Citrus Sinensis ID: 035304

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLFI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHcccEEEEEcccccEEEEEccEEHHHHHHHHHHHHHHHHHHHHHHHHcEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHcccEEEEEcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccEEEc
Coil and Loop (DISEMBL)
MNDWAAPLIAAALFAFlspglvvqmpaknravdFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLFI
Flexible Loop (DISEMBL)
MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLFI
Low Complexity Region (SEG)
MNDWaapliaaalfaflSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTvlyglflilflvilnvhlfi
Disordered region (IsUnstruct)
***WAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLF*
Disordered Region (DISOPRED)
*NDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLFI
Disordered Region (DISEMBL)
MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLFI
Disordered Region (DISPRO)
*NDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLFI
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLFI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
356571543	68	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.647	3e-19
356561821	68	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.632	4e-19
224060267	68	predicted protein [Populus trichocarpa]	1.0	1.0	0.75	2e-17
224129288	68	predicted protein [Populus trichocarpa]	1.0	1.0	0.779	5e-17
297801476	68	hypothetical protein ARALYDRAFT_916123 [	1.0	1.0	0.720	8e-17
15237525	68	uncharacterized protein [Arabidopsis tha	0.985	0.985	0.746	1e-16
388514589	69	unknown [Medicago truncatula]	1.0	0.985	0.661	2e-15
357125870	68	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.588	2e-15
225451475	68	PREDICTED: uncharacterized protein LOC10	0.985	0.985	0.686	5e-15
242054981	68	hypothetical protein SORBIDRAFT_03g03990	1.0	1.0	0.558	4e-14

>gi|356571543|ref|XP_003553936.1| PREDICTED: uncharacterized protein LOC100794064 [Glycine max]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 58/68 (85%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          MNDWA PLIAAALF  LSPG++ Q+P KN    F+NMKT++A++FVHTV+YGLFL+LF V
Sbjct: 1  MNDWAPPLIAAALFWLLSPGMIFQLPGKNAPFQFMNMKTTVASMFVHTVIYGLFLMLFFV 60

Query: 61 ILNVHLFI 68
          +L++HL+I
Sbjct: 61 VLSIHLYI 68

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561821|ref|XP_003549176.1| PREDICTED: uncharacterized protein LOC100820286 [Glycine max]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          MNDWA P IAAALF  LSPG++ Q+P KN   +F+NMKT++A++FVHTV+YGLFL+LF V
Sbjct: 1  MNDWAPPFIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASMFVHTVIYGLFLMLFFV 60

Query: 61 ILNVHLFI 68
          +L++HL+I
Sbjct: 61 VLSIHLYI 68

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060267|ref|XP_002300114.1| predicted protein [Populus trichocarpa] gi|222847372|gb|EEE84919.1| predicted protein [Populus trichocarpa]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 59/68 (86%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          M DWAAPLIAAALFAFLSPGLV QMP K R +DF+NMKTS+AA+FVH V+YGL LILFLV
Sbjct: 1  MKDWAAPLIAAALFAFLSPGLVFQMPGKERPLDFMNMKTSLAAMFVHLVIYGLLLILFLV 60

Query: 61 ILNVHLFI 68
           L+ HL++
Sbjct: 61 ALHAHLYV 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129288|ref|XP_002328937.1| predicted protein [Populus trichocarpa] gi|118483654|gb|ABK93721.1| unknown [Populus trichocarpa] gi|222839367|gb|EEE77704.1| predicted protein [Populus trichocarpa]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 61/68 (89%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          MNDWAA LIAAALFAFLSPGLV QMP K R +DF+NMKTS+AAIFVH V+YGL L+LFLV
Sbjct: 1  MNDWAASLIAAALFAFLSPGLVFQMPGKERPLDFMNMKTSLAAIFVHLVIYGLLLVLFLV 60

Query: 61 ILNVHLFI 68
          IL+VHL++
Sbjct: 61 ILHVHLYV 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801476|ref|XP_002868622.1| hypothetical protein ARALYDRAFT_916123 [Arabidopsis lyrata subsp. lyrata] gi|297314458|gb|EFH44881.1| hypothetical protein ARALYDRAFT_916123 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 62/68 (91%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          M+DWAAPLIA+ALFAFLSPGL++Q P K   V F+NMKT++A+IFVHTVLYGLFLILFLV
Sbjct: 1  MHDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLV 60

Query: 61 ILNVHLFI 68
          +LN+H+++
Sbjct: 61 VLNIHVYV 68

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237525|ref|NP_198912.1| uncharacterized protein [Arabidopsis thaliana] gi|9759142|dbj|BAB09698.1| unnamed protein product [Arabidopsis thaliana] gi|21554020|gb|AAM63101.1| unknown [Arabidopsis thaliana] gi|88010816|gb|ABD38857.1| At5g40960 [Arabidopsis thaliana] gi|332007236|gb|AED94619.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 61/67 (91%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          M+DWAAPLIA+ALFAFLSPGL++Q P K   V F+NMKT++A+IFVHTVLYGLFLILFLV
Sbjct: 1  MHDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLV 60

Query: 61 ILNVHLF 67
          +LNVH++
Sbjct: 61 VLNVHVY 67

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514589|gb|AFK45356.1| unknown [Medicago truncatula]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 59/68 (86%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          MN+WA PLIAAALF  LSPG++ Q+P KN  ++F+NMKT+IA+IFVHTVLYGL L+LF V
Sbjct: 1  MNNWAPPLIAAALFWLLSPGMIFQLPGKNSPLEFMNMKTTIASIFVHTVLYGLLLMLFFV 60

Query: 61 ILNVHLFI 68
          +L++HL+I
Sbjct: 61 VLDLHLYI 68

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125870|ref|XP_003564612.1| PREDICTED: uncharacterized protein LOC100824890 [Brachypodium distachyon]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 51/68 (75%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          M DWA  +IA+ALFA L PG ++QMP   R VDF+NMKTS  AI VH V+YG+ L+LF+V
Sbjct: 1  MTDWAPAIIASALFALLCPGGILQMPGWQRPVDFINMKTSGVAILVHAVIYGVLLMLFVV 60

Query: 61 ILNVHLFI 68
          IL  HL++
Sbjct: 61 ILQAHLYV 68

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451475|ref|XP_002271031.1| PREDICTED: uncharacterized protein LOC100256574 [Vitis vinifera] gi|296082330|emb|CBI21335.3| unnamed protein product [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 56/67 (83%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          M DWAA LIA+ALFAFLSPGL+ Q+P + R  DF+ MKT+IAA+FVH V+YGL LILF +
Sbjct: 1  MRDWAALLIASALFAFLSPGLIFQIPGRERPADFMGMKTNIAAVFVHAVIYGLLLILFFI 60

Query: 61 ILNVHLF 67
          ILNVHL+
Sbjct: 61 ILNVHLY 67

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242054981|ref|XP_002456636.1| hypothetical protein SORBIDRAFT_03g039900 [Sorghum bicolor] gi|241928611|gb|EES01756.1| hypothetical protein SORBIDRAFT_03g039900 [Sorghum bicolor]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          M DWA  +IA ALFA L PG V+QMP + R VD +NMKTS  ++ VH ++Y L L+LF+V
Sbjct: 1  MRDWAPAIIATALFALLCPGGVLQMPGRQRPVDLMNMKTSFPSMLVHAIIYFLLLMLFIV 60

Query: 61 ILNVHLFI 68
          IL  HL+I
Sbjct: 61 ILQPHLYI 68

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
TAIR|locus:2162981	68	AT5G40960 "AT5G40960" [Arabido	0.705	0.705	0.458	6.8e-08
TAIR|locus:2114550	89	AT3G48660 "AT3G48660" [Arabido	0.705	0.539	0.437	1.9e-05
TAIR|locus:2167341	69	AT5G63500 "AT5G63500" [Arabido	0.691	0.681	0.446	8.1e-05
TAIR|locus:4515103138	69	AT3G27027 "AT3G27027" [Arabido	0.661	0.652	0.444	0.0001
TAIR|locus:2091985	142	AT3G27030 "AT3G27030" [Arabido	0.705	0.338	0.416	0.00017
TAIR|locus:2163006	69	AT5G40980 "AT5G40980" [Arabido	0.661	0.652	0.4	0.00035
TAIR|locus:4515103540	69	AT5G08391 "AT5G08391" [Arabido	0.705	0.695	0.312	0.00093

TAIR|locus:2162981 AT5G40960 "AT5G40960" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query:     1 MNDWXXXXXXXXXXXXXSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHT 48
             M+DW             SPGL++Q P K   V F+NMKT++A+IFVHT
Sbjct:     1 MHDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHT 48

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2114550 AT3G48660 "AT3G48660" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query:     1 MNDWXXXXXXXXXXXXXSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHT 48
             M DW             +PGL+ Q+PA+ R V+F NM+TS A+I VHT
Sbjct:     1 MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHT 48

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167341 AT5G63500 "AT5G63500" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query:     1 MNDWXXXXXXXXXXXXXSPGLVVQMPAKNRAVDFLNMKTSIAAIFVH 47
             M DW             SPGL+ Q+PA  R V+F NM+TS A+I VH
Sbjct:     1 MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVH 47

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:4515103138 AT3G27027 "AT3G27027" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query:     3 DWXXXXXXXXXXXXXSPGLVVQMPAKNRAVDFLNMKTSIAAIFVH 47
             DW             SPGL+ Q+PA+ R V+F NM TS  AI VH
Sbjct:     4 DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVH 48

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091985 AT3G27030 "AT3G27030" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 20/48 (41%), Positives = 24/48 (50%)

Query:     1 MNDWXXXXXXXXXXXXXSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHT 48
             M DW             SPGL+  +P  NR VDF  +KT+  AI VHT
Sbjct:    74 MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHT 121

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2163006 AT5G40980 "AT5G40980" [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query:     3 DWXXXXXXXXXXXXXSPGLVVQMPAKNRAVDFLNMKTSIAAIFVH 47
             DW             SPGL+ Q+PA+ R ++F NM TS  +I VH
Sbjct:     4 DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVH 48

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:4515103540 AT5G08391 "AT5G08391" [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query:     1 MNDWXXXXXXXXXXXXXSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHT 48
             M+DW             +PGL+ Q+P + + V+F N +TS  ++ VH+
Sbjct:     1 MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHS 48


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.131   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        35   0.00091  102 3  11 22  0.49    24
                                                     29  0.44    22


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  392 (42 KB)
  Total size of DFA:  61 KB (2058 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  4.89u 0.24s 5.13t   Elapsed:  00:00:00
  Total cpu time:  4.89u 0.24s 5.13t   Elapsed:  00:00:00
  Start:  Fri May 10 07:24:19 2013   End:  Fri May 10 07:24:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	68
pfam11820	68	pfam11820, DUF3339, Protein of unknown function (D	6e-21

>gnl|CDD|192844 pfam11820, DUF3339, Protein of unknown function (DUF3339)

 Score = 76.9 bits (190), Expect = 6e-21
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 1  MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLV 60
          M DW   L+A  LF  LSPGL+ Q+P +NR V+F NM+TS  +I VHT+L+   + +FLV
Sbjct: 1  MADWGPVLVAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSGKSILVHTLLFFALITIFLV 60

Query: 61 ILNVHLFI 68
           L VH++ 
Sbjct: 61 ALGVHIYA 68

This family of proteins are functionally uncharacterized. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
PF11820	68	DUF3339: Protein of unknown function (DUF3339); In	100.0

>PF11820 DUF3339: Protein of unknown function (DUF3339); InterPro: IPR021775 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=2.8e-47  Score=238.85  Aligned_cols=68  Identities=46%  Similarity=0.849  Sum_probs=67.4

Q ss_pred             CCCchHHHHHHHHHHHhcCceeEEecCCCCeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 035304            1 MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGLFLILFLVILNVHLFI   68 (68)
Q Consensus         1 M~DWgpV~i~vvLFvlLsPGLLfq~PG~~r~veFgn~~Tsg~si~VHa~ifF~l~~if~~ai~vHiy~   68 (68)
                      |+|||||+||++||++||||||||+|||+|++|||||||||+||+|||++||+++++|++|+|+|+|+
T Consensus         1 M~DWgpv~i~vvLFvlLsPGLLfqlPG~~r~veFgn~~Tsg~si~vHa~iff~l~~i~~va~~vhiy~   68 (68)
T PF11820_consen    1 MADWGPVLIAVVLFVLLSPGLLFQLPGRGRVVEFGNMKTSGKSILVHALIFFALFTIFLVAIGVHIYT   68 (68)
T ss_pred             CCcchhHHHHHHHHHHhCCceEEEecCCCceEEEcCCcchHHHHHHHHHHHHHHHHHHHHHheeEeeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999996

This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00