocation protein TolB; Provisional	96.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	96.22
KOG1539	910	consensus WD repeat protein [General function pred	96.22
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	96.15
PRK05137	435	tolB translocation protein TolB; Provisional	96.13
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	96.13
KOG2321	703	consensus WD40 repeat protein [General function pr	96.12
KOG1310	758	consensus WD40 repeat protein [General function pr	96.11
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	96.11
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	96.06
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.95
KOG2695	425	consensus WD40 repeat protein [General function pr	95.92
PRK01029	428	tolB translocation protein TolB; Provisional	95.87
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.83
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.77
PRK04792	448	tolB translocation protein TolB; Provisional	95.71
KOG1963	792	consensus WD40 repeat protein [General function pr	95.63
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	95.61
PRK04922	433	tolB translocation protein TolB; Provisional	95.53
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	95.52
PRK11028	330	6-phosphogluconolactonase; Provisional	95.4
PRK02889	427	tolB translocation protein TolB; Provisional	95.33
KOG1334	559	consensus WD40 repeat protein [General function pr	95.3
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.29
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.18
PRK00178	430	tolB translocation protein TolB; Provisional	95.1
KOG4227	609	consensus WD40 repeat protein [General function pr	95.09
KOG2321	703	consensus WD40 repeat protein [General function pr	95.09
KOG2139	445	consensus WD40 repeat protein [General function pr	94.81
KOG4547	541	consensus WD40 repeat-containing protein [General	94.78
KOG3881	412	consensus Uncharacterized conserved protein [Funct	94.73
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	94.71
KOG4714	319	consensus Nucleoporin [Nuclear structure]	94.7
PRK04792	448	tolB translocation protein TolB; Provisional	94.29
PRK11028	330	6-phosphogluconolactonase; Provisional	94.24
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	94.06
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	94.05
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	94.0
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.89
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	93.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	93.69
COG4946	668	Uncharacterized protein related to the periplasmic	93.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	93.48
KOG3621	726	consensus WD40 repeat-containing protein [General	93.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	93.14
KOG2315	566	consensus Predicted translation initiation factor	93.01
PRK01029	428	tolB translocation protein TolB; Provisional	92.71
KOG2314	698	consensus Translation initiation factor 3, subunit	92.56
KOG2315	566	consensus Predicted translation initiation factor	92.36
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	92.29
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	91.99
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.86
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	91.6
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.6
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.01
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	90.74
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	90.71
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	90.47
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.32
KOG1912	1062	consensus WD40 repeat protein [General function pr	90.11
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.66
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.62
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.54
KOG2041	1189	consensus WD40 repeat protein [General function pr	89.42
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.37
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	89.03
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	88.9
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	88.82
PRK04043	419	tolB translocation protein TolB; Provisional	88.64
KOG1409	404	consensus Uncharacterized conserved protein, conta	88.6
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	88.51
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	88.49
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	88.27
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	87.68
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.51
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	87.14
KOG1912	1062	consensus WD40 repeat protein [General function pr	87.06
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	87.0
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	86.87
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	86.76
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	86.67
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	86.51
PRK04043	419	tolB translocation protein TolB; Provisional	85.63
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	85.49
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	85.08
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	84.79
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	84.76
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.05
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	83.9
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	83.65
KOG3621	726	consensus WD40 repeat-containing protein [General	83.33
PF08954	136	DUF1900: Domain of unknown function (DUF1900); Int	83.32
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	82.8
PRK02888	635	nitrous-oxide reductase; Validated	82.75
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	82.33
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	81.99
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	81.89
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	81.79
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	81.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	81.76
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	81.46
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	81.05
KOG2395	644	consensus Protein involved in vacuole import and d	80.64

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=1.6e-14  Score=88.25  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             cchhhhh--hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            4 FGAAAVA--TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         4 ~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      |+--+|.  ...+.+|..+|++++|+|+|+.|++|+.|.++|+||+.+...+.+.++|..+|.|++||
T Consensus        99 frvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaws  166 (480)
T KOG0271|consen   99 FRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWS  166 (480)
T ss_pred             hcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEEC
Confidence            3333444  45677999999999999999999999999999999999988889999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=1.1e-12  Score=80.36  Aligned_cols=56  Identities=23%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc-EEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP-VIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~-~~~~~h~~~i~~v~~   68 (69)
                      ...+|...|++++|+|||+.|++|+-|+.|++||-++|+++ ..+.+|.++|.+++|
T Consensus       152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Law  208 (480)
T KOG0271|consen  152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAW  208 (480)
T ss_pred             eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEee
Confidence            34579999999999999999999999999999999998776 679999999999988

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.34  E-value=6.5e-12  Score=78.65  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+.+|...|.+++|+|+++.+++|+.|++|++||++++++...+.+|..+|.++.|+
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~  297 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS  297 (456)
T ss_pred             EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence            345566999999999999999999999999999999999999999999999999999885

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.34  E-value=2.2e-12  Score=79.45  Aligned_cols=56  Identities=16%  Similarity=0.331  Sum_probs=52.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.+|..+|++++|+|+|-.|++|+.|++++|||+.....+..+++|..-|+.|+|+
T Consensus       341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~  396 (459)
T KOG0272|consen  341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYS  396 (459)
T ss_pred             ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEec
Confidence            45799999999999999999999999999999999888889999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.33  E-value=3.1e-12  Score=78.80  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+..+|+.+|.+++|.+||..+++|+.|..-++||+.+|.++..+.+|.++|..|.||
T Consensus       294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs  354 (459)
T KOG0272|consen  294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS  354 (459)
T ss_pred             hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence            3455677999999999999999999999999999999999999999999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.32  E-value=5.7e-12  Score=74.58  Aligned_cols=63  Identities=19%  Similarity=0.229  Sum_probs=58.0

Q ss_pred             hhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         7 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .++..+...+|+..|.++..++||++.+++++|+++++||+.+++..+.+.+|...|.+++||
T Consensus        52 ~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s  114 (315)
T KOG0279|consen   52 YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS  114 (315)
T ss_pred             cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec
Confidence            346677888999999999999999999999999999999999988888899999999999986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.29  E-value=7.8e-12  Score=80.86  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+...+|.++|.+++|||+|++|++|+.|+.|++||+.+++.+..+.+|..-|.++.||
T Consensus       568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS  628 (707)
T KOG0263|consen  568 NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS  628 (707)
T ss_pred             cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEe
Confidence            3355667899999999999999999999999999999999988888899999999999986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.28  E-value=1.9e-11  Score=73.08  Aligned_cols=55  Identities=51%  Similarity=0.728  Sum_probs=50.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ....|.+||++++|+.||..+++|+.|+.+++||+.++ +...+..|..+|.+++|
T Consensus        67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~w  121 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHW  121 (347)
T ss_pred             hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEE
Confidence            44568999999999999999999999999999999996 77888899999999988

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.26  E-value=1.6e-11  Score=79.45  Aligned_cols=57  Identities=23%  Similarity=0.201  Sum_probs=53.5

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|++||..+.|+|+.++|++|++|+++|+|.+.+-.+...+++|..||+.++|+
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~  502 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA  502 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec
Confidence            366899999999999999999999999999999999988888889999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.25  E-value=2.9e-11  Score=78.75  Aligned_cols=56  Identities=21%  Similarity=0.300  Sum_probs=52.5

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .++|...+.+++++|||+++++|+.|++|++||..+|-|+.++..|...|..+.|+
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~  401 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT  401 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence            45799999999999999999999999999999999999999999999999999874

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=1.4e-11  Score=72.01  Aligned_cols=59  Identities=27%  Similarity=0.325  Sum_probs=55.3

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ++...+|..+|++++.+.|...+++|+.|+.+++||+++|+..+.+.+|...|+.++|+
T Consensus        52 iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN  110 (307)
T KOG0316|consen   52 IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN  110 (307)
T ss_pred             eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence            45667899999999999999999999999999999999999999999999999999986

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=6.2e-11  Score=71.51  Aligned_cols=63  Identities=21%  Similarity=0.311  Sum_probs=50.5

Q ss_pred             CcccchhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276            1 MATFGAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      |+||+.+    +.+..|..||.+++||+||+.|++++.|..+.+||+..|.+++.+. -..+|+.+.|
T Consensus        52 ~~T~~ia----r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~  114 (405)
T KOG1273|consen   52 FDTFRIA----RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQW  114 (405)
T ss_pred             ccccchh----hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeee
Confidence            5677733    4556899999999999999999999999999999999988766553 4556665554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.20  E-value=1e-10  Score=73.28  Aligned_cols=58  Identities=19%  Similarity=0.299  Sum_probs=51.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEEC-CCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPL-LSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~-~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|...|.+++|+||++++++++.|+++++||+ ..+.+++.+.+|...|.++.|+
T Consensus       197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~  255 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS  255 (456)
T ss_pred             ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec
Confidence            344789999999999999999999999999999999 4456778899999999999985

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.17  E-value=7.3e-11  Score=50.89  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=32.6

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWP   46 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd   46 (69)
                      ....+|..+|.+++|+|++++|++++.|+.|++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678999999999999999999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.17  E-value=9e-11  Score=69.59  Aligned_cols=62  Identities=19%  Similarity=0.281  Sum_probs=54.0

Q ss_pred             hhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccC--CCcEEEEEeC
Q 035276            7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMH--DAPIKTIRLL   69 (69)
Q Consensus         7 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h--~~~i~~v~~s   69 (69)
                      +++.+.+..+|..-|++++|++|.+.+++|+.|++|++|++.. .+..++..+  ..+|.|+.|+
T Consensus        94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEc
Confidence            3466788889999999999999999999999999999999987 677766544  7899999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.17  E-value=1.1e-10  Score=69.75  Aligned_cols=62  Identities=31%  Similarity=0.492  Sum_probs=56.4

Q ss_pred             hhhhhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276            7 AAVATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus         7 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ++..+....+|.+-|++++++| +++.+++|+.|+..++||+..+.+.+.+.+|...|+.++|
T Consensus       175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f  237 (343)
T KOG0286|consen  175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF  237 (343)
T ss_pred             cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence            3445556679999999999999 9999999999999999999999999999999999999987

>PTZ00421 coronin; Provisional

Probab=99.14  E-value=4.2e-10  Score=71.38  Aligned_cols=56  Identities=13%  Similarity=0.210  Sum_probs=48.7

Q ss_pred             CCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCC-------ccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGG-------QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~-------~~~~~~~h~~~i~~v~~s   69 (69)
                      +.+|.++|.+++|+| +++.|++++.|++|++||+.++.       .+..+.+|...|.+++|+
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~  134 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH  134 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeC
Confidence            457999999999999 88999999999999999997642       345778999999999985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.11  E-value=2.5e-10  Score=69.84  Aligned_cols=60  Identities=13%  Similarity=0.172  Sum_probs=54.0

Q ss_pred             hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+-+.+|.+.|.++++.|..+++++|+.|++++|||+.+|....++.+|-..|+.+++|
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS  202 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVS  202 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeec
Confidence            344566899999999999999999999999999999999988888899999999998875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.11  E-value=4.5e-10  Score=66.11  Aligned_cols=61  Identities=15%  Similarity=0.089  Sum_probs=52.1

Q ss_pred             hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-CccEEeccCCCcEEEEEeC
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG-GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~-~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.+...+.|++-++.|.||||+++|++++.|++++||++++- +....+.+|..+++.++||
T Consensus       206 ~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS  267 (311)
T KOG0315|consen  206 EPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS  267 (311)
T ss_pred             eEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence            345567788999999999999999999999999999999874 3335678999999999997

>PTZ00421 coronin; Provisional

Probab=99.09  E-value=7.3e-10  Score=70.29  Aligned_cols=58  Identities=16%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+|...|.+++|+|++ ..|++++.|++|++||++++..+..+.+|...|.+++|+
T Consensus       119 ~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421        119 VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN  177 (493)
T ss_pred             EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence            3456799999999999986 689999999999999999987778888999999999985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.09  E-value=3.6e-10  Score=73.39  Aligned_cols=56  Identities=14%  Similarity=0.203  Sum_probs=52.9

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+.+|...|.++.|+|..+.+++++.|++|+||.+.+..|+.++.||...|..+.|
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F  555 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF  555 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence            45689999999999999999999999999999999999999999999999998887

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.07  E-value=4.4e-10  Score=66.15  Aligned_cols=57  Identities=16%  Similarity=0.177  Sum_probs=50.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+.+|...+.+++||.||++|++++.|..+++||+..++.++...+|.+...|++.
T Consensus       252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence            356688899999999999999999999999999999999888888899888777764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=4.7e-10  Score=68.46  Aligned_cols=56  Identities=14%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+.+|...|.+++|+|.|++|+++..|+++++||++.+.|+..+..|..-+.++.|
T Consensus       329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf  384 (406)
T KOG0295|consen  329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF  384 (406)
T ss_pred             EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence            45689999999999999999999999999999999999999888899888888766

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.07  E-value=6.5e-11  Score=71.96  Aligned_cols=53  Identities=21%  Similarity=0.346  Sum_probs=49.8

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v~~s   69 (69)
                      +..+|+++.|+.|.+.|++|+.||+|++|.+++|.|++.+. .|...|.|+.||
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS  315 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS  315 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence            67899999999999999999999999999999999998875 899999999986

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.06  E-value=5.1e-10  Score=67.06  Aligned_cols=69  Identities=19%  Similarity=0.313  Sum_probs=50.8

Q ss_pred             Ccccchhhhhhcc---------CCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCC-Cc-cEEeccCCCcEEEEEe
Q 035276            1 MATFGAAAVATNQ---------NPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSG-GQ-PVIVAMHDAPIKTIRL   68 (69)
Q Consensus         1 ~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~-~~-~~~~~~h~~~i~~v~~   68 (69)
                      |++||+.+.....         ....+..|..++|||.. ..++.+++|++||+|+++.. .. ......|.++|.++.|
T Consensus         1 ms~Fg~~~~~~~~~~~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~W   80 (347)
T KOG0647|consen    1 MSLFGSSASAQTTADPNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCW   80 (347)
T ss_pred             CCccCCcccccccCCcccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEE
Confidence            8899955544322         12356778899999954 45668999999999999863 22 2456789999999999


Q ss_pred             C
Q 035276           69 L   69 (69)
Q Consensus        69 s   69 (69)
                      +
T Consensus        81 s   81 (347)
T KOG0647|consen   81 S   81 (347)
T ss_pred             c
Confidence            6

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.03  E-value=7.4e-10  Score=66.30  Aligned_cols=53  Identities=23%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI   66 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v   66 (69)
                      ..+|++.|+.+.|++|++.|++++.|++++.||.++|++.+.+++|..-++.+
T Consensus        86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~  138 (338)
T KOG0265|consen   86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL  138 (338)
T ss_pred             eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Confidence            34899999999999999999999999999999999999999999998887765

>PTZ00420 coronin; Provisional

Probab=99.00  E-value=3.2e-09  Score=68.42  Aligned_cols=57  Identities=16%  Similarity=0.222  Sum_probs=47.9

Q ss_pred             cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCc--------cEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQ--------PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~--------~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|..+|.+++|+|+ +..|++|+.|++|++||+.++..        +..+.+|...|.+++|+
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~  134 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWN  134 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEEC
Confidence            45689999999999997 78999999999999999976421        23567899999999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.00  E-value=2.4e-09  Score=66.33  Aligned_cols=60  Identities=18%  Similarity=0.274  Sum_probs=50.5

Q ss_pred             hhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEeC
Q 035276           10 ATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .......|+++|.+++|+|-+ ..|++|+.|++|++||++. ..++..+.+|...|..|.||
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS  325 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS  325 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence            344566799999999999955 4678999999999999976 34567889999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.1e-09  Score=64.56  Aligned_cols=65  Identities=14%  Similarity=0.289  Sum_probs=53.3

Q ss_pred             cchhhhhhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEeC
Q 035276            4 FGAAAVATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         4 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~s   69 (69)
                      ++.+.+... ++.|..++++|.|++ +...|++|+.|+.|+.||+..-+ .+.++.+|...|+.++||
T Consensus       177 vr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S  243 (311)
T KOG0277|consen  177 VRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS  243 (311)
T ss_pred             ecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence            344555554 778999999999999 45677999999999999998743 457789999999999986

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.99  E-value=1.4e-09  Score=69.07  Aligned_cols=52  Identities=19%  Similarity=0.279  Sum_probs=46.6

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .-+.+++|+|+|||++|++|+.|.-|.+|.+..++.+.--++|..+|..|+|
T Consensus       331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF  382 (636)
T KOG2394|consen  331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF  382 (636)
T ss_pred             hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence            4567899999999999999999999999999886666666899999999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.97  E-value=2.2e-09  Score=70.28  Aligned_cols=59  Identities=20%  Similarity=0.286  Sum_probs=46.9

Q ss_pred             hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEe
Q 035276           10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRL   68 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~   68 (69)
                      -..+...|.++|+++.|+|++.+|++||.|++|++||..+++....+ -....++.+++|
T Consensus       212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW  271 (839)
T KOG0269|consen  212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW  271 (839)
T ss_pred             HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee
Confidence            34456689999999999999999999999999999999865432222 234577888888

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.97  E-value=1.3e-09  Score=66.75  Aligned_cols=57  Identities=19%  Similarity=0.327  Sum_probs=50.3

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+.+|++.|+++.|.  .+.+++|+.|.+|++||+++|+++..+-+|...|..+.|+
T Consensus       230 ~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~  286 (499)
T KOG0281|consen  230 LKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS  286 (499)
T ss_pred             HHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence            34567899999999996  4689999999999999999999999888999999888875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=5.3e-09  Score=62.09  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC--CccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG--GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~--~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+|...|.+++|+|.|++|++++-|.++.||.-..+  ++...+.+|...|.+++||
T Consensus        57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws  114 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS  114 (312)
T ss_pred             cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc
Confidence            3478999999999999999999999999999997764  3567789999999999996

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.93  E-value=2e-09  Score=66.16  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=52.1

Q ss_pred             chhhhhhccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCcc--EEeccCCCcEEEEEeC
Q 035276            5 GAAAVATNQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQP--VIVAMHDAPIKTIRLL   69 (69)
Q Consensus         5 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~--~~~~~h~~~i~~v~~s   69 (69)
                      |.=.|..+...+|+..|-+++|||. ...+++|+.|++|+|||+..+.+.  .....|...|+.+.||
T Consensus       244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn  311 (440)
T KOG0302|consen  244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN  311 (440)
T ss_pred             CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence            4445566666789999999999995 567899999999999999986332  3347899999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.91  E-value=9.9e-09  Score=61.50  Aligned_cols=59  Identities=8%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ++.+.+|.+.|.++.|++|+++|++++.||++.+||..|..+...++-...+|..++|+
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~s  106 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYS  106 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEEC
Confidence            35677899999999999999999999999999999999877777788888999988885

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.91  E-value=1.3e-08  Score=57.48  Aligned_cols=57  Identities=21%  Similarity=0.378  Sum_probs=49.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|..+|.+++|+|+++.|++++.|+.+++||+.+++....+..|...+..+.|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~   60 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS   60 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEEC
Confidence            445899999999999999999999999999999999877667778888888777763

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=98.91  E-value=7.7e-09  Score=61.47  Aligned_cols=58  Identities=19%  Similarity=0.380  Sum_probs=49.9

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +....+|.+.|++|+.+-+.+++++|+.|.++++||+++|+++..+. ...+|+.+.|+
T Consensus        45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~  102 (327)
T KOG0643|consen   45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFS  102 (327)
T ss_pred             eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeec
Confidence            44567899999999999999999999999999999999998877764 55677777764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.89  E-value=3.8e-09  Score=68.96  Aligned_cols=56  Identities=13%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|.+.|+++.|+. ..+|++++.|++|++|++....|+..+ .|...|+||+|+
T Consensus       363 ~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn  418 (712)
T KOG0283|consen  363 CEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN  418 (712)
T ss_pred             hhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence            34558999999999996 567999999999999999987787777 599999999995

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=98.89  E-value=7.1e-09  Score=68.38  Aligned_cols=58  Identities=19%  Similarity=0.249  Sum_probs=46.7

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+..-+|+..|.+.+|||||++|++++.|++|++||+.++.++..+. -..+...+.||
T Consensus       569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~S  626 (910)
T KOG1539|consen  569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFS  626 (910)
T ss_pred             hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEEC
Confidence            34556899999999999999999999999999999999987766552 34455555554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.88  E-value=4.9e-09  Score=62.06  Aligned_cols=59  Identities=17%  Similarity=0.267  Sum_probs=53.6

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+..|.....++.|+|+|+++++|+.|-.+.+||++..-|.+.+..+.-+|+.+.||
T Consensus       182 v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS  240 (313)
T KOG1407|consen  182 VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS  240 (313)
T ss_pred             ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence            44556788889999999999999999999999999998878889999999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.87  E-value=5.2e-09  Score=68.21  Aligned_cols=57  Identities=16%  Similarity=0.318  Sum_probs=53.2

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      ++...+|...|+.+.|-.+++.|++++.||-+++|++.++.|+..+.+|..+|+.++
T Consensus       540 lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~  596 (775)
T KOG0319|consen  540 LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS  596 (775)
T ss_pred             eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence            456778999999999999999999999999999999999999999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=98.87  E-value=3.9e-09  Score=65.32  Aligned_cols=58  Identities=17%  Similarity=0.172  Sum_probs=54.1

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.+.+|..-|.+++|.|....|++++.|..|++||..++.|+.++.+|..-|..++|+
T Consensus       216 ~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~  273 (464)
T KOG0284|consen  216 RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFN  273 (464)
T ss_pred             heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEc
Confidence            4557899999999999999999999999999999999999999999999999999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=98.87  E-value=1.5e-08  Score=60.80  Aligned_cols=60  Identities=17%  Similarity=0.289  Sum_probs=51.2

Q ss_pred             hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc--cEEeccCCCcEEEEEeC
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ--PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~--~~~~~~h~~~i~~v~~s   69 (69)
                      +.+-..++|.++|..+.|+|+|+.+++|+.|..|.+|++.. .|  ...+.+|.+.|..+.|.
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~   99 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGM   99 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeec
Confidence            34556789999999999999999999999999999999764 33  45678999999998874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.86  E-value=8.5e-09  Score=64.38  Aligned_cols=54  Identities=19%  Similarity=0.355  Sum_probs=50.6

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+|...+++++.++||++|++|+.|..|+|||..+.+.+..+.+|...|.+++|
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~f  252 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAF  252 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeee
Confidence            378899999999999999999999999999999998888889999999999887

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.86  E-value=8.3e-09  Score=67.69  Aligned_cols=58  Identities=17%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEe
Q 035276           10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~   68 (69)
                      .+.-+.+|++||.+++|+|++..|+++++|++|++||+.... ...++ .+...+..++|
T Consensus       470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsf  528 (893)
T KOG0291|consen  470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSF  528 (893)
T ss_pred             eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEE
Confidence            345567999999999999999999999999999999997642 22333 24444444444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.85  E-value=1.6e-08  Score=64.22  Aligned_cols=65  Identities=17%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             chhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec---cCCCcEEEEEeC
Q 035276            5 GAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA---MHDAPIKTIRLL   69 (69)
Q Consensus         5 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~---~h~~~i~~v~~s   69 (69)
                      |++-........|..-|.++.|+|||+++++.+.|+++.+||=.+|+.+..+.   +|.+.|..+.|+
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs  244 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS  244 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC
Confidence            44444455556788889999999999999999999999999999999888886   899999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=1.7e-08  Score=59.92  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=49.6

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC---ccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG---QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~---~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+|..+|.+++|+++|++|++|+.|+.|-+|.+..+.   +...+..|...|..+.|.
T Consensus        99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH  159 (312)
T KOG0645|consen   99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH  159 (312)
T ss_pred             eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence            3456899999999999999999999999999999997544   345678999999888773

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=98.85  E-value=1.1e-08  Score=64.16  Aligned_cols=58  Identities=16%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +-....|..||.+++|+|+|+++++|+.|+.|.+|++++++..+.+.+ ...|..+.||
T Consensus       445 i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn  502 (524)
T KOG0273|consen  445 IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWN  502 (524)
T ss_pred             eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEc
Confidence            334557999999999999999999999999999999999877666653 4457778775

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=5e-09  Score=69.86  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.....|.+||..++|.|.+..+++|+.|.+|++|+..+.+|+.++.+|...|+.+.|.
T Consensus        44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FH  102 (1202)
T KOG0292|consen   44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFH  102 (1202)
T ss_pred             HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeecc
Confidence            44556799999999999999999999999999999999999999999999999998773

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.4e-08  Score=65.39  Aligned_cols=54  Identities=20%  Similarity=0.270  Sum_probs=48.6

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+|++.|.++...|.|..|++|+.||+|++|.+.+|.|+..+. -...|.|++|+
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~  450 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWN  450 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEec
Confidence            4799999999999999999999999999999999999988764 45679999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=1.3e-08  Score=65.82  Aligned_cols=56  Identities=20%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             cCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ...+|+.-|+.++|+| |.+.+++++.|++|++|.+....+..++.+|.+.|+|+.|
T Consensus       135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy  191 (794)
T KOG0276|consen  135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY  191 (794)
T ss_pred             EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence            3458999999999999 5678999999999999999887788899999999999865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=98.83  E-value=1.3e-08  Score=63.96  Aligned_cols=58  Identities=19%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|.++|..+.|+|.+..|++++.|+++++|....+.+..-+.+|...|..+.||
T Consensus       353 ~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws  410 (524)
T KOG0273|consen  353 KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS  410 (524)
T ss_pred             eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeec
Confidence            3445699999999999999999999999999999987777777889999999999886

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.82  E-value=9.2e-09  Score=63.19  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             hhhhhhccCCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEeC
Q 035276            6 AAAVATNQNPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         6 ~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+...++.+|...|..+.|+|... .|++++.|+++++||+.+.+ .++.+.+|..+|.++.|+
T Consensus       333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN  398 (423)
T ss_pred             CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence            34455567789999999999999766 56899999999999998855 678899999999999885

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.82  E-value=2.7e-09  Score=66.83  Aligned_cols=57  Identities=14%  Similarity=0.179  Sum_probs=47.5

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ++...+|..+|.+++|+++|+.+++++-|+.+++||+++|.++..+. ....+.|++|
T Consensus       251 lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf  307 (503)
T KOG0282|consen  251 LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKF  307 (503)
T ss_pred             ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeec
Confidence            45667899999999999999999999999999999999998877663 3344566665

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.81  E-value=1.5e-08  Score=63.18  Aligned_cols=51  Identities=27%  Similarity=0.409  Sum_probs=47.1

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      -.+.+.+|.|||-.+.+|..|+.+++||+..+.....+++|.++|..++|+
T Consensus       348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs  398 (506)
T KOG0289|consen  348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS  398 (506)
T ss_pred             ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence            347889999999999999999999999999988888899999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.81  E-value=1.5e-09  Score=66.56  Aligned_cols=60  Identities=17%  Similarity=0.305  Sum_probs=46.5

Q ss_pred             hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +...+.+.+|...|-++.+  .++++++|+.|.+|++||++.|.+++.+.||+.-|+|++|.
T Consensus       350 ~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd  409 (499)
T KOG0281|consen  350 CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD  409 (499)
T ss_pred             eeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence            3445566677777777766  47788888888888888888888888888888888888774

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.81  E-value=3.1e-09  Score=66.03  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=49.2

Q ss_pred             CCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+|+..|+.++|+..-+ .|++|+.|++|++||+.++++...+..|..+|++++|.
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh  295 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWH  295 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEec
Confidence            36888999999999755 67999999999999999999988998999999999984

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.81  E-value=1.9e-08  Score=62.35  Aligned_cols=49  Identities=18%  Similarity=0.347  Sum_probs=41.0

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCC-C-cEEEEEeC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD-A-PIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~-~-~i~~v~~s   69 (69)
                      ...+.|||++.++++|+.||.|++|++.++++...+.... . .|.+++|+
T Consensus       390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~  440 (459)
T KOG0288|consen  390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN  440 (459)
T ss_pred             cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence            5668899999999999999999999999988766664433 2 59999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=98.79  E-value=2.1e-08  Score=61.35  Aligned_cols=62  Identities=15%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             hhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            7 AAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         7 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.-..++...|..+|..+.|-+ ..+|++++.+|+|++||.++|.+...+.+|...|.+.+++
T Consensus       316 a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls  377 (399)
T KOG0296|consen  316 AASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS  377 (399)
T ss_pred             ccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence            3445778888999999999998 7899999999999999999999989999999999988753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=98.79  E-value=2.1e-08  Score=61.61  Aligned_cols=60  Identities=15%  Similarity=0.324  Sum_probs=54.2

Q ss_pred             hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ...+...+|...|.+++..|.-..|++|+.|.++++||+.+...+..+.+|..+|.++.+
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC  285 (460)
T ss_pred             hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence            346778899999999999999999999999999999999998888889999999988765

>PTZ00420 coronin; Provisional

Probab=98.78  E-value=5.9e-08  Score=62.67  Aligned_cols=56  Identities=9%  Similarity=0.133  Sum_probs=46.1

Q ss_pred             cCCCCCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|...|.+++|+|++..+ ++++.|++|++||+.++.....+. |...|.+++|+
T Consensus       120 ~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws  176 (568)
T PTZ00420        120 ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN  176 (568)
T ss_pred             EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC
Confidence            346788999999999998765 789999999999999876655554 66778998885

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.1e-08  Score=59.40  Aligned_cols=49  Identities=24%  Similarity=0.462  Sum_probs=43.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEeC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~s   69 (69)
                      ..+++|+||++++++|..||+|.+|+++++.....+.+ +..++.+++|+
T Consensus       235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn  284 (311)
T KOG1446|consen  235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN  284 (311)
T ss_pred             ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence            37889999999999999999999999999888777776 78888888875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.77  E-value=3.3e-08  Score=62.84  Aligned_cols=57  Identities=14%  Similarity=0.124  Sum_probs=48.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~s   69 (69)
                      ....|.++|.+++|+||+.+|+++-..+++.+||++++.....-.. |..+|.+++||
T Consensus       482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs  539 (603)
T KOG0318|consen  482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS  539 (603)
T ss_pred             eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC
Confidence            4456899999999999999999999999999999998665433333 99999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.77  E-value=3.7e-08  Score=57.90  Aligned_cols=57  Identities=18%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      +..+.++.++|..+.|+-||++.++++.|++|++|+...|.++.++.+|...|..++
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~   66 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA   66 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc
Confidence            445678999999999999999999999999999999999999999999999887765

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=2e-08  Score=59.41  Aligned_cols=62  Identities=11%  Similarity=0.081  Sum_probs=52.7

Q ss_pred             hhhhccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            8 AVATNQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         8 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +-.+.-...|..+|.++.|++. ++.++++++|++|++||-.-+..+.++.+|...|...+||
T Consensus        94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s  156 (311)
T KOG0277|consen   94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS  156 (311)
T ss_pred             CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence            3345556679999999999995 5567889999999999998878889999999999998886

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.76  E-value=2.4e-08  Score=60.05  Aligned_cols=55  Identities=13%  Similarity=0.095  Sum_probs=46.5

Q ss_pred             CCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|.-.|.++.|+|+.+ +|++|+.|+.|++||+...+ .+.++.+|.-+|++|+|+
T Consensus       211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn  267 (370)
T KOG1007|consen  211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN  267 (370)
T ss_pred             hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence            35777899999999877 46899999999999997533 457889999999999985

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.75  E-value=2.3e-09  Score=67.16  Aligned_cols=58  Identities=19%  Similarity=0.247  Sum_probs=52.1

Q ss_pred             ccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+|...|..+.|.| .+..|++++.|++|++|++.+ +.+++++.+|..+|+.+.||
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s  267 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN  267 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc
Confidence            35678999999999999 677889999999999999987 78889999999999999886

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.75  E-value=2e-08  Score=65.99  Aligned_cols=57  Identities=23%  Similarity=0.343  Sum_probs=53.4

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+-+|.-||+++..+||++.+++|+.|+.|++|.+.=|.|...+.+|...|.++.|
T Consensus       544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F  600 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQF  600 (888)
T ss_pred             eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEE
Confidence            355689999999999999999999999999999999999999999999999999987

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.75  E-value=1.2e-08  Score=66.77  Aligned_cols=34  Identities=18%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      .|.+.|+++.|++||++|++||.|+.|+||.+..
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie  298 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIE  298 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEec
Confidence            7999999999999999999999999999999855

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=98.74  E-value=1.4e-08  Score=62.96  Aligned_cols=53  Identities=9%  Similarity=0.155  Sum_probs=47.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      |...|.+++|+|+...+++++.|++|+|||....+....+.+|...|.++.|.
T Consensus       179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH  231 (464)
T KOG0284|consen  179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH  231 (464)
T ss_pred             hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence            34789999999999999999999999999998777777889999999999884

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=98.73  E-value=7.6e-08  Score=58.99  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=54.2

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.....|+.+|.+++.+|+.+.+++|+.|..-.+|++.++..+..+.+|...|.++.||
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs  115 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS  115 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc
Confidence            34556899999999999999999999999999999999998888999999999999996

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=2.7e-08  Score=60.35  Aligned_cols=49  Identities=14%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      -.++.|++-|.+|+.|+.||.|.+||..|...-+.+.+|..+|.++.||
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS   74 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS   74 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec
Confidence            5789999999999999999999999999966667889999999999997

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=4.3e-08  Score=62.15  Aligned_cols=56  Identities=27%  Similarity=0.281  Sum_probs=51.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+|..+|..+.|++|+.++++|+.|..+.|||......+..+..|...|..++|+
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc  352 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC  352 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence            56799999999999999999999999999999997766778889999999999985

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.70  E-value=4.5e-08  Score=61.47  Aligned_cols=61  Identities=20%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             hhhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            9 VATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.++++..|+.|+..+.|+|++ +.+++|+.|+.+++||+.+......+.+|...|+|..|+
T Consensus       101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~  162 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS  162 (487)
T ss_pred             HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence            4577888999999999999965 567888899999999999866555789999999998874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.70  E-value=4.3e-08  Score=58.10  Aligned_cols=39  Identities=26%  Similarity=0.387  Sum_probs=35.7

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      +.+|-+||.++.|+|||..-++|+.||+|++|.+..++.
T Consensus       263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            689999999999999999999999999999999977543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.70  E-value=5e-08  Score=60.48  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             hhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc-------cEEeccCCCcEEEEEeC
Q 035276           10 ATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ-------PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~-------~~~~~~h~~~i~~v~~s   69 (69)
                      ......+|.++|++++|+| +...|++|+.|.+|.+|++..+..       ...+.+|...|..++|.
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wH  140 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWH  140 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeec
Confidence            3455678999999999999 567789999999999999965322       35678999999999884

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.68  E-value=2.4e-07  Score=52.36  Aligned_cols=57  Identities=19%  Similarity=0.267  Sum_probs=49.2

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|..++..+.|+|+++.+++++.|+.+++||+..++.+..+..|...|.++.|+
T Consensus        46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~  102 (289)
T cd00200          46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS  102 (289)
T ss_pred             EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEc
Confidence            345677888899999999999999999999999999877777788888889988874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=3.7e-08  Score=61.38  Aligned_cols=57  Identities=12%  Similarity=0.120  Sum_probs=47.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v~~   68 (69)
                      ....+|..+|.-+.||||.++|++|+.|..+.+||+.+|.+...+. +|...+.+++|
T Consensus       263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W  320 (519)
T KOG0293|consen  263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW  320 (519)
T ss_pred             eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence            3456899999999999999999999999999999999988765553 35567777777

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=1e-07  Score=61.88  Aligned_cols=54  Identities=17%  Similarity=0.259  Sum_probs=49.7

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      +.+|..-|..+-.++||+.+++++.|++|++||+....|+.++..|...|+++.
T Consensus       209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~  262 (735)
T KOG0308|consen  209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ  262 (735)
T ss_pred             eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence            448999999999999999999999999999999998889999999999998765

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=7e-08  Score=59.18  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=53.1

Q ss_pred             hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      -.+.+.+|+..|.+++|-|.|.+|++++.|.+|++||+.+|-+++.+.+|..+|+.++
T Consensus       185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~  242 (406)
T KOG0295|consen  185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR  242 (406)
T ss_pred             HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence            3566778999999999999999999999999999999999999999999999988775

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.63  E-value=6.2e-08  Score=64.92  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=51.0

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .-+|...|.+++|+|++.+|++++.|.+|.+||..+-+++..+.+|...|..+.|
T Consensus       125 l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~  179 (942)
T KOG0973|consen  125 LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSW  179 (942)
T ss_pred             EecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEE
Confidence            3469999999999999999999999999999999998888899999999988877

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.63  E-value=2.5e-07  Score=61.30  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=45.5

Q ss_pred             ccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ....+|...|.+++|+| ++..|++|+.|++|++||+.++.++..+..+ ..|.++.|
T Consensus       569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~  625 (793)
T PLN00181        569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQF  625 (793)
T ss_pred             EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEE
Confidence            34557999999999997 7889999999999999999987776666544 45677766

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.62  E-value=2.4e-07  Score=54.51  Aligned_cols=61  Identities=21%  Similarity=0.388  Sum_probs=49.8

Q ss_pred             hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-----cEEeccCCCcEEEEEe
Q 035276            8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-----PVIVAMHDAPIKTIRL   68 (69)
Q Consensus         8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-----~~~~~~h~~~i~~v~~   68 (69)
                      .|--+.+.-|.+.|.+.+|+|+|+.+++|+.|++|++.-.+...+     -.++..|...|+.++|
T Consensus        79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~f  144 (350)
T KOG0641|consen   79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAF  144 (350)
T ss_pred             eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEE
Confidence            455566777899999999999999999999999999987764333     3457789999998877

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.62  E-value=2.5e-07  Score=59.49  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      ...+|.+.|.+++|...+..+++|+.|+++++||..+|.|...+.+|..-|+++.
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~  298 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLT  298 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEE
Confidence            3678999999999998888999999999999999999999999999999998875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.62  E-value=1.6e-07  Score=60.34  Aligned_cols=55  Identities=22%  Similarity=0.273  Sum_probs=49.0

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +.+.+|..+|.++..+  +..+++|+.|++|++||+.+++++..+.+|..+|.++.+
T Consensus       325 ~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~  379 (537)
T KOG0274|consen  325 NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV  379 (537)
T ss_pred             EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe
Confidence            3344599999999997  788999999999999999999999999999999998765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=7.4e-08  Score=58.64  Aligned_cols=39  Identities=15%  Similarity=0.253  Sum_probs=35.3

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ...+.+|...|.+++|+.||++|++++.|+.|++||+.+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D  117 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRD  117 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecch
Confidence            344568999999999999999999999999999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.7e-07  Score=62.87  Aligned_cols=57  Identities=11%  Similarity=0.067  Sum_probs=53.3

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|..-|..+.|.+.-.++++++.|++|+||+.++++++..+.||.-.|.|.+|.
T Consensus        88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            456899999999999999999999999999999999999999999999999998873

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.58  E-value=2.7e-07  Score=57.02  Aligned_cols=55  Identities=24%  Similarity=0.335  Sum_probs=47.8

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC---CCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS---GGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t---~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|.+-|.-+.|+.+-.+|++|+.||+++|||++.   +..+..+.-|..+|+++.|+
T Consensus       299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~  356 (440)
T KOG0302|consen  299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH  356 (440)
T ss_pred             eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence            46888899999999888999999999999999964   44567888899999999995

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=2.7e-07  Score=58.67  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=47.8

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~s   69 (69)
                      ...|.++.|+++|++|+.|..+|.|++||....+.+..+.+ |...|.+++|+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~  269 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN  269 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc
Confidence            67799999999999999999999999999988778888877 99999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=6.6e-08  Score=62.73  Aligned_cols=55  Identities=15%  Similarity=0.173  Sum_probs=49.5

Q ss_pred             CCCCCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKDD--GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +.+|...|.+++|-+.  ..+|++|+.|.++++||.++..|++++.+|..-|+.+.|
T Consensus       179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~f  235 (794)
T KOG0276|consen  179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFF  235 (794)
T ss_pred             eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEe
Confidence            4489999999999984  469999999999999999998999999999999988766

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.55  E-value=1.2e-07  Score=60.85  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=51.8

Q ss_pred             hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +..-+...|.+-|+++.|++.+..+++|++|.+.++||-.. ..+..-..|..+|.+++|+
T Consensus       177 ~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~n  236 (737)
T KOG1524|consen  177 SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFN  236 (737)
T ss_pred             cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeec
Confidence            33445667999999999999999999999999999999765 6667777899999999985

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=98.55  E-value=1.5e-07  Score=60.08  Aligned_cols=53  Identities=21%  Similarity=0.265  Sum_probs=41.6

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCC--cEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDA--PIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~--~i~~v~~s   69 (69)
                      ..-++.+|+|++||+.+++|+.||.|++||......   ...-..|..  .|.|+.||
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence            344678999999999999999999999999754221   222357877  89999997

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=3.9e-07  Score=54.86  Aligned_cols=58  Identities=24%  Similarity=0.384  Sum_probs=48.4

Q ss_pred             hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+++...|..|+++|+|.++ ..+++|+.|+.|+++|++++ ....+..|..+|+|+.++
T Consensus        46 ~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~-~~~~igth~~~i~ci~~~  103 (323)
T KOG1036|consen   46 SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG-NEDQIGTHDEGIRCIEYS  103 (323)
T ss_pred             hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC-cceeeccCCCceEEEEee
Confidence            45667789999999999974 45889999999999999995 445677899999998763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.54  E-value=5.1e-07  Score=59.88  Aligned_cols=52  Identities=12%  Similarity=0.088  Sum_probs=45.6

Q ss_pred             CCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+.+++|++ ++.+|++++.|++|++||+.++..+..+.+|...|.+++|+
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~  584 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS  584 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEc
Confidence            45678899988 47889999999999999999877778888999999999884

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.53  E-value=5e-07  Score=54.68  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=38.4

Q ss_pred             ccCCCCCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCC-CccEEeccC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSG-GQPVIVAMH   59 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~-~~~~~~~~h   59 (69)
                      ..+.+|...|+.+.|+|..+++ ++|+.|+.|++||+... .|...+..|
T Consensus       182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h  231 (397)
T KOG4283|consen  182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH  231 (397)
T ss_pred             eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence            4567899999999999998875 88999999999999753 455544433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.51  E-value=5.3e-07  Score=56.40  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~s   69 (69)
                      +..|..+|+-+.||++|++|++++.|.+.-+|++.....   ..++.+|..+|.-+.||
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS  278 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS  278 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC
Confidence            446899999999999999999999999999999976444   35677999999999886

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.49  E-value=3.6e-07  Score=58.90  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~   68 (69)
                      +.+|++-|.++.|+.||.+|++|+.|..+.|||....+.+..+ .+|..-|-+++|
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKF  101 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKF  101 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEee
Confidence            4589999999999999999999999999999999875555444 689999999987

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=6e-08  Score=63.52  Aligned_cols=56  Identities=13%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.+|+.+|.++.|+++-..|+.|..+|+|++||++.++.+..+.+|...+.++.|+
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~  121 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH  121 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec
Confidence            56899999999999999999999999999999999988888999999999888874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.49  E-value=5.1e-07  Score=60.74  Aligned_cols=57  Identities=23%  Similarity=0.330  Sum_probs=47.6

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-------CC-----------ccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS-------GG-----------QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t-------~~-----------~~~~~~~h~~~i~~v~~s   69 (69)
                      +...|.+.|.++.|+|||++|++|+.|+.|.+|+...       |.           +...+.+|...|..+.|+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            4457999999999999999999999999999999872       11           244577899999998885

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.48  E-value=1.5e-07  Score=58.36  Aligned_cols=58  Identities=16%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+..-+|...+.+++|+||+.++++++.|..+++||+..|.....+.+|...++.++|
T Consensus       116 ~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw  173 (434)
T KOG1009|consen  116 KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW  173 (434)
T ss_pred             EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence            3344568899999999999999999999999999999999888888999999998887

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.48  E-value=6.5e-07  Score=54.29  Aligned_cols=55  Identities=16%  Similarity=0.241  Sum_probs=48.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.|.+++.+++.+  +.++++|+.|-+|++||+....++..+-.|.+.|+++.|.
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~   92 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFY   92 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEec
Confidence            345789999999985  8999999999999999999988888888899999999873

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.46  E-value=2.5e-07  Score=57.54  Aligned_cols=63  Identities=11%  Similarity=0.146  Sum_probs=53.5

Q ss_pred             hhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276            6 AAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus         6 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .-+.....+.+..++|.++.|.++++++++++.|+.+++|++.......++.+|..+|.+++|
T Consensus       207 ~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~  269 (459)
T KOG0288|consen  207 EKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF  269 (459)
T ss_pred             chhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence            333344455667788999999999999999999999999999987777889999999998876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.46  E-value=1.3e-07  Score=57.88  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .|+..|.++.|+.|+..+++++.|.++++..+.+|+++.++.+|...|+.+.|+
T Consensus       304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft  357 (508)
T KOG0275|consen  304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT  357 (508)
T ss_pred             hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence            689999999999999999999999999999999999999999999999888763

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.46  E-value=3.1e-07  Score=55.26  Aligned_cols=52  Identities=19%  Similarity=0.230  Sum_probs=44.3

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      -.||.+++|+|--+.++||+.||.|.+||+...+.+..+.....-|..++|+
T Consensus       232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs  283 (323)
T KOG1036|consen  232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFS  283 (323)
T ss_pred             EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEec
Confidence            3478899999999999999999999999999988887776666667777775

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.45  E-value=1.3e-07  Score=58.22  Aligned_cols=57  Identities=25%  Similarity=0.337  Sum_probs=50.7

Q ss_pred             ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .++.+|...|.+++=.|.. ..+++|+.||.|++||+....+...+..|.+.|+.+.+
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v  117 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICV  117 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEe
Confidence            3457899999999999977 67899999999999999998889999999999988765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.45  E-value=7.6e-07  Score=56.11  Aligned_cols=60  Identities=22%  Similarity=0.336  Sum_probs=47.1

Q ss_pred             hhhhhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCC-CccEEeccCCCcEEEEEe
Q 035276            7 AAVATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSG-GQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus         7 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~-~~~~~~~~h~~~i~~v~~   68 (69)
                      +.| ...+.+|+.-|.+.+|+|.. ..+++|+.|++|++||+.+. ..+.++ .|..+|..+-+
T Consensus       143 a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~  204 (487)
T KOG0310|consen  143 AYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLA  204 (487)
T ss_pred             cEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEE
Confidence            444 55788999999999999964 46799999999999999875 444555 58888877643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=1.6e-06  Score=51.08  Aligned_cols=51  Identities=20%  Similarity=0.242  Sum_probs=47.4

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|..++..|.|+.|++|..|..-.+||+..+..++.+..|...|+|++||
T Consensus       232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs  282 (350)
T KOG0641|consen  232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS  282 (350)
T ss_pred             ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC
Confidence            457889999999999999999999999999988889999999999999996

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=2.7e-07  Score=57.87  Aligned_cols=58  Identities=19%  Similarity=0.368  Sum_probs=46.4

Q ss_pred             hccCCCCCC--CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           11 TNQNPNKSI--EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        11 ~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+...+|.+  +|.+++.+-||+.|++|+.||++.+||+.+..+++.+....++|+-+++
T Consensus       268 ~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  268 INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence            334456777  8999999999999999999999999999997787777645566655443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.43  E-value=1.6e-06  Score=52.64  Aligned_cols=58  Identities=14%  Similarity=0.146  Sum_probs=49.2

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCC-cEEEEECCCCCccEEecc--CCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDK-QVKTWPLLSGGQPVIVAM--HDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~v~iwd~~t~~~~~~~~~--h~~~i~~v~~s   69 (69)
                      ..+..|...|.+++.+.+|+.|++++..| -|||||..+|..+.+++.  ....|.+++||
T Consensus       175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            34567999999999999999999999887 579999999998888842  34668999886

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=98.43  E-value=1.6e-06  Score=51.85  Aligned_cols=56  Identities=14%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+.+|+.|+..+.|+.+|-.|.+|+-|.++.+|-...|+++-++.+|.+.|+|+..
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Di   60 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDI   60 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEe
Confidence            45789999999999999999999999999999998888999999999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2.2e-06  Score=51.68  Aligned_cols=52  Identities=15%  Similarity=0.243  Sum_probs=44.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+.|.++.|+++|.++++++.|.++++||..++++...+..+...+..+.|
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~F   64 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACF   64 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEE
Confidence            4667999999999999999999999999999999888887666666666655

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=98.42  E-value=1.3e-06  Score=54.80  Aligned_cols=58  Identities=14%  Similarity=0.244  Sum_probs=44.0

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEe
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRL   68 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~   68 (69)
                      ....++|+++|..++|+.+|-+|++++.|+.|++||++..+...++.- ...++.++.|
T Consensus       382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~f  440 (506)
T KOG0289|consen  382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSF  440 (506)
T ss_pred             cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEE
Confidence            345678999999999999999999999999999999987555444432 2234555544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=1.7e-06  Score=52.42  Aligned_cols=56  Identities=16%  Similarity=0.124  Sum_probs=46.6

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC----ccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG----QPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~----~~~~~~~h~~~i~~v~~   68 (69)
                      ...+|..-|.++.|.+.|+++++|+.|++++|||...+.    +-...+.|.+.|..+.|
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~W   67 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVW   67 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEe
Confidence            455788889999999999999999999999999975433    23456789999998887

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.42  E-value=7.9e-07  Score=54.24  Aligned_cols=58  Identities=12%  Similarity=0.166  Sum_probs=49.6

Q ss_pred             ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEe---ccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIV---AMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~---~~h~~~i~~v~~s   69 (69)
                      +.+-+|...|..+.|.|+. ++|++++.|..|++|++++..|+..+   .+|...|.++.|+
T Consensus       129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            3455799999999999965 67899999999999999998887765   5799999998875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=4.3e-07  Score=59.66  Aligned_cols=53  Identities=28%  Similarity=0.410  Sum_probs=46.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +|...+..+.|+|+|+++++++.|.++++||+..|+.+..+.+|..++..+.|
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~  204 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF  204 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccccc
Confidence            36777888999999999999999999999999988888888889988887654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.40  E-value=1.4e-06  Score=58.67  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=49.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE-EeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV-IVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~-~~~~h~~~i~~v~~   68 (69)
                      ...+|.+.+.++.|+.||+++++.+.|.++++|++++++... ...+|..+|+.+.|
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~  226 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF  226 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence            367899999999999999999999999999999999977665 55689999987765

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.40  E-value=1.3e-06  Score=54.06  Aligned_cols=57  Identities=18%  Similarity=0.305  Sum_probs=44.3

Q ss_pred             hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      +++..+.+|..+|.++.|++ ...++++++|-+|+.||+++++....+. ....+.++.
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~  307 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCIS  307 (423)
T ss_pred             CceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEee
Confidence            34556779999999999998 7789999999999999999987765553 233344443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.39  E-value=1.7e-06  Score=51.59  Aligned_cols=58  Identities=14%  Similarity=0.099  Sum_probs=50.4

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+-++.+..||..+.|+.||++|+++++|.-|-|=++++|.++..++ +..+-..|+|.
T Consensus       224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWH  281 (313)
T KOG1407|consen  224 ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWH  281 (313)
T ss_pred             heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEec
Confidence            45566789999999999999999999999999999999999887775 77777788874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=9.6e-07  Score=52.20  Aligned_cols=57  Identities=19%  Similarity=0.180  Sum_probs=47.7

Q ss_pred             ccCCCCCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKD--DGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~   68 (69)
                      ..+.+|.+||..++|-.  .|+.|++++.|++|.+|.-+.+.  +......|...|++++|
T Consensus        50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~w  110 (299)
T KOG1332|consen   50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAW  110 (299)
T ss_pred             eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecc
Confidence            35668999999999988  89999999999999999977652  23456778999999887

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.38  E-value=9.8e-07  Score=54.01  Aligned_cols=59  Identities=12%  Similarity=0.180  Sum_probs=53.2

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+.+|...|+.++-......+.+++.|.+.++|.+++|.|+..+.+|.+.|++++|+
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh  199 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH  199 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence            45567899999999888777788899999999999999999999999999999999985

>smart00320 WD40 WD40 repeats

Probab=98.37  E-value=1.6e-06  Score=35.11  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=28.9

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWP   46 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd   46 (69)
                      ..|...|.++.|.++++.+++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35777899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.36  E-value=1e-06  Score=58.33  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=46.8

Q ss_pred             CCCCeEEEEECCCCCEEEEec--CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGG--CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~--~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +..++.+++|+++|+++++|-  ....+++|++.......++..|...+.|++|+
T Consensus        77 sRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFs  131 (1080)
T KOG1408|consen   77 SRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFS  131 (1080)
T ss_pred             cCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeec
Confidence            456889999999999999964  56789999999877888899999999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.35  E-value=6.7e-07  Score=56.49  Aligned_cols=46  Identities=20%  Similarity=0.107  Sum_probs=39.0

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      +..+.+|.++|.++++.++|+++++.+.|..++|||+..-..+.++
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            4455689999999999999999999999999999999875554444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.34  E-value=1.4e-06  Score=57.47  Aligned_cols=57  Identities=23%  Similarity=0.324  Sum_probs=47.3

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +..+.+|...|.+++|+.||+.+++|+.|+.|.+|.-+-... .. ..|...|+|+.|+
T Consensus        46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-Lk-YSH~D~IQCMsFN  102 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LK-YSHNDAIQCMSFN  102 (1081)
T ss_pred             ccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-ee-eccCCeeeEeecC
Confidence            445678999999999999999999999999999998655322 22 3699999999885

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=98.34  E-value=9.3e-07  Score=55.12  Aligned_cols=60  Identities=15%  Similarity=0.020  Sum_probs=48.9

Q ss_pred             hhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCC--CCccEEeccCCCcEEEEEeC
Q 035276           10 ATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLS--GGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t--~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.-..+|+..|.+++|.+.. ..+.+++.|+.+.+||+.+  .+......+|.++|.|++|+
T Consensus       219 p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  219 PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            345566899999999999955 4568899999999999994  33345668899999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=5.9e-07  Score=53.09  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=46.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~   68 (69)
                      -...|..-|.++...--|++|++|+.|++|+|+++.....   +.++.+|.+||+.++|
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~w   64 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAW   64 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEee
Confidence            3456777788877777899999999999999999976443   5678999999999987

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=9.8e-07  Score=59.84  Aligned_cols=66  Identities=11%  Similarity=0.062  Sum_probs=56.8

Q ss_pred             cchhhhhhccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276            4 FGAAAVATNQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         4 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ++-+....+...+|...|+++.|++.+ ++|++++.|+.|.+|+.++++.+..+.....++..+.|+
T Consensus       239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             ccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence            344556666678999999999999965 788999999999999999999889998888889888884

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=2.8e-06  Score=54.49  Aligned_cols=55  Identities=22%  Similarity=0.387  Sum_probs=45.1

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC---------c-cEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG---------Q-PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~---------~-~~~~~~h~~~i~~v~~s   69 (69)
                      -+|.+||++++..+.++++++|+-|++|+.|++....         . ...+.||...|+.+++|
T Consensus       341 raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s  405 (577)
T KOG0642|consen  341 RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS  405 (577)
T ss_pred             ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec
Confidence            3799999999999999999999999999999664211         1 23567999999888775

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=2.5e-06  Score=57.13  Aligned_cols=44  Identities=20%  Similarity=0.290  Sum_probs=38.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ..-+|.++|+++.|+|++++|++...||+|++||++++.+...+
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL  176 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence            34579999999999999999999999999999999987765544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.30  E-value=1.7e-06  Score=51.61  Aligned_cols=50  Identities=14%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .|..+..-||++.++++++|+.||+|..++...+..+.-|...|++++|+
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs  302 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS  302 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC
Confidence            35667889999999999999999999999988888888899999999996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.28  E-value=2.3e-06  Score=56.06  Aligned_cols=57  Identities=16%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc----cEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ----PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~----~~~~~~h~~~i~~v~~s   69 (69)
                      .+..|+-.|..++||||+++|++.+.|+++.+|.......    ....+.|..-|+.+.|+
T Consensus       567 ~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~  627 (764)
T KOG1063|consen  567 ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS  627 (764)
T ss_pred             eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccC
Confidence            3678999999999999999999999999999999854322    23367899999998885

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.28  E-value=6.6e-07  Score=54.74  Aligned_cols=56  Identities=16%  Similarity=0.252  Sum_probs=49.0

Q ss_pred             hhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEE
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIK   64 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~   64 (69)
                      |.+..+.+|.++|..+.|-..|+.++++++|.+..+||+++|+.+..+.+|.....
T Consensus       263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT  318 (481)
T ss_pred             eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence            44556678999999999999999999999999999999999988888888876654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.27  E-value=4.9e-06  Score=51.28  Aligned_cols=57  Identities=7%  Similarity=0.074  Sum_probs=45.9

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCC-cEEEEECCCCCccEEeccCC--CcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDK-QVKTWPLLSGGQPVIVAMHD--APIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~v~iwd~~t~~~~~~~~~h~--~~i~~v~~s   69 (69)
                      .+..|.+++-+++|+++|..|++++..| .||++.+.+|.++++++.-.  ..|.+++|+
T Consensus       168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence            3447999999999999999999999887 57999999998888885433  335566664

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.27  E-value=1.6e-06  Score=57.30  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=47.5

Q ss_pred             CCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|+..+.+++|++. ..+|++|+.|++|++||+...+....+.+....|+.|+|+
T Consensus       130 ~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs  185 (839)
T KOG0269|consen  130 NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS  185 (839)
T ss_pred             hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence            368999999999994 5678999999999999998866677777888889999885

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.27  E-value=3.7e-06  Score=51.14  Aligned_cols=58  Identities=10%  Similarity=0.084  Sum_probs=49.9

Q ss_pred             hccCCCCCCCeEEEEECCCCC--EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           11 TNQNPNKSIEVLCSTLKDDGI--TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +..+..|.+.|.++.|++...  +|++|+.||.|.+|++.+-.++..+++|...|+.++.
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsi  135 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSI  135 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEe
Confidence            334456899999999999876  8999999999999999988888899999999987754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.25  E-value=1.4e-06  Score=54.29  Aligned_cols=57  Identities=14%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+|...|-.++|.|.. +.|++++.|.+|.+||+.+|+.+..+. |..-|.++.||
T Consensus       125 v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn  182 (472)
T KOG0303|consen  125 VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN  182 (472)
T ss_pred             EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec
Confidence            3455899999999999975 567999999999999999998888887 99999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.25  E-value=7e-06  Score=47.69  Aligned_cols=51  Identities=8%  Similarity=-0.019  Sum_probs=40.1

Q ss_pred             CCCeEEEEECCCCCEEEEe-cCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSG-GCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~-~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+.+++|+|++++|+++ ..++.|.+||+.+++++..+.. ....+.++++
T Consensus       248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~  299 (300)
T TIGR03866       248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV-GRLPWGVVVR  299 (300)
T ss_pred             CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc-ccccceeEeC
Confidence            3467889999999999876 5689999999999887777764 3555777664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.23  E-value=1e-05  Score=46.07  Aligned_cols=50  Identities=10%  Similarity=0.134  Sum_probs=36.4

Q ss_pred             CCCeEEEEECCCCCEEEEecC---CCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGC---DKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~---d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+..+.|+|+|++|+.++.   .|.+.+||+.+.+.+... .|. .+..+.||
T Consensus       100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~-~~t~~~Ws  152 (194)
T PF08662_consen  100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHS-DATDVEWS  152 (194)
T ss_pred             CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccC-cEEEEEEc
Confidence            446678999999999998764   467999999975555444 233 35677775

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=1.9e-06  Score=53.48  Aligned_cols=48  Identities=21%  Similarity=0.327  Sum_probs=42.0

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..++|+.+|+.|++++.||++|+|+......+.....|.+.|.++.||
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS  195 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS  195 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC
Confidence            778999999999999999999999987756666677888889998886

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.21  E-value=3.9e-06  Score=49.98  Aligned_cols=51  Identities=20%  Similarity=0.224  Sum_probs=45.6

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~s   69 (69)
                      ..|.+..+.|+...+++|+.|..+..||..+|..+..+ ++|..+|.|++|+
T Consensus       225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS  276 (334)
T KOG0278|consen  225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS  276 (334)
T ss_pred             cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC
Confidence            34677889999999999999999999999999888775 8999999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=98.21  E-value=3.5e-06  Score=51.48  Aligned_cols=57  Identities=14%  Similarity=0.152  Sum_probs=46.0

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC------------C------CccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS------------G------GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t------------~------~~~~~~~~h~~~i~~v~~s   69 (69)
                      -+..|..++...+|++||.++++|+.|..|++.|++.            +      ..++++..|..+|+++.|.
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            3446899999999999999999999999999999971            1      1245677788888888763

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.20  E-value=9.3e-07  Score=57.98  Aligned_cols=57  Identities=11%  Similarity=0.034  Sum_probs=50.0

Q ss_pred             cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      -+..|...|.++.|.|- ...|++++.|-+|++||+.+++....+.+|...|..++||
T Consensus       672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWS  729 (1012)
T KOG1445|consen  672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWS  729 (1012)
T ss_pred             eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEEC
Confidence            44578888999999994 5678999999999999999977777889999999999997

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.20  E-value=4.2e-06  Score=55.45  Aligned_cols=57  Identities=14%  Similarity=0.106  Sum_probs=50.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +....|...|+++.|.|+...+.+++-|+.|+.||-+.=++++.+.+|...|+|++-
T Consensus       586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav  642 (888)
T KOG0306|consen  586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV  642 (888)
T ss_pred             hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence            345579999999999999999999999999999998877788999999999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=6e-06  Score=53.94  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=35.0

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV   54 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~   54 (69)
                      ....+++++++|+|++.+|+.|+.||.|++||+.++....
T Consensus       151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~  190 (691)
T KOG2048|consen  151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH  190 (691)
T ss_pred             ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence            3457899999999999999999999999999999876544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=4.8e-06  Score=56.67  Aligned_cols=61  Identities=16%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             hhhccCCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEec--cCCCcEEEEEeC
Q 035276            9 VATNQNPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVA--MHDAPIKTIRLL   69 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~--~h~~~i~~v~~s   69 (69)
                      ..+.+...|.++|+.+.|++.+. .|++|+.||.|.|||++..+......  .-...|.+++|+
T Consensus       107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN  170 (1049)
T KOG0307|consen  107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN  170 (1049)
T ss_pred             HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence            34566778999999999999766 89999999999999998755544442  245678888885

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.15  E-value=1.9e-06  Score=57.78  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=54.2

Q ss_pred             hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276            8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus         8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +.+.+.+-+|-..|.|+.|...|.++++|+.|..++||..+++.++....||...|+.++-
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlav  240 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAV  240 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhcc
Confidence            3456667789999999999999999999999999999999999999999999999887653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.13  E-value=8.6e-06  Score=53.93  Aligned_cols=49  Identities=10%  Similarity=0.093  Sum_probs=44.1

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .|.+++|-|||+.|+.+..+ .+.+||.+.|..+.++++|..-|.|++|+
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys   62 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYA   62 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEc
Confidence            68899999999998776655 58999999999999999999999999986

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.12  E-value=1.2e-05  Score=52.90  Aligned_cols=55  Identities=18%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      ++...+|+.-|..+++-+++. +++|+.||.|+.||+ +|+++....+|...|.++.
T Consensus       172 l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis  226 (745)
T KOG0301|consen  172 LKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS  226 (745)
T ss_pred             hhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence            455667999999999987665 678899999999998 6688888889998888775

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.12  E-value=3.8e-06  Score=51.90  Aligned_cols=55  Identities=16%  Similarity=0.259  Sum_probs=41.3

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~s   69 (69)
                      .+|...|++++|+|-|+-+++|+.|++|+||.+..+..-..+ ..--..|.|++||
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S  324 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS  324 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEe
Confidence            368889999999999999999999999999999875432222 1122446666664

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.11  E-value=1.2e-05  Score=53.58  Aligned_cols=57  Identities=16%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +...|.+.+..+...|.|.+|++.+.|+++.++|..+|+|+....+|...|..++|.
T Consensus       636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence            344677888899999999999999999999999999999998889999999999884

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=8e-06  Score=48.55  Aligned_cols=47  Identities=13%  Similarity=0.188  Sum_probs=37.3

Q ss_pred             hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .++...+|+.-|.++.--.-...+++|++||++|+||+.++++...+
T Consensus       148 i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  148 IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI  194 (325)
T ss_pred             EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence            34556689999999877445556889999999999999998876554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=8.8e-06  Score=54.15  Aligned_cols=58  Identities=22%  Similarity=0.287  Sum_probs=48.4

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      -+.+..|..+|.+++|+++|.+|++|+..+.+.+|.+.+++ .+.++.-..+|..+.+|
T Consensus       244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS  301 (792)
T KOG1963|consen  244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS  301 (792)
T ss_pred             ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence            44566799999999999999999999999999999999966 45566667777776654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.08  E-value=4.1e-05  Score=44.87  Aligned_cols=58  Identities=24%  Similarity=0.369  Sum_probs=49.4

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecC-CCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGC-DKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .....|...|..++|+|++..++.++. |+.+++|++..+.....+.+|...|.+++|+
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  207 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS  207 (466)
T ss_pred             EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence            345578888999999999998888875 9999999999867777788899999998874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.08  E-value=2.1e-06  Score=55.02  Aligned_cols=43  Identities=28%  Similarity=0.549  Sum_probs=39.4

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP   53 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~   53 (69)
                      .++.++|...+.++..++||..|.+|+.|.+||.||+..+.++
T Consensus       544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql  586 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL  586 (705)
T ss_pred             eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence            4678899999999999999999999999999999999987654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=6.7e-06  Score=50.36  Aligned_cols=36  Identities=11%  Similarity=0.176  Sum_probs=33.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL   48 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~   48 (69)
                      ++.+|...|+.++|+++++.+++.+-||+.++||+.
T Consensus       273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            567899999999999999999999999999999985

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.05  E-value=2.3e-05  Score=50.38  Aligned_cols=50  Identities=16%  Similarity=0.309  Sum_probs=43.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ....+.+++.+|||..++++  .+.|++||+++.+.+..+.+|..+|+++.|
T Consensus       143 ~~~~~~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  143 QKPLVSSLCISPDGKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSF  192 (541)
T ss_pred             CCCccceEEEcCCCCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEE
Confidence            34456788999999998877  567999999998888999999999999987

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.04  E-value=2e-05  Score=47.79  Aligned_cols=63  Identities=16%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             hhhhhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEeC
Q 035276            7 AAVATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus         7 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~s   69 (69)
                      +.++.+.+..+..|+.+..|+. |.+++.+++.|.+-.+||++++..   ...+-.|.+.|..++|.
T Consensus       139 ~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~  205 (364)
T KOG0290|consen  139 SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFL  205 (364)
T ss_pred             hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEec
Confidence            3444555667788999999999 678899999999999999998633   34456899999999984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.02  E-value=9.9e-06  Score=52.06  Aligned_cols=49  Identities=16%  Similarity=0.188  Sum_probs=42.8

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...++.+||.+...+++.||.|.|||+.....++.+++|...+.|+..+
T Consensus       512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             hhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence            3457899999999999999999999998867778899999999988653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.01  E-value=3.5e-06  Score=54.40  Aligned_cols=57  Identities=19%  Similarity=0.323  Sum_probs=45.8

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+....|.+.+++-.|+|||.-|+++++||.|++|. .+|-..-.+.....+|+|++|
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            345567899999999999999999999999999998 454333345567788999988

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.01  E-value=1.3e-05  Score=52.81  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=38.7

Q ss_pred             hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276            8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus         8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      +.....+.+|.+.|++++|+|||+.+++-+-|+++++|+-.+++.
T Consensus       710 ~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            344556779999999999999999999999999999999876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.00  E-value=6.9e-06  Score=52.86  Aligned_cols=53  Identities=6%  Similarity=-0.086  Sum_probs=44.0

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.|...+|+|||++|++-+.|+.+||+|..+.+.+...+..-....|+.||
T Consensus       289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence            35578889999999999999999999999998855555556677778888886

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.00  E-value=2.3e-06  Score=57.37  Aligned_cols=60  Identities=13%  Similarity=0.258  Sum_probs=54.3

Q ss_pred             hhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           10 ATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      -+....+|++.+.+++.+.....+++++.|..|++|-+.++..+..+.+|.+.|..++|+
T Consensus       224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafs  283 (1113)
T KOG0644|consen  224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFS  283 (1113)
T ss_pred             hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccC
Confidence            345567899999999999999999999999999999999988888899999999999986

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=1.4e-05  Score=50.44  Aligned_cols=53  Identities=17%  Similarity=0.209  Sum_probs=48.2

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      -.++|.+++-+|+|.+|+.|...+.+.+|.+.+|..+..+.+|=..|+|++|+
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs  132 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS  132 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe
Confidence            36778999999999999988899999999999998888888999999999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=9.1e-06  Score=50.51  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=38.1

Q ss_pred             hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE
Q 035276            8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV   54 (69)
Q Consensus         8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~   54 (69)
                      +.....+..|..+|.++.|+|||+.|++-+.| ..++||+++|.++.
T Consensus       176 ~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  176 MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            33444566789999999999999999999999 79999999985543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=97.97  E-value=1.6e-05  Score=49.65  Aligned_cols=58  Identities=17%  Similarity=0.162  Sum_probs=45.5

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC--------C-----CC---ccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL--------S-----GG---QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~--------t-----~~---~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+..|...|..+.|+|+|..|++|+.++.|.+|...        +     .+   ....+.+|...|..++|+
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws  132 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS  132 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence            3456799999999999999999999999999999876        2     00   123456788888777774

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=97.97  E-value=1.9e-05  Score=48.36  Aligned_cols=58  Identities=12%  Similarity=0.172  Sum_probs=47.4

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCC-CcEEEEEe
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHD-APIKTIRL   68 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~-~~i~~v~~   68 (69)
                      -+....|++.|.++.+++.++.-++++.||.|++||=.+++|+.++. .|. ..|.+..|
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F  313 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF  313 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence            34556799999999999999999999999999999998888987763 564 44666655

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.96  E-value=4.3e-05  Score=50.18  Aligned_cols=53  Identities=13%  Similarity=0.332  Sum_probs=48.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ++..+|.+++-++.|..+++|+..+.+++||-.+.+++..+.+|..-|+++..
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~  221 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV  221 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence            77888999999999999999999999999999999999999999999988754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=97.95  E-value=3.8e-05  Score=46.60  Aligned_cols=59  Identities=19%  Similarity=0.154  Sum_probs=43.1

Q ss_pred             hccCCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEe---ccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIV---AMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~---~~h~~~i~~v~~s   69 (69)
                      .+++-.|..+|.+++|..++. .+++.+.||.+|++|+...+....+   .....+..+++|+
T Consensus       189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            557778999999999999775 5689999999999999875443322   2223445555553

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.94  E-value=3.3e-05  Score=46.00  Aligned_cols=48  Identities=15%  Similarity=0.092  Sum_probs=42.4

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      +|..+-..|..+.++.++.|+.+..||+++|+..+.+++|...|.++.
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            467788898888888888999999999999887789999999998875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=97.93  E-value=1.5e-05  Score=52.09  Aligned_cols=57  Identities=9%  Similarity=0.075  Sum_probs=47.4

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE--eccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI--VAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~--~~~h~~~i~~v~~   68 (69)
                      .....|...|+++.|-|....|++++.|.+++.||+++.++...  +.+|..-+.+++|
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf  152 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECF  152 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhh
Confidence            44557999999999999667889999999999999998766544  6789888877765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=97.93  E-value=3.2e-05  Score=50.95  Aligned_cols=56  Identities=13%  Similarity=0.100  Sum_probs=49.5

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCC-----cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDK-----QVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~-----~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +-+|..+|.+++.+|+++.+++++...     .|++|++.+-...+.+.+|+..|..++||
T Consensus       521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS  581 (764)
T KOG1063|consen  521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS  581 (764)
T ss_pred             hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence            347999999999999999999987654     79999998877778899999999999997

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=97.93  E-value=2.3e-05  Score=48.01  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=35.1

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ....+|...|+++.|+++|.++++++-|.++++|++..
T Consensus       175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            35678999999999999999999999999999999984

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.91  E-value=9.1e-05  Score=42.17  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=36.7

Q ss_pred             CCCCeEEEEECCCCCEEEE--ecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFS--GGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s--~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..++|.+++|+|+|+.++.  |..+..|.+||++ ++.+..+.  ...+..+.||
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws  109 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS  109 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC
Confidence            3457999999999998644  4467799999997 35555553  4556777775

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=97.91  E-value=6e-05  Score=48.51  Aligned_cols=52  Identities=13%  Similarity=0.240  Sum_probs=45.0

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v~~   68 (69)
                      .+.|...++|+++|.+|+.|...|.|..||+..-+. +..+..|...|.+++|
T Consensus       249 y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  249 YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF  301 (673)
T ss_pred             ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence            456788899999999999999999999999986444 4567789999999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=8.7e-05  Score=46.17  Aligned_cols=56  Identities=13%  Similarity=0.242  Sum_probs=40.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEec-CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGG-CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +-++| .+|.+++|++||..+++++ .|..|.+||..++.+.....--...+.-++||
T Consensus       191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS  247 (445)
T KOG2139|consen  191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS  247 (445)
T ss_pred             eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence            34455 6899999999999999987 57799999999976644333334445555654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=97.87  E-value=2.6e-05  Score=51.34  Aligned_cols=52  Identities=17%  Similarity=0.262  Sum_probs=40.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+|..+|+.++.-|++ .+++|+.|++|++|.-  ++++.++.+|...|+.+++
T Consensus       136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v  187 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV  187 (745)
T ss_pred             cCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence            56788888888877777 5778888888888864  4667788888888877653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.83  E-value=2e-05  Score=49.74  Aligned_cols=55  Identities=15%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI   66 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v   66 (69)
                      +...+|.+.|.+++|-.....|++++.|+++++|+++....+.++.+|...|..+
T Consensus       238 ~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  238 KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             hcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            3457899999999999988899999999999999998766677888998888765

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=7.1e-05  Score=45.63  Aligned_cols=57  Identities=11%  Similarity=0.109  Sum_probs=43.9

Q ss_pred             ccCCCCCCCeEEEEECCC-CC---EEEEecCCCcEEEEECCCCC--------------------ccEEeccCCCcEEEEE
Q 035276           12 NQNPNKSIEVLCSTLKDD-GI---TVFSGGCDKQVKTWPLLSGG--------------------QPVIVAMHDAPIKTIR   67 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~-~~---~l~s~~~d~~v~iwd~~t~~--------------------~~~~~~~h~~~i~~v~   67 (69)
                      ..+++|..+|.+++|.|+ |+   .|++++-|| |+||.+....                    .+..+..|..+|+++.
T Consensus       217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~  295 (361)
T KOG2445|consen  217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR  295 (361)
T ss_pred             hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence            345589999999999996 33   478999999 9999997311                    1223678999999999


Q ss_pred             eC
Q 035276           68 LL   69 (69)
Q Consensus        68 ~s   69 (69)
                      |+
T Consensus       296 wN  297 (361)
T KOG2445|consen  296 WN  297 (361)
T ss_pred             Ee
Confidence            85

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.82  E-value=5.6e-05  Score=48.73  Aligned_cols=58  Identities=10%  Similarity=0.235  Sum_probs=41.4

Q ss_pred             ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCc-cEEec-----cCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQ-PVIVA-----MHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~-~~~~~-----~h~~~i~~v~~s   69 (69)
                      ....+|...+.+.+|.|+. +.+++++.|+++++||++..+. ...+.     +-.-++..++|+
T Consensus       262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n  326 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN  326 (641)
T ss_pred             hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecC
Confidence            3445899999999999965 5789999999999999975332 23332     223445666765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.78  E-value=0.00011  Score=49.59  Aligned_cols=57  Identities=19%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+...+.++.+++|+-+|+.++.|+.|-.|++-++.+......+.+|..+|.++.|+
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~  147 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD  147 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence            344557788999999999999999999999999999988889999999999999874

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.63  E-value=0.00062  Score=30.65  Aligned_cols=35  Identities=17%  Similarity=0.092  Sum_probs=30.0

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ...+|..++|+|....|+.+..||.|.+|.+ ++++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3456889999999999999999999999998 4443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.62  E-value=0.00013  Score=46.29  Aligned_cols=54  Identities=11%  Similarity=0.085  Sum_probs=42.1

Q ss_pred             CCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCC--Cc--cEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSG--GQ--PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~--~~--~~~~~~h~~~i~~v~~s   69 (69)
                      -|...|.+++++|.. .++++++.|++.+|||+..-  +.  +.....|...|.++-||
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence            467789999999965 56899999999999999652  22  23345799999988876

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=97.60  E-value=0.00016  Score=44.12  Aligned_cols=43  Identities=14%  Similarity=0.148  Sum_probs=36.1

Q ss_pred             hhccCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc
Q 035276           10 ATNQNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        10 ~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ...+..+|...|.++.|.| |...+.+++-|.++++||+++.+.
T Consensus        93 ~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~  136 (397)
T KOG4283|consen   93 AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE  136 (397)
T ss_pred             cccCCccceeeeeeeEEeeecCceeecccccceEEEeeccccee
Confidence            4556668999999999999 667788899999999999998554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00033  Score=46.01  Aligned_cols=52  Identities=17%  Similarity=0.123  Sum_probs=39.7

Q ss_pred             CCCCeE-EEEECCCCCEEEEecCCCcEEEEECCCCCccEE-eccCCCcEEEEEe
Q 035276           17 KSIEVL-CSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI-VAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~-~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~-~~~h~~~i~~v~~   68 (69)
                      |..++. +++|.|||+.|+.|-.||+|++.|++++..+.. ......+|.++-|
T Consensus        60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w  113 (665)
T KOG4640|consen   60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIW  113 (665)
T ss_pred             CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeec
Confidence            555566 899999999999999999999999999766543 2234455665555

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.00049  Score=47.60  Aligned_cols=53  Identities=21%  Similarity=0.366  Sum_probs=43.5

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI   66 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v   66 (69)
                      +....++|.+++|+.||+.++.|-.+|.|.+||...++.++.+..|..+...+
T Consensus       126 ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  126 NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            33457899999999999999999999999999998877777776666665544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=97.47  E-value=0.00041  Score=42.79  Aligned_cols=55  Identities=20%  Similarity=0.205  Sum_probs=41.3

Q ss_pred             CCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~   68 (69)
                      +..|..-|+.+.|.| +...|++|+.||-|.++|++....   +...-.|...|.++.|
T Consensus       161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw  219 (376)
T KOG1188|consen  161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGW  219 (376)
T ss_pred             hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeee
Confidence            346889999999999 567899999999999999975332   2223346666776666

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.45  E-value=0.00056  Score=42.21  Aligned_cols=45  Identities=22%  Similarity=0.398  Sum_probs=34.1

Q ss_pred             EEECCCCCEEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEe
Q 035276           24 STLKDDGITVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        24 ~~~s~~~~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~   68 (69)
                      ....|++++|++|+.||.|++||+++ +.....+..|+.-++.+++
T Consensus       303 FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  303 FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence            45678899999999999999999988 5544455556666665554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.44  E-value=0.00083  Score=42.17  Aligned_cols=55  Identities=15%  Similarity=0.035  Sum_probs=37.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEec---CCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGG---CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~---~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+..+...+...+|+|||+.|+..+   .+..|.+||+.++.. ..+..+...+...+|
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~  253 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRF  253 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEE
Confidence            3456677899999999999887654   346899999988643 334334444444444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=97.43  E-value=0.00014  Score=43.72  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL   48 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~   48 (69)
                      -|.+.|.+++|+||.+.++.++.|..|.+|++.
T Consensus       291 yHsagvn~vAfspd~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  291 YHSAGVNAVAFSPDCELMAAASKDARISLWKLY  323 (323)
T ss_pred             hhhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence            588899999999999999999999999999974

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.42  E-value=0.00077  Score=42.72  Aligned_cols=56  Identities=11%  Similarity=0.001  Sum_probs=39.5

Q ss_pred             cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+.-|...|.++.|.|. .+.|++|+.|++|++.|.....+.-....-.+.|-.++|
T Consensus       281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w  337 (463)
T KOG0270|consen  281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW  337 (463)
T ss_pred             ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence            34468899999999995 678899999999999999853332222223444555554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=97.40  E-value=0.00058  Score=41.93  Aligned_cols=58  Identities=10%  Similarity=0.175  Sum_probs=47.4

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~s   69 (69)
                      ..+..|...|..++|+|.+..|++|+.|..-.+|....+..   ...+..+.....+|.|+
T Consensus        49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws  109 (361)
T KOG1523|consen   49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS  109 (361)
T ss_pred             eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence            34556889999999999999999999999999999854433   34456788889999885

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.39  E-value=0.0012  Score=38.29  Aligned_cols=39  Identities=15%  Similarity=0.100  Sum_probs=30.3

Q ss_pred             eEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEeccC
Q 035276           21 VLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVAMH   59 (69)
Q Consensus        21 v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~~h   59 (69)
                      +..++|+|+++.+ +++..++.|++||+.+++....+..+
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC
Confidence            5678999999987 56678899999999887665555433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.37  E-value=0.0012  Score=41.12  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=29.5

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc
Q 035276           22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM   58 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~   58 (69)
                      ..+.|+|||++++.++.|+.|.++|+.+++.+..+..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence            4578999999999999999999999999877666643

...

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.36  E-value=0.00039  Score=42.90  Aligned_cols=49  Identities=18%  Similarity=0.206  Sum_probs=38.5

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEec-CCCcEEEEECCC-CCccEEeccCCC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGG-CDKQVKTWPLLS-GGQPVIVAMHDA   61 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t-~~~~~~~~~h~~   61 (69)
                      .+.+|.+.|..++|.+||++|++|. .|-+|-+||+.- +..+..+..|..
T Consensus       245 llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~  295 (406)
T KOG2919|consen  245 LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG  295 (406)
T ss_pred             eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc
Confidence            3458999999999999999999987 477899999965 344556666654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.36  E-value=0.00033  Score=43.66  Aligned_cols=50  Identities=24%  Similarity=0.260  Sum_probs=38.5

Q ss_pred             hhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276            6 AAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus         6 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ++.+....-.+|..-|..++..++ ..|++++.|+++++||+.+|+++..+
T Consensus       182 a~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  182 ATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             cccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence            344444455678888888888864 45899999999999999999876443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.34  E-value=0.0013  Score=41.94  Aligned_cols=54  Identities=13%  Similarity=0.194  Sum_probs=42.5

Q ss_pred             CCCCCeEEEEECCCC--CEEEEecCCCcEEEEECCCCC----ccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDG--ITVFSGGCDKQVKTWPLLSGG----QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~--~~l~s~~~d~~v~iwd~~t~~----~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.++|.+++|.|.-  +.+++|.-.|+|-+||+.+.+    ....+..|..+|.++.|+
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~  243 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFS  243 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEec
Confidence            468899999999954  466778888999999995322    245667899999999885

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.33  E-value=0.00067  Score=42.95  Aligned_cols=57  Identities=12%  Similarity=0.129  Sum_probs=43.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC------CCccEEec-cCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS------GGQPVIVA-MHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t------~~~~~~~~-~h~~~i~~v~~s   69 (69)
                      ..-+|.+-|..+.|+.++++|++|+.|..+++|.+..      .+.+.... .|..-|-|++|+
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~  114 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD  114 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc
Confidence            3446899999999999999999999999999999852      22333332 355778888874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.31  E-value=0.001  Score=41.80  Aligned_cols=38  Identities=18%  Similarity=0.179  Sum_probs=30.0

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGG   51 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~   51 (69)
                      +..+...+...+|+|||+.|+..+.+   ..|.+||+.+++
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~  239 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA  239 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence            44566778999999999999876543   469999998864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.28  E-value=0.00044  Score=43.40  Aligned_cols=48  Identities=15%  Similarity=0.149  Sum_probs=39.2

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECC--CCCccEEeccCCCcEEEEEeC
Q 035276           22 LCSTLKDDGITVFSGGCDKQVKTWPLL--SGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~--t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.|+|||+.|+.++.++...+|++.  +|.....+.+|...+...+||
T Consensus       375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws  424 (429)
T PRK01742        375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS  424 (429)
T ss_pred             CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence            456899999999999989988888863  567778888888878888875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.28  E-value=0.00071  Score=44.18  Aligned_cols=58  Identities=9%  Similarity=-0.064  Sum_probs=45.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC-CCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL-SGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~-t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+...|.++|..+.++|-+..+...+.|.++++|.-. ....+..+..+...+.+++||
T Consensus       392 ~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWS  450 (555)
T KOG1587|consen  392 STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWS  450 (555)
T ss_pred             ccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEc
Confidence            3455789999999999998877666669999999987 444455667788889999997

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=97.27  E-value=7.7e-05  Score=48.04  Aligned_cols=47  Identities=19%  Similarity=0.296  Sum_probs=38.5

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      |++....+.++++|+..+.|+|||++...+.+.+++|...|.++-++
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN  130 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN  130 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec
Confidence            34445556889999999999999999756678889999999998764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=97.24  E-value=0.0046  Score=36.24  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=42.0

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec--cCCCcEEEEEe
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA--MHDAPIKTIRL   68 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~--~h~~~i~~v~~   68 (69)
                      ..|..++.++.|.|++..+++++.|+.+++||..+........  .|...+..+.|
T Consensus       281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (466)
T COG2319         281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF  336 (466)
T ss_pred             ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence            4567889999999999988888889889999998866554444  67766666654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.20  E-value=0.0018  Score=39.48  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=39.9

Q ss_pred             CCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~   68 (69)
                      +..|...|.++.-+| ++.++++|+.|-.|++||+.. ++.+.. ..-.+.|+++++
T Consensus       206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~GGVWRi~~  261 (339)
T KOG0280|consen  206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVGGGVWRIKH  261 (339)
T ss_pred             ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-CccccceEEEEe
Confidence            456888888887777 678999999999999999974 444332 234467777765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.20  E-value=0.002  Score=41.92  Aligned_cols=34  Identities=15%  Similarity=0.217  Sum_probs=30.6

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG   50 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~   50 (69)
                      ....+.+++++|+...++.|+.||.|.+||...+
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~  291 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG  291 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCC
Confidence            4667899999999999999999999999998764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.19  E-value=0.0026  Score=41.69  Aligned_cols=51  Identities=24%  Similarity=0.381  Sum_probs=38.6

Q ss_pred             CCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCc--cE----EeccCCCcEEEEEe
Q 035276           18 SIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQ--PV----IVAMHDAPIKTIRL   68 (69)
Q Consensus        18 ~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~--~~----~~~~h~~~i~~v~~   68 (69)
                      ..+|.++.|+|. ...++.|+.+|.|.+||+..+..  ..    ....|..++..+.|
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            567899999995 55677888999999999986543  21    23468888887776

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.15  E-value=0.0019  Score=39.37  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=41.9

Q ss_pred             cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCC-CCccEE-eccCCCcEEEEE
Q 035276           13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLS-GGQPVI-VAMHDAPIKTIR   67 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t-~~~~~~-~~~h~~~i~~v~   67 (69)
                      .+..|..+.+.+.|+.. .+.+++|+.|+.+..||+.. ++.+.. .+.|...|.++.
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~  217 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY  217 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence            56689999999999984 56889999999999999983 333322 455777776664

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00063  Score=42.87  Aligned_cols=55  Identities=7%  Similarity=-0.139  Sum_probs=45.1

Q ss_pred             cCCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .++.+..-|.+++|+|..+ .+..++.+.+|++.|+++..+...+..| ..++++.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~w  243 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCW  243 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeee
Confidence            4567778899999999776 7888999999999999996666666556 77888877

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.10  E-value=0.0032  Score=39.58  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCCc
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGGQ   52 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~~   52 (69)
                      +..+...+...+|+|||+.|+..+.+   ..|.+||+.+++.
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~  232 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR  232 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE
Confidence            34566678889999999998765532   4599999988654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.08  E-value=0.0054  Score=39.90  Aligned_cols=52  Identities=15%  Similarity=0.262  Sum_probs=40.6

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE-e-ccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI-V-AMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~-~-~~h~~~i~~v~~s   69 (69)
                      ..++..++|+|+|.+|+.|+.|+.|.+|.+........ + .-|..+|..+.||
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS  500 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS  500 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence            66788899999999999999999999999976544332 2 2244778887775

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.06  E-value=0.0044  Score=41.13  Aligned_cols=51  Identities=18%  Similarity=0.280  Sum_probs=43.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ....|-.++|+ ++..|.+.+.+|.|.-||+.++++.+.+......|++++.
T Consensus        68 ~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai  118 (691)
T KOG2048|consen   68 EDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAI  118 (691)
T ss_pred             CCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEe
Confidence            45568899999 5666889999999999999999888888888888988864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.04  E-value=0.0016  Score=40.43  Aligned_cols=56  Identities=18%  Similarity=0.282  Sum_probs=44.4

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEE
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTI   66 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v   66 (69)
                      .....+|.+++.+++|.+..+.|.+|..|..+.+||+.-.+- ..++.+|...|+.+
T Consensus       190 i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  190 ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL  246 (404)
T ss_pred             EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence            345668999999999999999999999999999999965332 34567787766543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.04  E-value=0.0023  Score=40.95  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=34.2

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .+.|.+++|+.|++.|+.++.+|.|.+||+....++..+
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence            567888999999999999999999999999987776554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.01  E-value=0.00075  Score=43.38  Aligned_cols=51  Identities=22%  Similarity=0.213  Sum_probs=41.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE-eccCCCcE
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI-VAMHDAPI   63 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~-~~~h~~~i   63 (69)
                      .+..|.+.|..+-|+..|..|++++.|..|.+||...+..... ..+|..-|
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~Nv  188 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNV  188 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccch
Confidence            3457899999999999999999999999999999988665433 35676544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.00  E-value=0.0035  Score=38.72  Aligned_cols=38  Identities=13%  Similarity=0.179  Sum_probs=28.8

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCCc
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGGQ   52 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~~   52 (69)
                      ..+...+...+|+|||++|+....+   ..|.+||+.+++.
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~  226 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR  226 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            3455568889999999998776543   4799999988643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.98  E-value=0.0057  Score=39.24  Aligned_cols=53  Identities=8%  Similarity=0.142  Sum_probs=39.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC--CccEEeccCCCcEEEEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG--GQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~--~~~~~~~~h~~~i~~v~~   68 (69)
                      ...++|.++.|.|....|++++.|+++++|.+...  ..++.+.=-..+|.++.|
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f  265 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEF  265 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeee
Confidence            34667999999999999999999999999998532  223443334566666555

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=96.88  E-value=0.0067  Score=37.18  Aligned_cols=61  Identities=18%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             hhhccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCC-----------------------------ccEEecc
Q 035276            9 VATNQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGG-----------------------------QPVIVAM   58 (69)
Q Consensus         9 ~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~-----------------------------~~~~~~~   58 (69)
                      .+....++|+..|.++.|+|. .+.|++++.|..|.+|-..+-.                             .+..+..
T Consensus       249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde  328 (370)
T KOG1007|consen  249 FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE  328 (370)
T ss_pred             ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc
Confidence            345677899999999999995 5677999999999998764311                             1234567


Q ss_pred             CCCcEEEEEeC
Q 035276           59 HDAPIKTIRLL   69 (69)
Q Consensus        59 h~~~i~~v~~s   69 (69)
                      |...|.+++||
T Consensus       329 hEDSVY~~aWS  339 (370)
T KOG1007|consen  329 HEDSVYALAWS  339 (370)
T ss_pred             cccceEEEeec
Confidence            88888888886

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.88  E-value=0.0022  Score=40.17  Aligned_cols=55  Identities=11%  Similarity=0.004  Sum_probs=42.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEE
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIR   67 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~   67 (69)
                      .+.+|-.-+++++|+||+++|+++-.|.+|++-....--.+..+ -||...|..++
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence            45578888999999999999999999999999776442333333 47888887764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.84  E-value=0.0048  Score=37.26  Aligned_cols=40  Identities=13%  Similarity=0.058  Sum_probs=33.6

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ....|..+..||||+.|++.+.+|.|.+|++.+-......
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            3556889999999999999999999999999875554444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=96.81  E-value=0.0041  Score=39.12  Aligned_cols=39  Identities=13%  Similarity=0.104  Sum_probs=29.5

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecC---CCcEEEEECCCCCc
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGC---DKQVKTWPLLSGGQ   52 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~---d~~v~iwd~~t~~~   52 (69)
                      +..+...+...+|+|||+.|+..+.   +..|.+||+.+++.
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~  240 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR  240 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE
Confidence            3445667888999999999887653   34699999987654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.80  E-value=0.007  Score=36.81  Aligned_cols=49  Identities=8%  Similarity=0.125  Sum_probs=38.5

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCcc-EE----eccCCCcEEEEEeC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP-VI----VAMHDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~-~~----~~~h~~~i~~v~~s   69 (69)
                      -.+..|+.....++++..|+++.|||+.....+ ..    -+.|.+.++.++|+
T Consensus       206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs  259 (344)
T KOG4532|consen  206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS  259 (344)
T ss_pred             ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence            367789999999999999999999999753322 21    24688899999886

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.79  E-value=0.011  Score=35.76  Aligned_cols=34  Identities=6%  Similarity=0.113  Sum_probs=28.3

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ..++||||+..|+.+...|+|+++|+.. ..+..+
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I   80 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI   80 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence            4689999999999999999999999975 343333

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=96.78  E-value=0.0052  Score=39.97  Aligned_cols=59  Identities=14%  Similarity=0.302  Sum_probs=46.9

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCC--------cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDK--------QVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--------~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .++..+|+..|.+++..||...+++|-..+        .+++||..+..-+..+..-...|.+++||
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFs  163 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFS  163 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeec
Confidence            456778999999999999998888754333        58999988766666776677888999886

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=96.76  E-value=0.0034  Score=40.90  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=37.5

Q ss_pred             hhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276            8 AVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG   50 (69)
Q Consensus         8 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~   50 (69)
                      .|-...+.+|...++.+++++....|++++.|++++.|+....
T Consensus       386 ~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  386 SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             chhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence            3556678899999999999999999999999999999997653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=96.71  E-value=0.0096  Score=36.77  Aligned_cols=53  Identities=11%  Similarity=0.229  Sum_probs=44.6

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC---ccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG---QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~---~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|.+-+|++|++.++.+.....+.||.....+   ...++..|...|..+.|+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa   64 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA   64 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeec
Confidence            45689999999999999999999999999986544   345678899999999884

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.59  E-value=0.021  Score=35.83  Aligned_cols=54  Identities=6%  Similarity=0.057  Sum_probs=40.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEe-c-CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSG-G-CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~-~-~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+...+..+++++.+.+|+-- + ..|.|.+||+.+-.....+..|...+.+++||
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs  182 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS  182 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC
Confidence            344445555566566687643 2 46899999999877778888999999999986

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.57  E-value=0.0029  Score=44.58  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=30.8

Q ss_pred             hccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCC
Q 035276           11 TNQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ..++..|+..+..++-+++ +.++++|+.||+|++||+..
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k 1080 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK 1080 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehh
Confidence            3455567777778777765 48999999999999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=96.54  E-value=0.01  Score=36.86  Aligned_cols=39  Identities=15%  Similarity=0.142  Sum_probs=29.4

Q ss_pred             CCCCCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCCc
Q 035276           14 NPNKSIEVLCSTLKD--DGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ..++...+..+.|..  ....+++|+.||+|++||+.+..+
T Consensus        66 fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   66 FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence            345566666778877  345689999999999999987544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.0077  Score=37.89  Aligned_cols=40  Identities=10%  Similarity=-0.032  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP   53 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~   53 (69)
                      ..+-.+.+.++...|..++|++++.|..+||+|+++.+.+
T Consensus       286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            3456788999999999999999999999999999995443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=96.50  E-value=0.0075  Score=38.06  Aligned_cols=47  Identities=11%  Similarity=0.092  Sum_probs=35.4

Q ss_pred             EEEEECCCCCEEEEecCCCc---EEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           22 LCSTLKDDGITVFSGGCDKQ---VKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~---v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|+|||+.|+.++.++.   +.++++ +|+....+.+|...+...+|+
T Consensus       377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Ws  426 (429)
T PRK03629        377 ETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWS  426 (429)
T ss_pred             CCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccC
Confidence            35689999999988877664   666776 456667777788888888775

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=96.50  E-value=0.017  Score=24.30  Aligned_cols=32  Identities=9%  Similarity=0.094  Sum_probs=20.0

Q ss_pred             CCCCCCCeEEEEECCCCCEEEE-ecCC--CcEEEE
Q 035276           14 NPNKSIEVLCSTLKDDGITVFS-GGCD--KQVKTW   45 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s-~~~d--~~v~iw   45 (69)
                      +......-....|+|||+.|+- +..+  +...||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3344555677899999998754 4455  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK00178 tolB translocation protein TolB; Provisional

Probab=96.49  E-value=0.018  Score=36.02  Aligned_cols=39  Identities=13%  Similarity=0.095  Sum_probs=28.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCCc
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGGQ   52 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~~   52 (69)
                      +..+..++....|+|||+.|+..+.+   ..|.+||+.+++.
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~  235 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR  235 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE
Confidence            34456678889999999988665433   3688899987643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.43  E-value=0.0084  Score=36.92  Aligned_cols=32  Identities=6%  Similarity=0.183  Sum_probs=28.9

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ...|.+++|||++.+|+.++..|+++++.+..
T Consensus       226 ~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  226 RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            34588999999999999999999999999975

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.42  E-value=0.02  Score=24.21  Aligned_cols=40  Identities=8%  Similarity=0.078  Sum_probs=26.3

Q ss_pred             CCCCEEEEec-CCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           28 DDGITVFSGG-CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        28 ~~~~~l~s~~-~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      |++++|+.+. .++.|.++|..+++.+..+.. ......+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence            5788776655 578999999988766665543 233344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK03629 tolB translocation protein TolB; Provisional

Probab=96.40  E-value=0.022  Score=36.01  Aligned_cols=37  Identities=11%  Similarity=0.091  Sum_probs=27.7

Q ss_pred             CCCCCCeEEEEECCCCCEEEEec---CCCcEEEEECCCCC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGG---CDKQVKTWPLLSGG   51 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~---~d~~v~iwd~~t~~   51 (69)
                      ..+...+...+|+|||+.|+..+   .+..+.+||+.+++
T Consensus       195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~  234 (429)
T PRK03629        195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA  234 (429)
T ss_pred             ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC
Confidence            34456788999999999887543   34579999998764

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=96.22  E-value=0.015  Score=40.16  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=40.3

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCC-cEEEEE
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDA-PIKTIR   67 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~-~i~~v~   67 (69)
                      ...+|+.+|..+.|.|+  .+++++.|.+.++|+.+. ..+..+.+|.. .|+.+.
T Consensus       213 ~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~  265 (967)
T KOG0974|consen  213 TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIA  265 (967)
T ss_pred             ccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEE
Confidence            45589999999999998  899999999999998764 55556666653 355543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.22  E-value=0.017  Score=39.41  Aligned_cols=48  Identities=17%  Similarity=0.257  Sum_probs=34.7

Q ss_pred             CC-CCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEe-ccCCCcEE
Q 035276           17 KS-IEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIK   64 (69)
Q Consensus        17 ~~-~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~   64 (69)
                      |. ++|..++|..||+.+ ++++..|.+-+||++..+.+..+ ..|...|.
T Consensus       242 ~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~  292 (910)
T KOG1539|consen  242 QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVT  292 (910)
T ss_pred             ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcc
Confidence            44 789999999999865 66667799999999875443333 35644443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=96.15  E-value=0.029  Score=36.32  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             CCeEEEEECC----CCCEEEEecCCCcEEEEECCCCCccEE
Q 035276           19 IEVLCSTLKD----DGITVFSGGCDKQVKTWPLLSGGQPVI   55 (69)
Q Consensus        19 ~~v~~~~~s~----~~~~l~s~~~d~~v~iwd~~t~~~~~~   55 (69)
                      ......+.+.    +..+|++-+.|+++|+||+.++.++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            3455566666    778999999999999999999887544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=96.13  E-value=0.026  Score=35.55  Aligned_cols=52  Identities=19%  Similarity=0.059  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEECCCCCEEE-EecCCCc--EEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           16 NKSIEVLCSTLKDDGITVF-SGGCDKQ--VKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~-s~~~d~~--v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+.+.+...+|+|||+.|+ +.+.++.  |.+||+.++. ...+..+........|
T Consensus       243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~  297 (435)
T PRK05137        243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSY  297 (435)
T ss_pred             cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeE
Confidence            3445566789999999875 5555554  6667887754 3444444433333444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=96.13  E-value=0.036  Score=34.73  Aligned_cols=36  Identities=14%  Similarity=0.289  Sum_probs=28.5

Q ss_pred             CCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCc
Q 035276           17 KSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~   52 (69)
                      ...++..++|||||+++ .+..-|-.|.+|.+.+.+.
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            45667889999999766 5566788999999988443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=96.12  E-value=0.038  Score=36.65  Aligned_cols=49  Identities=27%  Similarity=0.417  Sum_probs=37.8

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccC--CCcEEEEEe
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMH--DAPIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h--~~~i~~v~~   68 (69)
                      ..|..+.|+.+|-.++.|..+|.+.+||+.+.+. ..+..|  ..+|..+.|
T Consensus       229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-l~~kdh~~e~pi~~l~~  279 (703)
T KOG2321|consen  229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-LLVKDHGYELPIKKLDW  279 (703)
T ss_pred             CcceEEEecCCceeEEeeccCCcEEEEEcccCCc-eeecccCCccceeeecc
Confidence            3489999999999999999999999999998544 444444  455665555

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.11  E-value=0.0088  Score=39.45  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             CCCCCCCeEEEEECCC--CCEEEEecCCCcEEEEECCC
Q 035276           14 NPNKSIEVLCSTLKDD--GITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ..+|..-|.++.|-|.  .+.+++|..|+.|+++|+..
T Consensus        89 ~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   89 STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            3579999999999994  56789999999999999974

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=96.11  E-value=0.021  Score=38.04  Aligned_cols=45  Identities=29%  Similarity=0.509  Sum_probs=38.6

Q ss_pred             EECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEEEeC
Q 035276           25 TLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        25 ~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v~~s   69 (69)
                      ..+||+.+|++|+.|....+|.+.+.+. +..+.+|...|.+++|.
T Consensus       324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~  369 (720)
T KOG0321|consen  324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL  369 (720)
T ss_pred             ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence            5889999999999999999999987544 45678999999999883

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.06  E-value=0.0086  Score=39.69  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=31.1

Q ss_pred             hhhccCCCCCCC----eEEEEECCCCCEEEEecCCCcEEEE
Q 035276            9 VATNQNPNKSIE----VLCSTLKDDGITVFSGGCDKQVKTW   45 (69)
Q Consensus         9 ~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~d~~v~iw   45 (69)
                      |.++.+.+|...    |+++.|.|...+|++++.|++|++|
T Consensus       692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            345556677555    9999999999999999999999998

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.95  E-value=0.024  Score=39.62  Aligned_cols=51  Identities=14%  Similarity=0.267  Sum_probs=43.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI   66 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v   66 (69)
                      .|.....+++|+-+.++|+.|...|.|+++++.+|........|..+|.-+
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~v 1149 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLV 1149 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccc
Confidence            355667899999999999999999999999999987777777787777544

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=95.92  E-value=0.0078  Score=37.63  Aligned_cols=44  Identities=9%  Similarity=0.052  Sum_probs=32.9

Q ss_pred             CCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCc---cEEeccCC
Q 035276           17 KSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHD   60 (69)
Q Consensus        17 ~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~   60 (69)
                      |...|.++.--. ++++|++.+.+|+|++||+..-++   ++.+.+|.
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv  344 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV  344 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence            566666665444 678899999999999999986566   56666663

>PRK01029 tolB translocation protein TolB; Provisional

Probab=95.87  E-value=0.053  Score=34.40  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=25.6

Q ss_pred             CCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCCc
Q 035276           18 SIEVLCSTLKDDGITVFSGGCD---KQVKTWPLLSGGQ   52 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d---~~v~iwd~~t~~~   52 (69)
                      ...+....|+|||+.|+....+   ..|.+||+.+++.
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence            3445678899999988765432   4689999988654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.0053  Score=40.70  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=38.7

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC-------ccEEeccCCCcEEEEEe
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG-------QPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~-------~~~~~~~h~~~i~~v~~   68 (69)
                      .+|...|..++=-.+-+.+++++.|++|++|.+.+..       |-.+++.|.++|..+.|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igf  792 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGF  792 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceee
Confidence            3566666655433345668899999999999997522       34567889999988765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.80  E-value=0.057  Score=23.85  Aligned_cols=31  Identities=13%  Similarity=0.000  Sum_probs=24.3

Q ss_pred             CCeEEEEECCCCC---EEEEecCCCcEEEEECCC
Q 035276           19 IEVLCSTLKDDGI---TVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        19 ~~v~~~~~s~~~~---~l~s~~~d~~v~iwd~~t   49 (69)
                      +.+.++.|+|+..   .|+-+-..+.|.++|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3578999998654   676666678899999985

It contains a characteristic DLL sequence motif.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.77  E-value=0.055  Score=37.10  Aligned_cols=51  Identities=16%  Similarity=0.274  Sum_probs=41.0

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---------------cEEeccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---------------PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---------------~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.++.|+....++++|+.||.+++..+.+...               -+++.+|...|..+.|+
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN   80 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN   80 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec
Confidence            3467899999999999999999999998864221               13567899999998885

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.71  E-value=0.046  Score=34.82  Aligned_cols=37  Identities=5%  Similarity=0.059  Sum_probs=26.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEecC-C--CcEEEEECCCCCc
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGC-D--KQVKTWPLLSGGQ   52 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~-d--~~v~iwd~~t~~~   52 (69)
                      ....++....|+|||+.|+..+. +  ..|.+||+.+++.
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~  254 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR  254 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe
Confidence            34456678899999998876543 3  3588889887643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=95.63  E-value=0.062  Score=36.68  Aligned_cols=54  Identities=11%  Similarity=0.356  Sum_probs=40.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC--CCc--cEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS--GGQ--PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t--~~~--~~~~~~h~~~i~~v~~s   69 (69)
                      .|...+.+.+++|.+++++++..||.|.+|.-..  +..  ...+.=|...|.++.||
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS  260 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS  260 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe
Confidence            3566678899999999999999999999997532  221  23344477888888875

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=95.61  E-value=0.0088  Score=43.99  Aligned_cols=38  Identities=11%  Similarity=0.026  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ..|...+.+++|-|..+.|++|+.+|.|.+||+...+.
T Consensus      2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence            56889999999999999999999999999999976443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.53  E-value=0.077  Score=33.50  Aligned_cols=47  Identities=13%  Similarity=-0.049  Sum_probs=29.0

Q ss_pred             eEEEEECCCCCEEE-EecCCC--cEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           21 VLCSTLKDDGITVF-SGGCDK--QVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        21 v~~~~~s~~~~~l~-s~~~d~--~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .....|+|||+.|+ +.+.++  .|.+||+.++. ...+..+........|
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~  299 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTW  299 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEE
Confidence            34678999999875 444444  58999998754 3444444333333444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=95.52  E-value=0.077  Score=34.93  Aligned_cols=32  Identities=9%  Similarity=0.124  Sum_probs=27.9

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      .-.+..++|.|+|..+++|+..|.+++||+.-
T Consensus       299 ~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  299 EFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            34456789999999999999999999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=95.40  E-value=0.081  Score=31.93  Aligned_cols=29  Identities=7%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             EEEEECCCCCEEEEec-CCCcEEEEECCCC
Q 035276           22 LCSTLKDDGITVFSGG-CDKQVKTWPLLSG   50 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~-~d~~v~iwd~~t~   50 (69)
                      ..+.|+|++++++++. .++.|.+|++...
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            4688999999998885 4789999999653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=95.33  E-value=0.061  Score=33.94  Aligned_cols=49  Identities=10%  Similarity=0.013  Sum_probs=29.0

Q ss_pred             CeEEEEECCCCCEEE-EecCCCcEEEEECCC-CCccEEeccCCCcEEEEEe
Q 035276           20 EVLCSTLKDDGITVF-SGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~-s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~   68 (69)
                      .....+|+|||+.|+ +.+.++..++|.+.. +.....+..+........|
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~w  291 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFF  291 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEE
Confidence            345689999999886 567777777765532 2334444444333333444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=95.30  E-value=0.012  Score=38.15  Aligned_cols=47  Identities=13%  Similarity=0.094  Sum_probs=36.5

Q ss_pred             CeEEEE-ECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEE
Q 035276           20 EVLCST-LKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTI   66 (69)
Q Consensus        20 ~v~~~~-~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v   66 (69)
                      .|..+- |.|..+++++|+.-|.|.+||-.+++.++.+.+...-|+|+
T Consensus       395 TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL  442 (559)
T KOG1334|consen  395 TVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL  442 (559)
T ss_pred             ccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence            466665 78899999999999999999998877666665544456665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.29  E-value=0.013  Score=35.55  Aligned_cols=49  Identities=22%  Similarity=0.242  Sum_probs=36.7

Q ss_pred             eEEEEECCCCC-EEEEecCCCcEEEEECCCCCccE-EeccCCCcEEEEEeC
Q 035276           21 VLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPV-IVAMHDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~-~~~~h~~~i~~v~~s   69 (69)
                      |..++-.|..+ .+++|+.||.+-+||......+. .+..|+.+|+.+.|.
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH  232 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH  232 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc
Confidence            66777778544 56778899999999998754433 357899998888773

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.18  E-value=0.11  Score=32.48  Aligned_cols=39  Identities=15%  Similarity=0.166  Sum_probs=32.4

Q ss_pred             CCCeEEEEECCCCC-EEEEec-CCCcEEEEECCCCCccEEe
Q 035276           18 SIEVLCSTLKDDGI-TVFSGG-CDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        18 ~~~v~~~~~s~~~~-~l~s~~-~d~~v~iwd~~t~~~~~~~   56 (69)
                      ..++..++++||++ +|++.+ .++.|.+.|+.+++.+..+
T Consensus       298 G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       298 GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            44678899999999 887666 6788999999998777766

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.10  E-value=0.14  Score=32.17  Aligned_cols=38  Identities=18%  Similarity=0.043  Sum_probs=24.8

Q ss_pred             eEEEEECCCCCEEE-EecCCC--cEEEEECCCCCccEEeccC
Q 035276           21 VLCSTLKDDGITVF-SGGCDK--QVKTWPLLSGGQPVIVAMH   59 (69)
Q Consensus        21 v~~~~~s~~~~~l~-s~~~d~--~v~iwd~~t~~~~~~~~~h   59 (69)
                      .....|+|||+.|+ +...++  .|.+||+.++. ...+..+
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~  285 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNH  285 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEcccC
Confidence            34578999999886 444444  57788988754 3334333

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=95.09  E-value=0.11  Score=33.35  Aligned_cols=41  Identities=7%  Similarity=0.035  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .|..-|.+++|....++|++|..+++|...|+++.+.+..+
T Consensus       103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~  143 (609)
T KOG4227|consen  103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA  143 (609)
T ss_pred             ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence            45677999999999999999999999999999985554443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=95.09  E-value=0.097  Score=34.87  Aligned_cols=36  Identities=17%  Similarity=0.185  Sum_probs=31.0

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ..+++..|..++....|++|+.++.|..||-.+...
T Consensus       174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr  209 (703)
T KOG2321|consen  174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR  209 (703)
T ss_pred             ccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence            457788999999999999999999999999887443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=94.81  E-value=0.22  Score=31.67  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=26.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPL   47 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~   47 (69)
                      ..+.+.-+.||||+.+|..+..|...++|+.
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence            3445667899999999999999999999954

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.78  E-value=0.14  Score=33.65  Aligned_cols=51  Identities=12%  Similarity=-0.140  Sum_probs=40.1

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEE
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKT   65 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~   65 (69)
                      .+|.++|..+.++.+-..|++++.|+.+..|+......+.........+.+
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s  149 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS  149 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence            468899999999999999999999999999999886555555444443433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.089  Score=33.33  Aligned_cols=49  Identities=16%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE-eccCCCcEEEE
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI-VAMHDAPIKTI   66 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~-~~~h~~~i~~v   66 (69)
                      +.++.++...|+++++++|..-+.+..+|+..+..+.. +.+-.+.|+++
T Consensus       247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi  296 (412)
T KOG3881|consen  247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI  296 (412)
T ss_pred             cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence            66788889999999999999999999999998665443 45555555544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=94.71  E-value=0.2  Score=31.01  Aligned_cols=35  Identities=14%  Similarity=-0.054  Sum_probs=24.0

Q ss_pred             CCCCeEEEEECCCCCEEE-EecCC--CcEEEEECCCCC
Q 035276           17 KSIEVLCSTLKDDGITVF-SGGCD--KQVKTWPLLSGG   51 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~-s~~~d--~~v~iwd~~t~~   51 (69)
                      +...+..++|+|||+.|+ +...+  ..|.+||+.++.
T Consensus       232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            334456689999999775 44444  368888988753

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=94.70  E-value=0.028  Score=34.07  Aligned_cols=37  Identities=11%  Similarity=0.136  Sum_probs=32.3

Q ss_pred             cCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC
Q 035276           13 QNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      .+..|..++..+-|.| ++..|+++++||.+-.||..+
T Consensus       218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4456889999999999 678999999999999999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.29  E-value=0.25  Score=31.54  Aligned_cols=46  Identities=13%  Similarity=-0.000  Sum_probs=27.7

Q ss_pred             EEEEECCCCCEEEE-ecCCCc--EEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           22 LCSTLKDDGITVFS-GGCDKQ--VKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        22 ~~~~~s~~~~~l~s-~~~d~~--v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ...+|+|||+.|+. ...++.  |.++|+.+++ ...+..+........|
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~w  313 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSW  313 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEE
Confidence            45789999998854 455554  7777887753 3444334333333444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=94.24  E-value=0.11  Score=31.44  Aligned_cols=29  Identities=10%  Similarity=0.172  Sum_probs=25.0

Q ss_pred             eEEEEECCCCCEEEEecC-CCcEEEEECCC
Q 035276           21 VLCSTLKDDGITVFSGGC-DKQVKTWPLLS   49 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~-d~~v~iwd~~t   49 (69)
                      +..++|+||++++++... +++|.+||+..
T Consensus       177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             CceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            467899999999988775 89999999974

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.06  E-value=0.11  Score=32.68  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCC-CccEEeccC
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG-GQPVIVAMH   59 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~-~~~~~~~~h   59 (69)
                      ..|.++.|+++|+++++-.. -+|++||+... +.+..++.|
T Consensus       273 sSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  273 SSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             hhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence            34678999999999987432 58999999653 334555555

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=0.42  Score=32.97  Aligned_cols=39  Identities=28%  Similarity=0.259  Sum_probs=28.4

Q ss_pred             CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +|+++++|+.||+|.+-.+.+.+....+ .-..++.++++
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial  120 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIAL  120 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEe
Confidence            5999999999999999999875543332 24455666654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.00  E-value=0.14  Score=31.51  Aligned_cols=37  Identities=8%  Similarity=0.066  Sum_probs=27.8

Q ss_pred             EEECCCCCEEEEe-----cCCCcEEEEECC-CCCccEEeccCC
Q 035276           24 STLKDDGITVFSG-----GCDKQVKTWPLL-SGGQPVIVAMHD   60 (69)
Q Consensus        24 ~~~s~~~~~l~s~-----~~d~~v~iwd~~-t~~~~~~~~~h~   60 (69)
                      ..|++||++|++.     ...|.|-+||.. +..++.++..|.
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G   98 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG   98 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC
Confidence            5799999999884     445799999998 445556665554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.89  E-value=0.39  Score=29.07  Aligned_cols=45  Identities=11%  Similarity=0.072  Sum_probs=36.9

Q ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+..-+|...++.-..++|+..|..+|+.+.++.-...+|++++|
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence            445667777778888899999999999988887767888998887

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=93.85  E-value=0.18  Score=31.52  Aligned_cols=38  Identities=13%  Similarity=0.155  Sum_probs=27.6

Q ss_pred             CeEEEEECCCCCEEEEecCCC--cEEEEECCCCCccEEec
Q 035276           20 EVLCSTLKDDGITVFSGGCDK--QVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~--~v~iwd~~t~~~~~~~~   57 (69)
                      ++..+.|++||+.++.+.++.  .|.+||..|.+.+..+.
T Consensus       317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             cEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            488899999999986665544  69999999977666554

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=93.69  E-value=0.092  Score=32.83  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC-ccEEeccC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG-QPVIVAMH   59 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~-~~~~~~~h   59 (69)
                      ...|.++.|+++|+++++-.. -++++||+...+ ++.++.-|
T Consensus       280 vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         280 VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence            455778999999999886443 479999998644 44555444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.63  E-value=0.67  Score=30.64  Aligned_cols=53  Identities=11%  Similarity=0.036  Sum_probs=37.6

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..-+.|..+..+++|++++.+.....+-+.|+.+|.....=+....-|....|
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~  451 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDW  451 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEE
Confidence            34566889999999999999999999999999987542221223334444444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=93.48  E-value=0.55  Score=28.88  Aligned_cols=49  Identities=12%  Similarity=0.072  Sum_probs=31.6

Q ss_pred             CCeEEEEECCCCCEEEEec-CCCcEEEEECC--CCCccEEec--cCCCcEEEEEe
Q 035276           19 IEVLCSTLKDDGITVFSGG-CDKQVKTWPLL--SGGQPVIVA--MHDAPIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~--t~~~~~~~~--~h~~~i~~v~~   68 (69)
                      .....++++|+|++|++++ .++.|.+|++.  +| .+....  -.-....||.|
T Consensus       292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG-~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG-KLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-EEEEEEEEEESSSEEEEEE
T ss_pred             CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC-cEEEecccccCCCCEEEeC
Confidence            3478899999999998776 56789999774  44 333322  12344566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.32  E-value=0.2  Score=33.98  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      .|...|.+++|++++..+++|...|+|..-.+.+
T Consensus       122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            3788999999999999999999999999988876

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=93.14  E-value=0.26  Score=30.90  Aligned_cols=32  Identities=9%  Similarity=-0.034  Sum_probs=26.2

Q ss_pred             ECCCCCEEEEecC----------CCcEEEEECCCCCccEEec
Q 035276           26 LKDDGITVFSGGC----------DKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        26 ~s~~~~~l~s~~~----------d~~v~iwd~~t~~~~~~~~   57 (69)
                      ++||++.|+.+..          +..|.+||+.+++....+.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~   94 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE   94 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence            9999999977665          7799999999987665553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=93.01  E-value=0.45  Score=31.51  Aligned_cols=39  Identities=8%  Similarity=0.092  Sum_probs=29.7

Q ss_pred             CCCeEEEEECCCCCEEEEec---CCCcEEEEECCCCCccEEe
Q 035276           18 SIEVLCSTLKDDGITVFSGG---CDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~---~d~~v~iwd~~t~~~~~~~   56 (69)
                      .++=.++-|+|.|++|+.+|   ..|.+.+||+...+++..+
T Consensus       311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            44556788999999987655   5689999999886665444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=92.71  E-value=0.8  Score=29.19  Aligned_cols=49  Identities=6%  Similarity=0.037  Sum_probs=30.3

Q ss_pred             CeEEEEECCCCCEEEEe-c--CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           20 EVLCSTLKDDGITVFSG-G--CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~-~--~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+....|+|||+.|+.. .  .+..|.++|+.+++. ..+......+...+|+
T Consensus       372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws  423 (428)
T PRK01029        372 NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWG  423 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceec
Confidence            45668999999988643 3  235788889877543 3333333444555554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=92.56  E-value=0.41  Score=32.01  Aligned_cols=37  Identities=11%  Similarity=0.105  Sum_probs=29.0

Q ss_pred             eEEEEECCCCCEEEEec-----------CCCcEEEEECCCCCccEEec
Q 035276           21 VLCSTLKDDGITVFSGG-----------CDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~-----------~d~~v~iwd~~t~~~~~~~~   57 (69)
                      |.-+.|||.-++|++=+           ....+.|||+.+|...+.+.
T Consensus       252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~  299 (698)
T KOG2314|consen  252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFP  299 (698)
T ss_pred             ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhccee
Confidence            67789999999998843           23689999999987665553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=92.36  E-value=0.27  Score=32.52  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=22.7

Q ss_pred             EEEECCCCCEEEEecC------CCcEEEEECCCCCc
Q 035276           23 CSTLKDDGITVFSGGC------DKQVKTWPLLSGGQ   52 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~~------d~~v~iwd~~t~~~   52 (69)
                      -+.|+|||++++++..      |..++||+. +|..
T Consensus       359 ~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~  393 (566)
T KOG2315|consen  359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSL  393 (566)
T ss_pred             EEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCce
Confidence            4689999999988754      678999996 4444

>smart00564 PQQ beta-propeller repeat

Probab=92.29  E-value=0.37  Score=19.13  Aligned_cols=24  Identities=21%  Similarity=0.165  Sum_probs=19.2

Q ss_pred             CEEEEecCCCcEEEEECCCCCccE
Q 035276           31 ITVFSGGCDKQVKTWPLLSGGQPV   54 (69)
Q Consensus        31 ~~l~s~~~d~~v~iwd~~t~~~~~   54 (69)
                      ..++.+..++.+..+|..+|+...
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W   30 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILW   30 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEE
Confidence            357788899999999998876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.99  E-value=0.32  Score=33.65  Aligned_cols=56  Identities=11%  Similarity=0.127  Sum_probs=38.9

Q ss_pred             CCCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCcc-EEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQP-VIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~-~~~~~h~~~i~~v~~s   69 (69)
                      +.+|+..+.++.|.|... .+++++.|..+..||+.+.... .....-......|+|+
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn  167 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN  167 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence            347899999999999765 6789999999999999875432 3332222333445553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.86  E-value=0.44  Score=33.65  Aligned_cols=36  Identities=11%  Similarity=0.128  Sum_probs=32.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ...|..++..+.|||+|+.++++..-|.+.+|...-
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            346889999999999999999999999999998763

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=91.60  E-value=0.2  Score=32.67  Aligned_cols=51  Identities=16%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+++..+.-+|-...+-.|...|+|.+|.-.+.+.+..+--|..+|+++++
T Consensus       251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv  301 (545)
T KOG1272|consen  251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAV  301 (545)
T ss_pred             CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEE
Confidence            556666788888888899999999999998876666677779999999876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.60  E-value=2.1  Score=27.30  Aligned_cols=39  Identities=3%  Similarity=-0.204  Sum_probs=30.1

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .+++..++.||++++|+.-..++.+.+....-.+.+..+
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            357999999999999998888999888876444444333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.01  E-value=1.4  Score=30.29  Aligned_cols=36  Identities=11%  Similarity=0.077  Sum_probs=29.5

Q ss_pred             CCCCCeEEEEECCC---CCEEEEecCCCcEEEEECCCCC
Q 035276           16 NKSIEVLCSTLKDD---GITVFSGGCDKQVKTWPLLSGG   51 (69)
Q Consensus        16 ~~~~~v~~~~~s~~---~~~l~s~~~d~~v~iwd~~t~~   51 (69)
                      .+...|..+.|.|.   +.+|+.-..|+++|+||+....
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            34567889999996   5789888999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=90.74  E-value=0.57  Score=35.43  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=36.9

Q ss_pred             CCCeEEEEECCCCCEEEEec-CCCcEEEEE--CC---CCCcc--EEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGG-CDKQVKTWP--LL---SGGQP--VIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd--~~---t~~~~--~~~~~h~~~i~~v~~s   69 (69)
                      ..++....|||||.++++.+ .|.-+++|+  ..   .++..  ...-.|..+|+.+.|.
T Consensus       169 ~~~v~~~~~SpDG~f~at~g~~dclaKvwy~~~~~~~~~~~~f~~vyL~HP~~Vs~~~WR  228 (2439)
T KOG1064|consen  169 PSPVYSSTISPDGEFFATIGKRDCLAKVWYKSTVSQSGGEESFSFVYLPHPRRVSGFQWR  228 (2439)
T ss_pred             CcceeEEEEcCCcceEEeccccCcchhhhcccccccccCccceeeEeccCCcccccceec
Confidence            34588899999999998766 678899999  21   11111  2234699999888874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.71  E-value=1  Score=27.89  Aligned_cols=37  Identities=14%  Similarity=0.126  Sum_probs=29.1

Q ss_pred             CCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccE
Q 035276           18 SIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPV   54 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~   54 (69)
                      ..-+-++++++++..+ +|+-..+.+.+||..++..+.
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence            3447789999999877 556678899999999976543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=90.47  E-value=1.1  Score=31.94  Aligned_cols=34  Identities=15%  Similarity=0.143  Sum_probs=28.8

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ..+..++++++|+.+++...+..|++||+.+++.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            3567899999999888888999999999988653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.32  E-value=2.3  Score=24.65  Aligned_cols=48  Identities=6%  Similarity=-0.096  Sum_probs=34.7

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..-.+++..+|+..++....+.|.++|.+ |+.+..+.-....+.+++|
T Consensus       185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  185 YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            35679999999877777788899999976 6766665544456777776

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=90.11  E-value=0.82  Score=31.91  Aligned_cols=56  Identities=4%  Similarity=-0.032  Sum_probs=42.5

Q ss_pred             cCCCCCCCeEEEEECCCC------------CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDG------------ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~------------~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+.-|...|..+.|.|..            -.|+++...|.|.+||...+..+..+..|..+++.+.|
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W  117 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCW  117 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheee
Confidence            344577788889887731            13566777899999999988777778888888887776

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.66  E-value=0.9  Score=18.96  Aligned_cols=25  Identities=16%  Similarity=0.080  Sum_probs=20.2

Q ss_pred             EEEEecCCCcEEEEECCCCCccEEe
Q 035276           32 TVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        32 ~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .++.+..|+.+.-.|..+|+.+-.+
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~   26 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKF   26 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEee
Confidence            4566789999999999998876554

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.62  E-value=0.78  Score=26.80  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=22.8

Q ss_pred             ECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           26 LKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        26 ~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      +..++.+|++-..+|.+.+||+.+++.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~   44 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKA   44 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence            445788999999999999999998654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.54  E-value=1.4  Score=28.76  Aligned_cols=34  Identities=9%  Similarity=0.051  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCCEEEE-ecCCCcEEEEECCCCCcc
Q 035276           20 EVLCSTLKDDGITVFS-GGCDKQVKTWPLLSGGQP   53 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s-~~~d~~v~iwd~~t~~~~   53 (69)
                      -|.++..|.|.++|+. +..+|.++.||+.....+
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            3678999999999955 557999999999875543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=89.42  E-value=0.66  Score=32.23  Aligned_cols=57  Identities=9%  Similarity=0.140  Sum_probs=42.5

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe--ccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV--AMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~--~~h~~~i~~v~~s   69 (69)
                      .+.+|...|.-+.|+...+.|-++..+|-|.+|-+..|.=....  .....-|.++.|+
T Consensus        66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn  124 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN  124 (1189)
T ss_pred             hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc
Confidence            45689999999999999999999999999999999876532221  1233445666663

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.37  E-value=1.8  Score=27.89  Aligned_cols=45  Identities=11%  Similarity=-0.144  Sum_probs=35.2

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDA   61 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~   61 (69)
                      ....+.+++.+|++++.++.-.=|.|-++|+.++..++..+|...
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            345578899999999888777778999999999777666666543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=89.03  E-value=2.7  Score=30.79  Aligned_cols=52  Identities=15%  Similarity=0.042  Sum_probs=37.4

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEE
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTI   66 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v   66 (69)
                      ....+.|.+++.+|.+.+++.|...|.+-+||+.=+..+.... .+..+|..+
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence            3345678999999999999999999999999997644433321 223445443

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=88.90  E-value=1.1  Score=18.80  Aligned_cols=21  Identities=19%  Similarity=0.238  Sum_probs=15.9

Q ss_pred             CCCEEEEecCCCcEEEEECCC
Q 035276           29 DGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        29 ~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      .+..|+.++.|+.+..+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            456788899999999999764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=88.82  E-value=3  Score=25.66  Aligned_cols=29  Identities=10%  Similarity=0.163  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCEEEEec-CCCcEEEEECC
Q 035276           20 EVLCSTLKDDGITVFSGG-CDKQVKTWPLL   48 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~   48 (69)
                      ....++++|||++|+.+. .+..|.+|++.
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            467899999999997765 56789999994

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=88.64  E-value=4.6  Score=25.83  Aligned_cols=33  Identities=9%  Similarity=0.123  Sum_probs=23.5

Q ss_pred             CeEEEEECCCCCE-EEE-ecC--CCcEEEEECCCCCc
Q 035276           20 EVLCSTLKDDGIT-VFS-GGC--DKQVKTWPLLSGGQ   52 (69)
Q Consensus        20 ~v~~~~~s~~~~~-l~s-~~~--d~~v~iwd~~t~~~   52 (69)
                      ......|+|||+. ++. ...  +..|.++|+.+++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~  225 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK  225 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE
Confidence            6678899999985 553 322  35788889988654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=88.60  E-value=0.53  Score=29.75  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=25.8

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      .|..+.+...-..|++++.|+.|++||+..
T Consensus       366 gItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  366 GITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             ceeEEEhhhhccceeecCCceEEEEEechh
Confidence            366777888888899999999999999865

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.51  E-value=0.45  Score=31.10  Aligned_cols=39  Identities=15%  Similarity=0.189  Sum_probs=33.3

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .....++.|+|++..+.+-+.|.+|+++++.+|+..+.+
T Consensus       201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            445678899999999999999999999999998765544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.49  E-value=1.5  Score=28.35  Aligned_cols=33  Identities=9%  Similarity=0.098  Sum_probs=27.5

Q ss_pred             CCCeEEEEECCCCC-EEEEecCCCcEEEEECCCC
Q 035276           18 SIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSG   50 (69)
Q Consensus        18 ~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~   50 (69)
                      ...+++|+|+-|.. +|+.|-..|.|.+||+...
T Consensus       235 ~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  235 YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            36789999999765 6788889999999999653

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=88.27  E-value=1.5  Score=27.89  Aligned_cols=48  Identities=17%  Similarity=0.194  Sum_probs=33.2

Q ss_pred             EEEEECCCCCEEEEe-cCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           22 LCSTLKDDGITVFSG-GCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~-~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .-+-|..|+.+++++ .-|+.|++|++...+-..++..-..++..+.||
T Consensus        52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WS  100 (447)
T KOG4497|consen   52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWS  100 (447)
T ss_pred             hheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeEC
Confidence            345677777766554 457799999998755445666666777777775

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=87.68  E-value=1.6  Score=28.93  Aligned_cols=40  Identities=13%  Similarity=0.084  Sum_probs=29.0

Q ss_pred             CeEEEEECCCCCEEEEecCCC---------------cEEEEECCCCCccEEeccC
Q 035276           20 EVLCSTLKDDGITVFSGGCDK---------------QVKTWPLLSGGQPVIVAMH   59 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~---------------~v~iwd~~t~~~~~~~~~h   59 (69)
                      -|..+.|+|.+.+|.+=....               .+.+||..+|..+..+..-
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~  127 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGI  127 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecccc
Confidence            367789999999998744332               4899999997665555433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.51  E-value=0.23  Score=34.93  Aligned_cols=48  Identities=13%  Similarity=0.056  Sum_probs=39.4

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+++|.|..-.|+.|..-+.+.+|...+.+.......|..+|..+.||
T Consensus        63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS  110 (1416)
T KOG3617|consen   63 TSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWS  110 (1416)
T ss_pred             hhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEec
Confidence            468899987778888899999999998855444556799999999986

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.14  E-value=2.2  Score=30.95  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=28.4

Q ss_pred             CCCCC--eEEEEECCCCC-EEEEecCCCcEEEEECCC
Q 035276           16 NKSIE--VLCSTLKDDGI-TVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        16 ~~~~~--v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t   49 (69)
                      .|+.+  |..+.+.+.|- .|++|+.||.|++||+..
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            45555  89999998653 599999999999999987

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=87.06  E-value=0.85  Score=31.83  Aligned_cols=37  Identities=14%  Similarity=0.155  Sum_probs=32.0

Q ss_pred             EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           32 TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        32 ~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .++.|...|+|.++|+.++.....+..|...|.++.|
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW  475 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEW  475 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeee
Confidence            3577899999999999997766778889999999887

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=87.00  E-value=1.2  Score=17.35  Aligned_cols=25  Identities=12%  Similarity=0.215  Sum_probs=17.3

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEE
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTW   45 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iw   45 (69)
                      +..++.+++|+.+++-.....|+++
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4567777888777776666666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.87  E-value=0.62  Score=31.47  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=30.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ...|..+|.++.|-.+-++++++  |+.|.+||---+..
T Consensus       780 Y~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~  816 (1034)
T KOG4190|consen  780 YQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRL  816 (1034)
T ss_pred             hhhccCcccceeeeeccceeeec--cCcceeecccccch
Confidence            45689999999999998888654  89999999865543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=86.76  E-value=2.5  Score=29.45  Aligned_cols=45  Identities=20%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEE
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTI   66 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v   66 (69)
                      ...+++-+.+| +|+.|+.+|.||+||-. |.. ...+++-..+|..+
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~i  624 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGI  624 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEE
Confidence            34455555544 68889999999999953 332 23456666777665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=86.67  E-value=3.3  Score=21.96  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=22.3

Q ss_pred             EECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCC
Q 035276           25 TLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHD   60 (69)
Q Consensus        25 ~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~   60 (69)
                      .|.-|| ..|+.|+.|..|++|+=.  +.+.++..+.
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~   43 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD   43 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc
Confidence            345454 468999999999999843  3444444333

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=86.51  E-value=2.7  Score=21.16  Aligned_cols=28  Identities=4%  Similarity=0.057  Sum_probs=21.5

Q ss_pred             EEEEECCCCCEEEEe-cCCCcEEEEECCC
Q 035276           22 LCSTLKDDGITVFSG-GCDKQVKTWPLLS   49 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~-~~d~~v~iwd~~t   49 (69)
                      ..+.++|++++|+.+ ..+..|++|+...
T Consensus        57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   57 NGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            567899999988554 4678899988653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PRK04043 tolB translocation protein TolB; Provisional

Probab=85.63  E-value=7.1  Score=25.02  Aligned_cols=34  Identities=9%  Similarity=0.096  Sum_probs=21.9

Q ss_pred             CCCeEEEEECCCCCEEE-EecCC--CcEEEEECCCCC
Q 035276           18 SIEVLCSTLKDDGITVF-SGGCD--KQVKTWPLLSGG   51 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~-s~~~d--~~v~iwd~~t~~   51 (69)
                      .+......|+|||+.|+ +...+  ..|.++|+.++.
T Consensus       232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            33345678999998775 33333  467777877654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=85.49  E-value=5  Score=28.81  Aligned_cols=31  Identities=13%  Similarity=0.116  Sum_probs=26.5

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGG   51 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~   51 (69)
                      ...++++++|...++-..++.|++||..++.
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~  836 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKR  836 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence            4578999999988888899999999998754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=85.08  E-value=6.8  Score=27.86  Aligned_cols=52  Identities=10%  Similarity=-0.045  Sum_probs=40.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEE----ECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTW----PLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iw----d~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|.++.|-++...++.+..+|.|-+.    |..+ ..+.....-...|.+++||
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~VG~vd~GI~a~~WS  129 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEIEIVGSVDSGILAASWS  129 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-ceeEEEEEEcCcEEEEEEC
Confidence            34578999999999999889999999988    5444 3344455667889999997

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=84.79  E-value=0.69  Score=32.82  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=22.4

Q ss_pred             EECCCCCEEEEecCCCcEEEEECCC
Q 035276           25 TLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        25 ~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ..+|||+.++.++.||.++.|.+.-
T Consensus       242 ~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  242 SLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             eeCCCCcEEEEeecCCccceeeeee
Confidence            3899999999999999999999863

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.76  E-value=3.1  Score=29.04  Aligned_cols=38  Identities=11%  Similarity=0.031  Sum_probs=29.4

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .-.++|.++.|.  |.+++=++.+| |++||+.++..+..+
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI  195 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence            347789999995  78887777777 899999987665444

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.05  E-value=5.5  Score=26.60  Aligned_cols=33  Identities=12%  Similarity=0.046  Sum_probs=29.7

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ..++|.++.|++|.+.|+.-..|+.|.+++...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~   97 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP   97 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCC
Confidence            466899999999999999999999999999844

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=83.90  E-value=3.5  Score=26.61  Aligned_cols=40  Identities=18%  Similarity=0.254  Sum_probs=29.9

Q ss_pred             CCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           28 DDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        28 ~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +|...++.|-.+|.|++|.- +|..+....-|..+|..++.
T Consensus        77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~  116 (415)
T PF14655_consen   77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKC  116 (415)
T ss_pred             CCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEe
Confidence            45677899999999999974 66665554558888877754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=83.65  E-value=3.3  Score=25.51  Aligned_cols=32  Identities=9%  Similarity=-0.000  Sum_probs=25.0

Q ss_pred             CCCEEEEecCCCcEEEEECCCCCccEEeccCC
Q 035276           29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD   60 (69)
Q Consensus        29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~   60 (69)
                      .+..|+.++.++.+.++|..+|+.+..+..+.
T Consensus       319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       319 VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence            46688889999999999999987766554333

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=83.33  E-value=2.5  Score=29.05  Aligned_cols=52  Identities=10%  Similarity=0.047  Sum_probs=37.7

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc-EEe-----ccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP-VIV-----AMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~-~~~-----~~h~~~i~~v~~s   69 (69)
                      .+.+..+..+++...++.|+..+.|.++.++.+... ..+     ..|...|+++.|+
T Consensus        76 ~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws  133 (726)
T KOG3621|consen   76 TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS  133 (726)
T ss_pred             cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEec
Confidence            344556778888888888999999999998763321 111     3477889999996

>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences

Probab=83.32  E-value=5.6  Score=21.75  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=20.6

Q ss_pred             CCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCC
Q 035276           18 SIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGG   51 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~   51 (69)
                      +..++-.-|.+|.+.| ++|-.|+.|+.|++..++
T Consensus        10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~   44 (136)
T PF08954_consen   10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDES   44 (136)
T ss_dssp             -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SST
T ss_pred             CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCC
Confidence            3446666799999887 456689999999998753

It has no known function []. ; PDB: 2B4E_A 2AQ5_A.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=82.80  E-value=3.9  Score=29.00  Aligned_cols=29  Identities=7%  Similarity=-0.026  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWP   46 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd   46 (69)
                      ...|.+++||||.+.|+....++++.+-.
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            56788999999999998888788777654

>PRK02888 nitrous-oxide reductase; Validated

Probab=82.75  E-value=2.8  Score=28.53  Aligned_cols=33  Identities=9%  Similarity=-0.055  Sum_probs=26.1

Q ss_pred             CCeEEEEECCCCCEEEEe-cCCCcEEEEECCCCC
Q 035276           19 IEVLCSTLKDDGITVFSG-GCDKQVKTWPLLSGG   51 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~-~~d~~v~iwd~~t~~   51 (69)
                      ..+..++++|||++++.+ ..+.++.+.|+.+.+
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            345678999999998655 578999999998743

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.33  E-value=1.3  Score=30.97  Aligned_cols=47  Identities=13%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEEEe
Q 035276           22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTIRL   68 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v~~   68 (69)
                      ..+.|+-....++..+....|++||+..|.. +..+++|...|..+.|
T Consensus       162 sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f  209 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF  209 (1081)
T ss_pred             ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence            3578888666666667777899999987654 4567788887777665

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=81.99  E-value=3.6  Score=23.35  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=18.4

Q ss_pred             CCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           27 KDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        27 s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ..++..|+.++.++.+..||+.+|+.
T Consensus       209 ~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  209 SVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             ECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             eeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            34566676666788888888888654

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=81.89  E-value=3.2  Score=26.54  Aligned_cols=32  Identities=9%  Similarity=0.032  Sum_probs=27.1

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ..-+..+-|...|.+|++|..+|.|.++.-+.
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~   56 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREK   56 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeeccc
Confidence            34467789999999999999999999998654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=81.79  E-value=2.2  Score=28.35  Aligned_cols=41  Identities=20%  Similarity=0.161  Sum_probs=30.3

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV   54 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~   54 (69)
                      .......++..++|||.|++|++....+ |.+|+-.....+.
T Consensus        27 ~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~   67 (561)
T COG5354          27 RFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV   67 (561)
T ss_pred             cccccCcchhheeecCcchheehhhccc-eEEccccchhhee
Confidence            3334567788899999999998876665 8999877654433

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.77  E-value=7.2  Score=28.69  Aligned_cols=50  Identities=6%  Similarity=-0.005  Sum_probs=34.3

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc---C-CCcEEEEEe
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM---H-DAPIKTIRL   68 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~---h-~~~i~~v~~   68 (69)
                      ....++++|+|.|+.++.|-..|++..|.-. ++....+..   . ...|.++.|
T Consensus       198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W  251 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW  251 (1405)
T ss_pred             ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence            4457889999999999999999999988643 232222211   1 355677766

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=81.76  E-value=10  Score=24.31  Aligned_cols=51  Identities=14%  Similarity=-0.071  Sum_probs=33.2

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE--ecc------CCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI--VAM------HDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~--~~~------h~~~i~~v~~   68 (69)
                      ..++|..++.| |=.+++.|..+|.+.+.|++....+..  +..      ....|.++.|
T Consensus        85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF  143 (395)
T PF08596_consen   85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF  143 (395)
T ss_dssp             -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred             cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE
Confidence            36789999997 677999999999999999966544432  222      2345666666

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.46  E-value=4.9  Score=25.17  Aligned_cols=30  Identities=13%  Similarity=0.091  Sum_probs=22.5

Q ss_pred             EEEECCCCCEEEEe-c----CCCcEEEEECCCCCc
Q 035276           23 CSTLKDDGITVFSG-G----CDKQVKTWPLLSGGQ   52 (69)
Q Consensus        23 ~~~~s~~~~~l~s~-~----~d~~v~iwd~~t~~~   52 (69)
                      ...++||+++++-+ +    ....++++|+.+++.
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~  162 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF  162 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence            57899999988643 2    224799999999754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=81.05  E-value=1.4  Score=26.13  Aligned_cols=55  Identities=16%  Similarity=0.156  Sum_probs=42.3

Q ss_pred             ccchhhhhhccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCc
Q 035276            3 TFGAAAVATNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAP   62 (69)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~   62 (69)
                      .||+....++.+..|...|+.+   |.+-.++..+.+..++++....  ....+++|...
T Consensus       140 yFG~~~~~l~IikcHqDevle~---PE~a~llasSe~ceve~fs~~~--~~l~fQGHPEy  194 (245)
T KOG3179|consen  140 YFGEIPKSLNIIKCHQDEVLEL---PEGAELLASSEKCEVEMFSIED--HLLCFQGHPEY  194 (245)
T ss_pred             hcccchhhhhHHhhcccceecC---CchhhhhccccccceEEEEecc--eEEEecCCchh
Confidence            5787777788888998888765   6677777788899999998754  56678888643

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.64  E-value=3.4  Score=27.83  Aligned_cols=37  Identities=11%  Similarity=0.192  Sum_probs=25.1

Q ss_pred             CCCEEEEecCCCcEEEEECCCCCc-cEEeccCCCcEEEE
Q 035276           29 DGITVFSGGCDKQVKTWPLLSGGQ-PVIVAMHDAPIKTI   66 (69)
Q Consensus        29 ~~~~l~s~~~d~~v~iwd~~t~~~-~~~~~~h~~~i~~v   66 (69)
                      ...+++.|+.+|.|++||- .+.. ...+++-..+|..|
T Consensus       440 ~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV  477 (644)
T KOG2395|consen  440 ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV  477 (644)
T ss_pred             CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence            3457889999999999997 4333 23456665665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-06

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 21  VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL 69
           VL     DDG  VF+  CDK  K W  LS  Q + +A HDAP+KTI  +
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWI 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.49
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.45
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.45
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.41
2pm7_B	297	Protein transport protein SEC13, protein transport	99.41
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.4
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.39
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.37
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.36
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.36
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.36
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.35
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.35
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.33
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.33
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.32
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.31
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.31
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.3
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.29
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.28
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.28
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.28
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.27
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.27
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.27
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.26
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.26
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.26
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.25
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.24
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.24
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.24
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.24
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.23
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.23
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.22
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.22
2pm7_B	297	Protein transport protein SEC13, protein transport	99.21
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.21
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.2
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.19
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.18
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.18
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.17
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.16
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.15
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.15
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.15
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.13
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.12
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.11
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.11
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.1
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.1
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.09
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.09
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.09
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.09
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.09
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.09
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.09
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.08
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.08
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.07
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.07
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.07
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.07
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.06
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.05
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.05
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.04
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.04
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.03
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.03
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.03
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.02
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.02
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.02
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.01
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.01
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.01
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.0
3jro_A	753	Fusion protein of protein transport protein SEC13	99.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.99
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.99
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.99
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.9
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.89
3jro_A	753	Fusion protein of protein transport protein SEC13	98.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.89
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.87
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.87
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.85
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.84
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.84
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.84
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.77
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.77
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.76
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.71
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.7
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.69
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	98.64
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.61
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.58
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.49
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.46
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.38
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	98.36
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.3
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.29
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.16
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.15
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.13
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.13
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.09
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.08
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.07
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.07
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.66
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.62
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.58
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.58
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.53
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	97.49
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.49
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.48
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.47
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	97.47
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.45
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.45
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.42
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.39
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.34
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.34
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.31
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.31
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.24
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.22
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.12
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.12
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.1
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.99
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.96
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.95
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.94
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	96.86
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	96.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	96.74
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.73
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.43
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.41
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	96.34
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.32
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.3
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.28
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	95.95
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	95.92
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.88
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.69
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.62
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	95.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.46
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	95.43
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	95.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	95.15
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	95.11
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.1
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.09
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	95.0
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	94.5
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.43
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.42
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.29
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	94.18
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	93.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.34
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	93.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	93.09
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	92.91
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	92.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	92.81
2qe8_A	343	Uncharacterized protein; structural genomics, join	92.73
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	92.32
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	91.65
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	91.35
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	91.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	90.86
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	90.51
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	89.93
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	89.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	89.6
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	89.55
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	89.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	89.42
2ece_A	462	462AA long hypothetical selenium-binding protein;	88.53
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	87.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	86.78
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	86.54
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	84.3
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	83.02
2p4o_A	306	Hypothetical protein; putative lactonase, structur	82.9
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	82.3
2ece_A	462	462AA long hypothetical selenium-binding protein;	82.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	81.43
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	80.17
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	80.13
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	80.12
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	80.09

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.49  E-value=1.1e-13  Score=82.56  Aligned_cols=57  Identities=14%  Similarity=0.100  Sum_probs=51.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|||++|++|+.|++|++||+++++++..+ .+|..+|.+++||
T Consensus       264 ~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          264 QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS  321 (365)
T ss_dssp             EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC
T ss_pred             eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC
Confidence            45678889999999999999999999999999999998877764 7899999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.45  E-value=2.2e-13  Score=83.76  Aligned_cols=57  Identities=25%  Similarity=0.283  Sum_probs=52.1

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.+.+|..+|.+++|+|||++|++++.|+.|++||. +++++..+.+|...|.+++|+
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fs   66 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS   66 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEEC
T ss_pred             eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEEC
Confidence            457799999999999999999999999999999995 567888899999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.45  E-value=5.4e-13  Score=79.27  Aligned_cols=56  Identities=18%  Similarity=0.165  Sum_probs=52.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+|...|.+++|+|++++|++++.|++|++||+.+++++..+.+|...|.+++|+
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~  178 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS  178 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence            34799999999999999999999999999999999988888999999999999885

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.41  E-value=1.7e-12  Score=76.94  Aligned_cols=59  Identities=8%  Similarity=-0.030  Sum_probs=53.3

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCc-EEEEECCCCCccEEec-c-CCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQ-VKTWPLLSGGQPVIVA-M-HDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~-v~iwd~~t~~~~~~~~-~-h~~~i~~v~~s   69 (69)
                      .....+|..+|.+++|+|++++|++++.|++ |++||+.+++++..+. + |...|.+++|+
T Consensus       188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC
T ss_pred             cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC
Confidence            3456789999999999999999999999999 9999999988888887 5 99999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.41  E-value=2.3e-12  Score=74.58  Aligned_cols=57  Identities=11%  Similarity=0.098  Sum_probs=50.6

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC--CccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG--GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~--~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|+|++|++|+.|++|++||+..+  +.+..+.+|..+|.+++|+
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s   62 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA   62 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEEC
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEec
Confidence            35689999999999999999999999999999999753  4567889999999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.40  E-value=1.7e-12  Score=75.01  Aligned_cols=57  Identities=12%  Similarity=0.074  Sum_probs=49.1

Q ss_pred             cCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCc-----cEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQ-----PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~-----~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|.++|.+++|+|+ +++|++|+.|++|++||+.+++.     ...+.+|...|.++.|+
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s   95 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS   95 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC
Confidence            46789999999999997 68999999999999999976543     34578899999999885

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.39  E-value=1.4e-12  Score=76.22  Aligned_cols=59  Identities=20%  Similarity=0.266  Sum_probs=53.7

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .....+|..+|.+++|+|++++|++++.|++|++||+.+++++..+.+|...|.++.|+
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~  116 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID  116 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc
Confidence            34456899999999999999999999999999999999988888899999999999885

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.37  E-value=3.7e-12  Score=74.87  Aligned_cols=58  Identities=16%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++.++++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s  127 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS  127 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC
Confidence            3456899999999999999999999999999999999988888899999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.36  E-value=3.6e-12  Score=74.78  Aligned_cols=57  Identities=18%  Similarity=0.148  Sum_probs=52.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|...|.+++|+|++++|++++.|++|++||+.+++++..+.+|...|.+++|+
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  299 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN  299 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC
Confidence            456789999999999999999999999999999999988888899999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.36  E-value=5.5e-12  Score=75.96  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=52.2

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+|..+|.+++|+|++++|++|+.|++|++||+.+++....+.+|...|.+++|+
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~  159 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD  159 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEc
Confidence            44789999999999999999999999999999999988888999999999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.36  E-value=1.3e-12  Score=76.28  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=46.1

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      .....+|..+|.+++|+|+|++|++|+.|++|++||+.++.  .+..+.+|..+|.+++|+
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~   66 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWA   66 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEEC
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeC
Confidence            33456899999999999999999999999999999998754  345688999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.35  E-value=1.1e-12  Score=78.11  Aligned_cols=58  Identities=12%  Similarity=0.124  Sum_probs=52.5

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.+.+|.++|.+++|+|++++|++|+.|++|++||+.++++...+..|...|.+++|+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s  117 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA  117 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEEC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEEC
Confidence            3467899999999999999999999999999999999988888888999999888875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.35  E-value=1.7e-12  Score=75.34  Aligned_cols=58  Identities=12%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +...+|..+|.+++|+|++++|++++.|++|++||++++..+..+..|..+|.+++|+
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~   64 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI   64 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEe
Confidence            3456799999999999999999999999999999999988888888999999998874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.33  E-value=8.4e-12  Score=73.36  Aligned_cols=58  Identities=9%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+|..+|.+++|+|++++|++++.|++|++||+.++..+..+..|...|.+++|+
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s  106 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA  106 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEEC
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEEC
Confidence            3456899999999999999999999999999999999988888888999999999885

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.33  E-value=8.2e-12  Score=74.15  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=51.3

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+|..+|.+++|+|++++|++++.|+.|++||+.+++++..+.+|...|.+++|+
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            4788999999999999999999999999999999988888899999999999885

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.3e-11  Score=71.70  Aligned_cols=57  Identities=18%  Similarity=0.204  Sum_probs=52.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~   83 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD   83 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEc
Confidence            456899999999999999999999999999999999988888899999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.31  E-value=1.7e-11  Score=70.84  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~   74 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS   74 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEc
Confidence            456899999999999999999999999999999999988888889999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.31  E-value=1e-11  Score=72.88  Aligned_cols=58  Identities=9%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++++|++++.|+.|++||+.++.....+.+|...|.+++|+
T Consensus       200 ~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s  257 (321)
T 3ow8_A          200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC  257 (321)
T ss_dssp             EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC
Confidence            3456789999999999999999999999999999999988888899999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.30  E-value=9.9e-12  Score=73.84  Aligned_cols=56  Identities=9%  Similarity=-0.118  Sum_probs=48.7

Q ss_pred             cCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|..+|.+++|+|++ ++|++++.|++|++||+.+++ +..+.+|...|.+++|+
T Consensus       252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~s  308 (344)
T 4gqb_B          252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWS  308 (344)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEEC
T ss_pred             EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEe
Confidence            455799999999999998 578999999999999999864 55678999999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.29  E-value=1.6e-11  Score=73.81  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+|...|.+++|+|+|++|++|+.|+.|++||+++++++..+.+|...+.++.|
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~  197 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW  197 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee
Confidence            4567888999999999999999999999999999998888889999999988876

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.28  E-value=1.2e-11  Score=73.23  Aligned_cols=58  Identities=17%  Similarity=0.195  Sum_probs=51.7

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +.+.+|..+|.+++|+|++++|++++.|++|++||..++.....+..|...|.+++|+
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~s  115 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYA  115 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEEC
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEEC
Confidence            3456899999999999999999999999999999999888777788888888888875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.28  E-value=2.6e-11  Score=71.30  Aligned_cols=57  Identities=23%  Similarity=0.365  Sum_probs=52.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|+++++++++.|+.|++||+.++.+...+.+|...|.+++|+
T Consensus       179 ~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~  235 (340)
T 1got_B          179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF  235 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc
Confidence            455789999999999999999999999999999999988888899999999999885

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.28  E-value=1.1e-11  Score=72.02  Aligned_cols=58  Identities=14%  Similarity=0.136  Sum_probs=52.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .....|..+|.+++|+|++++|++++.|++|++||+.+++++..+.+|...|.+++|+
T Consensus        49 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  106 (304)
T 2ynn_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH  106 (304)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence            3445788899999999999999999999999999999988888899999999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.27  E-value=3.3e-12  Score=76.59  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             cCCCCCCCeEEEEECC--------CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKD--------DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~--------~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|...|.+++|+|        |+++|++++.|++|++||+.++.+...+.+|..+|.+++|+
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~  195 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFR  195 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEEC
Confidence            4678999999999998        88999999999999999998877777777899999999884

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.27  E-value=1.9e-11  Score=70.09  Aligned_cols=57  Identities=18%  Similarity=0.080  Sum_probs=49.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC----ccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG----QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~----~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++++|++++.|+.|++||+.++.    ....+.+|...|.+++|+
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~   66 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA   66 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEEC
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEc
Confidence            456899999999999999999999999999999998754    334567899999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.27  E-value=1.2e-11  Score=74.42  Aligned_cols=58  Identities=14%  Similarity=0.172  Sum_probs=53.0

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~  201 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM  201 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe
Confidence            3456799999999999999999999999999999999988888889999999999885

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.26  E-value=3.6e-11  Score=71.40  Aligned_cols=57  Identities=21%  Similarity=0.355  Sum_probs=52.6

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            345899999999999999999999999999999999988888899999999999884

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.26  E-value=1.6e-11  Score=77.80  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=53.2

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|...|.+++|+|++++|++|+.|++|++||+.++.+...+.+|...|.+++|+
T Consensus       424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s  481 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS  481 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEe
Confidence            3456899999999999999999999999999999999988888889999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.26  E-value=2.8e-11  Score=74.43  Aligned_cols=57  Identities=23%  Similarity=0.309  Sum_probs=51.1

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+|..+|.+++|+||+++|++++.|++|++||+ +++++..+.+|...|.+++|+
T Consensus        51 ~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s  107 (577)
T 2ymu_A           51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS  107 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEEC
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEEC
Confidence            345689999999999999999999999999999996 457788899999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.25  E-value=3.4e-11  Score=70.62  Aligned_cols=57  Identities=19%  Similarity=0.186  Sum_probs=45.1

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-C---CccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS-G---GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t-~---~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|..+|.+++|+|++++|++++.|++|++||+.. +   +++..+.+|...|.+++|+
T Consensus       102 ~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X          102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            3567999999999999999999999999999999943 2   2345678999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.24  E-value=4.5e-11  Score=70.45  Aligned_cols=56  Identities=13%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+|..+|.+++|+|++++|++++.|+++++||+.++.  ++..+.+|...|.+++|+
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s  114 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA  114 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe
Confidence            35799999999999999999999999999999998753  356788999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.24  E-value=5.9e-11  Score=68.54  Aligned_cols=57  Identities=16%  Similarity=0.151  Sum_probs=52.1

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++++|++++.|+.|++||+.+++++..+.+|...|.++.|+
T Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  116 (312)
T 4ery_A           60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN  116 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            345789999999999999999999999999999999988888899999999999885

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.24  E-value=4.9e-11  Score=74.86  Aligned_cols=57  Identities=14%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-------cCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-------MHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-------~h~~~i~~v~~s   69 (69)
                      ...+|...|.+++|+||+++|++++.|++|++||+.++++...+.       +|...|.+++|+
T Consensus       185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s  248 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS  248 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred             eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence            456799999999999999999999999999999999887776663       799999999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.24  E-value=2.4e-11  Score=70.49  Aligned_cols=51  Identities=16%  Similarity=0.077  Sum_probs=47.6

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+|.+++|+|++++|++++.|+.|++||+.+++++..+.+|..+|.+++|+
T Consensus       274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  324 (368)
T 3mmy_A          274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN  324 (368)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC
T ss_pred             cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC
Confidence            379999999999999999999999999999988888899999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.23  E-value=3.2e-11  Score=71.59  Aligned_cols=57  Identities=9%  Similarity=-0.158  Sum_probs=48.2

Q ss_pred             ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++ ++|++++.|++|++||+++++.+.. .+|...|.+++|+
T Consensus       263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafs  320 (357)
T 4g56_B          263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWS  320 (357)
T ss_dssp             EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEEC
T ss_pred             EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEe
Confidence            3456789999999999987 5789999999999999998655544 4799999999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.23  E-value=1e-10  Score=69.74  Aligned_cols=57  Identities=16%  Similarity=0.170  Sum_probs=51.0

Q ss_pred             cCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCC-------CccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSG-------GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~-------~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+| ++++|++++.|+.|++||+.++       ..+..+.+|...|.+++|+
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  140 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH  140 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEEC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEEC
Confidence            4557999999999999 8999999999999999999886       4567788999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.22  E-value=7e-11  Score=74.16  Aligned_cols=57  Identities=16%  Similarity=0.250  Sum_probs=49.5

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc--cEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ--PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~--~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|...|.+++|+|||++|++|+.|++|++||+.+++.  ...+.+|..+|.+++|+
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs  112 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD  112 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEEC
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEEC
Confidence            4558999999999999999999999999999999976443  34678899999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.22  E-value=4.3e-11  Score=70.17  Aligned_cols=57  Identities=12%  Similarity=0.122  Sum_probs=50.3

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC--CccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG--GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~--~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++++|++++.|++|++||+.++  +++..+.+|...|.+++|+
T Consensus       148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~  206 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD  206 (330)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEec
Confidence            45679999999999999999999999999999998765  4567788999999999885

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.21  E-value=8.9e-11  Score=67.91  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             ccCCCCCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDD--GITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+|..+|.+++|+++  +++|++++.|++|++||+.++.  .+..+.+|...|.+++|+
T Consensus        47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~  108 (297)
T 2pm7_B           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWA  108 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEEC
T ss_pred             EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeC
Confidence            445689999999999874  8999999999999999998864  456678899999999885

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.9e-11  Score=71.26  Aligned_cols=57  Identities=12%  Similarity=0.104  Sum_probs=49.9

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC--CCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL--SGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~--t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++++|++++.|+.|++||+.  ++..+..+.+|...|.+++|+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~   64 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA   64 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeC
Confidence            445799999999999999999999999999999997  444556788999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.20  E-value=1.2e-10  Score=68.31  Aligned_cols=54  Identities=19%  Similarity=0.235  Sum_probs=48.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc-EEecc-CCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP-VIVAM-HDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~-~~~~~-h~~~i~~v~~s   69 (69)
                      .+..++.+++|+|++.+|++|+.|+.|++||+.+++.+ ..+.. |..+|.+++|+
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs  223 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA  223 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence            45567999999999999999999999999999998777 67777 99999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.19  E-value=1.1e-10  Score=69.74  Aligned_cols=52  Identities=15%  Similarity=0.339  Sum_probs=47.2

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...|.+++|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  174 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF  174 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc
Confidence            3358999999999999999999999999999987778889999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.18  E-value=1.5e-10  Score=66.34  Aligned_cols=55  Identities=11%  Similarity=0.155  Sum_probs=48.8

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+|...|.+++|+|++++|++|+.|++|++||+++++++..+.+|...+.++.+
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~  117 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW  117 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec
Confidence            4567888999999999999999999999999999998888888899888876653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.18  E-value=1.2e-10  Score=68.66  Aligned_cols=58  Identities=16%  Similarity=0.169  Sum_probs=49.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++++|++++.|++|++||+.++..   +..+.+|...|.+++|+
T Consensus        99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred             EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence            34568999999999999999999999999999999987543   34567899999999885

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.17  E-value=9.4e-11  Score=68.89  Aligned_cols=59  Identities=10%  Similarity=0.156  Sum_probs=46.6

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC---ccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG---QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~---~~~~~~~h~~~i~~v~~s   69 (69)
                      .....+|..+|.+++|+|++++|++++.|+.|++||+.++.   ....+.+|...|.+++|+
T Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  109 (377)
T 3dwl_C           48 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS  109 (377)
T ss_dssp             CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred             EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence            34556799999999999999999999999999999999866   456677899999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.16  E-value=2e-10  Score=66.60  Aligned_cols=59  Identities=15%  Similarity=0.320  Sum_probs=50.6

Q ss_pred             hccCCCCCCCeEEEEECCC---CCEEEEecCCCcEEEEECCC-CCcc-EEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDD---GITVFSGGCDKQVKTWPLLS-GGQP-VIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~v~iwd~~t-~~~~-~~~~~h~~~i~~v~~s   69 (69)
                      .....+|..+|.+++|+|+   |++|++++.|+.|++||+.+ +..+ ..+.+|...|.+++|+
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~   95 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS   95 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC
Confidence            3445689999999999999   59999999999999999987 4444 5678899999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.15  E-value=1.8e-10  Score=68.89  Aligned_cols=56  Identities=18%  Similarity=0.244  Sum_probs=51.2

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~  361 (393)
T 1erj_A          306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA  361 (393)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence            34788899999999999999999999999999999988888899999999998874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.15  E-value=2.2e-10  Score=75.78  Aligned_cols=56  Identities=16%  Similarity=0.243  Sum_probs=52.3

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+|...|.+++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s  666 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS  666 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEe
Confidence            34789999999999999999999999999999999988888899999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.15  E-value=2.8e-10  Score=67.41  Aligned_cols=56  Identities=13%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...|...|..++|+|+++.|++++.|++|++||+++++.+..+.+|...|.++.|+
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA  205 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence            34688999999999999999999999999999999988888899999999988763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.13  E-value=1.8e-10  Score=67.17  Aligned_cols=57  Identities=18%  Similarity=0.159  Sum_probs=48.8

Q ss_pred             cCCCCCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKD--DGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|..+|.+++|++  +++.|++++.|++|++||++++.  +...+.+|...|.+++|+
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~  112 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA  112 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEEC
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEEC
Confidence            4568999999999986  48899999999999999998864  345677899999999885

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.12  E-value=8.7e-11  Score=69.04  Aligned_cols=54  Identities=15%  Similarity=0.110  Sum_probs=48.7

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc----cEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ----PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~----~~~~~~h~~~i~~v~~s   69 (69)
                      .|..+|.+++|+|++++|++++.|+.|++||+.++++    +..+.+|..+|.+++|+
T Consensus       203 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (377)
T 3dwl_C          203 PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA  260 (377)
T ss_dssp             CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE
T ss_pred             cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc
Confidence            7889999999999999999999999999999999877    67788999999999884

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.11  E-value=1.3e-10  Score=73.82  Aligned_cols=58  Identities=12%  Similarity=0.174  Sum_probs=52.9

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +...+|..+|.+++|+|++++|++++.|+.|++||+.++..+..+.+|..+|.+++|+
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s   64 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI   64 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEe
Confidence            3456789999999999999999999999999999999988888888999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.11  E-value=2.7e-10  Score=68.77  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=45.8

Q ss_pred             CCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccE--EeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPV--IVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~--~~~~h~~~i~~v~~s   69 (69)
                      +|...|.+++|+| +++.|++|+.||.|++||+.+++...  .+.+|...|.+++|+
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~  173 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFN  173 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEEC
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEe
Confidence            5778899999999 56789999999999999998765443  456899999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.10  E-value=3.8e-10  Score=67.23  Aligned_cols=58  Identities=16%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             ccCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEe--ccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIV--AMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~--~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++ ..|++++.|+.|++||+.+++.+..+  ..|...|.+++|+
T Consensus       125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  185 (402)
T 2aq5_A          125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS  185 (402)
T ss_dssp             EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred             EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence            3455799999999999998 69999999999999999998777788  7899999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.10  E-value=5.9e-10  Score=65.78  Aligned_cols=57  Identities=11%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             cCCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCccEEec--cCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQPVIVA--MHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~~~~~~--~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++ ++|++++.|+.|++||+.+++....+.  +|...|.+++|+
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~  127 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFN  127 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeC
Confidence            456799999999999999 899999999999999999877665554  699999999884

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.09  E-value=4.6e-10  Score=74.25  Aligned_cols=58  Identities=21%  Similarity=0.303  Sum_probs=53.1

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~  708 (1249)
T 3sfz_A          651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT  708 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEe
Confidence            3445799999999999999999999999999999999988888899999999999885

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.09  E-value=2.4e-10  Score=68.05  Aligned_cols=58  Identities=10%  Similarity=0.131  Sum_probs=46.7

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCC-------CcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD-------APIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~-------~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++++|++++.|++|++||+.++.++..+..+.       ..|.+++|+
T Consensus       243 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          243 RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred             EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence            3456799999999999999999999999999999999977666554332       236777774

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.09  E-value=1.8e-10  Score=65.74  Aligned_cols=58  Identities=14%  Similarity=0.032  Sum_probs=51.4

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+.+|..+|.+++| +++++|++++.|+.|++||+.++.....+..|...|.+++|+
T Consensus        11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~   68 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD   68 (313)
T ss_dssp             EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE
T ss_pred             HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC
Confidence            3456789999999999 999999999999999999998877777788899999999884

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.09  E-value=5.4e-10  Score=68.75  Aligned_cols=58  Identities=9%  Similarity=0.017  Sum_probs=52.3

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~s   69 (69)
                      .....|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.+ |...|.+++|+
T Consensus       482 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s  540 (615)
T 1pgu_A          482 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK  540 (615)
T ss_dssp             ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred             cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEc
Confidence            45567899999999999999999999999999999999877777777 99999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.09  E-value=2.8e-10  Score=67.33  Aligned_cols=57  Identities=16%  Similarity=0.087  Sum_probs=51.6

Q ss_pred             cCC-CCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNP-NKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~-~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ... +|..+|.+++|+| ++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s  314 (416)
T 2pm9_A          256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA  314 (416)
T ss_dssp             CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred             EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC
Confidence            344 7889999999999 89999999999999999999988888889999999999885

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.09  E-value=4.9e-10  Score=67.52  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|+++.+++++.|+.|++||+.+++++..+.+|...|.++.|+
T Consensus       305 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  361 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS  361 (464)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence            345788999999999999999999999999999999988888899999999999875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.09  E-value=7.5e-10  Score=64.23  Aligned_cols=57  Identities=11%  Similarity=0.095  Sum_probs=50.4

Q ss_pred             cCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEe---ccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIV---AMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~---~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+| +++.|++++.|+.|++||+.+++.+..+   .+|...|.+++|+
T Consensus       110 ~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A          110 HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred             eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence            3446899999999999 8999999999999999999987777766   6899999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.09  E-value=8e-10  Score=64.92  Aligned_cols=57  Identities=14%  Similarity=0.231  Sum_probs=48.5

Q ss_pred             cCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEe-------------ccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIV-------------AMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~-------------~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+| ++++|++++.|+.|++||+.++.....+             .+|...|.+++|+
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  108 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWY  108 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEEC
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEc
Confidence            4457999999999999 9999999999999999999986654433             2599999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.09  E-value=6.8e-10  Score=64.82  Aligned_cols=57  Identities=16%  Similarity=0.330  Sum_probs=50.0

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|+++.|++++.|++|++||+.. .++..+.+|...|.+++|+
T Consensus       101 ~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~  157 (319)
T 3frx_A          101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVV  157 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEEC
T ss_pred             EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEc
Confidence            34557999999999999999999999999999999975 6777888999999988763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.08  E-value=4.6e-10  Score=71.50  Aligned_cols=50  Identities=10%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCc-------cEEe----ccCCCcEEEEEeC
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ-------PVIV----AMHDAPIKTIRLL   69 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~-------~~~~----~~h~~~i~~v~~s   69 (69)
                      .+.+++|+|||++|++|+.|++|++||+.++..       +..+    .+|..+|.+++|+
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS  191 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY  191 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence            599999999999999999999999999998643       3555    6788899999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.08  E-value=3.8e-10  Score=66.28  Aligned_cols=59  Identities=20%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             hccCCCCCCCeEEEEE-----CC-CCCEEEEecCCCcEEEEECCCCC-------ccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTL-----KD-DGITVFSGGCDKQVKTWPLLSGG-------QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~-----s~-~~~~l~s~~~d~~v~iwd~~t~~-------~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+.+|..+|.+++|     ++ ++++|++|+.|++|++||+..++       ....+.+|...|.+++|+
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~   85 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS   85 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC
Confidence            3456689999999999     77 89999999999999999997543       235678999999999885

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.07  E-value=5.2e-10  Score=65.22  Aligned_cols=59  Identities=12%  Similarity=-0.009  Sum_probs=52.6

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ......|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+..|..+|.+++|+
T Consensus       195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI  253 (372)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE
T ss_pred             eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEe
Confidence            34455788999999999999999999999999999999988888888999999999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.07  E-value=9e-10  Score=67.77  Aligned_cols=56  Identities=9%  Similarity=0.071  Sum_probs=50.4

Q ss_pred             CCC-CCCCeEEEEECC----------CCCEEEEecCCCcEEEEECCCC-CccEEeccCCCcEEEEEeC
Q 035276           14 NPN-KSIEVLCSTLKD----------DGITVFSGGCDKQVKTWPLLSG-GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~-~~~~v~~~~~s~----------~~~~l~s~~~d~~v~iwd~~t~-~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+ |..+|.+++|+|          ++++|++++.|+.|++||+.++ .++..+.+|...|.+++|+
T Consensus       526 ~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s  593 (615)
T 1pgu_A          526 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE  593 (615)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred             eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEc
Confidence            344 899999999999          9999999999999999999987 5677888999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.07  E-value=5.5e-10  Score=63.94  Aligned_cols=57  Identities=12%  Similarity=0.170  Sum_probs=48.9

Q ss_pred             cCCCCCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCC---------ccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKD--DGITVFSGGCDKQVKTWPLLSGG---------QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~iwd~~t~~---------~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|  ++++|++++.|+.|++||+.++.         .+..+..|...|.+++|+
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  119 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA  119 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEc
Confidence            3457899999999999  69999999999999999998763         356677899999999885

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.1e-09  Score=63.41  Aligned_cols=57  Identities=12%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .....|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|.+++|+
T Consensus        68 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~  124 (369)
T 3zwl_B           68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFS  124 (369)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEEC
T ss_pred             hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEc
Confidence            3455789999999999999999999999999999999987777665 88889998875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.07  E-value=3.1e-10  Score=74.46  Aligned_cols=54  Identities=9%  Similarity=0.004  Sum_probs=47.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC--------------------------------------------
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG--------------------------------------------   51 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~--------------------------------------------   51 (69)
                      +|...|.+++|+||+++|++|+.|++|++||+.+++                                            
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            788899999999999999999999999999997652                                            


Q ss_pred             -ccEEeccCCCcEEEEEeC
Q 035276           52 -QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        52 -~~~~~~~h~~~i~~v~~s   69 (69)
                       ++..+.+|...|++++||
T Consensus       566 ~~~~~l~~h~~~V~svafS  584 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNS  584 (902)
T ss_dssp             EEEEEECCCSCSEEEEEEC
T ss_pred             ceeEEEEcCCCcEEEEEec
Confidence             245677899999999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.06  E-value=4.6e-10  Score=68.58  Aligned_cols=58  Identities=5%  Similarity=-0.096  Sum_probs=49.5

Q ss_pred             ccCCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|+ +..|++++.|++|++||+.++.......+|...|.+++|+
T Consensus       143 ~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~ws  201 (434)
T 2oit_A          143 KLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWS  201 (434)
T ss_dssp             ECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEEC
T ss_pred             eccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEc
Confidence            344568999999999998 7899999999999999999875555566788999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.06  E-value=9.8e-10  Score=65.60  Aligned_cols=57  Identities=26%  Similarity=0.352  Sum_probs=51.5

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++++|++++.|+.|++||+.++.....+..|...|.+++|+
T Consensus       212 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  268 (401)
T 4aez_A          212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC  268 (401)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEEC
Confidence            345789999999999999999999999999999999977777888899999999885

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.05  E-value=7.4e-10  Score=66.77  Aligned_cols=57  Identities=18%  Similarity=0.357  Sum_probs=50.8

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|++ .+++++.|++|++||+.+++++..+.+|...|.+++|+
T Consensus       156 ~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  212 (464)
T 3v7d_B          156 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV  212 (464)
T ss_dssp             EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEe
Confidence            3455799999999999988 89999999999999999988888889999999998873

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.05  E-value=3.2e-10  Score=66.09  Aligned_cols=54  Identities=9%  Similarity=0.094  Sum_probs=48.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      .|..+|.+++|+|++++|++++.|+.|++||+.+++  .+..+.+|...|.+++|+
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~   61 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA   61 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEe
Confidence            478899999999999999999999999999998865  667788999999999884

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.05  E-value=3.2e-10  Score=74.37  Aligned_cols=56  Identities=7%  Similarity=-0.107  Sum_probs=47.0

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE-----Eec-cCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV-----IVA-MHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~-----~~~-~h~~~i~~v~~s   69 (69)
                      .+.+|.++|.+++|+||| +|++|+.|++|++||++++..+.     .+. +|...|++++||
T Consensus       570 ~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          570 AVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV  631 (902)
T ss_dssp             EECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred             EEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence            345699999999999999 99999999999999998754432     233 899999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.04  E-value=5.5e-10  Score=66.67  Aligned_cols=54  Identities=15%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC-----------ccEEeccCC------------CcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG-----------QPVIVAMHD------------APIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~-----------~~~~~~~h~------------~~i~~v~~s   69 (69)
                      .+..+|.+++|+|++++|++|+.|+.|++||+.+++           ....+.+|.            ..|.+++|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            457899999999999999999999999999998865           256778898            889999885

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.04  E-value=1.6e-09  Score=64.63  Aligned_cols=53  Identities=19%  Similarity=0.148  Sum_probs=49.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.++.|
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  184 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW  184 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE
Confidence            37889999999999999999999999999999998888888899999999887

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.04  E-value=5.3e-10  Score=71.03  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s  106 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH  106 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEe
Confidence            445789999999999999999999999999999999988888889999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.04  E-value=9.2e-10  Score=63.84  Aligned_cols=54  Identities=7%  Similarity=0.016  Sum_probs=48.8

Q ss_pred             CCCCCeEEEEECCC----CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDD----GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~----~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .|...|.+++|+|+    +++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  124 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH  124 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC
Confidence            36778999999999    6689999999999999999988888888999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.03  E-value=1.1e-09  Score=64.57  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=48.8

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec------cC---------------CCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA------MH---------------DAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~------~h---------------~~~i~~v~~s   69 (69)
                      |..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.      +|               ...|.+++|+
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~  363 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL  363 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence            88899999999999999999999999999999988878887      77               8999999884

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.03  E-value=8.6e-10  Score=64.24  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=50.4

Q ss_pred             ccCCCCCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDD--GITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+++  +++|++++.|+.|++||+.+++  ....+..|...|.+++|+
T Consensus        49 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  110 (379)
T 3jrp_A           49 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA  110 (379)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred             eEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC
Confidence            345679999999999987  9999999999999999999865  556677899999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.03  E-value=7.2e-10  Score=67.09  Aligned_cols=57  Identities=11%  Similarity=-0.107  Sum_probs=50.4

Q ss_pred             cCCCCCCCeEEEEECCC---CCEEEEecCCCcEEEEECCCCCccEE-eccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDD---GITVFSGGCDKQVKTWPLLSGGQPVI-VAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~v~iwd~~t~~~~~~-~~~h~~~i~~v~~s   69 (69)
                      ...+|...|.+++|+|+   +++|++++.|+.|++||+.++..+.. +.+|...|.+++|+
T Consensus       190 ~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s  250 (450)
T 2vdu_B          190 PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG  250 (450)
T ss_dssp             CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred             eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence            44568899999999999   99999999999999999998877766 56899999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.6e-09  Score=61.82  Aligned_cols=56  Identities=20%  Similarity=0.385  Sum_probs=49.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|..+|.+++|+|++ .+++++.|+.|++||+.+++....+..|...|.++.|+
T Consensus       220 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~  275 (313)
T 3odt_A          220 TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM  275 (313)
T ss_dssp             EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC
T ss_pred             hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc
Confidence            344688999999999999 58899999999999999988888888999999999885

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.02  E-value=1.9e-09  Score=63.52  Aligned_cols=57  Identities=12%  Similarity=0.167  Sum_probs=50.1

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC------ccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG------QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~------~~~~~~~h~~~i~~v~~s   69 (69)
                      .....+|..+|.+++|+|  ++|++++.|+.|++||+.+++      .+..+.+|...|.+++|+
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   71 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL   71 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe
Confidence            345668999999999998  899999999999999999876      567788999999999884

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.02  E-value=3.6e-10  Score=67.93  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=36.8

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ..+.+|..+|.+++|+|||++|++|+.|++|++||+.........
T Consensus       358 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchh
Confidence            345689999999999999999999999999999999765444333

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.01  E-value=2.3e-09  Score=64.01  Aligned_cols=56  Identities=4%  Similarity=0.086  Sum_probs=47.6

Q ss_pred             CCCCCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCCc----cEEeccCCC------------cEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDG-ITVFSGGCDKQVKTWPLLSGGQ----PVIVAMHDA------------PIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iwd~~t~~~----~~~~~~h~~------------~i~~v~~s   69 (69)
                      ...|...|.+++|+|++ +.|++++.|+.|++||+.++..    ...+.+|..            .|.+++|+
T Consensus       222 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  294 (447)
T 3dw8_B          222 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS  294 (447)
T ss_dssp             GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC
T ss_pred             ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEEC
Confidence            45788999999999998 9999999999999999998765    577777776            89999885

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.01  E-value=2e-09  Score=62.09  Aligned_cols=56  Identities=21%  Similarity=0.230  Sum_probs=46.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++++|++++.|+.|++||+.+.+++..+. +...|.++.|+
T Consensus       210 ~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~  265 (340)
T 4aow_A          210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFS  265 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecC
Confidence            445789999999999999999999999999999999877666665 44567777764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.01  E-value=5.8e-10  Score=64.61  Aligned_cols=69  Identities=12%  Similarity=0.131  Sum_probs=49.1

Q ss_pred             CcccchhhhhhccCCCCCCCeEEEEECCCCCEE-EEecC---CCcEEEEECCCCCccEE-eccCCCcEEEEEeC
Q 035276            1 MATFGAAAVATNQNPNKSIEVLCSTLKDDGITV-FSGGC---DKQVKTWPLLSGGQPVI-VAMHDAPIKTIRLL   69 (69)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~---d~~v~iwd~~t~~~~~~-~~~h~~~i~~v~~s   69 (69)
                      |+....+-.......+|..+|.+++|+|++..+ ++++.   |+.|++||+.+++.... ..+|..+|.+++|+
T Consensus         1 m~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~   74 (357)
T 3i2n_A            1 MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFG   74 (357)
T ss_dssp             ----CCCCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECT
T ss_pred             CCccChhHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEc
Confidence            444444444444556799999999999999765 45655   99999999998665433 34799999999885

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.00  E-value=8.2e-10  Score=63.86  Aligned_cols=56  Identities=4%  Similarity=-0.028  Sum_probs=48.6

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC---ccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG---QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~---~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+|...|.+++|+|++++|++++.|+.|++||+.++.   ....+.+|...|.+++|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~   65 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI   65 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC
Confidence            45899999999999999999999999999999998865   245556899999999884

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.00  E-value=2.7e-09  Score=62.80  Aligned_cols=52  Identities=21%  Similarity=0.481  Sum_probs=46.5

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      |..+|.+++|+|++++|++++.|+.|++|| .++..+..+.+|...|.+++|+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~  158 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN  158 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC
Confidence            677999999999999999999999999999 5567778888999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.00  E-value=1.7e-09  Score=62.50  Aligned_cols=51  Identities=14%  Similarity=0.198  Sum_probs=45.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccC-CCcEEEEE
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMH-DAPIKTIR   67 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h-~~~i~~v~   67 (69)
                      |..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.+| ..+|.+++
T Consensus       250 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             SCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred             cceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence            3458999999999999999999999999999998888888888 89888764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.00  E-value=3.1e-10  Score=72.90  Aligned_cols=57  Identities=12%  Similarity=0.098  Sum_probs=47.7

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC--CCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS--GGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t--~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|.++|.+++|+|++++|++|+.|+.|++||+..  +.....+.+|..+|.+++|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s   62 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA   62 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEec
Confidence            3568999999999999999999999999999999973  34556788999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.99  E-value=3.7e-09  Score=60.70  Aligned_cols=57  Identities=14%  Similarity=0.152  Sum_probs=50.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|...+.+++|+|+++++++++.|+.|++||+.+++....+..|...|.+++|+
T Consensus       136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence            344678889999999999999999999999999999987778888899999999885

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.99  E-value=1.8e-09  Score=63.83  Aligned_cols=55  Identities=5%  Similarity=-0.012  Sum_probs=48.4

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC----CCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS----GGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t----~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|..+|.+++|+|++++|++++.|+.|++||+.+    .+.+..+.+|...|.+++|+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~  122 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN  122 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence            35788999999999999999999999999999987    23567788999999999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.99  E-value=1.3e-09  Score=64.88  Aligned_cols=53  Identities=6%  Similarity=-0.017  Sum_probs=42.8

Q ss_pred             CCCCCeEEEEECCCCCEEEE--ecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFS--GGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s--~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+...+..++|+|||+++++  ++.|++|++||+++++++..+. |...|.+++|+
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fs  185 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFS  185 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEEC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEc
Confidence            34455888999999998764  4578999999999987766664 77889999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.98  E-value=2.3e-09  Score=64.19  Aligned_cols=52  Identities=12%  Similarity=0.152  Sum_probs=46.1

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v~~   68 (69)
                      |..+|.+++|+|++++|++++.|+.|++||+.+++++..+. .|..+|.++.|
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  265 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV  265 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence            78899999999999999999999999999999977767664 78888998865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.7e-09  Score=64.72  Aligned_cols=54  Identities=15%  Similarity=0.295  Sum_probs=45.8

Q ss_pred             CCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC---CCc---cEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLS---GGQ---PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t---~~~---~~~~~~h~~~i~~v~~s   69 (69)
                      .+|..+|.+++|+| ++++|++|+.|++|++||+.+   +..   ...+ +|...|.+++|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~  120 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMI  120 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEEC
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEe
Confidence            67899999999999 999999999999999999976   432   2233 599999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.95  E-value=6.9e-09  Score=59.33  Aligned_cols=54  Identities=11%  Similarity=0.131  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEe--cCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSG--GCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~--~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+...+..+.|+|+++.++++  +.|+.|++||+.+++++..+.+|...|.+++|+
T Consensus       238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s  293 (318)
T 4ggc_A          238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS  293 (318)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            356678899999999988664  479999999999998889999999999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.94  E-value=4.1e-09  Score=63.78  Aligned_cols=55  Identities=13%  Similarity=0.057  Sum_probs=46.5

Q ss_pred             CCCCCCeEEEEECCCCCEE-EEecCCCcEEEEECC--CCCccEEec--cCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLL--SGGQPVIVA--MHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~--t~~~~~~~~--~h~~~i~~v~~s   69 (69)
                      ++|...|.+++|+|++++| ++++.|+.|++||+.  +++.+..+.  .|...|.+++|+
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence            4677789999999999996 899999999999998  777776665  567889999885

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.93  E-value=6.5e-09  Score=61.31  Aligned_cols=53  Identities=11%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+...|.+++|+|++++|++++.|+.|++||+. ++.+..+.+|...|.+++|+
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEEC
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEEC
Confidence            456789999999999999999999999999994 57778888999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.93  E-value=4.4e-09  Score=61.95  Aligned_cols=57  Identities=12%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|..+|.+++|+|++++|++++.|+.|++||+.+++....+..|...|.++.|+
T Consensus       242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  298 (425)
T 1r5m_A          242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV  298 (425)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEE
T ss_pred             eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEEC
Confidence            344788899999999999999999999999999999988888888899999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.93  E-value=1e-08  Score=58.82  Aligned_cols=54  Identities=17%  Similarity=0.253  Sum_probs=46.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      .|..+|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...|.++.|+
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~  150 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS  150 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC
Confidence            688899999999999999999999999999998866  345677899999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.92  E-value=9.9e-09  Score=65.06  Aligned_cols=55  Identities=24%  Similarity=0.286  Sum_probs=49.6

Q ss_pred             CCCCCCeEEEEECCCC--CEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDG--ITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~--~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+|...|.+++|+|++  ..+++++.|+.|++||+.+++....+.+|...|.+++|+
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s  570 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS  570 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence            4688889999999987  579999999999999999887778889999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.90  E-value=6.5e-09  Score=60.18  Aligned_cols=53  Identities=19%  Similarity=0.241  Sum_probs=47.8

Q ss_pred             CCCCCeEEEEECCC---CCEEEEecCCCcEEEEECCCCC-ccEEeccCCCcEEEEEe
Q 035276           16 NKSIEVLCSTLKDD---GITVFSGGCDKQVKTWPLLSGG-QPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~~---~~~l~s~~~d~~v~iwd~~t~~-~~~~~~~h~~~i~~v~~   68 (69)
                      .|..+|.+++|+|+   +++|++++.|+.|++||+.+++ ....+.+|...|.++.|
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  119 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG  119 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEee
Confidence            57889999999998   6999999999999999999877 67888899999999865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.89  E-value=3.7e-09  Score=66.22  Aligned_cols=50  Identities=6%  Similarity=-0.010  Sum_probs=46.1

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .|.+++|+|+++.+++++.|++|++||+.++.++..+.+|...|.+++||
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S  406 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS  406 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC
Confidence            47889999999999999999999999999988878888999999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.89  E-value=5.4e-09  Score=67.23  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             ccCCCCCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDD--GITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+|..+|.+++|+|+  +++|++++.|+.|++||+.++.  ....+.+|...|.+++|+
T Consensus        47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~s  108 (753)
T 3jro_A           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA  108 (753)
T ss_dssp             EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred             eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEEC
Confidence            345689999999999998  9999999999999999998865  456678899999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.89  E-value=9e-09  Score=60.34  Aligned_cols=56  Identities=9%  Similarity=-0.018  Sum_probs=45.4

Q ss_pred             CCCCCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKD--DGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~s   69 (69)
                      ..+|..+|.+++|+|  +++++++++.|++|++||+.++++.... ..|...|.+++|+
T Consensus       121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~  179 (343)
T 3lrv_A          121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH  179 (343)
T ss_dssp             ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred             ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC
Confidence            346678899999999  9999999999999999999987775544 3456678888875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.89  E-value=1.6e-08  Score=61.04  Aligned_cols=55  Identities=20%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             CCCCCCeEEEEECCCCC-EEEEecCCCcEEEEECCC-CCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLS-GGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t-~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|..+|.+++|+|+++ .+++++.|+.|++||+.. ...+..+..|...|.+++|+
T Consensus       274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s  330 (430)
T 2xyi_A          274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  330 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC
T ss_pred             ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC
Confidence            47888999999999987 688999999999999987 44567888899999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.87  E-value=1e-08  Score=61.71  Aligned_cols=55  Identities=20%  Similarity=0.358  Sum_probs=45.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|  +++.|++|+.|+.|++||+.+++.+..+.+|...|.++.|+
T Consensus       168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  222 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN  222 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC
T ss_pred             EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc
Confidence            34578888888888  67888999999999999998887777888888888888764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.87  E-value=1.9e-08  Score=60.70  Aligned_cols=57  Identities=12%  Similarity=0.038  Sum_probs=49.1

Q ss_pred             cCCCCCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCC---CccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSG---GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~---~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|...|.+++|+| ++..+++++.|+.|++||+.++   .....+..|...|.+++|+
T Consensus       226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~  286 (430)
T 2xyi_A          226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN  286 (430)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred             eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence            4457899999999999 6788999999999999999876   3556777899999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.85  E-value=2.4e-08  Score=62.52  Aligned_cols=55  Identities=11%  Similarity=0.069  Sum_probs=45.5

Q ss_pred             CCCCCCeEEEEECCC------CCEEEEecCCCcEEEEECCCCCc-----------cEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDD------GITVFSGGCDKQVKTWPLLSGGQ-----------PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~------~~~l~s~~~d~~v~iwd~~t~~~-----------~~~~~~h~~~i~~v~~s   69 (69)
                      ..|.+.|.+++|+|+      +.+|++++.|++|++||+.++.+           ...+.+|...|.+++|+
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s  275 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL  275 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec
Confidence            346778999999997      57999999999999999987542           23567899999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.84  E-value=3.2e-09  Score=64.32  Aligned_cols=53  Identities=11%  Similarity=0.086  Sum_probs=37.5

Q ss_pred             CCCCCeEEEEECC---CCCEEEEecCCCcEEEEECCCCCccEEeccCCC---cEEEEEe
Q 035276           16 NKSIEVLCSTLKD---DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDA---PIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~---~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~---~i~~v~~   68 (69)
                      .|...+..++|++   +++.|++++.|++|++||+.+|+++..+.+|..   .+.+++|
T Consensus       176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            3444455556666   557788999999999999999998888876543   3444444

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.84  E-value=3e-08  Score=58.16  Aligned_cols=37  Identities=19%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG   51 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~   51 (69)
                      ..|..+|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence            5788999999999999999999999999999997654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.84  E-value=2e-08  Score=59.61  Aligned_cols=56  Identities=18%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc---CCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM---HDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~---h~~~i~~v~~   68 (69)
                      ...+|..+|.+++|+|+++.|++++.|+.|++||+.+++.+..+..   |...|.++.|
T Consensus       176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred             EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence            3457899999999999999999999999999999999877776653   5566666654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.77  E-value=1.9e-08  Score=60.72  Aligned_cols=52  Identities=13%  Similarity=0.061  Sum_probs=45.3

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +...+.+++|+|++++|++|+.|+.|++||+.. +++..+.+|...|.+++|+
T Consensus       208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             CSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEEC
T ss_pred             CCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeec
Confidence            344577899999999999999999999999875 6677788999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.77  E-value=1.4e-08  Score=64.79  Aligned_cols=54  Identities=7%  Similarity=0.102  Sum_probs=44.8

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc---EEe-ccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP---VIV-AMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~---~~~-~~h~~~i~~v~~s   69 (69)
                      ..+|...|.+++|+|||  +++++.|+++++||+..+...   ..+ .+|...|.+++|+
T Consensus       178 ~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          178 DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence            36788899999999999  888899999999999886532   345 4788899999885

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.76  E-value=1.6e-08  Score=60.91  Aligned_cols=56  Identities=18%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|...+.. ++.+++++|++++.|+.|++||+.+++.+..+.+|...|.++.|+
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  168 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR  168 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE
T ss_pred             EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec
Confidence            34578877644 355679999999999999999999988888899999999998873

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.71  E-value=7.4e-08  Score=57.99  Aligned_cols=55  Identities=18%  Similarity=0.303  Sum_probs=46.3

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ....+|..+|.+++|+  ++.+++++.|+.|++||+.+++.+..+.+|...|.++.|
T Consensus       153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~  207 (445)
T 2ovr_B          153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL  207 (445)
T ss_dssp             EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe
Confidence            3456788899999997  568999999999999999888777888889998988876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.70  E-value=9e-08  Score=57.63  Aligned_cols=51  Identities=22%  Similarity=0.309  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .|...|.+++|  +++++++|+.|+.|++||+.+++....+.+|...|.+++|
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  181 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY  181 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE
Confidence            45667887777  7899999999999999999998888889999999999886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.69  E-value=5.1e-08  Score=59.57  Aligned_cols=53  Identities=8%  Similarity=0.077  Sum_probs=41.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccC-------CCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMH-------DAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h-------~~~i~~v~~s   69 (69)
                      +|...|.+++|+|+|++|++|+.|++|++||+. +.....+..|       ...|.++.|+
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            477889999999999999999999999999998 4444444333       2367777773

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=98.64  E-value=9.8e-08  Score=57.89  Aligned_cols=40  Identities=10%  Similarity=0.059  Sum_probs=32.6

Q ss_pred             CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEE-EEEeC
Q 035276           30 GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIK-TIRLL   69 (69)
Q Consensus        30 ~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~-~v~~s   69 (69)
                      +..+++++.|++|++||+.+++++..+.+|...+. .++||
T Consensus       295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS  335 (356)
T 2w18_A          295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS  335 (356)
T ss_dssp             TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence            55789999999999999999998899988887654 57886

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.61  E-value=8.9e-08  Score=57.08  Aligned_cols=55  Identities=13%  Similarity=-0.065  Sum_probs=48.6

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+|...+.+++|+++++.+++++.|+.|++||+.+++....+..|...+.+++|+
T Consensus       166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~  220 (433)
T 3bws_A          166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYD  220 (433)
T ss_dssp             HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEE
T ss_pred             cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEc
Confidence            3677789999999999999999999999999999987777788888889888874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.58  E-value=2.5e-07  Score=55.95  Aligned_cols=55  Identities=11%  Similarity=0.013  Sum_probs=45.7

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCC---cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDK---QVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~---~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +..|...+.+++|+|||++|++++.|+   .|++||+.++++ ..+..|...+.+++||
T Consensus       174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~s  231 (415)
T 2hqs_A          174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFS  231 (415)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEEC
T ss_pred             EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-EEeecCCCcccCEEEc
Confidence            345778899999999999999998875   999999998655 4566788888888886

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.49  E-value=3.1e-07  Score=54.35  Aligned_cols=34  Identities=9%  Similarity=0.126  Sum_probs=32.2

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSG   50 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~   50 (69)
                      |..+|.+++|+|++++|++++.|++|++||+..+
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            8899999999999999999999999999999764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.46  E-value=8.9e-07  Score=52.11  Aligned_cols=50  Identities=10%  Similarity=0.114  Sum_probs=40.7

Q ss_pred             CCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~s   82 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS   82 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEEC
Confidence            347899999999987 677799999999999977766665444 78888875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.38  E-value=1.4e-06  Score=57.72  Aligned_cols=55  Identities=16%  Similarity=0.134  Sum_probs=46.7

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|...+..++|+|||++|++++.++.|++||+.+++....+.+|...+..++||
T Consensus       375 ~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S  429 (1045)
T 1k32_A          375 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  429 (1045)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence            3667789999999999999999999999999999977655566788888888775

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=98.36  E-value=1.3e-06  Score=52.30  Aligned_cols=41  Identities=7%  Similarity=-0.092  Sum_probs=35.2

Q ss_pred             CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ++.++++|+.|++|++||+.++.+...+.+|..+|.+++||
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs  368 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH  368 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc
Confidence            34466788899999999999988887778899999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.30  E-value=3.6e-06  Score=50.92  Aligned_cols=49  Identities=10%  Similarity=-0.018  Sum_probs=43.2

Q ss_pred             CeEEEEECCCCCEEEEecCCC---cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           20 EVLCSTLKDDGITVFSGGCDK---QVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~---~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+..++|+|||+.|+.++.++   .|.+||+.. +....+..|...|++++|+
T Consensus       355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l~~~~~~v~~~~~~  406 (415)
T 2hqs_A          355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWS  406 (415)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEECCCSSSEEEEEEEC
T ss_pred             CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEeeCCCCCCcCCccc
Confidence            788999999999998888777   799999874 6778888999999999996

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.29  E-value=1.4e-06  Score=48.88  Aligned_cols=54  Identities=6%  Similarity=-0.087  Sum_probs=40.5

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-CCccEEeccC-CCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS-GGQPVIVAMH-DAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t-~~~~~~~~~h-~~~i~~v~~s   69 (69)
                      ..|...+.+++|+|++++|++++ ++.|.+||+.+ ++.......| ...+.+++|+
T Consensus        38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            34677899999999999998876 77999999988 6655444444 3556666664

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.16  E-value=9.1e-06  Score=51.02  Aligned_cols=48  Identities=13%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEC--CCCCccEEeccCCCcEEEEEeC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPL--LSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~--~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +..++|+|||++|++++.|++|.+||+  .+++++..+. +...+..++||
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~s  230 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESS  230 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEEC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeC
Confidence            778999999999999999999999999  7776666665 44556777775

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.15  E-value=1.5e-05  Score=46.89  Aligned_cols=51  Identities=20%  Similarity=0.154  Sum_probs=39.4

Q ss_pred             CCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+.+++|+|+++.| ++++.|+.|++||+.+++....+..| ..+..+.|+
T Consensus       115 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~  166 (391)
T 1l0q_A          115 GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVT  166 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEEC
T ss_pred             CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEEC
Confidence            4467899999999987 68888999999999987666666544 345666664

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.13  E-value=1.4e-05  Score=47.55  Aligned_cols=54  Identities=6%  Similarity=-0.216  Sum_probs=41.3

Q ss_pred             CCCCCCeEEEEECCCCCEEE-EecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVF-SGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~-s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|...+.+++|+|+++.++ +++.|+.|++||+.+++....+..+ ..+.+++|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~  262 (433)
T 3bws_A          208 DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS  262 (433)
T ss_dssp             ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc
Confidence            35777899999999999885 5558999999999987665555543 446777664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.13  E-value=1.5e-05  Score=44.55  Aligned_cols=57  Identities=9%  Similarity=-0.027  Sum_probs=44.2

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEec-CCCcEEEEECC-CCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGG-CDKQVKTWPLL-SGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~-t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+...+..++|+|+++.|+.++ .++.+++|++. .+.....+..|...+..+.|+
T Consensus       167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s  225 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPS  225 (297)
T ss_dssp             ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEEC
T ss_pred             EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEEC
Confidence            3445677889999999999887655 58899999986 445667777787778888775

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.09  E-value=1.9e-06  Score=53.60  Aligned_cols=51  Identities=14%  Similarity=0.111  Sum_probs=39.5

Q ss_pred             CCCeEEEEECCCCCEEEEecC-CCcEEEEECCCCCccEEeccCC-CcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGC-DKQVKTWPLLSGGQPVIVAMHD-APIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~-d~~v~iwd~~t~~~~~~~~~h~-~~i~~v~~s   69 (69)
                      ..+|.+++|+|||++|+.++. |+++++|++.++ ....+..|. ..+..+.||
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~~~lt~~~~~~~~~~~~s   73 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ETVKLNREPINSVLDPHYG   73 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-EEEECCSSCCSEECEECTT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCC-CcEeeecccccccccccCC
Confidence            457999999999999998876 999999998654 445555554 577777765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.08  E-value=2e-06  Score=53.47  Aligned_cols=52  Identities=4%  Similarity=-0.086  Sum_probs=40.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCC--cEEEEECCCCCccEEeccCCCcEEE
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDK--QVKTWPLLSGGQPVIVAMHDAPIKT   65 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~--~v~iwd~~t~~~~~~~~~h~~~i~~   65 (69)
                      .+..+...+..++|+|||+.|+++..++  .|.+||+.+++.. .+.+|...+..
T Consensus       189 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~  242 (582)
T 3o4h_A          189 VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS  242 (582)
T ss_dssp             EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred             EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence            3456777789999999999999888888  8999999987655 55666555443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.07  E-value=1e-05  Score=48.19  Aligned_cols=47  Identities=6%  Similarity=0.034  Sum_probs=38.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCC--CccEEeccCCCcEEEEEe
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSG--GQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~--~~~~~~~~h~~~i~~v~~   68 (69)
                      +..++|+|||++|++++. +.|.+||+.++  +.+..+..+....+.+.+
T Consensus       307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence            788999999999998887 99999999998  666666556666666665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.07  E-value=7.6e-06  Score=51.94  Aligned_cols=41  Identities=17%  Similarity=0.177  Sum_probs=33.6

Q ss_pred             CCCeEEEEECCCCCEEEEecC-CC-----cEEEEECCCCCccEEecc
Q 035276           18 SIEVLCSTLKDDGITVFSGGC-DK-----QVKTWPLLSGGQPVIVAM   58 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~-d~-----~v~iwd~~t~~~~~~~~~   58 (69)
                      ...+..++|+|||++|++++. |+     .|.+||+.+++....+..
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~   82 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDS   82 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECG
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccch
Confidence            445889999999999999888 88     899999998766555443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.95  E-value=1.7e-05  Score=52.58  Aligned_cols=53  Identities=8%  Similarity=-0.026  Sum_probs=43.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCC----------cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDK----------QVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~----------~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .|...+..++|+|||++|+.++.++          .|++||+.+++ ...+..|...+..+.|+
T Consensus       418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~s  480 (1045)
T 1k32_A          418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFD  480 (1045)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEEC
T ss_pred             CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEc
Confidence            5777788999999999998876643          89999998864 66677788778877775

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.88  E-value=1.8e-05  Score=50.28  Aligned_cols=48  Identities=8%  Similarity=0.011  Sum_probs=39.6

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      +..++|+|||++|++++. +.|.+||+.++.  ....+..|...+..++||
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S  160 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS  160 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC
Confidence            678899999999988876 899999998862  455666788888888886

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.85  E-value=2.4e-05  Score=49.17  Aligned_cols=57  Identities=5%  Similarity=-0.008  Sum_probs=43.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEec-------CCCcEEEEECCCCCcc-EEe--------ccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGG-------CDKQVKTWPLLSGGQP-VIV--------AMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~-------~d~~v~iwd~~t~~~~-~~~--------~~h~~~i~~v~~s   69 (69)
                      .+..|...++.++|+||+++|++++       .+++|.+||+.++++. ..+        ..+...+..++|+
T Consensus       415 ~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  487 (543)
T 1nir_A          415 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN  487 (543)
T ss_dssp             EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC
T ss_pred             EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCC
Confidence            3445667778899999999999987       2779999999998776 333        3556777777765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.84  E-value=5.2e-05  Score=43.62  Aligned_cols=52  Identities=8%  Similarity=-0.045  Sum_probs=36.8

Q ss_pred             CCCCeEEEEECCCCCEEEEecC-CCcEEEEECCCCCc-cEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGC-DKQVKTWPLLSGGQ-PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~-d~~v~iwd~~t~~~-~~~~~~h~~~i~~v~~s   69 (69)
                      +...+ .++|+|++++++.++. ++.|.+||+.+++. ...+..+..+..+++|+
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s   92 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDIT   92 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEEC
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEEC
Confidence            34455 8999999997766554 88999999998776 55555555554435553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.81  E-value=6.2e-05  Score=47.63  Aligned_cols=48  Identities=8%  Similarity=0.063  Sum_probs=36.7

Q ss_pred             EEEEECCCCCEEEEecCCC----------------------------------cEEEEECCCCCccEEeccC------CC
Q 035276           22 LCSTLKDDGITVFSGGCDK----------------------------------QVKTWPLLSGGQPVIVAMH------DA   61 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~----------------------------------~v~iwd~~t~~~~~~~~~h------~~   61 (69)
                      ..++|+|||++|+.++.|.                                  .|.+||+.+++....+..+      ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            6899999999998877543                                  7999999887655555543      56


Q ss_pred             cEEEEEeC
Q 035276           62 PIKTIRLL   69 (69)
Q Consensus        62 ~i~~v~~s   69 (69)
                      .+..++||
T Consensus       256 ~~~~~~~S  263 (723)
T 1xfd_A          256 YITMVKWA  263 (723)
T ss_dssp             EEEEEEES
T ss_pred             eeEEEEEe
Confidence            67778775

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.80  E-value=5e-05  Score=43.42  Aligned_cols=40  Identities=18%  Similarity=0.203  Sum_probs=33.6

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM   58 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~   58 (69)
                      ..+..++|+||+++|++++.++.|++||+.+++.+..+..
T Consensus       280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            3467899999999999999999999999999877666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.78  E-value=1.9e-05  Score=49.93  Aligned_cols=49  Identities=6%  Similarity=-0.087  Sum_probs=35.1

Q ss_pred             CeEEEEECCCCCEEEEecCC---------CcEEEEECCCCCccEEe---ccCCCcEEEEEeC
Q 035276           20 EVLCSTLKDDGITVFSGGCD---------KQVKTWPLLSGGQPVIV---AMHDAPIKTIRLL   69 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d---------~~v~iwd~~t~~~~~~~---~~h~~~i~~v~~s   69 (69)
                      .+.+++|+|||++|++++.+         +.+.+||+.+++. ..+   .+|...+..++||
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~S  122 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWG  122 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBC
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEEC
Confidence            48899999999999988764         6788999998764 333   2344445555554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.75  E-value=7.1e-05  Score=42.90  Aligned_cols=52  Identities=13%  Similarity=0.088  Sum_probs=36.0

Q ss_pred             CCCCeEEEEECCCCCEEEEecCC-CcEEEEECC--CCCc--cEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCD-KQVKTWPLL--SGGQ--PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d-~~v~iwd~~--t~~~--~~~~~~h~~~i~~v~~s   69 (69)
                      +...+..++|+|++++|++++.+ +.|++||+.  ++..  +..+..+. .+..++|+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s   92 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTD   92 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEEC
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEc
Confidence            45567789999999999888776 899999997  4432  22333333 55666653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.66  E-value=0.00019  Score=41.02  Aligned_cols=49  Identities=6%  Similarity=0.120  Sum_probs=35.6

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+..++|+||+++++++  ++.|.+||+.+++.+..+.. ...+.+++|+
T Consensus       240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s  288 (337)
T 1pby_B          240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVS  288 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEEC
T ss_pred             CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEEC
Confidence            3456789999999999888  78999999988765555442 2344555553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.64  E-value=0.00013  Score=42.79  Aligned_cols=47  Identities=11%  Similarity=0.049  Sum_probs=34.0

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcE
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPI   63 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i   63 (69)
                      +...+..+.|+|||+.|+....++.+.+||+.+++.......+...+
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~  125 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWV  125 (388)
T ss_dssp             SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEE
T ss_pred             CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcc
Confidence            33334456899999999999999999999999876544444344333

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.63  E-value=9.5e-05  Score=42.67  Aligned_cols=52  Identities=12%  Similarity=0.080  Sum_probs=38.3

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc----CCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM----HDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~----h~~~i~~v~~   68 (69)
                      +...+..++|+|++++|+.+..++.+.+||+.+++....+..    +...+..++|
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL  238 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEE
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEE
Confidence            344467789999999999999999999999998766554432    3444555554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.62  E-value=0.00019  Score=41.74  Aligned_cols=51  Identities=12%  Similarity=0.110  Sum_probs=35.3

Q ss_pred             CCeEEEEECCCCCEEE-EecCCCcEEEEECCCCC---ccEEeccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITVF-SGGCDKQVKTWPLLSGG---QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~-s~~~d~~v~iwd~~t~~---~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+..++|+|||++|+ +...++.|.+||+....   .+..+..+...+..++|+
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~s  294 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLD  294 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEEC
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEEC
Confidence            3477899999999884 55568999999997322   233444555556677664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.58  E-value=0.00048  Score=39.54  Aligned_cols=51  Identities=14%  Similarity=0.020  Sum_probs=35.8

Q ss_pred             CCCeEEEEECCCCCEEEE-ecCCCcEEEEECCCCCc---cEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFS-GGCDKQVKTWPLLSGGQ---PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s-~~~d~~v~iwd~~t~~~---~~~~~~h~~~i~~v~~s   69 (69)
                      ...+..++|+|||++++. +..++.|.+||+.+++.   +..+..+ ..+..++|+
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~s  229 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVS  229 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEEC
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEEC
Confidence            345788999999997654 55789999999998776   5555433 344455553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.58  E-value=8.7e-05  Score=46.96  Aligned_cols=49  Identities=8%  Similarity=-0.006  Sum_probs=36.9

Q ss_pred             eEEEEECCCCCEEEEec---------------------------------CCCcEEEEECCCCCccEEe--ccCCCcEEE
Q 035276           21 VLCSTLKDDGITVFSGG---------------------------------CDKQVKTWPLLSGGQPVIV--AMHDAPIKT   65 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~---------------------------------~d~~v~iwd~~t~~~~~~~--~~h~~~i~~   65 (69)
                      +..++|+|||++|++++                                 .+..|.+||+.+++.....  ..|...+..
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            46789999999999887                                 4568999999886543222  246677888


Q ss_pred             EEeC
Q 035276           66 IRLL   69 (69)
Q Consensus        66 v~~s   69 (69)
                      ++||
T Consensus       263 ~~~s  266 (706)
T 2z3z_A          263 LSWS  266 (706)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            8885

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.53  E-value=0.00024  Score=41.54  Aligned_cols=51  Identities=8%  Similarity=0.057  Sum_probs=34.8

Q ss_pred             CCeEEEEECCCCCEEEEec-CCCcEEEEEC--CCCCccEEe-ccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITVFSGG-CDKQVKTWPL--LSGGQPVIV-AMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~--~t~~~~~~~-~~h~~~i~~v~~s   69 (69)
                      ..+..++|+|||++|++++ .++.|.+|++  ++++..... ..+...+.|+.|.
T Consensus       306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            3567899999999988877 6789999654  455432222 2244567888873

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=97.49  E-value=0.00072  Score=39.51  Aligned_cols=51  Identities=10%  Similarity=0.016  Sum_probs=33.5

Q ss_pred             CCCeEEEEECCCCCEEEEecC--CCcEEEEECC--CCCc--cEEeccCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGGC--DKQVKTWPLL--SGGQ--PVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~--d~~v~iwd~~--t~~~--~~~~~~h~~~i~~v~~s   69 (69)
                      ...+..++|+|||++|+.+..  ++.|.+|++.  ++..  +..+.. ...+..++|+
T Consensus       258 ~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s  314 (361)
T 3scy_A          258 AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT  314 (361)
T ss_dssp             CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred             CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence            344678999999999977665  4899999996  3331  222332 3445566664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.49  E-value=0.00015  Score=41.68  Aligned_cols=38  Identities=11%  Similarity=0.204  Sum_probs=32.0

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~   57 (69)
                      .+..++|+|++++|++++.++.|.+||+.+++.+..+.
T Consensus       296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            45689999999999888889999999999877666554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.48  E-value=0.0005  Score=39.49  Aligned_cols=48  Identities=6%  Similarity=-0.018  Sum_probs=35.2

Q ss_pred             CCeEEEEECC-CCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKD-DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~-~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+..++|+| |+++++++  ++.|.+||+.+++....+.. ...+..++|+
T Consensus       255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s  303 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFD  303 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEEC
T ss_pred             CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEEC
Confidence            3567889999 99999888  88999999998765555432 2334556654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.47  E-value=0.00035  Score=39.98  Aligned_cols=30  Identities=7%  Similarity=0.096  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCEEE-EecCCCcEEEEECC
Q 035276           19 IEVLCSTLKDDGITVF-SGGCDKQVKTWPLL   48 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~-s~~~d~~v~iwd~~   48 (69)
                      ..+..++|+|++++|+ ++..++.|.+||+.
T Consensus       231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          231 RWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            3466799999999886 55578999999997

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.47  E-value=0.0011  Score=38.33  Aligned_cols=53  Identities=9%  Similarity=0.033  Sum_probs=38.5

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +...+..++|+++++.++++..++.|.+||..+++.......+...+..++|+
T Consensus        43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~   95 (333)
T 2dg1_A           43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH   95 (333)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEEC
T ss_pred             cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEEC
Confidence            44456789999999977788889999999998765433332455667777653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=97.47  E-value=8.8e-05  Score=43.52  Aligned_cols=49  Identities=12%  Similarity=0.116  Sum_probs=32.5

Q ss_pred             ccCCCCCCCeEE-----EEECCCCCEEEEecC-CCc--EEEEECCCCCccEEeccCC
Q 035276           12 NQNPNKSIEVLC-----STLKDDGITVFSGGC-DKQ--VKTWPLLSGGQPVIVAMHD   60 (69)
Q Consensus        12 ~~~~~~~~~v~~-----~~~s~~~~~l~s~~~-d~~--v~iwd~~t~~~~~~~~~h~   60 (69)
                      .++..+......     .+|+|||++|+..+. ++.  |.+||+.+++......++.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~   80 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG   80 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC
Confidence            344455544554     789999999988776 663  8888988865444334443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.45  E-value=0.00032  Score=40.71  Aligned_cols=33  Identities=6%  Similarity=0.077  Sum_probs=27.5

Q ss_pred             CCCCeEEEEECCCCCEEEEec-CCCcEEEEECCC
Q 035276           17 KSIEVLCSTLKDDGITVFSGG-CDKQVKTWPLLS   49 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t   49 (69)
                      +...+..++|+|||++|++++ .++.+++||+..
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            455677899999999988877 778999999964

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.45  E-value=5.8e-05  Score=47.76  Aligned_cols=40  Identities=8%  Similarity=-0.123  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-----CCccEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS-----GGQPVIV   56 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t-----~~~~~~~   56 (69)
                      .+...+..++|+|||++|+.. .|+.|.+||+.+     ++.....
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~  162 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT  162 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec
Confidence            345567778999999999884 678999999988     6654433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.42  E-value=0.00027  Score=44.45  Aligned_cols=54  Identities=17%  Similarity=0.103  Sum_probs=37.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCC--------CcEEEEECC-CCC--ccEE-eccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCD--------KQVKTWPLL-SGG--QPVI-VAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d--------~~v~iwd~~-t~~--~~~~-~~~h~~~i~~v~~s   69 (69)
                      .+...+..++|+|||++|+..+.+        ..|.+||+. ++.  .... ..+|...+..+.|+
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s  250 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA  250 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence            444566778999999999877644        379999998 551  3333 34456777888775

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.39  E-value=0.00026  Score=40.81  Aligned_cols=48  Identities=10%  Similarity=-0.092  Sum_probs=34.6

Q ss_pred             eEEEEECCCCCEEEEec--CCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           21 VLCSTLKDDGITVFSGG--CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~--~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +..++|+|++++++.+.  .++.|.+||+.+++....+..+...+..+.|
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            57899999999887765  4788999999987666666534443444443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.38  E-value=6.4e-05  Score=47.72  Aligned_cols=48  Identities=6%  Similarity=-0.042  Sum_probs=35.6

Q ss_pred             EEEEECCCCCEEEEecCCC----------------------------------cEEEEECCCCCcc--------EEeccC
Q 035276           22 LCSTLKDDGITVFSGGCDK----------------------------------QVKTWPLLSGGQP--------VIVAMH   59 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~----------------------------------~v~iwd~~t~~~~--------~~~~~h   59 (69)
                      ..++|+|||++|+.++.|.                                  .|++||+.+++..        ..+.+|
T Consensus       172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            3789999999999877552                                  7889999886532        113357


Q ss_pred             CCcEEEEEeC
Q 035276           60 DAPIKTIRLL   69 (69)
Q Consensus        60 ~~~i~~v~~s   69 (69)
                      ...+..++||
T Consensus       252 ~~~~~~~~~S  261 (719)
T 1z68_A          252 DYYFSWLTWV  261 (719)
T ss_dssp             CEEEEEEEES
T ss_pred             cceEEEeEEe
Confidence            7788888885

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.38  E-value=0.0002  Score=44.98  Aligned_cols=53  Identities=11%  Similarity=0.008  Sum_probs=37.6

Q ss_pred             CCCCeEEEEECCCCCEEEEecCC----------CcEEEEECCCC-----CccEEec-cCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCD----------KQVKTWPLLSG-----GQPVIVA-MHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d----------~~v~iwd~~t~-----~~~~~~~-~h~~~i~~v~~s   69 (69)
                      +...+..++|+|||+.|+..+.|          ..|.+||+.++     .....+. .+...+..++||
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S  196 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLS  196 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEEC
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceEC
Confidence            55667889999999999988876          58999999872     2344454 444555555554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.34  E-value=0.00049  Score=42.10  Aligned_cols=51  Identities=8%  Similarity=0.081  Sum_probs=38.9

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc--cEEe------c---cCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ--PVIV------A---MHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~--~~~~------~---~h~~~i~~v~~s   69 (69)
                      +...|.+++|+|+|  ++.+..|+++++|+...+..  ...+      .   +|...|.++.|.
T Consensus       161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl  222 (388)
T 1xip_A          161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL  222 (388)
T ss_dssp             EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES
T ss_pred             ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe
Confidence            34578999999999  67788999999998876543  3344      2   377889888884

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.34  E-value=0.0017  Score=38.26  Aligned_cols=52  Identities=12%  Similarity=0.045  Sum_probs=36.3

Q ss_pred             CCCeEEEEECCCCCEEEEec-CCCcEEEEECC-CCCcc--EEec--cCCCcEEEEEeC
Q 035276           18 SIEVLCSTLKDDGITVFSGG-CDKQVKTWPLL-SGGQP--VIVA--MHDAPIKTIRLL   69 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~-t~~~~--~~~~--~h~~~i~~v~~s   69 (69)
                      ...+..++|+|||++|+++. .+..|.+||+. +++..  ..+.  .|...+..++|+
T Consensus       144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s  201 (365)
T 1jof_A          144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH  201 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence            45678899999999887765 46799999998 65432  2222  235567777764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.31  E-value=0.00025  Score=45.34  Aligned_cols=38  Identities=11%  Similarity=0.064  Sum_probs=28.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCC-----cEEEEECCCCCccE
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDK-----QVKTWPLLSGGQPV   54 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~-----~v~iwd~~t~~~~~   54 (69)
                      +...+..++|||||++|+.+..++     .|++||+.+++...
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~  165 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP  165 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc
Confidence            334577899999999987654432     89999999876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.31  E-value=0.00018  Score=45.96  Aligned_cols=38  Identities=13%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEECCCCCEEE-----EecCCCcEEEEECCCCCcc
Q 035276           16 NKSIEVLCSTLKDDGITVF-----SGGCDKQVKTWPLLSGGQP   53 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~-----s~~~d~~v~iwd~~t~~~~   53 (69)
                      +|...+..++|||||++|+     .|+.+..|++||+.+++..
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~  160 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS  160 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc
Confidence            3444678899999999987     4455679999999987653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.24  E-value=0.00046  Score=44.40  Aligned_cols=47  Identities=6%  Similarity=-0.086  Sum_probs=36.5

Q ss_pred             EEEEECCCCCEEEEecCC---------CcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           22 LCSTLKDDGITVFSGGCD---------KQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d---------~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+++|||||++|+.++.+         +.+.+||+.+++ ...+..|...+..++||
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~~~~S  120 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWS  120 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEEC
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc-EEEcccCCCcceeeEEC
Confidence            457899999999988876         456699999864 34466677788888886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.22  E-value=0.00022  Score=45.88  Aligned_cols=40  Identities=8%  Similarity=0.121  Sum_probs=32.7

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCC
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDA   61 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~   61 (69)
                      ....+.|+||+++++++  |+.|++||+.++++...+.+|..
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~   57 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF   57 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh
Confidence            35678999999988886  99999999999887666666653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.12  E-value=0.0013  Score=37.97  Aligned_cols=48  Identities=10%  Similarity=0.072  Sum_probs=32.1

Q ss_pred             CeEEEEECCCCCEEEEecCC---C--cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           20 EVLCSTLKDDGITVFSGGCD---K--QVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d---~--~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+..++|+|||++|+..+.+   +  .|.+||+.+++.. .+..+.. +..++|+
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~~~-~~~~~ws  112 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK-KILEAKN-IRSLEWN  112 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-EEEEESE-EEEEEEC
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-EEEcCCC-ccceeEC
Confidence            45678999999999876643   2  4778888775433 3333333 7777775

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.12  E-value=0.0039  Score=39.67  Aligned_cols=48  Identities=21%  Similarity=0.207  Sum_probs=35.1

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECC--CCCccEEeccCCCcEEEEEe
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLL--SGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~--t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+..+.|+|||+++++++.|+.|.+||+.  +++.+..+.... ....++|
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~  247 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIET  247 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEE
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEE
Confidence            45688999999999999999999999995  665555554322 2344444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.10  E-value=0.0004  Score=44.08  Aligned_cols=46  Identities=9%  Similarity=0.093  Sum_probs=33.7

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCC---cEEEEEeC
Q 035276           23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDA---PIKTIRLL   69 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~---~i~~v~~s   69 (69)
                      +++|+||++++++ +.|+.|++||+.+++....+..|..   .+.+++||
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S   68 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS   68 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEEC
Confidence            6799999965555 4699999999999776555554433   36677765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.99  E-value=0.0051  Score=35.36  Aligned_cols=50  Identities=8%  Similarity=-0.065  Sum_probs=40.2

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+..++++++|+..++...++.|.+||..+++.+..+..+...+.+++|
T Consensus       199 ~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f  248 (297)
T 3g4e_A          199 QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF  248 (297)
T ss_dssp             CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred             CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence            44677899999987777777788999999888877777767677888877

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.96  E-value=0.0093  Score=33.87  Aligned_cols=50  Identities=4%  Similarity=-0.024  Sum_probs=38.5

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+..++++++|+.+++...++.|.+||..+++....+..+...+.+++|
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~  275 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE
Confidence            45678999999998887777889999998876666666556566777765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.95  E-value=0.0098  Score=34.65  Aligned_cols=52  Identities=8%  Similarity=-0.166  Sum_probs=37.3

Q ss_pred             CCCCeEEEEECCCCCEEEEecCC------------------------CcEEEEECCCCCccEEec-cCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCD------------------------KQVKTWPLLSGGQPVIVA-MHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d------------------------~~v~iwd~~t~~~~~~~~-~h~~~i~~v~~   68 (69)
                      ..+.+..++++|+|+.+++...+                        +.|.+||..+++....+. ++...+..+++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence            35568999999999988887777                        479999998876654443 33345555554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.94  E-value=0.0035  Score=35.72  Aligned_cols=50  Identities=8%  Similarity=-0.133  Sum_probs=37.9

Q ss_pred             CCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +......++|+|+++ .++++..++.|..||..++  ...+..+...+..+++
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~   76 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCL   76 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeE
Confidence            444567899999998 6778888999999999875  5555556666777665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=96.86  E-value=0.0053  Score=35.79  Aligned_cols=50  Identities=6%  Similarity=-0.070  Sum_probs=35.9

Q ss_pred             CCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEe--ccCCCcEEEEEe
Q 035276           19 IEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIV--AMHDAPIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~--~~h~~~i~~v~~   68 (69)
                      ..+..++++|+ +..+++...++.|++||..+++.+..+  ..+...+..++|
T Consensus       196 ~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~  248 (329)
T 3fvz_A          196 SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY  248 (329)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence            34788999998 666677778899999999877766655  334445555544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=96.83  E-value=0.0067  Score=37.13  Aligned_cols=48  Identities=13%  Similarity=0.109  Sum_probs=36.1

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +.. |..++|  |+..|+.+ .++.|++||+.+......+..|...+..+++
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~  134 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKN  134 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEE
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEe
Confidence            445 889999  88999888 8889999999875554555667777766654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.81  E-value=0.0018  Score=38.58  Aligned_cols=44  Identities=5%  Similarity=-0.069  Sum_probs=33.4

Q ss_pred             EEECCCCCEEEEecC-----------CCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           24 STLKDDGITVFSGGC-----------DKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        24 ~~~s~~~~~l~s~~~-----------d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ++|+||+++++.+..           +..|.+||+.+++.+..+..+.  +..++|+
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~s  313 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTID  313 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEE
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEEC
Confidence            689999998877543           3479999999988777777665  6666663

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=96.74  E-value=0.00093  Score=39.41  Aligned_cols=32  Identities=16%  Similarity=0.134  Sum_probs=25.0

Q ss_pred             CeEEEE-ECCCCCEEEEecCCC------cEEEEECC-CCC
Q 035276           20 EVLCST-LKDDGITVFSGGCDK------QVKTWPLL-SGG   51 (69)
Q Consensus        20 ~v~~~~-~s~~~~~l~s~~~d~------~v~iwd~~-t~~   51 (69)
                      .+..++ |+|||++|++++.+.      .|++|++. +++
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence            477899 999999988765432      79999996 444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.73  E-value=0.0045  Score=39.58  Aligned_cols=48  Identities=8%  Similarity=-0.045  Sum_probs=34.1

Q ss_pred             EEEEECCCCCEEEEecCCCc-------------EEEEECCCCCcc--E--EeccCCCcEEEEEeC
Q 035276           22 LCSTLKDDGITVFSGGCDKQ-------------VKTWPLLSGGQP--V--IVAMHDAPIKTIRLL   69 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~-------------v~iwd~~t~~~~--~--~~~~h~~~i~~v~~s   69 (69)
                      ..++|+|||+.|+.++.|..             |.+|++.++...  .  ....|...+..+.||
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence            56899999999998888776             999999886521  2  223344556666664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.65  E-value=0.001  Score=42.90  Aligned_cols=35  Identities=20%  Similarity=0.099  Sum_probs=27.2

Q ss_pred             CCeEEEEECCCCCEEEEecCC-----CcEEEEECCCCCcc
Q 035276           19 IEVLCSTLKDDGITVFSGGCD-----KQVKTWPLLSGGQP   53 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d-----~~v~iwd~~t~~~~   53 (69)
                      ..+..++|||||++|+.+..+     ..|++||+.+++..
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~  202 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL  202 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC
Confidence            356789999999998765543     46999999997653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.43  E-value=0.029  Score=31.59  Aligned_cols=49  Identities=6%  Similarity=0.046  Sum_probs=34.3

Q ss_pred             CCeEEEEECCCCCEEEEecCCC-cEEEEECCCCCccEEeccCCC--cEEEEEe
Q 035276           19 IEVLCSTLKDDGITVFSGGCDK-QVKTWPLLSGGQPVIVAMHDA--PIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~-~v~iwd~~t~~~~~~~~~h~~--~i~~v~~   68 (69)
                      ..+..++++++|+.+++...++ .|.+||.. ++.+..+..+..  .+..+++
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEE
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEE
Confidence            5678999999999888877775 99999954 455555544432  2445554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.42  E-value=0.013  Score=37.60  Aligned_cols=49  Identities=14%  Similarity=0.114  Sum_probs=33.1

Q ss_pred             eEEEEECCCCCEEEEecCCCc----------------EEEEECCCCCcc--EEe--ccCCCcEEEEEeC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQ----------------VKTWPLLSGGQP--VIV--AMHDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~----------------v~iwd~~t~~~~--~~~--~~h~~~i~~v~~s   69 (69)
                      +..++|+|||+.|+.+..++.                |.+|++.++...  ..+  ..|...+..+.||
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S  241 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS  241 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc
Confidence            345899999999988877765                999999876532  222  2244445566654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.42  E-value=0.0018  Score=41.52  Aligned_cols=37  Identities=11%  Similarity=0.026  Sum_probs=28.0

Q ss_pred             CCCCeEEEEECCCCCEEEE-----ecCCCcEEEEECCCCCcc
Q 035276           17 KSIEVLCSTLKDDGITVFS-----GGCDKQVKTWPLLSGGQP   53 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s-----~~~d~~v~iwd~~t~~~~   53 (69)
                      +...+..++|||||++|+-     |+.+..|++||+.+++.+
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~  168 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL  168 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC
Confidence            4456778899999998873     333468999999997643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.41  E-value=0.027  Score=31.70  Aligned_cols=40  Identities=5%  Similarity=0.032  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ++...+..++++++++.+++...++.|++||.. ++....+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~   66 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQF   66 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEe
Confidence            455668899999999988888889999999976 4554444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=96.34  E-value=0.053  Score=31.12  Aligned_cols=52  Identities=10%  Similarity=-0.031  Sum_probs=34.9

Q ss_pred             CCCCeEEEEECCCCCEEEEecCC----CcEEEEECCCCCccEEec--cCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCD----KQVKTWPLLSGGQPVIVA--MHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d----~~v~iwd~~t~~~~~~~~--~h~~~i~~v~~   68 (69)
                      +...+..++|+++++.+++...+    +.|.+||..++.....+.  .+...+..+.+
T Consensus        85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~  142 (333)
T 2dg1_A           85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF  142 (333)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred             CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence            44568899999999987776666    689999988754432222  23344555554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.32  E-value=0.012  Score=34.29  Aligned_cols=33  Identities=15%  Similarity=0.063  Sum_probs=27.2

Q ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      +.|+|||++|+..+.++.|.+||+.+++.....
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~  118 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIY  118 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE
Confidence            679999999998888889999999886544333

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.30  E-value=0.014  Score=33.65  Aligned_cols=50  Identities=12%  Similarity=-0.053  Sum_probs=36.2

Q ss_pred             CCCCCeEE-EEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLC-STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~-~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+...+.. +.|+ |+ .++++..++.+++| +.+++ ...+..+...|..+.|+
T Consensus       260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~~~~~s  310 (347)
T 2gop_A          260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIMGFDVD  310 (347)
T ss_dssp             TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS-EEEEECSSSEEEEEEES
T ss_pred             cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEEeeeee
Confidence            45566776 8999 88 88888999999999 87543 34444456677777664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.28  E-value=0.021  Score=34.36  Aligned_cols=36  Identities=14%  Similarity=0.180  Sum_probs=30.5

Q ss_pred             CeEEEEECCCCC-EEEEec-CCCcEEEEECCCCCccEE
Q 035276           20 EVLCSTLKDDGI-TVFSGG-CDKQVKTWPLLSGGQPVI   55 (69)
Q Consensus        20 ~v~~~~~s~~~~-~l~s~~-~d~~v~iwd~~t~~~~~~   55 (69)
                      ....++|+|||+ .++++. .++.|.++|+.+++.+..
T Consensus       319 ~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            467889999999 788887 589999999999877665

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=95.95  E-value=0.013  Score=33.80  Aligned_cols=39  Identities=3%  Similarity=-0.120  Sum_probs=29.3

Q ss_pred             CCCEEEEecCCCcEEEEECCCCCccEEeccCC-CcEEEEE
Q 035276           29 DGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD-APIKTIR   67 (69)
Q Consensus        29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~-~~i~~v~   67 (69)
                      .++.|++++.|+.|++||.++|+.+..+..+. ..+..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~   43 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVA   43 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeE
Confidence            46788999999999999998988777776554 2344443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=95.92  E-value=0.019  Score=32.60  Aligned_cols=47  Identities=11%  Similarity=-0.003  Sum_probs=33.8

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ...+..++++++|+.+++.  ++.|.+||.. ++.+..+..+.. +.+++|
T Consensus       217 ~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f  263 (296)
T 3e5z_A          217 PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCF  263 (296)
T ss_dssp             SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEE
T ss_pred             CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEE
Confidence            3345578999999866655  7889999986 566666665655 666665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.88  E-value=0.002  Score=37.67  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=22.9

Q ss_pred             eEEEEECCCCCEEEEecC---CCcEEEEECCCCC
Q 035276           21 VLCSTLKDDGITVFSGGC---DKQVKTWPLLSGG   51 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~---d~~v~iwd~~t~~   51 (69)
                      +..++|+|||++|+....   +..|.+||+.+++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~   71 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ   71 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc
Confidence            556789999999876543   2468888988754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.69  E-value=0.03  Score=34.33  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=30.5

Q ss_pred             CeEEEEECCCCC-EEEEe-cCCCcEEEEECCCCCccEEec
Q 035276           20 EVLCSTLKDDGI-TVFSG-GCDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        20 ~v~~~~~s~~~~-~l~s~-~~d~~v~iwd~~t~~~~~~~~   57 (69)
                      ++..+++++|++ .|++. ..++.|.++|..+++.+..+.
T Consensus       332 ~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          332 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence            456789999997 77765 458999999999988776653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.62  E-value=0.026  Score=34.18  Aligned_cols=41  Identities=10%  Similarity=0.153  Sum_probs=31.7

Q ss_pred             CeEEEEECCCCCE-EEEec-CCCcEEEEECCCCCccEEeccCC
Q 035276           20 EVLCSTLKDDGIT-VFSGG-CDKQVKTWPLLSGGQPVIVAMHD   60 (69)
Q Consensus        20 ~v~~~~~s~~~~~-l~s~~-~d~~v~iwd~~t~~~~~~~~~h~   60 (69)
                      ....++|+||+++ +++.. .++.|.++|+.+++.+..+....
T Consensus       315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence            3567899999985 56666 58999999999987777775443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=95.48  E-value=0.13  Score=29.99  Aligned_cols=49  Identities=8%  Similarity=-0.039  Sum_probs=36.2

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+..++++++|...++...++.|.+||. +++.+..+..+...+.+++|
T Consensus       230 ~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          230 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEE
Confidence            34567899999987776666788999998 55665666656666777776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.46  E-value=0.14  Score=28.31  Aligned_cols=50  Identities=10%  Similarity=-0.037  Sum_probs=33.5

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+..++++++|...++...++.|.+||............+...+..+++
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~  241 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV  241 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence            55788999999977777777889999998664322222223344556554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=95.43  E-value=0.037  Score=34.28  Aligned_cols=36  Identities=8%  Similarity=0.136  Sum_probs=30.9

Q ss_pred             eEEEEECCCCC-EEEEec-CCCcEEEEECCCCCccEEe
Q 035276           21 VLCSTLKDDGI-TVFSGG-CDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        21 v~~~~~s~~~~-~l~s~~-~d~~v~iwd~~t~~~~~~~   56 (69)
                      ...++|+||++ ++++.+ .++.|.++|+.+++.+..+
T Consensus       372 P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          372 IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            55689999999 888888 5899999999998877665

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=95.42  E-value=0.045  Score=36.92  Aligned_cols=37  Identities=8%  Similarity=-0.056  Sum_probs=31.6

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI   55 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~   55 (69)
                      ..+.+++..++..++++-+.|+++|+|++.++.++..
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            3567788888999999999999999999999877554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=95.15  E-value=0.085  Score=31.69  Aligned_cols=34  Identities=6%  Similarity=-0.082  Sum_probs=27.1

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCCccEEe
Q 035276           23 CSTLKDDGITVFSGG----------CDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~----------~d~~v~iwd~~t~~~~~~~   56 (69)
                      .++++||+++|+.+.          .++.|.+||..+.+....+
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i  113 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI  113 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEE
Confidence            889999999998876          3678999999886654443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=95.11  E-value=0.013  Score=35.58  Aligned_cols=35  Identities=6%  Similarity=-0.076  Sum_probs=29.4

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCCccEEec
Q 035276           23 CSTLKDDGITVFSGG----------CDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~----------~d~~v~iwd~~t~~~~~~~~   57 (69)
                      .+.++||+++++.+.          .++.|.+||+.+++....+.
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            689999999998886          36789999999987776653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.10  E-value=0.078  Score=29.99  Aligned_cols=34  Identities=12%  Similarity=0.085  Sum_probs=26.8

Q ss_pred             CCeEEEEECCCCCEEEE-------ecCCCcEEEEECCCCCc
Q 035276           19 IEVLCSTLKDDGITVFS-------GGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s-------~~~d~~v~iwd~~t~~~   52 (69)
                      ..+.+++|+++++.+++       +..++.|.+||..+++.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~   58 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK   58 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE
Confidence            34578999999987777       56788999999877653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.09  E-value=0.13  Score=33.28  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=29.4

Q ss_pred             CCeEEEEECCCCCEEEEecCC-----CcEEEEECCCC--CccEEeccCC
Q 035276           19 IEVLCSTLKDDGITVFSGGCD-----KQVKTWPLLSG--GQPVIVAMHD   60 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d-----~~v~iwd~~t~--~~~~~~~~h~   60 (69)
                      ..+..+.|+|||++|+..+.+     ..|.+||+.++  ++...+..+.
T Consensus       268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  316 (741)
T 1yr2_A          268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL  316 (741)
T ss_dssp             TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred             eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence            347889999999998776644     38999999775  3144444333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=95.00  E-value=0.044  Score=33.61  Aligned_cols=35  Identities=17%  Similarity=0.095  Sum_probs=28.6

Q ss_pred             EEEEECCCCCEEEEecC--CCcEEEEECCCCCccEEe
Q 035276           22 LCSTLKDDGITVFSGGC--DKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~--d~~v~iwd~~t~~~~~~~   56 (69)
                      ..++|+|||++++.++.  ++.|.++|+.+++.+..+
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI  176 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML  176 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            45799999999988864  689999999997766555

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=94.50  E-value=0.3  Score=27.16  Aligned_cols=54  Identities=15%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE-EeccCCCcEEEEEe
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV-IVAMHDAPIKTIRL   68 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~-~~~~h~~~i~~v~~   68 (69)
                      .+.+...+.+++++++|+.+++...++.|.+||.. +.... ....+...+..+++
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~   64 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTI   64 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEE
Confidence            44555678999999999977776668889999987 44322 12223344555544

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.43  E-value=0.042  Score=37.58  Aligned_cols=36  Identities=8%  Similarity=-0.032  Sum_probs=29.8

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI   55 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~   55 (69)
                      .+.+++..++.+++++-+.|+++|+|++.++.++..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence            345566777889999999999999999999877654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.42  E-value=0.18  Score=27.86  Aligned_cols=32  Identities=9%  Similarity=0.041  Sum_probs=25.7

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCC
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG   51 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~   51 (69)
                      .+..++++++++.+++...++.|.+||.....
T Consensus       151 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          151 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             SCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             CceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            46778999999977777778899999987643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.29  E-value=0.18  Score=32.14  Aligned_cols=40  Identities=10%  Similarity=0.057  Sum_probs=31.7

Q ss_pred             CCCeEEEEECCCCCEEEEecC-----CCcEEEEECCCCCccEEec
Q 035276           18 SIEVLCSTLKDDGITVFSGGC-----DKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~-----d~~v~iwd~~t~~~~~~~~   57 (69)
                      ...+..+.|+|+|+.++.+.+     ++.|.++|.++++....++
T Consensus       502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence            346788999999999877643     6899999999976655554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=94.18  E-value=0.36  Score=28.06  Aligned_cols=31  Identities=10%  Similarity=-0.075  Sum_probs=26.0

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      .+..++|+||++.|+.+..  .|.+||+.+++.
T Consensus       226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             CceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            5688999999999988765  899999988654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=93.57  E-value=0.28  Score=29.76  Aligned_cols=34  Identities=6%  Similarity=-0.099  Sum_probs=27.7

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ..+..++|+++++.+++...++.|++||..++..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~  164 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV  164 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE
Confidence            3578899999999777777789999999987543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.34  E-value=0.28  Score=28.12  Aligned_cols=36  Identities=11%  Similarity=-0.058  Sum_probs=29.6

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc
Q 035276           22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM   58 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~   58 (69)
                      ..+++.++|+++++...++.|..||.+ |+.+..+..
T Consensus       128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~  163 (276)
T 3no2_A          128 RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL  163 (276)
T ss_dssp             SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred             cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC
Confidence            345678999999999999999999987 787766654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=93.20  E-value=0.21  Score=29.08  Aligned_cols=48  Identities=2%  Similarity=-0.212  Sum_probs=31.6

Q ss_pred             eEEEEECCCCCEEEEecCC----------CcEEEEECCCCCccEEeccC-CCcEEEEEe
Q 035276           21 VLCSTLKDDGITVFSGGCD----------KQVKTWPLLSGGQPVIVAMH-DAPIKTIRL   68 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d----------~~v~iwd~~t~~~~~~~~~h-~~~i~~v~~   68 (69)
                      +..++++|+|+.++++..+          +.|.++|..+++....+... ......++|
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~  232 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL  232 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence            3567899999977776654          78999999886554444321 224555555

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=93.09  E-value=0.6  Score=26.66  Aligned_cols=49  Identities=12%  Similarity=0.017  Sum_probs=32.0

Q ss_pred             CCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           18 SIEVLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        18 ~~~v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ........|+|+++ .+++...++.|..|+. +++ ...+..+...+..+.+
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~   93 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAV   93 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeE
Confidence            34456789999998 5577778889999997 433 3334334444555544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=92.91  E-value=0.91  Score=27.48  Aligned_cols=39  Identities=21%  Similarity=0.164  Sum_probs=29.6

Q ss_pred             CeEEEEECCCCCEEEEec-CCCcEEEEECCCCCccEEeccC
Q 035276           20 EVLCSTLKDDGITVFSGG-CDKQVKTWPLLSGGQPVIVAMH   59 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t~~~~~~~~~h   59 (69)
                      .+..++++++|+..++-. .+..|++||+.++. +..+.++
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~  363 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQ  363 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEEC
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCC
Confidence            467899999999777777 78999999987753 4444443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=92.86  E-value=0.065  Score=33.19  Aligned_cols=34  Identities=9%  Similarity=-0.012  Sum_probs=28.0

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCCccEEe
Q 035276           23 CSTLKDDGITVFSGG----------CDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~----------~d~~v~iwd~~t~~~~~~~   56 (69)
                      .++++||+++|+.+.          .++.|.++|..+++....+
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I  165 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADI  165 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEE
Confidence            789999999998876          3678999999997765544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=92.81  E-value=0.43  Score=27.86  Aligned_cols=48  Identities=2%  Similarity=-0.106  Sum_probs=32.8

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc--CCCcEEEEEe
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM--HDAPIKTIRL   68 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~--h~~~i~~v~~   68 (69)
                      ....++++++|...++...++.|.+||.++++ +..+..  +...+..++|
T Consensus       249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          249 ICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             SCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEE
T ss_pred             CCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEE
Confidence            34568999999988888889999999985554 333221  2344566655

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=92.73  E-value=0.26  Score=28.83  Aligned_cols=41  Identities=15%  Similarity=0.158  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEECCCCCEEEEecC-----CCcEEEEECCCCCccEEe
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGC-----DKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~-----d~~v~iwd~~t~~~~~~~   56 (69)
                      .+...+..++++++++.+++-..     +..|.+||+.+++.+..+
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~  109 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVI  109 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEE
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEE
Confidence            34567899999999876555433     578999999887644433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=92.32  E-value=0.8  Score=25.39  Aligned_cols=49  Identities=8%  Similarity=-0.129  Sum_probs=32.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe--ccCCCcEEEEE
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV--AMHDAPIKTIR   67 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~--~~h~~~i~~v~   67 (69)
                      +...+..++++++|+..++...++.|.+||. ++ .+..+  ..+...+.++.
T Consensus       223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g-~~~~~~~~~~~~~~~~i~  273 (299)
T 2z2n_A          223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN-IIEEYPIQIKSAEPHGIC  273 (299)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT-EEEEEECSSSSCCEEEEE
T ss_pred             CCCCceeEEECCCCCEEEeccCCceEEEECC-CC-ceEEEeCCCCCCccceEE
Confidence            3456789999999986666667788999998 43 33322  33444555554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=91.65  E-value=0.31  Score=31.67  Aligned_cols=33  Identities=27%  Similarity=0.336  Sum_probs=27.1

Q ss_pred             EECCCCCEEEEecCCCcEEEEECCCCCccEEec
Q 035276           25 TLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        25 ~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~   57 (69)
                      .+...+..++.++.|+.++.||.++|+.+..+.
T Consensus       481 ~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          481 TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            455567788889999999999999998876654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=91.35  E-value=0.34  Score=28.84  Aligned_cols=29  Identities=10%  Similarity=0.079  Sum_probs=23.3

Q ss_pred             CCCEEEEecCCCcEEEEECCCCCccEEec
Q 035276           29 DGITVFSGGCDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~~   57 (69)
                      ++..|++++.|+.|..||..+|+.+..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~   36 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK   36 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec
Confidence            57788889999999999999887765543

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=91.16  E-value=0.67  Score=30.91  Aligned_cols=33  Identities=15%  Similarity=0.104  Sum_probs=25.7

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEE
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVI   55 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~   55 (69)
                      |.++.+  +..++++-+.|.++|+||+.++.++..
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t  256 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQD  256 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEe
Confidence            433344  477999999999999999999876544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=90.86  E-value=0.26  Score=31.95  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=28.1

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEECCCCCccEEec
Q 035276           23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~   57 (69)
                      ...+..++..++.++.|+.+++||+.+|+.+..+.
T Consensus       481 ~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          481 GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            33455677888889999999999999998876664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=90.51  E-value=0.7  Score=29.17  Aligned_cols=33  Identities=6%  Similarity=0.064  Sum_probs=28.5

Q ss_pred             CCCCeEEEEECCC---CCEEEEecCCCcEEEEECCC
Q 035276           17 KSIEVLCSTLKDD---GITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        17 ~~~~v~~~~~s~~---~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ...+|..+.|.|-   +..|++-..|++|++||+..
T Consensus       123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             CCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            3678999999995   56899999999999999975

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=89.93  E-value=1.1  Score=26.09  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=26.3

Q ss_pred             eEEEEECCCCCEEEEe-cC--CCcEEEEECCCCCccEEe
Q 035276           21 VLCSTLKDDGITVFSG-GC--DKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~-~~--d~~v~iwd~~t~~~~~~~   56 (69)
                      ...+.|++|+ .|+.+ +.  +..|++.|+.+++.+..+
T Consensus        23 ~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i   60 (266)
T 2iwa_A           23 TQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIH   60 (266)
T ss_dssp             EEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEE
T ss_pred             cccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEE
Confidence            5789999986 55544 32  579999999998776654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=89.70  E-value=2.4  Score=27.26  Aligned_cols=43  Identities=9%  Similarity=0.022  Sum_probs=28.3

Q ss_pred             CCCeEEEEECCCCCEEEEe-c---CCCcEEEEECCCCC-ccEEeccCC
Q 035276           18 SIEVLCSTLKDDGITVFSG-G---CDKQVKTWPLLSGG-QPVIVAMHD   60 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~-~---~d~~v~iwd~~t~~-~~~~~~~h~   60 (69)
                      ......+.|+|||++|+.. .   .+..+.++|+.++. ....+..+.
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence            3446789999999987433 2   23589999997753 344444443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=89.60  E-value=1.6  Score=24.12  Aligned_cols=34  Identities=12%  Similarity=0.042  Sum_probs=27.7

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLL   48 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~   48 (69)
                      +.....+.+++++++|+..++...++.|.+||..
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~   49 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS   49 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC
Confidence            3445578899999999977777778899999977

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=89.55  E-value=0.62  Score=26.60  Aligned_cols=30  Identities=10%  Similarity=0.153  Sum_probs=23.4

Q ss_pred             eEEEEECCCCCEEEEecCC------CcEEEEECCCC
Q 035276           21 VLCSTLKDDGITVFSGGCD------KQVKTWPLLSG   50 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d------~~v~iwd~~t~   50 (69)
                      ...++|+||++.|+.+...      +.|.+||+..+
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            4578999999988776554      68999998653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=89.51  E-value=0.11  Score=30.90  Aligned_cols=34  Identities=6%  Similarity=-0.109  Sum_probs=17.9

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           23 CSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      +..+..+++.+++++.|+.+..||.++|+.+..+
T Consensus        42 s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A           42 QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             CCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred             ecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence            3345567777777889999999999888765444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=89.42  E-value=1.8  Score=24.58  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=30.1

Q ss_pred             eEEEEECCCCC-EEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           21 VLCSTLKDDGI-TVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        21 v~~~~~s~~~~-~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .....|+++++ .+++...++.|..||..++.. ..+ .....+.++++
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~   61 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVAL   61 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEE
Confidence            35678999655 456667788999999987543 322 23445666554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=88.53  E-value=1.3  Score=27.97  Aligned_cols=30  Identities=10%  Similarity=0.007  Sum_probs=24.5

Q ss_pred             CeEEEEECCCCCEEEEec-CCCcEEEEECCC
Q 035276           20 EVLCSTLKDDGITVFSGG-CDKQVKTWPLLS   49 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t   49 (69)
                      .+..+.+++||++|+.++ ..+.|.+||+..
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            356789999999997765 578999999964

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=87.27  E-value=0.86  Score=29.79  Aligned_cols=31  Identities=6%  Similarity=-0.126  Sum_probs=23.4

Q ss_pred             CeEEEEEC-CCCCEEEEec-CC----CcEEEEECCCC
Q 035276           20 EVLCSTLK-DDGITVFSGG-CD----KQVKTWPLLSG   50 (69)
Q Consensus        20 ~v~~~~~s-~~~~~l~s~~-~d----~~v~iwd~~t~   50 (69)
                      .+...+|| |||++|+-.. .+    ..|+++|+.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g  211 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP  211 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC
Confidence            46678999 9999886432 22    35999999987

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=86.78  E-value=3.1  Score=24.05  Aligned_cols=29  Identities=17%  Similarity=0.017  Sum_probs=22.6

Q ss_pred             CeEEEEECCCCCEEEEe-cCCCcEEEEECC
Q 035276           20 EVLCSTLKDDGITVFSG-GCDKQVKTWPLL   48 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~-~~d~~v~iwd~~   48 (69)
                      ....++|+||++.++.+ ..++.|.+||+.
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence            34678999999877544 567899999985

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=86.54  E-value=2.7  Score=23.18  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ...+..++++++++..++...++.|..||.. ++.
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            3567889999999977777777889999977 443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=84.30  E-value=1.8  Score=28.23  Aligned_cols=30  Identities=7%  Similarity=-0.077  Sum_probs=24.2

Q ss_pred             eEEEEECCCCCEEEEe-cCCCcEEEEECCCC
Q 035276           21 VLCSTLKDDGITVFSG-GCDKQVKTWPLLSG   50 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~-~~d~~v~iwd~~t~   50 (69)
                      ...+.++|||++++.+ ..+.+|.++|+.+.
T Consensus       279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             ceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence            4568999999988654 47889999999853

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=83.02  E-value=2.9  Score=25.29  Aligned_cols=29  Identities=10%  Similarity=0.126  Sum_probs=22.9

Q ss_pred             eEEEEECCCCCEEEEe-cCCCcEEEEECCC
Q 035276           21 VLCSTLKDDGITVFSG-GCDKQVKTWPLLS   49 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~-~~d~~v~iwd~~t   49 (69)
                      ...++|+||++.|+.+ +..+.|..||+..
T Consensus       223 pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          223 ANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            3568999999988655 4678899999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=82.90  E-value=4.8  Score=22.97  Aligned_cols=47  Identities=4%  Similarity=-0.152  Sum_probs=29.8

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCccE--EeccCCCcEEEEEe
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV--IVAMHDAPIKTIRL   68 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~--~~~~h~~~i~~v~~   68 (69)
                      ...++++++|+..++....+.|.++|.. ++...  .+........+++|
T Consensus       214 P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~  262 (306)
T 2p4o_A          214 IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAF  262 (306)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEE
T ss_pred             CCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEE
Confidence            3457899999876666667889999864 44322  22222344666665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=82.30  E-value=5.3  Score=23.02  Aligned_cols=43  Identities=12%  Similarity=0.007  Sum_probs=31.1

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEE-ecCCCcEEEEECCCCCccEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFS-GGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s-~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .+++-...+..++|+|++..|++ ...++.|...|+. ++.+..+
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i   64 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI   64 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE
Confidence            45565667889999998877754 6667788888887 6655544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=82.24  E-value=2.7  Score=26.58  Aligned_cols=35  Identities=9%  Similarity=0.011  Sum_probs=26.8

Q ss_pred             EEEEECCCCCEEEEec-------------------CCCcEEEEECCCCCccEEe
Q 035276           22 LCSTLKDDGITVFSGG-------------------CDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~-------------------~d~~v~iwd~~t~~~~~~~   56 (69)
                      .++-|+|+++.+++..                   .+.+|.+||+.+++....+
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI  244 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL  244 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence            3577899999998885                   3689999999886544444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=81.43  E-value=2.6  Score=24.64  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=24.6

Q ss_pred             EEEEECCCCCEEEEecCCC--cEEEEECCCCCccEEe
Q 035276           22 LCSTLKDDGITVFSGGCDK--QVKTWPLLSGGQPVIV   56 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~--~v~iwd~~t~~~~~~~   56 (69)
                      ..+.|+ ++....+.+.++  .|+++|+++++.+..+
T Consensus        46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~   81 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI   81 (262)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE
T ss_pred             ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE
Confidence            568888 665555666655  8999999998876554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=80.17  E-value=2.7  Score=27.44  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=25.2

Q ss_pred             CCCeEEEEECCCCCEEE-EecCCCcEEEEECCC
Q 035276           18 SIEVLCSTLKDDGITVF-SGGCDKQVKTWPLLS   49 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~-s~~~d~~v~iwd~~t   49 (69)
                      ....+.++|+++| .++ +.-.|.+|.+||+.+
T Consensus       330 G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             CCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            4457899999999 665 456899999999976

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=80.13  E-value=1.6  Score=25.38  Aligned_cols=31  Identities=10%  Similarity=-0.058  Sum_probs=23.7

Q ss_pred             ECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           26 LKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        26 ~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      +++|++.++.+..++.|.+.|..+.+.+..+
T Consensus       112 lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A          112 LATDGKILYGSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             EEECSSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             EEECCCEEEEECCCCeEEEEECCCCcEEEEE
Confidence            5567887877777889999999887655544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=80.12  E-value=3.2  Score=24.38  Aligned_cols=34  Identities=15%  Similarity=0.056  Sum_probs=25.3

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           22 LCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        22 ~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ..+.|+ ++....+.+.++.|+++|+++++.+..+
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~   91 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME   91 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE
Confidence            567776 3455567778888999999998876554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=80.09  E-value=1.5  Score=25.17  Aligned_cols=30  Identities=10%  Similarity=0.017  Sum_probs=24.9

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSG   50 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~   50 (69)
                      ...++|+++++.++++..++.|..||..++
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~   50 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNS   50 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCC
Confidence            456789999987888888999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.57
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.56
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.53
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.4
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.39
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.39
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.37
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.35
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.35
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.33
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.3
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.26
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.25
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.21
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.18
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.16
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.13
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.11
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.1
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.09
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.03
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.03
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.8
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.78
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.64
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.63
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.61
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.59
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.57
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.46
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.44
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.4
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.4
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.31
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.3
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.29
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.26
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.17
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.16
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.45
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.4
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.95
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	96.77
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.81
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	94.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	93.29
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	92.7
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	91.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	90.81
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	90.34
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	88.62
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	88.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	87.39
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	87.34
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	87.21
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	84.23
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.65
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	83.39
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	82.82
d2nt0a1	143	Glucosylceramidase {Human (Homo sapiens) [TaxId: 9	80.69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=8.8e-15  Score=81.24  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|.++|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++.|+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~   68 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD   68 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeee
Confidence            356899999999999999999999999999999999998889999999999999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=7.2e-15  Score=82.84  Aligned_cols=59  Identities=8%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+.+|.++|.+++|+|++++|++|+.|++|++||+.+++.+..+..|..+|.+++|+
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~  106 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA  106 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEEC
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEee
Confidence            34566899999999999999999999999999999999988888889999999999885

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.53  E-value=2.4e-14  Score=80.49  Aligned_cols=59  Identities=17%  Similarity=0.330  Sum_probs=52.5

Q ss_pred             hccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-ccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-AMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-~~h~~~i~~v~~s   69 (69)
                      .+.+.+|..+|.+++|+||+++|++|+.|++|++||+++++++..+ ..|...|.+++|+
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~   64 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT   64 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEee
Confidence            3567799999999999999999999999999999999998777666 4789999999885

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=3.3e-13  Score=75.30  Aligned_cols=57  Identities=5%  Similarity=-0.017  Sum_probs=48.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE---EeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV---IVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~---~~~~h~~~i~~v~~s   69 (69)
                      -..+|...|.+++|+|++++|++++.|++|++||+.++....   ...+|..+|.+++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~   65 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI   65 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEe
Confidence            456899999999999999999999999999999998755432   234699999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=2.8e-13  Score=79.28  Aligned_cols=51  Identities=24%  Similarity=0.356  Sum_probs=46.6

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEE
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIK   64 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~   64 (69)
                      ..+|...|.+++|+||+++|++++.|++|++||+++++++..+.+|...|.
T Consensus       285 ~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         285 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             eecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            347999999999999999999999999999999999988899999987664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.2e-13  Score=75.60  Aligned_cols=56  Identities=18%  Similarity=0.233  Sum_probs=49.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|..+|.+ +++++|++|++|+.|++|++||+.+++++..+.+|...|.++.|+
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~   66 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR   66 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeC
Confidence            45689999876 467789999999999999999999998888999999999998874

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.1e-12  Score=72.64  Aligned_cols=57  Identities=12%  Similarity=0.133  Sum_probs=52.6

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       242 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s  298 (317)
T d1vyhc1         242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH  298 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            345788999999999999999999999999999999988889999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.35  E-value=2.7e-12  Score=73.57  Aligned_cols=57  Identities=16%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc--EEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP--VIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~--~~~~~h~~~i~~v~~s   69 (69)
                      ...+|..+|.+++|+|+|++|++|+.|++|++||+.++...  ..+..|..+|.+++|+
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  111 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD  111 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEEC
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccc
Confidence            34579999999999999999999999999999999886654  4577899999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=5.1e-13  Score=75.08  Aligned_cols=56  Identities=14%  Similarity=0.204  Sum_probs=47.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .+.+|...|.++ +++++++|++|+.|++|++||+.+++++..+.+|..+|.+++|+
T Consensus         7 tL~GH~~~vitc-~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s   62 (355)
T d1nexb2           7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA   62 (355)
T ss_dssp             EEECCSSSCEEE-EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEE
T ss_pred             EECCcCCCcEEE-EEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEc
Confidence            456898887542 45578999999999999999999988888999999999999984

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.2e-12  Score=69.68  Aligned_cols=53  Identities=21%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|...|.+++|  |+++|++|+.|++|++||+.+++++..+.+|...|.+++|+
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~   64 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD   64 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC
T ss_pred             CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc
Confidence            456777887655  79999999999999999999988889999999999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.30  E-value=1.4e-11  Score=69.14  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=50.7

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+..++..++|+|++++|++|+.|+.|++||+.+++++..+.+|..+|.+++|+
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s  321 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT  321 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe
Confidence            4567779999999999999999999999999999988889999999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=1.3e-11  Score=72.11  Aligned_cols=57  Identities=9%  Similarity=0.032  Sum_probs=47.5

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCc---EEEEECCCCCccEEe-------------ccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQ---VKTWPLLSGGQPVIV-------------AMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~---v~iwd~~t~~~~~~~-------------~~h~~~i~~v~~s   69 (69)
                      .+.+|..+|.+++|+||+++|++|+.|++   |++||++++.++..+             .+|...|.+++|+
T Consensus       226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs  298 (393)
T d1sq9a_         226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  298 (393)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC
Confidence            34578999999999999999999998874   999999998766554             3799999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=1.6e-11  Score=70.50  Aligned_cols=54  Identities=19%  Similarity=0.269  Sum_probs=49.8

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.++++
T Consensus       305 ~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~  358 (388)
T d1erja_         305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  358 (388)
T ss_dssp             ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             ccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence            357888999999999999999999999999999999888999999999998875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=8.8e-12  Score=72.34  Aligned_cols=51  Identities=10%  Similarity=0.140  Sum_probs=45.3

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCC--ccEEeccCCCcEEEEEeC
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG--QPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~--~~~~~~~h~~~i~~v~~s   69 (69)
                      .||.+++|+||+++|++++.|+.|++||+.+++  ++..+.+|..+|.+++|+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fs   60 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA   60 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEEC
Confidence            679999999999999999999999999998754  456678999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.8e-11  Score=68.22  Aligned_cols=53  Identities=26%  Similarity=0.409  Sum_probs=44.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc-----EEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP-----VIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~-----~~~~~h~~~i~~v~~s   69 (69)
                      .|..+|.+++|+|+|++|++|+ |+.|++||+.++...     ....+|...|.+++|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s  106 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL  106 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc
Confidence            6899999999999999999987 889999999764332     2235789999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=9.7e-11  Score=65.04  Aligned_cols=54  Identities=15%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEecc-CCCcEEEEEe
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAM-HDAPIKTIRL   68 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~-h~~~i~~v~~   68 (69)
                      ..|...+.+++|+|++++|++|+.||.|++||+++++++..+.. |...+.++.+
T Consensus       248 ~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~  302 (342)
T d1yfqa_         248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC  302 (342)
T ss_dssp             CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEE
T ss_pred             CcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEe
Confidence            45677889999999999999999999999999999877777653 4455555543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.13  E-value=1.1e-10  Score=67.59  Aligned_cols=56  Identities=13%  Similarity=0.003  Sum_probs=50.9

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...|...|.+++|+|++++|++++.|+.|++||+.++.++..+..|..+|.++.|+
T Consensus       197 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs  252 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI  252 (371)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE
T ss_pred             ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeec
Confidence            35678889999999999999999999999999999988888889999999999884

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.11  E-value=2.1e-10  Score=65.58  Aligned_cols=59  Identities=12%  Similarity=0.061  Sum_probs=51.5

Q ss_pred             hccCCCCCCCeEEEEECCCCCE-EEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           11 TNQNPNKSIEVLCSTLKDDGIT-VFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        11 ~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+.+|...|.+++|+|++++ +++|+.|+.|++||+++++....+..|..+|.++.|+
T Consensus       139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~  198 (311)
T d1nr0a1         139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN  198 (311)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC
T ss_pred             cccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccC
Confidence            3455678899999999999885 7889999999999999987778888999999999885

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3e-10  Score=64.83  Aligned_cols=56  Identities=16%  Similarity=0.112  Sum_probs=48.6

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|..+|.+++|+|++++|++++.|+.|++||+.+++++..+ .|...|.+++|+
T Consensus       260 ~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s  315 (337)
T d1gxra_         260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDIS  315 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC
T ss_pred             cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEe
Confidence            34568889999999999999999999999999999997776655 588899999885

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=3.2e-10  Score=64.95  Aligned_cols=56  Identities=16%  Similarity=0.371  Sum_probs=49.2

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...|...|.+++|+|++++|++|+.|+.|++||...++.+..+.+|...|.++.|+
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~  172 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF  172 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccc
Confidence            34678889999999999999999999999999999987778888999999988774

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=9e-10  Score=61.19  Aligned_cols=56  Identities=11%  Similarity=0.057  Sum_probs=47.6

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE-EeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV-IVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~-~~~~h~~~i~~v~~s   69 (69)
                      ...+..++.+++|+|++.+|++++.|+.|++||+.++.... .+..|..+|.+++|+
T Consensus       158 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~  214 (287)
T d1pgua2         158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK  214 (287)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred             eeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeec
Confidence            34577889999999999999999999999999998865543 357899999999874

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=1.2e-09  Score=60.64  Aligned_cols=57  Identities=9%  Similarity=0.053  Sum_probs=47.5

Q ss_pred             cCCCCCCCeEEEEECCC----------CCEEEEecCCCcEEEEECCCC-CccEEeccCCCcEEEEEeC
Q 035276           13 QNPNKSIEVLCSTLKDD----------GITVFSGGCDKQVKTWPLLSG-GQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~----------~~~l~s~~~d~~v~iwd~~t~-~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....|..+|.+++|+|+          +.++++|+.|++|++||++.+ +.+..+.+|...|.++.|+
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~  267 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE  267 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC
Confidence            45678999999999874          468999999999999999774 4456678899999999884

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=1.1e-09  Score=62.58  Aligned_cols=54  Identities=17%  Similarity=0.159  Sum_probs=45.1

Q ss_pred             CCCCCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           14 NPNKSIEVLCSTLKDD-GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      ...|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+.+|..++..+.
T Consensus       201 ~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~  255 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI  255 (325)
T ss_dssp             SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred             ccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccce
Confidence            3467888999999997 57889999999999999999888888888887765433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.91  E-value=6.8e-09  Score=57.73  Aligned_cols=56  Identities=14%  Similarity=0.274  Sum_probs=43.0

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccE--Eecc-CCCcEEEEEe
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPV--IVAM-HDAPIKTIRL   68 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~--~~~~-h~~~i~~v~~   68 (69)
                      ....|..+|.+++|+|++++|++++.|+.|++||++++....  .... +...+.++.|
T Consensus       219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  277 (299)
T d1nr0a2         219 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW  277 (299)
T ss_dssp             CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred             cccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE
Confidence            445688999999999999999999999999999998765432  2223 4456666654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.86  E-value=6.4e-09  Score=58.57  Aligned_cols=53  Identities=8%  Similarity=0.075  Sum_probs=44.6

Q ss_pred             CCCCCeEEEEECCCCCEEEEecCCC--cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           16 NKSIEVLCSTLKDDGITVFSGGCDK--QVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        16 ~~~~~v~~~~~s~~~~~l~s~~~d~--~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      +|...|.+++|+|||++|++++.+.  .|++||+.++ ....+..|...|.+++|+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-~~~~~~~~~~~v~~~~~s   94 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-KAEKFEENLGNVFAMGVD   94 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-CEEECCCCCCSEEEEEEC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-cEEEeeCCCceEEeeeec
Confidence            5888999999999999998776553  7999999885 556677899999999886

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.80  E-value=1.2e-08  Score=57.42  Aligned_cols=58  Identities=16%  Similarity=0.123  Sum_probs=50.0

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .....|...+..++|+||+++|++++.++.+++|++.++.....+..|...+.+++|+
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhc
Confidence            3456788899999999999999999999999999999987777777788888777774

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.7e-08  Score=55.08  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=42.8

Q ss_pred             CCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe-----ccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV-----AMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~-----~~h~~~i~~v~~s   69 (69)
                      ..|...+.++.++  ++++++++.|++|++||+++++.+..+     .+|...|.+++|+
T Consensus       257 ~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s  314 (342)
T d2ovrb2         257 NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS  314 (342)
T ss_dssp             TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred             ceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEEC
Confidence            3466677777775  578999999999999999998877665     3678889999885

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=9.8e-08  Score=53.01  Aligned_cols=56  Identities=16%  Similarity=0.264  Sum_probs=49.8

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+...+.++.|+|++..+++++.|+.|++||+.++..+..+.+|...|.++.|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~  252 (355)
T d1nexb2         197 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS  252 (355)
T ss_dssp             ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC
T ss_pred             eeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc
Confidence            34567778899999999999999999999999999988888899999999998874

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.63  E-value=1.5e-08  Score=59.60  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=31.2

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCcc
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQP   53 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~   53 (69)
                      ..+..++|+|||++|++++.|+++++||+.+++..
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~   96 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT   96 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee
Confidence            35789999999999999999999999999987653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.61  E-value=1.2e-07  Score=53.92  Aligned_cols=52  Identities=10%  Similarity=0.040  Sum_probs=42.4

Q ss_pred             CCCCeEEEEECCCCCE--EEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           17 KSIEVLCSTLKDDGIT--VFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~--l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      +...+..++|+|||+.  +++++.|++|++||+.+++.+..+..+....+.+++
T Consensus       316 ~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         316 LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence            4566788999999985  357889999999999999988888877766666653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.59  E-value=2.8e-08  Score=55.52  Aligned_cols=43  Identities=9%  Similarity=0.181  Sum_probs=36.9

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHD   60 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~   60 (69)
                      ...+.+++|+|||++|++++.|+.|++||+++++.+..+....
T Consensus       291 ~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         291 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            3467899999999999999999999999999988877775443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=3.2e-07  Score=52.04  Aligned_cols=55  Identities=16%  Similarity=-0.021  Sum_probs=47.7

Q ss_pred             CCCCCCeEEEEECCCCCEEEEec--CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGG--CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~--~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..|.++|.+++|+++++++++++  .++.+++|+..+++++..+.+|...|.+++|+
T Consensus       112 ~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  168 (325)
T d1pgua1         112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK  168 (325)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred             ccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccccccc
Confidence            35788999999999999987665  46789999999988888899999999999885

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.46  E-value=1.6e-07  Score=52.12  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=35.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~   57 (69)
                      +...+.+++|+|||++|++++.|++|++||+++++.+..+.
T Consensus       278 ~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            34567899999999999999999999999999988776653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.44  E-value=6.7e-08  Score=57.40  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=30.5

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEECCCCCc
Q 035276           19 IEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQ   52 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~   52 (69)
                      ..+..++|+|||+++++++.|+++++||+.+++.
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~   95 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP   95 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc
Confidence            3588999999999999999999999999988654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.40  E-value=9e-08  Score=56.20  Aligned_cols=56  Identities=7%  Similarity=-0.034  Sum_probs=43.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEE-------ecCCCcEEEEECCCCCccEEe---------ccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFS-------GGCDKQVKTWPLLSGGQPVIV---------AMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s-------~~~d~~v~iwd~~t~~~~~~~---------~~h~~~i~~v~~s   69 (69)
                      ..+|...+..++|+||+++|+.       +..|++|++||+.++++...+         ..|...+..++||
T Consensus       299 l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fS  370 (426)
T d1hzua2         299 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN  370 (426)
T ss_dssp             EECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEEC
T ss_pred             EecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEEC
Confidence            4468888999999999999984       556889999999998765443         2455667777775

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.40  E-value=5e-07  Score=50.87  Aligned_cols=49  Identities=16%  Similarity=0.013  Sum_probs=38.1

Q ss_pred             CCeEEEEECCCCCE--EEEecCCCcEEEEECCCCCccEEeccCCCcEEEEE
Q 035276           19 IEVLCSTLKDDGIT--VFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIR   67 (69)
Q Consensus        19 ~~v~~~~~s~~~~~--l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~   67 (69)
                      ..+..++|+|||+.  ++++..|++|++||+++++.+..+.++......+.
T Consensus       300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~  350 (355)
T d2bbkh_         300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT  350 (355)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred             CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEE
Confidence            34668999999973  46677899999999999988888876665555443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.31  E-value=1.1e-06  Score=48.18  Aligned_cols=40  Identities=13%  Similarity=0.029  Sum_probs=33.0

Q ss_pred             CCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEec
Q 035276           18 SIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~   57 (69)
                      ...+..++|+|||++| ++++.|+.|++||+++++.+..+.
T Consensus       243 ~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         243 GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            3457899999999987 577789999999999987766664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.30  E-value=1.7e-06  Score=47.36  Aligned_cols=49  Identities=10%  Similarity=0.135  Sum_probs=37.7

Q ss_pred             CCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           19 IEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ..+..++|+|||++| +++..++.|++||+.+++.+..+..+.. +..+.|
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~   81 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAV   81 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccc
Confidence            446789999999988 5667889999999999877777766554 344544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.29  E-value=3.1e-07  Score=51.17  Aligned_cols=46  Identities=9%  Similarity=-0.080  Sum_probs=37.0

Q ss_pred             EEECCCCCEEEEecCCCcEEEEECCCCCccEEec-cCCCcEEEEEeC
Q 035276           24 STLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTIRLL   69 (69)
Q Consensus        24 ~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v~~s   69 (69)
                      ++|++++++|++++.|++|.+||+.+++.+.++. .|...+..++|+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~s   48 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA   48 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEEC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEEC
Confidence            4689999999999999999999999987766664 345556677664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.4e-06  Score=45.43  Aligned_cols=43  Identities=21%  Similarity=0.396  Sum_probs=35.2

Q ss_pred             ccCCCCCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           12 NQNPNKSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        12 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ..+.+|..+|.+++|  ++++|++++.|+.+++|++..+......
T Consensus        49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~   91 (293)
T d1p22a2          49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL   91 (293)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             EEEecCCCCEeeeec--ccceeecccccccccccccccccccccc
Confidence            345679999999887  5789999999999999999887654444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.3e-06  Score=48.62  Aligned_cols=41  Identities=12%  Similarity=0.088  Sum_probs=31.9

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEe-cCCCcEEEEECCCCCcc
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSG-GCDKQVKTWPLLSGGQP   53 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~v~iwd~~t~~~~   53 (69)
                      +...+.+.+..++|+|||++|+++ ..|+.|++|++.+....
T Consensus        31 ~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~   72 (333)
T d1ri6a_          31 QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA   72 (333)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence            334567788999999999999554 46899999999875443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.16  E-value=3.7e-06  Score=46.49  Aligned_cols=43  Identities=7%  Similarity=0.050  Sum_probs=33.9

Q ss_pred             CCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCCccEEeccC
Q 035276           17 KSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLSGGQPVIVAMH   59 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t~~~~~~~~~h   59 (69)
                      +...+..++|+|||+++ ++++.++.|.+||+.+++.+..+..+
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            34456789999999988 46678999999999998876665444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.96  E-value=7.5e-06  Score=48.19  Aligned_cols=55  Identities=7%  Similarity=-0.062  Sum_probs=43.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEecC---------CCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           14 NPNKSIEVLCSTLKDDGITVFSGGC---------DKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        14 ~~~~~~~v~~~~~s~~~~~l~s~~~---------d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ...+...|.++.|||||++|+.++.         ++.+.+||+.++ .+..+..|...+..+.||
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-~~~~l~~~~~~~~~~~~S  120 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-QLITEERIPNNTQWVTWS  120 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCCCTTEEEEEEC
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-cccccccCCccccccccc
Confidence            3455677899999999999987743         467889999985 456677788888888886

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.91  E-value=1.4e-05  Score=47.24  Aligned_cols=44  Identities=9%  Similarity=0.018  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEECCCCCEEEEec-----CCCcEEEEECCCCCccEEecc
Q 035276           15 PNKSIEVLCSTLKDDGITVFSGG-----CDKQVKTWPLLSGGQPVIVAM   58 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~s~~-----~d~~v~iwd~~t~~~~~~~~~   58 (69)
                      ..|..++..++|+|||++|+.+.     .++.|++||..+++....+.+
T Consensus       364 ~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         364 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  412 (432)
T ss_dssp             CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence            35677899999999999886553     467899999999766555544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.60  E-value=0.00011  Score=41.43  Aligned_cols=50  Identities=14%  Similarity=-0.128  Sum_probs=37.8

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEe-----cCCCcEEEEECCCCCccEEeccCCCc
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSG-----GCDKQVKTWPLLSGGQPVIVAMHDAP   62 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~-----~~d~~v~iwd~~t~~~~~~~~~h~~~   62 (69)
                      ....+..++.+++++|||+.++..     ..+..+.+||..+++.+..+..+..+
T Consensus        15 a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~   69 (373)
T d2madh_          15 AAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP   69 (373)
T ss_pred             hcccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc
Confidence            344678889999999999998764     23457999999998877777655443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.60  E-value=6.1e-05  Score=42.90  Aligned_cols=41  Identities=10%  Similarity=0.059  Sum_probs=32.3

Q ss_pred             CCeEEEEECCCCC-EE-EEecCCCcEEEEECCCCCccEEeccC
Q 035276           19 IEVLCSTLKDDGI-TV-FSGGCDKQVKTWPLLSGGQPVIVAMH   59 (69)
Q Consensus        19 ~~v~~~~~s~~~~-~l-~s~~~d~~v~iwd~~t~~~~~~~~~h   59 (69)
                      ..+..++|+|||+ +| +++..|+.|++||+.+++.+..+...
T Consensus       314 ~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         314 HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            4566789999997 34 56678899999999998887777533

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.45  E-value=5.2e-05  Score=42.34  Aligned_cols=35  Identities=11%  Similarity=0.089  Sum_probs=27.6

Q ss_pred             EEEECCCCCEEEEec----------CCCcEEEEECCCCCccEEec
Q 035276           23 CSTLKDDGITVFSGG----------CDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~----------~d~~v~iwd~~t~~~~~~~~   57 (69)
                      .++|+|||++|+..+          .|+.|++||+.+++....+.
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~   95 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE   95 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEe
Confidence            579999999887643          47899999999987655543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00017  Score=39.66  Aligned_cols=33  Identities=9%  Similarity=0.187  Sum_probs=24.8

Q ss_pred             CCeEEEEECCCCCEEEEec-CCCcEEEEEC--CCCC
Q 035276           19 IEVLCSTLKDDGITVFSGG-CDKQVKTWPL--LSGG   51 (69)
Q Consensus        19 ~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~--~t~~   51 (69)
                      ..+..++|+|||++|++++ .++.|++|++  ++|+
T Consensus       276 ~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         276 TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            3456789999999987765 4688999954  5653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.06  E-value=0.00061  Score=39.82  Aligned_cols=44  Identities=5%  Similarity=-0.074  Sum_probs=34.4

Q ss_pred             CCCCCCeEEEEECCCCCEEE---EecCCCcEEEEECCCCCccEEecc
Q 035276           15 PNKSIEVLCSTLKDDGITVF---SGGCDKQVKTWPLLSGGQPVIVAM   58 (69)
Q Consensus        15 ~~~~~~v~~~~~s~~~~~l~---s~~~d~~v~iwd~~t~~~~~~~~~   58 (69)
                      ..|...+.+++|||||++++   ++.....+.+|+..+++++..+..
T Consensus       412 ~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence            35777889999999999876   344455789999999888777754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0028  Score=34.06  Aligned_cols=52  Identities=10%  Similarity=-0.004  Sum_probs=36.7

Q ss_pred             CCCCeEEEEECCCCCEEEEec---CCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGG---CDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~---~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      .........|+|||+.|+-.+   ....+.++++.. +....+......+...+||
T Consensus       212 ~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg-~~~~~lt~~~g~~~~p~WS  266 (269)
T d2hqsa1         212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWS  266 (269)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEECCCSSSEEEEEEEC
T ss_pred             cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC-CCEEEEeCCCCcEEeEEeC
Confidence            344556778999999986433   345788999876 4455666666777778886

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.77  E-value=0.0009  Score=37.89  Aligned_cols=35  Identities=0%  Similarity=-0.192  Sum_probs=28.1

Q ss_pred             EEEECCCCCEEEEec-CCCcEEEEECCCCCccEEec
Q 035276           23 CSTLKDDGITVFSGG-CDKQVKTWPLLSGGQPVIVA   57 (69)
Q Consensus        23 ~~~~s~~~~~l~s~~-~d~~v~iwd~~t~~~~~~~~   57 (69)
                      .++|+|||++|+.+. .++.+.+||+.+++....+.
T Consensus       128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~  163 (368)
T d1mdah_         128 IIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK  163 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee
Confidence            578999999998775 57899999999876555443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.018  Score=30.70  Aligned_cols=52  Identities=12%  Similarity=0.009  Sum_probs=31.2

Q ss_pred             CCCCeEEEEECCCCCEEEEecC-CC--cEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGC-DK--QVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~-d~--~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ....+...+|||||+.|+-... ++  .+.+.+...+. ...+..+........||
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s   91 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFS   91 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEECCSSCEEEEEEC
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-eeEEeeeecccccceec
Confidence            4555778899999999975433 22  45556665543 33344455555555553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.81  E-value=0.038  Score=30.50  Aligned_cols=47  Identities=9%  Similarity=-0.006  Sum_probs=34.8

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+..++++|||+.+++...+++|..||-.. + ...+......+.+++|
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~   75 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAF   75 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEE
Confidence            477899999999999999999888887443 3 3444455566777765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=94.53  E-value=0.12  Score=28.91  Aligned_cols=48  Identities=4%  Similarity=0.012  Sum_probs=36.2

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .-.+++.++|+..++....+.|.+||...+.....+......+.+++|
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af  275 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEE
Confidence            456899999997777777889999998776555556555566677776

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.29  E-value=0.039  Score=32.97  Aligned_cols=29  Identities=14%  Similarity=0.021  Sum_probs=24.2

Q ss_pred             eEEEEECCCCCEE-EEecCCCcEEEEECCC
Q 035276           21 VLCSTLKDDGITV-FSGGCDKQVKTWPLLS   49 (69)
Q Consensus        21 v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t   49 (69)
                      ...+.++|||+++ +++..+.++.+||+++
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            4678999999987 4567899999999854

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.70  E-value=0.08  Score=27.98  Aligned_cols=39  Identities=8%  Similarity=-0.091  Sum_probs=25.4

Q ss_pred             cCCCCCCCeEEEEECCCCCEEEEec----CCC--cEEEEECCCCC
Q 035276           13 QNPNKSIEVLCSTLKDDGITVFSGG----CDK--QVKTWPLLSGG   51 (69)
Q Consensus        13 ~~~~~~~~v~~~~~s~~~~~l~s~~----~d~--~v~iwd~~t~~   51 (69)
                      ++..+.+.....+|||||++|+-..    .+.  .|.++++.+++
T Consensus        35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2          35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            3444556678889999999987432    222  36667766653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.33  E-value=0.44  Score=26.19  Aligned_cols=50  Identities=8%  Similarity=-0.038  Sum_probs=36.3

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+.+-.+++.++|+..++....+.|.+||- .|+.+..+.--...+++++|
T Consensus       198 ~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~F  247 (295)
T d2ghsa1         198 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF  247 (295)
T ss_dssp             SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred             cccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEE
Confidence            344667899999997777667788999994 56776666544456777776

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=91.64  E-value=0.6  Score=26.30  Aligned_cols=29  Identities=10%  Similarity=0.113  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCEEEEec-CCCcEEEEECCC
Q 035276           21 VLCSTLKDDGITVFSGG-CDKQVKTWPLLS   49 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t   49 (69)
                      +..+.|+|||++++++. ...+|.+|+...
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~  176 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLA  176 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccC
Confidence            57899999999887765 345788887654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.81  E-value=0.7  Score=25.53  Aligned_cols=49  Identities=8%  Similarity=0.005  Sum_probs=31.8

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      .+..++|.++|+..++-..++.|..||..++.....+.........+++
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~   89 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKI   89 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEE
Confidence            3457899999997777778888999987764433333333333444443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=90.34  E-value=0.14  Score=30.55  Aligned_cols=49  Identities=18%  Similarity=0.129  Sum_probs=32.8

Q ss_pred             eEEEEECCCCCEEEE-ecCCCcEEEEECCCCCccEEec-cCCCcEEEEEeC
Q 035276           21 VLCSTLKDDGITVFS-GGCDKQVKTWPLLSGGQPVIVA-MHDAPIKTIRLL   69 (69)
Q Consensus        21 v~~~~~s~~~~~l~s-~~~d~~v~iwd~~t~~~~~~~~-~h~~~i~~v~~s   69 (69)
                      +....++|||++|+. ...+..|.++|+.+.++...+. .+...+..++|+
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~s  124 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQ  124 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEEC
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEe
Confidence            334557899999854 5678899999999976544332 244556655553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=88.62  E-value=1.2  Score=25.08  Aligned_cols=35  Identities=3%  Similarity=-0.000  Sum_probs=27.4

Q ss_pred             CCCCeEEEEECCCCCEEEEec-CCCcEEEEECCCCC
Q 035276           17 KSIEVLCSTLKDDGITVFSGG-CDKQVKTWPLLSGG   51 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~-~d~~v~iwd~~t~~   51 (69)
                      .......++|+|++++++... .+++|.+||+..+.
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            345678899999999986555 67899999987643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.41  E-value=0.98  Score=24.90  Aligned_cols=47  Identities=9%  Similarity=-0.105  Sum_probs=32.7

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEECCCCCccEEec------cCCCcEEEEEe
Q 035276           21 VLCSTLKDDGITVFSGGCDKQVKTWPLLSGGQPVIVA------MHDAPIKTIRL   68 (69)
Q Consensus        21 v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~~~~~~~------~h~~~i~~v~~   68 (69)
                      .-.+++.++|+..++....+.|.++|- .|+.+..+.      ++...+.+++|
T Consensus       230 PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~  282 (319)
T d2dg1a1         230 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF  282 (319)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred             eeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEE
Confidence            456899999997787788899999994 566655442      23334555554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.39  E-value=0.76  Score=23.94  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=28.3

Q ss_pred             EECCC--CCEEEEecCCCcEEEEECCCCCccEEeccCCCcEEEEEeC
Q 035276           25 TLKDD--GITVFSGGCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRLL   69 (69)
Q Consensus        25 ~~s~~--~~~l~s~~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~s   69 (69)
                      ..+||  |++++-.. ++.|.+.|+.+++ ...+..+...+...+||
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~-~~~Lt~~~~~~~~p~~S   49 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS-TRKIVSNLGVINNARFF   49 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC-EEEEECSSSEEEEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC-EEEEecCCCcccCEEEC
Confidence            35788  88886543 3458888988754 45565566666666665

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=87.34  E-value=0.48  Score=25.81  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=26.4

Q ss_pred             CCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 035276           17 KSIEVLCSTLKDDGITVFSGGCDKQVKTWPLLS   49 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t   49 (69)
                      ....+..++|++||+.+++...++.+..++...
T Consensus        66 ~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          66 VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            345678899999999888887888888887654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.21  E-value=0.85  Score=26.76  Aligned_cols=34  Identities=9%  Similarity=-0.083  Sum_probs=27.8

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCC
Q 035276           18 SIEVLCSTLKDDGITVFSGGCDKQVKTWPLLSGG   51 (69)
Q Consensus        18 ~~~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~~   51 (69)
                      -...+.++|.||++.+++--.+|.|++++..++.
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence            3456899999999999887778899999877654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.23  E-value=1.8  Score=22.87  Aligned_cols=31  Identities=10%  Similarity=0.038  Sum_probs=25.1

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 035276           20 EVLCSTLKDDGITVFSGGCDKQVKTWPLLSG   50 (69)
Q Consensus        20 ~v~~~~~s~~~~~l~s~~~d~~v~iwd~~t~   50 (69)
                      ....++++++++.+++...+..|..+|....
T Consensus       141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_         141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             SCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             CcceeeecCCCCEeeeccccccccccccccc
Confidence            3467899999998888888888999997753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.65  E-value=0.86  Score=27.46  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=23.9

Q ss_pred             CCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           29 DGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        29 ~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      .+..|+.+..|+.++.+|.++|+.+.++
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            5677878899999999999999987654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.39  E-value=0.9  Score=27.44  Aligned_cols=29  Identities=28%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             CCCCEEEEecCCCcEEEEECCCCCccEEe
Q 035276           28 DDGITVFSGGCDKQVKTWPLLSGGQPVIV   56 (69)
Q Consensus        28 ~~~~~l~s~~~d~~v~iwd~~t~~~~~~~   56 (69)
                      ..+..|+.|..|+.++.+|.++|+.+-.+
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~  523 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence            35678888999999999999999987554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=82.82  E-value=1.8  Score=23.83  Aligned_cols=33  Identities=9%  Similarity=-0.052  Sum_probs=25.5

Q ss_pred             CCCCeEEEEECCCCCEE-EEecCCCcEEEEECCC
Q 035276           17 KSIEVLCSTLKDDGITV-FSGGCDKQVKTWPLLS   49 (69)
Q Consensus        17 ~~~~v~~~~~s~~~~~l-~s~~~d~~v~iwd~~t   49 (69)
                      +...+.+++|.||++.| ++.+.++.|...|+..
T Consensus       266 p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         266 PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            34567889999999865 6667788888888865

>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Glycosyl hydrolase domain
superfamily: Glycosyl hydrolase domain
family: Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
domain: Glucosylceramidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=2.2  Score=21.42  Aligned_cols=49  Identities=18%  Similarity=0.036  Sum_probs=28.0

Q ss_pred             CCCeEEEEE-CCCCCEEEEe----cCCCcEEEEECCCCCccEEeccCCCcEEEEEe
Q 035276           18 SIEVLCSTL-KDDGITVFSG----GCDKQVKTWPLLSGGQPVIVAMHDAPIKTIRL   68 (69)
Q Consensus        18 ~~~v~~~~~-s~~~~~l~s~----~~d~~v~iwd~~t~~~~~~~~~h~~~i~~v~~   68 (69)
                      ...+..++| +|||+.++..    ..+..+.++|...+..-..+++|  .|..+.|
T Consensus        87 ~~~L~~vAF~nPDgs~vlVv~N~s~~~~~~~i~~~~~~~~~~~lpa~--Si~T~vw  140 (143)
T d2nt0a1          87 KNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGY--SIHTYLW  140 (143)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEECSSSCEEEEEEETTTEEEEEEECTT--EEEEEEE
T ss_pred             cCcceEEEEECCCCCEEEEEEeCCCCCeEEEEEeCCCCEEEEEeCCC--EEEEEEE
Confidence            455777888 8899876542    33446666665443333445443  3455555