Citrus Sinensis ID: 035410

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqdidcgglckqrcslhsrpnlcnracgtccvrckcvppgtagnrelcgscytdmtthgnrtkcp
Flexible Loop (DISEMBL)
MQDIDCGGLCKqrcslhsrpnlcnrACGTCCVRCKcvppgtagnrelcgscytdmtthgnrtkcp
Low Complexity Region (SEG)
MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP
Disordered region (IsUnstruct)
****DCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDM**********
Disordered Region (DISOPRED)
**DIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHG******
Disordered Region (DISEMBL)
MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP
Disordered Region (DISPRO)
**DIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTT******C*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
Q93X17	104	Snakin-2 OS=Solanum tuber	N/A	no	0.984	0.615	0.676	2e-18
Q9LFR3	275	Gibberellin-regulated pro	yes	no	0.953	0.225	0.661	1e-16
P46687	99	Gibberellin-regulated pro	no	no	0.984	0.646	0.661	9e-16
F4IQJ4	94	Gibberellin-regulated pro	no	no	0.938	0.648	0.661	2e-15
P46689	98	Gibberellin-regulated pro	no	no	0.969	0.642	0.625	4e-15
Q8GWK5	119	Gibberellin-regulated pro	no	no	0.938	0.512	0.564	6e-13
P46688	99	Gibberellin-regulated pro	no	no	0.984	0.646	0.630	4e-10
Q6NMQ7	101	Gibberellin-regulated pro	no	no	0.984	0.633	0.415	2e-06
O80641	87	Gibberellin-regulated pro	no	no	0.953	0.712	0.428	7e-06
Q948Z4	88	Snakin-1 OS=Solanum tuber	N/A	no	0.907	0.670	0.45	1e-05

>sp|Q93X17|SNAK2_SOLTU Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
            + IDCGG C  RC L SRP LCNRACGTCC RC CVPPGT+GN E C  CY  +TTHGN
Sbjct: 41  YKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGN 99

Query: 61  RTKCP 65
           + KCP
Sbjct: 100 KRKCP 104

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.
Solanum tuberosum (taxid: 4113)

>sp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 46/62 (74%)

Query: 4   IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
           IDC  LC  RC  HSR N+C RAC TCC RCKCVPPGT GN+E CGSCY +M T G ++K
Sbjct: 214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273

Query: 64  CP 65
           CP
Sbjct: 274 CP 275

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 1  MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
          +  IDCGG CK RCS  SRPNLC RAC +CC RC CVPPGTAGN  LC  CY  +TT G 
Sbjct: 36 VVKIDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGG 94

Query: 61 RTKCP 65
          R KCP
Sbjct: 95 RLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IQJ4|GASAB_ARATH Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 47/62 (75%), Gaps = 1/62 (1%)

Query: 4  IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
          IDC   C++RCSL SRPNLC+RACGTCC RC CV PGT+GN + C  CY  +TTHG R K
Sbjct: 34 IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKC-PCYGSLTTHGGRRK 92

Query: 64 CP 65
          CP
Sbjct: 93 CP 94

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 2  QDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNR 61
          + IDCG  C  RC L  RP LC+RACGTCC RC CVPPGT GN + C  CY  +TTHG R
Sbjct: 36 KKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGR 94

Query: 62 TKCP 65
           KCP
Sbjct: 95 RKCP 98

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWK5|GASA9_ARATH Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 4   IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
           I+CG  C +RCS  SR  +C+RACG+CC +C+CVPPGT+GN   C  CY  + THGN+ K
Sbjct: 59  INCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASC-PCYASIRTHGNKLK 117

Query: 64  CP 65
           CP
Sbjct: 118 CP 119

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46688|GASA2_ARATH Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 1  MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
          +  IDCGG CK RCS  SR  LC RAC +CC RC CVPPGT+GN  LC  CY  +TTHG 
Sbjct: 36 VVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGG 94

Query: 61 RTKCP 65
          R KCP
Sbjct: 95 RLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           ++   CGG C +RCS       C   C  CC +C CVPPGT GN+++C  CY +  T   
Sbjct: 38  LKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVC-PCYNNWKTQQG 96

Query: 61  RTKCP 65
             KCP
Sbjct: 97  GPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana GN=At2g39540 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 3  DIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRT 62
          D  CGG C  RCS   +   C + C  CC +C CVP GT G+++ C  CY DM      +
Sbjct: 26 DSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDEC-PCYRDMKNSKGGS 84

Query: 63 KCP 65
          KCP
Sbjct: 85 KCP 87

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q948Z4|SNAK1_SOLTU Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6  CGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP 65
          C   CK RCS     + C + CG CC  CKCVP GT GN+  C  CY D      ++KCP
Sbjct: 30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHEC-PCYRDKKNSKGKSKCP 88

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.

Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
194466223	94	gonadotropin beta chain [Arachis hypogae	1.0	0.691	0.969	5e-29
224119232	109	predicted protein [Populus trichocarpa]	1.0	0.596	0.938	5e-29
224133432	109	predicted protein [Populus trichocarpa]	1.0	0.596	0.907	5e-28
388504950	115	unknown [Lotus japonicus]	1.0	0.565	0.907	1e-27
359491268	112	PREDICTED: snakin-2-like [Vitis vinifera	1.0	0.580	0.907	4e-27
297733836	111	unnamed protein product [Vitis vinifera]	1.0	0.585	0.907	5e-27
356562765	115	PREDICTED: snakin-2-like [Glycine max]	1.0	0.565	0.892	5e-27
217072802	115	unknown [Medicago truncatula] gi|3885206	1.0	0.565	0.892	5e-27
351727857	115	uncharacterized protein LOC100306333 pre	1.0	0.565	0.892	7e-27
351722263	117	uncharacterized protein LOC100305516 pre	1.0	0.555	0.907	8e-27

>gi|194466223|gb|ACF74342.1| gonadotropin beta chain [Arachis hypogaea]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/65 (96%), Positives = 65/65 (100%)

Query: 1  MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
          MQDIDCGGLCK+RCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN
Sbjct: 30 MQDIDCGGLCKERCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 89

Query: 61 RTKCP 65
          +TKCP
Sbjct: 90 KTKCP 94

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119232|ref|XP_002318020.1| predicted protein [Populus trichocarpa] gi|118482787|gb|ABK93311.1| unknown [Populus trichocarpa] gi|118485213|gb|ABK94467.1| unknown [Populus trichocarpa] gi|118487438|gb|ABK95547.1| unknown [Populus trichocarpa] gi|222858693|gb|EEE96240.1| predicted protein [Populus trichocarpa]

 Score =  131 bits (329), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/65 (93%), Positives = 65/65 (100%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGT+GNRE+CG+CYTDMTTHGN
Sbjct: 45  MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTSGNREVCGTCYTDMTTHGN 104

Query: 61  RTKCP 65
           +TKCP
Sbjct: 105 KTKCP 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133432|ref|XP_002321566.1| predicted protein [Populus trichocarpa] gi|222868562|gb|EEF05693.1| predicted protein [Populus trichocarpa]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/65 (90%), Positives = 64/65 (98%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLCKQRCSLHSRPN+C RACGTCCVRCKCVPPGT+GNRE+CG+CYTDMTTHGN
Sbjct: 45  MQDIDCGGLCKQRCSLHSRPNVCTRACGTCCVRCKCVPPGTSGNREVCGTCYTDMTTHGN 104

Query: 61  RTKCP 65
           +TKCP
Sbjct: 105 KTKCP 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504950|gb|AFK40541.1| unknown [Lotus japonicus]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/65 (90%), Positives = 62/65 (95%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLCK RCS+HSRPNLC RACGTCCVRCKCVPPGTAGNRELCG+CYTDM THGN
Sbjct: 51  MQDIDCGGLCKSRCSVHSRPNLCKRACGTCCVRCKCVPPGTAGNRELCGTCYTDMVTHGN 110

Query: 61  RTKCP 65
           +TKCP
Sbjct: 111 KTKCP 115

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491268|ref|XP_003634253.1| PREDICTED: snakin-2-like [Vitis vinifera]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/65 (90%), Positives = 62/65 (95%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLCK RCSLHSRPN+C RACGTCCVRCKCVPPGT+GNRELCG CYTDMTTHGN
Sbjct: 48  MQDIDCGGLCKDRCSLHSRPNVCVRACGTCCVRCKCVPPGTSGNRELCGKCYTDMTTHGN 107

Query: 61  RTKCP 65
           +TKCP
Sbjct: 108 KTKCP 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733836|emb|CBI15083.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/65 (90%), Positives = 62/65 (95%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLCK RCSLHSRPN+C RACGTCCVRCKCVPPGT+GNRELCG CYTDMTTHGN
Sbjct: 47  MQDIDCGGLCKDRCSLHSRPNVCVRACGTCCVRCKCVPPGTSGNRELCGKCYTDMTTHGN 106

Query: 61  RTKCP 65
           +TKCP
Sbjct: 107 KTKCP 111

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562765|ref|XP_003549639.1| PREDICTED: snakin-2-like [Glycine max]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 62/65 (95%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLCK RCS HSRPN+CNRACGTCCVRCKCVPPGT+GNRELCG+CYTDM THGN
Sbjct: 51  MQDIDCGGLCKTRCSAHSRPNVCNRACGTCCVRCKCVPPGTSGNRELCGTCYTDMITHGN 110

Query: 61  RTKCP 65
           +TKCP
Sbjct: 111 KTKCP 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072802|gb|ACJ84761.1| unknown [Medicago truncatula] gi|388520629|gb|AFK48376.1| unknown [Medicago truncatula]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 62/65 (95%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLC+ RCS+HSRPNLC RACGTCCVRCKCVPPGTAGNRE CG+CYTDMTTHGN
Sbjct: 51  MQDIDCGGLCRSRCSVHSRPNLCKRACGTCCVRCKCVPPGTAGNREFCGACYTDMTTHGN 110

Query: 61  RTKCP 65
           +TKCP
Sbjct: 111 KTKCP 115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727857|ref|NP_001237175.1| uncharacterized protein LOC100306333 precursor [Glycine max] gi|255628227|gb|ACU14458.1| unknown [Glycine max]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 62/65 (95%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLCK R S HSRPN+CNRACGTCCVRCKCVPPGT+GNRELCG+CYTDMTTHGN
Sbjct: 51  MQDIDCGGLCKTRYSAHSRPNVCNRACGTCCVRCKCVPPGTSGNRELCGTCYTDMTTHGN 110

Query: 61  RTKCP 65
           +TKCP
Sbjct: 111 KTKCP 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722263|ref|NP_001236470.1| uncharacterized protein LOC100305516 precursor [Glycine max] gi|255625763|gb|ACU13226.1| unknown [Glycine max]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/65 (90%), Positives = 62/65 (95%)

Query: 1   MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
           MQDIDCGGLCK RCS HSRPNLC RACGTCCVRCKCVPPGT+GNRELCG+CYTDMTTHGN
Sbjct: 53  MQDIDCGGLCKTRCSAHSRPNLCTRACGTCCVRCKCVPPGTSGNRELCGTCYTDMTTHGN 112

Query: 61  RTKCP 65
           +TKCP
Sbjct: 113 KTKCP 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
TAIR|locus:2136892	99	GASA3 "AT4G09600" [Arabidopsis	0.938	0.616	0.693	1.1e-21
TAIR|locus:2062175	94	AT2G18420 "AT2G18420" [Arabido	0.938	0.648	0.661	1.5e-21
TAIR|locus:2147810	275	GASA14 "AT5G14920" [Arabidopsi	0.953	0.225	0.661	2.4e-21
TAIR|locus:2005634	98	GASA1 "AT1G75750" [Arabidopsis	0.938	0.622	0.645	1e-20
TAIR|locus:2136897	99	GASA2 "AT4G09610" [Arabidopsis	0.938	0.616	0.661	1e-20
TAIR|locus:2199645	119	AT1G22690 "AT1G22690" [Arabido	0.938	0.512	0.564	1.7e-18
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.984	0.633	0.415	1e-11
TAIR|locus:505006706	89	AT5G59845 "AT5G59845" [Arabido	0.907	0.662	0.459	1.3e-11
TAIR|locus:2039732	87	AT2G39540 [Arabidopsis thalian	0.953	0.712	0.428	1.3e-11
TAIR|locus:4010713424	90	AT1G10588 [Arabidopsis thalian	0.907	0.655	0.459	4.5e-11

TAIR|locus:2136892 GASA3 "AT4G09600" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 43/62 (69%), Positives = 45/62 (72%)

Query:     4 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
             IDCGG CK RCS  SRPNLC RAC +CC RC CVPPGTAGN  LC  CY  +TT G R K
Sbjct:    39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLK 97

Query:    64 CP 65
             CP
Sbjct:    98 CP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS;TAS

TAIR|locus:2062175 AT2G18420 "AT2G18420" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 41/62 (66%), Positives = 47/62 (75%)

Query:     4 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
             IDC   C++RCSL SRPNLC+RACGTCC RC CV PGT+GN + C  CY  +TTHG R K
Sbjct:    34 IDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKC-PCYGSLTTHGGRRK 92

Query:    64 CP 65
             CP
Sbjct:    93 CP 94

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2147810 GASA14 "AT5G14920" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 41/62 (66%), Positives = 46/62 (74%)

Query:     4 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
             IDC  LC  RC  HSR N+C RAC TCC RCKCVPPGT GN+E CGSCY +M T G ++K
Sbjct:   214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273

Query:    64 CP 65
             CP
Sbjct:   274 CP 275

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2005634 GASA1 "AT1G75750" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 40/62 (64%), Positives = 43/62 (69%)

Query:     4 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
             IDCG  C  RC L  RP LC+RACGTCC RC CVPPGT GN + C  CY  +TTHG R K
Sbjct:    38 IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRK 96

Query:    64 CP 65
             CP
Sbjct:    97 CP 98

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IMP;IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2136897 GASA2 "AT4G09610" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 41/62 (66%), Positives = 44/62 (70%)

Query:     4 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
             IDCGG CK RCS  SR  LC RAC +CC RC CVPPGT+GN  LC  CY  +TTHG R K
Sbjct:    39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLK 97

Query:    64 CP 65
             CP
Sbjct:    98 CP 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2199645 AT1G22690 "AT1G22690" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 35/62 (56%), Positives = 45/62 (72%)

Query:     4 IDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTK 63
             I+CG  C +RCS  SR  +C+RACG+CC +C+CVPPGT+GN   C  CY  + THGN+ K
Sbjct:    59 INCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASC-PCYASIRTHGNKLK 117

Query:    64 CP 65
             CP
Sbjct:   118 CP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 27/65 (41%), Positives = 35/65 (53%)

Query:     1 MQDIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGN 60
             ++   CGG C +RCS       C   C  CC +C CVPPGT GN+++C  CY +  T   
Sbjct:    38 LKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVC-PCYNNWKTQQG 96

Query:    61 RTKCP 65
               KCP
Sbjct:    97 GPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:505006706 AT5G59845 "AT5G59845" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 28/61 (45%), Positives = 34/61 (55%)

Query:     6 CGGLCKQRCSLHSRPNLCNRACGTCCVRCK-CVPPGTAGNRELCGSCYTDMTTHGNRTKC 64
             CGG C  RCS   R + C + C  CC +C  CVP GT GN++ C  CY DM      +KC
Sbjct:    30 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDEC-PCYRDMKNSKGTSKC 88

Query:    65 P 65
             P
Sbjct:    89 P 89

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2039732 AT2G39540 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 27/63 (42%), Positives = 34/63 (53%)

Query:     3 DIDCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRT 62
             D  CGG C  RCS   +   C + C  CC +C CVP GT G+++ C  CY DM      +
Sbjct:    26 DSSCGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDEC-PCYRDMKNSKGGS 84

Query:    63 KCP 65
             KCP
Sbjct:    85 KCP 87

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:4010713424 AT1G10588 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 28/61 (45%), Positives = 33/61 (54%)

Query:     6 CGGLCKQRCSLHSRPNL-CNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKC 64
             CGG C  RCS   R +  C   C  CC +C CVP GT GN++ C  CY DM      +KC
Sbjct:    31 CGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDEC-PCYRDMKNSKGGSKC 89

Query:    65 P 65
             P
Sbjct:    90 P 90

GO:0005576 "extracellular region" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_kg.C_LG_XII0019 SubName- Full=Putative uncharacterized protein; (109 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	65
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	1e-17

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 68.1 bits (167), Expect = 1e-17
 Identities = 36/61 (59%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 5  DCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKC 64
          DCGG C  RCS  SR   C RACG CC +C CVPPGT GN++ C  CY +  THG R KC
Sbjct: 1  DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDEC-PCYNNWKTHGGRPKC 59

Query: 65 P 65
          P
Sbjct: 60 P 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	65
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=3.7e-38  Score=191.19  Aligned_cols=60  Identities=67%  Similarity=1.474  Sum_probs=59.0

Q ss_pred             cchHHHhHHHhcCCCCChHHHHHhhhcCcccccCCCCCCCcCCchhHHhhhhhcCCCCCCC
Q 035410            5 DCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTAGNRELCGSCYTDMTTHGNRTKCP   65 (65)
Q Consensus         5 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~Gnk~~Cp~CY~~m~t~~g~~KCP   65 (65)
                      ||+++|++|||+++++++||+|||+||++|+|||||||||+|+|| ||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~Cp-CY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECP-CYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCC-ChhhhhccCCCCCCc
Confidence            799999999999999999999999999999999999999999996 999999999999998

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00