Citrus Sinensis ID: 035428

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-------
Protein Sequence
MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKSF
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHccccccccEEEccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccHHHHHHHHHHHHHHccccccccEEcccccccEEEEEccccccccc
Coil and Loop (DISEMBL)
mmpseivgekmeperfYDAVNYILSMQsetggvpaweprrapswleVKITSTYTKSF
Flexible Loop (DISEMBL)
mmpseivgekmepeRFYDAVNYILSMQSEtggvpaweprrapswlevkitstytksf
Low Complexity Region (SEG)
MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKSF
Disordered region (IsUnstruct)
**************RFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKI********
Disordered Region (DISOPRED)
**PSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST*****
Disordered Region (DISEMBL)
MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKSF
Disordered Region (DISPRO)
**PSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	57	2.2.26 [Sep-21-2011]
Q764T8	758	Lupeol synthase OS=Glycyr	N/A	no	0.789	0.059	0.733	2e-13
Q2XPU7	769	Lupeol synthase OS=Ricinu	N/A	no	0.807	0.059	0.717	3e-13
E2IUA6	779	Taraxerol synthase OS=Kal	N/A	no	0.824	0.060	0.659	5e-13
Q948R6	759	Isomultiflorenol synthase	N/A	no	0.771	0.057	0.704	2e-12
A8C980	759	Germanicol synthase OS=Rh	N/A	no	0.824	0.061	0.659	3e-12
Q9MB42	765	Beta-amyrin synthase OS=G	N/A	no	0.824	0.061	0.659	3e-12
Q8W3Z2	755	Lupeol synthase OS=Betula	N/A	no	0.789	0.059	0.688	4e-12
Q8RWT0	763	Amyrin synthase LUP2 OS=A	yes	no	0.824	0.061	0.595	4e-12
Q9LRH7	764	Mixed-amyrin synthase OS=	N/A	no	0.824	0.061	0.638	4e-12
A8C981	771	Taraxerol synthase OS=Rhi	N/A	no	0.824	0.060	0.638	7e-12

>sp|Q764T8|LUPS_GLYGL Lupeol synthase OS=Glycyrrhiza glabra GN=LUS1 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/45 (73%), Positives = 37/45 (82%)

Query: 2   MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MPSE+VG KME ERFYDAVN ILS+QS  GG PAWEP++A  WLE
Sbjct: 497 MPSELVGGKMETERFYDAVNVILSLQSSNGGFPAWEPQKAYRWLE 541

Oxidosqualene cyclase involved in the biosynthesis of lupeol. Required for the production of betulinic acid.
Glycyrrhiza glabra (taxid: 49827)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 4EC: 1

>sp|Q2XPU7|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MMP EIVGEKMEPE+ YD+VN ILS+QS+ GG  AWEP RA SW+E
Sbjct: 498 MMPPEIVGEKMEPEKVYDSVNVILSLQSQNGGFTAWEPARAGSWME 543

Oxidosqualene cyclase involved in the biosynthesis of the cuticular lupeol of glaucous individuals, but not of the glossy phenotype.

Ricinus communis (taxid: 3988)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 4

EC: 1

>sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 39/47 (82%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           +MP E+VGEKMEPER YD+VN +LS+QS+ GG+ AWEP  AP WLE+
Sbjct: 518 LMPPELVGEKMEPERLYDSVNILLSLQSKNGGLAAWEPAGAPEWLEL 564

Oxidosqualene cyclase that generates taraxerol, a triterpenoid product. Taraxerol is probably required to coat the leaf exterior as a defense compound against pathogens or herbivores.

Kalanchoe daigremontiana (taxid: 23013)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 5

>sp|Q948R6|IMFS_LUFCY Isomultiflorenol synthase OS=Luffa cylindrica GN=IMS1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 37/44 (84%)

Query: 3   PSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           P +IVGEKMEPERFYDAVN IL+MQS+ GG+PAWEP  +  W+E
Sbjct: 498 PPDIVGEKMEPERFYDAVNVILNMQSKNGGLPAWEPASSYYWME 541

Oxidosqualene cyclase involved in the biosynthesis of bryonolic acid. Converts oxidosqualene to isomultiflorenol.

Luffa cylindrica (taxid: 3670)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 6

>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           MMP EIVGE MEPER YD+VN +LS+QS+ GG+ AWEP  A  WLE+
Sbjct: 499 MMPPEIVGEHMEPERLYDSVNVLLSLQSKNGGLSAWEPAGAQDWLEL 545

Multifunctional triterpene synthase producing germanicol, beta-amyrin and lupeol in the ratio 63:33:4.

Rhizophora stylosa (taxid: 98588)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 4

>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           M+P EIVGEKMEPER YD+VN +LS+QS+ GG+ AWEP  A  WLE+
Sbjct: 499 MLPPEIVGEKMEPERLYDSVNVLLSLQSKKGGLSAWEPAGAQEWLEL 545

Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation. Required for the production of soyasaponins and glycyrrhizin.

Glycyrrhiza glabra (taxid: 49827)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 9

>sp|Q8W3Z2|LUPS_BETPL Lupeol synthase OS=Betula platyphylla GN=OSCBPW PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 2   MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MP ++VGEK+E ER YDAVN ILS+QS  GG PAWEP+RA  WLE
Sbjct: 497 MPPDLVGEKIEKERLYDAVNVILSLQSSNGGFPAWEPQRAYGWLE 541

Oxidosqualene cyclase involved in the biosynthesis of lupeol.

Betula platyphylla (taxid: 78630)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 4

EC: 1

>sp|Q8RWT0|LUP2_ARATH Amyrin synthase LUP2 OS=Arabidopsis thaliana GN=LUP2 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           MMP+E+VG+K++PE+ YD+VN +LS+Q E GG+ AWEP RA  WLE+
Sbjct: 500 MMPAEVVGQKIDPEQLYDSVNLLLSLQGEKGGLTAWEPVRAQEWLEL 546

Multifunctional enzyme that converts oxidosqualene to nine different triterpenes, mainly lupeol, beta-amyrin and alpha-amyrin in a 15:50:30 ratio.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 4

EC: 1

>sp|Q9LRH7|ABAMS_PEA Mixed-amyrin synthase OS=Pisum sativum GN=OSCPSM PE=1 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           M+P EIVGEKMEPE  YD+VN +LS+Q + GG+PAWEP  A  WLE+
Sbjct: 499 MLPPEIVGEKMEPEMLYDSVNILLSLQGKKGGLPAWEPSEAVEWLEL 545

Multifunctional oxidosqualene cyclase producing alpha-and beta-amyrin and several other minor triterpenes.

Pisum sativum (taxid: 3888)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 4

EC: 0

>sp|A8C981|TARS_RHISY Taraxerol synthase OS=Rhizophora stylosa GN=M2 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           MMP EIVGEK+EPE+ Y AV++ILS+QS+ GG+  WEP R   WLEV
Sbjct: 501 MMPPEIVGEKLEPEKLYLAVDFILSLQSKNGGLTCWEPARGGKWLEV 547

Multifunctional triterpene synthase producing taraxerol, beta-amyrin and lupeol in the ratio 70:17:13.

Rhizophora stylosa (taxid: 98588)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
356557870	723	PREDICTED: amyrin synthase LUP2-like [Gl	0.807	0.063	0.695	1e-12
75226567	758	RecName: Full=Lupeol synthase; Short=GgL	0.789	0.059	0.733	1e-11
360038892	758	lupeol synthase [Glycyrrhiza uralensis]	0.789	0.059	0.733	1e-11
83638481	594	beta-amyrin synthase, partial [Gypsophil	0.807	0.077	0.695	1e-11
122210891	769	RecName: Full=Lupeol synthase gi|8246880	0.807	0.059	0.717	1e-11
255572809	741	Cycloartenol synthase, putative [Ricinus	0.807	0.062	0.717	1e-11
403377890	779	RecName: Full=Taraxerol synthase; Short=	0.824	0.060	0.659	2e-11
2598587	472	cycloartenol synthase [Medicago truncatu	0.789	0.095	0.711	4e-11
357513605	718	Beta-amyrin synthase [Medicago truncatul	0.824	0.065	0.638	4e-11
223469143	762	putative beta amyrin synthase [Malus x d	0.824	0.061	0.659	5e-11

>gi|356557870|ref|XP_003547233.1| PREDICTED: amyrin synthase LUP2-like [Glycine max]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 40/46 (86%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MMP EIVGEKMEPE+ YD+V++ILS+QS+ GG+PAWEP R+  WLE
Sbjct: 460 MMPQEIVGEKMEPEKLYDSVDFILSLQSKNGGIPAWEPVRSQKWLE 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75226567|sp|Q764T8.1|LUPS_GLYGL RecName: Full=Lupeol synthase; Short=GgLUS1 gi|41687978|dbj|BAD08587.1| lupeol synthase [Glycyrrhiza glabra]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/45 (73%), Positives = 37/45 (82%)

Query: 2   MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MPSE+VG KME ERFYDAVN ILS+QS  GG PAWEP++A  WLE
Sbjct: 497 MPSELVGGKMETERFYDAVNVILSLQSSNGGFPAWEPQKAYRWLE 541

Source: Glycyrrhiza glabra

Species: Glycyrrhiza glabra

Genus: Glycyrrhiza

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|360038892|dbj|BAL41371.1| lupeol synthase [Glycyrrhiza uralensis]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/45 (73%), Positives = 37/45 (82%)

Query: 2   MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MPSE+VG KME ERFYDAVN ILS+QS  GG PAWEP++A  WLE
Sbjct: 497 MPSELVGGKMETERFYDAVNVILSLQSSNGGFPAWEPQKAYRWLE 541

Source: Glycyrrhiza uralensis

Species: Glycyrrhiza uralensis

Genus: Glycyrrhiza

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83638481|gb|ABC33922.1| beta-amyrin synthase, partial [Gypsophila paniculata]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 39/46 (84%)

Query: 2   MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           MP EIVGEKM+PER YD+VN +LS+QSE GG+PAWEP  A +WLE+
Sbjct: 335 MPPEIVGEKMDPERLYDSVNILLSLQSENGGLPAWEPAGAQAWLEL 380

Source: Gypsophila paniculata

Species: Gypsophila paniculata

Genus: Gypsophila

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|122210891|sp|Q2XPU7.1|LUPS_RICCO RecName: Full=Lupeol synthase gi|82468803|gb|ABB76766.1| lupeol synthase [Ricinus communis]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MMP EIVGEKMEPE+ YD+VN ILS+QS+ GG  AWEP RA SW+E
Sbjct: 498 MMPPEIVGEKMEPEKVYDSVNVILSLQSQNGGFTAWEPARAGSWME 543

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572809|ref|XP_002527337.1| Cycloartenol synthase, putative [Ricinus communis] gi|223533337|gb|EEF35089.1| Cycloartenol synthase, putative [Ricinus communis]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MMP EIVGEKMEPE+ YD+VN ILS+QS+ GG  AWEP RA SW+E
Sbjct: 498 MMPPEIVGEKMEPEKVYDSVNVILSLQSQNGGFTAWEPARAGSWME 543

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|403377890|sp|E2IUA6.1|TARS_KALDA RecName: Full=Taraxerol synthase; Short=KdTAS gi|300807974|gb|ADK35123.1| taraxerol synthase [Kalanchoe daigremontiana]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 39/47 (82%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           +MP E+VGEKMEPER YD+VN +LS+QS+ GG+ AWEP  AP WLE+
Sbjct: 518 LMPPELVGEKMEPERLYDSVNILLSLQSKNGGLAAWEPAGAPEWLEL 564

Source: Kalanchoe daigremontiana

Species: Kalanchoe daigremontiana

Genus: Kalanchoe

Family: Crassulaceae

Order: Saxifragales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2598587|emb|CAA75588.1| cycloartenol synthase [Medicago truncatula]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 2   MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           MPS++VGEK+E ER YDAVN ILS+QS  GG PAWEP+ A SWLE
Sbjct: 207 MPSDLVGEKLESERLYDAVNVILSLQSSNGGFPAWEPQNAYSWLE 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513605|ref|XP_003627091.1| Beta-amyrin synthase [Medicago truncatula] gi|355521113|gb|AET01567.1| Beta-amyrin synthase [Medicago truncatula]

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 38/47 (80%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           M+P EIVGEKMEPER YD+VN + S+Q + GG+PAWEP +A  WLE+
Sbjct: 455 MLPPEIVGEKMEPERLYDSVNILFSLQGKKGGLPAWEPSKALEWLEL 501

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223469143|gb|ACM89978.1| putative beta amyrin synthase [Malus x domestica]

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/47 (65%), Positives = 38/47 (80%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           MMP E+VGE+MEPER YDAVN I+S+QS+ GG+ AWEP  A  WLE+
Sbjct: 499 MMPPEMVGEQMEPERLYDAVNVIISLQSKNGGLAAWEPAGAADWLEM 545

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
UNIPROTKB|Q2XPU7	769	Q2XPU7 "Lupeol synthase" [Rici	0.807	0.059	0.717	7.6e-13
UNIPROTKB|E2IUA6	779	E2IUA6 "Taraxerol synthase" [K	0.824	0.060	0.659	1e-12
UNIPROTKB|Q764T8	758	LUS1 "Lupeol synthase" [Glycyr	0.789	0.059	0.733	1.6e-12
UNIPROTKB|Q9LRH7	764	OSCPSM "Mixed-amyrin synthase"	0.824	0.061	0.638	7e-12
UNIPROTKB|Q8W3Z2	755	OSCBPW "Lupeol synthase" [Betu	0.789	0.059	0.688	8.8e-12
UNIPROTKB|Q8W3Z1	779	OSCBPY "Beta-amyrin synthase"	0.894	0.065	0.615	9.2e-12
TAIR|locus:2207300	763	LUP2 "lupeol synthase 2" [Arab	0.824	0.061	0.595	1.9e-11
UNIPROTKB|A8CDT3	761	LUS "Lupeol synthase" [Bruguie	0.807	0.060	0.652	3e-11
UNIPROTKB|A8CDT2	759	BAS "Beta-amyrin synthase" [Br	0.824	0.061	0.638	5e-11
UNIPROTKB|E2IUA9	765	E2IUA9 "Lupeol synthase" [Kala	0.824	0.061	0.595	6.4e-11

UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)]

 Score = 181 (68.8 bits), Expect = 7.6e-13, P = 7.6e-13
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query:     1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
             MMP EIVGEKMEPE+ YD+VN ILS+QS+ GG  AWEP RA SW+E
Sbjct:   498 MMPPEIVGEKMEPEKVYDSVNVILSLQSQNGGFTAWEPARAGSWME 543

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042299 "lupeol synthase activity" evidence=IDA

GO:0042335 "cuticle development" evidence=IDA

UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)]

 Score = 180 (68.4 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 31/47 (65%), Positives = 39/47 (82%)

Query:     1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
             +MP E+VGEKMEPER YD+VN +LS+QS+ GG+ AWEP  AP WLE+
Sbjct:   518 LMPPELVGEKMEPERLYDSVNILLSLQSKNGGLAAWEPAGAPEWLEL 564

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0016866 "intramolecular transferase activity" evidence=IDA

UNIPROTKB|Q764T8 LUS1 "Lupeol synthase" [Glycyrrhiza glabra (taxid:49827)]

 Score = 178 (67.7 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 33/45 (73%), Positives = 37/45 (82%)

Query:     2 MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
             MPSE+VG KME ERFYDAVN ILS+QS  GG PAWEP++A  WLE
Sbjct:   497 MPSELVGGKMETERFYDAVNVILSLQSSNGGFPAWEPQKAYRWLE 541

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042299 "lupeol synthase activity" evidence=IDA

UNIPROTKB|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)]

 Score = 172 (65.6 bits), Expect = 7.0e-12, P = 7.0e-12
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query:     1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
             M+P EIVGEKMEPE  YD+VN +LS+Q + GG+PAWEP  A  WLE+
Sbjct:   499 MLPPEIVGEKMEPEMLYDSVNILLSLQGKKGGLPAWEPSEAVEWLEL 545

GO:0005575 "cellular_component" evidence=ND

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

GO:0042561 "alpha-amyrin synthase activity" evidence=IDA

UNIPROTKB|Q8W3Z2 OSCBPW "Lupeol synthase" [Betula platyphylla (taxid:78630)]

 Score = 171 (65.3 bits), Expect = 8.8e-12, P = 8.8e-12
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query:     2 MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
             MP ++VGEK+E ER YDAVN ILS+QS  GG PAWEP+RA  WLE
Sbjct:   497 MPPDLVGEKIEKERLYDAVNVILSLQSSNGGFPAWEPQRAYGWLE 541

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042299 "lupeol synthase activity" evidence=IDA

UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)]

 Score = 171 (65.3 bits), Expect = 9.2e-12, P = 9.2e-12
 Identities = 32/52 (61%), Positives = 41/52 (78%)

Query:     1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST 52
             +MP EIVGEKMEPE+ YD+VN +LS+QS+ GG+ AWEP  A  WLE+ + ST
Sbjct:   499 IMPPEIVGEKMEPEQLYDSVNVLLSLQSKNGGLAAWEPAGAQEWLEL-LNST 549

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

TAIR|locus:2207300 LUP2 "lupeol synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query:     1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
             MMP+E+VG+K++PE+ YD+VN +LS+Q E GG+ AWEP RA  WLE+
Sbjct:   500 MMPAEVVGQKIDPEQLYDSVNLLLSLQGEKGGLTAWEPVRAQEWLEL 546

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016866 "intramolecular transferase activity" evidence=IEA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IGI;ISS;RCA

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042299 "lupeol synthase activity" evidence=IGI

UNIPROTKB|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)]

 Score = 166 (63.5 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query:     1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
             MMP E+VGEKM P+R YDAVN I+S+QS+ GG  AWEP  A SW+E
Sbjct:   498 MMPPELVGEKMGPQRMYDAVNVIISLQSKNGGCSAWEPAGAGSWME 543

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0042299 "lupeol synthase activity" evidence=IDA

UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)]

 Score = 164 (62.8 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query:     1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
             MMP EIVGE M PER YD+VN +LS+QS+ GG+ AWEP  A  WLE+
Sbjct:   499 MMPPEIVGEHMVPERLYDSVNVLLSLQSKNGGLSAWEPAGAQEWLEL 545

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)]

 Score = 163 (62.4 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query:     1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
             MM  E+VGE M PE  Y++VN +LS+QS+ GG+PAWEP  AP WLE+
Sbjct:   499 MMQPEVVGESMAPESLYNSVNVLLSLQSQNGGLPAWEPAGAPEWLEL 545

GO:0016104 "triterpenoid biosynthetic process" evidence=IDA

GO:0016866 "intramolecular transferase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017057001 SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (754 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	57
PLN02993	763	PLN02993, PLN02993, lupeol synthase	3e-17
PLN03012	759	PLN03012, PLN03012, Camelliol C synthase	2e-16
cd02892	634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	5e-13
cd02889	348	cd02889, SQCY, Squalene cyclase (SQCY) domain; fou	5e-12
TIGR01787	621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	1e-08
TIGR03463	634	TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	1e-05

>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase

 Score = 73.0 bits (179), Expect = 3e-17
 Identities = 29/47 (61%), Positives = 40/47 (85%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           MMP+++VG+K++PE+ YD+VN +LS+QSE GGV AWEP RA  WLE+
Sbjct: 500 MMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLEL 546

Length = 763

>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase

 Score = 70.4 bits (172), Expect = 2e-16
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           M+  +IVG KM+PE+ +DAVN +LS+QS+ GG+ AWEP  AP WLE+
Sbjct: 500 MIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLEL 546

Length = 759

>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score = 60.7 bits (148), Expect = 5e-13
 Identities = 20/42 (47%), Positives = 26/42 (61%)

Query: 8   GEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKI 49
           GEK+  ER YDAV+++L MQ+  GG  A+EP     WLE   
Sbjct: 394 GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLN 435

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. Length = 634

>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score = 57.6 bits (140), Expect = 5e-12
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 8   GEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           G+K+  ER YDAV+++LSMQ+  GG  A+EP     +LE+
Sbjct: 111 GKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLEL 150

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain. Length = 348

>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 9   EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           E ++ +R  DAVN+IL MQS  GG  A++P     WLE
Sbjct: 383 EHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLE 420

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene , lanosterol , cycloartenol, amyrin, lupeol and isomultiflorenol. Length = 621

>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 9   EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           E++   R  DAV +ILS Q+E GG   +E +R P  LE
Sbjct: 395 ERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLE 432

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol , and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol. Length = 634

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	57
PLN02993	763	lupeol synthase	99.8
PLN03012	759	Camelliol C synthase	99.8
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.64
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.55
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.41
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.15
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.13
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	98.79
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	98.15
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	98.04
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	97.96
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	97.93
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	97.91
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	97.74
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	97.59
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	97.55
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	97.36
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	97.25
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	97.23
PLN03012	759	Camelliol C synthase	97.23
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	97.21
PLN02993	763	lupeol synthase	97.1
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	97.05
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	97.01
cd00688	300	ISOPREN_C2_like This group contains class II terpe	97.01
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	96.97
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	96.88
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	96.62
cd00688	300	ISOPREN_C2_like This group contains class II terpe	96.55
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	96.4
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	96.01
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	95.88
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	95.83
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	95.66
PF07678	246	A2M_comp: A-macroglobulin complement component; In	95.36
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	95.3
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	95.25
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	94.94
PF07678	246	A2M_comp: A-macroglobulin complement component; In	94.83
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	94.63
PLN02710	439	farnesyltranstransferase subunit beta	94.47
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	94.36
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	94.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	93.65
KOG0366	329	consensus Protein geranylgeranyltransferase type I	93.32
COG1689	274	Uncharacterized protein conserved in archaea [Func	93.15
PLN02710	439	farnesyltranstransferase subunit beta	92.96
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	92.75
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	90.47
KOG0366	329	consensus Protein geranylgeranyltransferase type I	90.01
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	88.17
COG2373	1621	Large extracellular alpha-helical protein [General	87.54
KOG3760	594	consensus Heparan sulfate-glucuronic acid C5-epime	83.91
PF15144	88	DUF4576: Domain of unknown function (DUF4576)	82.11
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	80.82

>PLN02993 lupeol synthase

Probab=99.80  E-value=2.4e-20  Score=143.75  Aligned_cols=55  Identities=51%  Similarity=1.002  Sum_probs=52.3

Q ss_pred             CCccccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428            2 MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS   56 (57)
Q Consensus         2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~   56 (57)
                      +|++++|+++.+++|+|||||||+|||+||||+|||++|++.|||+|||+|+|+.
T Consensus       501 ~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~  555 (763)
T PLN02993        501 MPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFAN  555 (763)
T ss_pred             CccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcC
Confidence            5678899999999999999999999999999999999999999999999999864

>PLN03012 Camelliol C synthase

Probab=99.80  E-value=2.6e-20  Score=143.53  Aligned_cols=55  Identities=47%  Similarity=0.868  Sum_probs=52.5

Q ss_pred             CCccccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428            2 MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS   56 (57)
Q Consensus         2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~   56 (57)
                      ++++++|++++++|++|||||||+|||+||||+|||++|++.|||+|||+|+|..
T Consensus       501 ~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d  555 (759)
T PLN03012        501 IAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFAD  555 (759)
T ss_pred             cccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcC
Confidence            5678899999999999999999999999999999999999999999999999974

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.64  E-value=8.7e-17  Score=123.99  Aligned_cols=56  Identities=50%  Similarity=0.808  Sum_probs=54.0

Q ss_pred             CCCccccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428            1 MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS   56 (57)
Q Consensus         1 ~~~~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~   56 (57)
                      +||.++||++|++|||+||||.||+||+++||+++||+.|+..|||+|||+|+|..
T Consensus       499 ~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~  554 (760)
T KOG0497|consen  499 SMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGD  554 (760)
T ss_pred             CCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccc
Confidence            58999999999999999999999999999999999999999999999999999964

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.55  E-value=2e-15  Score=113.82  Aligned_cols=46  Identities=37%  Similarity=0.550  Sum_probs=43.9

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCcccccc
Q 035428           10 KMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTK   55 (57)
Q Consensus        10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~   55 (57)
                      +++++++++||+|||+|||+||||++||+++++.|||+|||+|+|.
T Consensus       396 ~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~  441 (634)
T TIGR03463       396 RVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFS  441 (634)
T ss_pred             cccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhc
Confidence            4778999999999999999999999999999999999999999986

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.41  E-value=1.2e-13  Score=104.02  Aligned_cols=48  Identities=40%  Similarity=0.674  Sum_probs=45.0

Q ss_pred             CCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428            9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS   56 (57)
Q Consensus         9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~   56 (57)
                      +++..+++++||+||++|||+||||++||++++..|||+|||+|+|..
T Consensus       383 ~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d  430 (621)
T TIGR01787       383 EHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGD  430 (621)
T ss_pred             ccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhcc
Confidence            567889999999999999999999999999999999999999999864

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.15  E-value=2.4e-11  Score=92.05  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             CCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428            9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST   52 (57)
Q Consensus         9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae   52 (57)
                      ++...+++.+||+|||+|||+||||++||++++..|++++|.+.
T Consensus       398 ~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d  441 (635)
T TIGR01507       398 ERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCD  441 (635)
T ss_pred             cccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccc
Confidence            34556899999999999999999999999999999999999764

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.13  E-value=2.4e-11  Score=91.08  Aligned_cols=48  Identities=42%  Similarity=0.687  Sum_probs=44.3

Q ss_pred             CCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCcccccc
Q 035428            8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTK   55 (57)
Q Consensus         8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~   55 (57)
                      |..+..+++.+||+||++|||+||||++||+.++..|++.++|+|+|.
T Consensus       394 ~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g  441 (634)
T cd02892         394 GEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFG  441 (634)
T ss_pred             chhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhc
Confidence            355778999999999999999999999999999999999999999885

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=98.79  E-value=4.6e-09  Score=74.54  Aligned_cols=44  Identities=16%  Similarity=0.314  Sum_probs=37.7

Q ss_pred             CCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428            8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST   52 (57)
Q Consensus         8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae   52 (57)
                      +++.-.+++.+||+|||+||++||||+.|++.++ .|+++|...+
T Consensus        61 ~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~-~Y~~~ITfND  104 (290)
T TIGR02474        61 KNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKG-GYSDAITYND  104 (290)
T ss_pred             CchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcC-CcccccccCc
Confidence            4566678999999999999999999999999887 7888776543

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=98.15  E-value=1.1e-06  Score=66.58  Aligned_cols=42  Identities=24%  Similarity=0.488  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccc
Q 035428           13 PERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYT   54 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f   54 (57)
                      ..++..+++|+++|||+.|||++||..+...|++.||+++++
T Consensus       280 ~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~  321 (517)
T COG1657         280 LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVK  321 (517)
T ss_pred             hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcc
Confidence            346777999999999999999999999999999999999886

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=98.04  E-value=3.9e-06  Score=57.20  Aligned_cols=38  Identities=47%  Similarity=0.858  Sum_probs=33.1

Q ss_pred             CCCChHHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428            9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE   46 (57)
Q Consensus         9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le   46 (57)
                      ..+..+.+.+|++||++.|++||||.+|++.++..|++
T Consensus       112 ~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~  149 (348)
T cd02889         112 KKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLE  149 (348)
T ss_pred             chhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHh
Confidence            45678899999999999999999999999887777754

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=97.96  E-value=7.3e-06  Score=54.28  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHhhcCCCCcccccCC-CCcccccc
Q 035428           13 PERFYDAVNYILSMQSETGGVPAWEPR-RAPSWLEV   47 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~aafE~~-r~~~~Le~   47 (57)
                      .+++.+|+++|++|||+||||+.|... .+..|+..
T Consensus        48 ~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta   83 (282)
T cd02891          48 LEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTA   83 (282)
T ss_pred             HHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHH
Confidence            467999999999999999999999876 77888653

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=97.93  E-value=2.3e-06  Score=49.83  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHHHHhhcCCCCcc
Q 035428           13 PERFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~a   34 (57)
                      .+.+.+||+||+++||+||||+
T Consensus        91 ~~~~~~a~~~l~~~Q~~dGg~~  112 (113)
T PF13249_consen   91 EEAVRKAVDWLLSCQNPDGGWG  112 (113)
T ss_dssp             HTTHCCHHHHHHHTB-TTSSB-
T ss_pred             cHHHHHHHHHHHHhcCCCCCCC
Confidence            4678899999999999999996

...

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=97.91  E-value=1.1e-05  Score=54.84  Aligned_cols=32  Identities=13%  Similarity=0.088  Sum_probs=28.0

Q ss_pred             CCCChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428            9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRR   40 (57)
Q Consensus         9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r   40 (57)
                      ..++++.+.+|++||+++|++||||+++++..
T Consensus        97 ~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~  128 (292)
T cd02897          97 IYIDENVLQQALTWLSSHQKSNGCFREVGRVF  128 (292)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence            35778899999999999999999999887643

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=97.74  E-value=1.7e-05  Score=46.15  Aligned_cols=17  Identities=35%  Similarity=0.651  Sum_probs=15.3

Q ss_pred             HHHHHHhhcCCCCcccc
Q 035428           20 VNYILSMQSETGGVPAW   36 (57)
Q Consensus        20 Vd~lLsmQN~dGG~aaf   36 (57)
                      |+||++.||+||||+.+
T Consensus         1 v~~L~~~Q~~dGgw~~~   17 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF   17 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS
T ss_pred             CHhhHHHcCCCCCCcCC
Confidence            79999999999999986

...

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=97.59  E-value=6.7e-05  Score=39.11  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHhhcCCCCccccc
Q 035428           16 FYDAVNYILSMQSETGGVPAWE   37 (57)
Q Consensus        16 l~daVd~lLsmQN~dGG~aafE   37 (57)
                      ..++++||++-|+.||||+..-
T Consensus         3 ~~~~~~~l~~~Q~~dGGf~~~~   24 (44)
T PF00432_consen    3 VEKLIRFLLSCQNPDGGFGGRP   24 (44)
T ss_dssp             HHHHHHHHHHTBBTTSSBBSST
T ss_pred             HHHHHHHHHHHCCCCCCCCCCC
Confidence            4679999999999999999763

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=97.55  E-value=3.1e-05  Score=45.20  Aligned_cols=29  Identities=28%  Similarity=0.393  Sum_probs=18.1

Q ss_pred             CCCCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428            8 GEKMEPERFYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus         8 g~~i~~~rl~daVd~lLsmQN~dGG~aaf   36 (57)
                      ++.-..+++.+|++||++.|++||||+-.
T Consensus        40 ~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~   68 (109)
T PF13243_consen   40 GDAAVDEAIKKAIDWLLSHQNPDGGWGYS   68 (109)
T ss_dssp             -TS-SSBSSHHHHHHHHH---TTS--S-T
T ss_pred             CCCCcHHHHHHHHHHHHHhcCCCCCCCCc
Confidence            44456678999999999999999999955

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=97.36  E-value=0.00016  Score=49.83  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=25.9

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCcccccC
Q 035428           10 KMEPERFYDAVNYILSMQSETGGVPAWEP   38 (57)
Q Consensus        10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~   38 (57)
                      .++++.|.+|++||+++|++||+|....+
T Consensus        99 ~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~  127 (297)
T cd02896          99 PVDQNVICGSVNWLISNQKPDGSFQEPSP  127 (297)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCeeCCCCC
Confidence            57889999999999999999999997543

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=97.25  E-value=0.00029  Score=48.60  Aligned_cols=34  Identities=24%  Similarity=0.502  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV   47 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~   47 (57)
                      +.|.+|+.-+++||+.||||++|....+..||.-
T Consensus        52 ~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA   85 (297)
T cd02896          52 KYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTA   85 (297)
T ss_pred             HHHHHHHHHHHhccCCCCCccCCCCCCcchhhHH
Confidence            4599999999999999999999988888888653

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=97.23  E-value=0.00026  Score=54.20  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             cCCCCChHHHHHHHHHHHHhhcCCCCcc
Q 035428            7 VGEKMEPERFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus         7 ~g~~i~~~rl~daVd~lLsmQN~dGG~a   34 (57)
                      +|.....+.+.+||+||++.||+||||+
T Consensus       512 ~g~~~~~~~i~rAv~wL~~~Q~~DGGWg  539 (635)
T TIGR01507       512 VGIDTREPYIQKALAWLESHQNPDGGWG  539 (635)
T ss_pred             cCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence            3555667899999999999999999997

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>PLN03012 Camelliol C synthase

Probab=97.23  E-value=0.00025  Score=55.87  Aligned_cols=40  Identities=18%  Similarity=0.398  Sum_probs=29.4

Q ss_pred             cCCCCCh-HHHHHHHHHHHHhhcCCCCccc-ccCCCCccccc
Q 035428            7 VGEKMEP-ERFYDAVNYILSMQSETGGVPA-WEPRRAPSWLE   46 (57)
Q Consensus         7 ~g~~i~~-~rl~daVd~lLsmQN~dGG~aa-fE~~r~~~~Le   46 (57)
                      +|+.... +++.+||+||++.||+||||+- |..-.++.|..
T Consensus       631 ~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~  672 (759)
T PLN03012        631 AGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA  672 (759)
T ss_pred             hCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence            4555444 8999999999999999999984 55444444443

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=97.21  E-value=0.00031  Score=47.76  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHhhcCCCCcccccCC--CCcccccc
Q 035428           15 RFYDAVNYILSMQSETGGVPAWEPR--RAPSWLEV   47 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aafE~~--r~~~~Le~   47 (57)
                      .|.+++..+++||+.||||+.|-..  .+..||.-
T Consensus        50 ~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa   84 (292)
T cd02897          50 FLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTA   84 (292)
T ss_pred             HHHHHHHHHHhccCCCCCeecccCCCCCcchhhHH
Confidence            3888889999999999999999543  66777753

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PLN02993 lupeol synthase

Probab=97.10  E-value=0.00043  Score=54.58  Aligned_cols=39  Identities=15%  Similarity=0.388  Sum_probs=28.1

Q ss_pred             cCCCCCh-HHHHHHHHHHHHhhcCCCCccc-ccCCCCcccc
Q 035428            7 VGEKMEP-ERFYDAVNYILSMQSETGGVPA-WEPRRAPSWL   45 (57)
Q Consensus         7 ~g~~i~~-~rl~daVd~lLsmQN~dGG~aa-fE~~r~~~~L   45 (57)
                      +|+..+. +.+.+||+|||+.||+||||+. |....++.+.
T Consensus       631 ~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~  671 (763)
T PLN02993        631 AGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYI  671 (763)
T ss_pred             cCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccc
Confidence            4555444 7899999999999999999973 4433333333

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=97.05  E-value=0.00014  Score=42.39  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhcCCCCcc
Q 035428           16 FYDAVNYILSMQSETGGVP   34 (57)
Q Consensus        16 l~daVd~lLsmQN~dGG~a   34 (57)
                      |.+||+||++-|++||||.
T Consensus         1 i~~~~~~l~~~Q~~dG~W~   19 (109)
T PF13243_consen    1 IKRAAEWLLSQQNPDGSWG   19 (109)
T ss_dssp             -------------------
T ss_pred             Ccccccccccccccccccc
Confidence            5689999999999999995

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=97.01  E-value=0.00069  Score=46.18  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=22.2

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCccc
Q 035428           12 EPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ..+.+.+|++||++.||.||||.+
T Consensus       295 ~~~~v~~a~~wL~~~Q~~dG~f~~  318 (348)
T cd02889         295 DSEAVKRGVKYLLNTQQEDGDWPQ  318 (348)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcCC
Confidence            567899999999999999999987

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=97.01  E-value=0.00081  Score=42.74  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=26.0

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428           10 KMEPERFYDAVNYILSMQSETGGVPAWEPR   39 (57)
Q Consensus        10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~~   39 (57)
                      ....+.+.++++||+++|+.||||+.+...
T Consensus        48 ~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~   77 (300)
T cd00688          48 DKADENIEKGIQRLLSYQLSDGGFSGWGGN   77 (300)
T ss_pred             ccchHHHHHHHHHHHhccCCCCCccCCCCC
Confidence            345678999999999999999999988654

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=96.97  E-value=0.00071  Score=45.69  Aligned_cols=33  Identities=27%  Similarity=0.537  Sum_probs=29.2

Q ss_pred             cccCCCCChHHHHHHHHHHHHhh-cCCCCccccc
Q 035428            5 EIVGEKMEPERFYDAVNYILSMQ-SETGGVPAWE   37 (57)
Q Consensus         5 ~~~g~~i~~~rl~daVd~lLsmQ-N~dGG~aafE   37 (57)
                      .++|..++.+...++++||+++| |+||||+...
T Consensus        38 ~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~   71 (286)
T cd02890          38 DLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGP   71 (286)
T ss_pred             HHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence            45677788899999999999999 9999999874

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=96.88  E-value=0.00087  Score=51.29  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=25.2

Q ss_pred             cCCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428            7 VGEKMEPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus         7 ~g~~i~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      +|.....+.+.+||+||++-||+||||+.
T Consensus       518 ~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~  546 (634)
T TIGR03463       518 AGASPDDMALQRAAAWLRSYQRADGGWGE  546 (634)
T ss_pred             cCCCcCcHHHHHHHHHHHHccCCCCCccC
Confidence            46666778999999999999999999963

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=96.62  E-value=0.0017  Score=49.53  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=22.5

Q ss_pred             CCCCCh-HHHHHHHHHHHHhhcCCCCcc
Q 035428            8 GEKMEP-ERFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus         8 g~~i~~-~rl~daVd~lLsmQN~dGG~a   34 (57)
                      |+.... +.+.+|++||++.||+||||+
T Consensus       502 G~~~~~~~~i~rA~~~L~~~Q~~DGGWg  529 (621)
T TIGR01787       502 GRTYRNCPEVQKACDWLLSRQMPDGGWG  529 (621)
T ss_pred             CCcccCCHHHHHHHHHHHhhcCCCCCCC
Confidence            444333 789999999999999999997

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=96.55  E-value=0.0025  Score=40.47  Aligned_cols=29  Identities=31%  Similarity=0.507  Sum_probs=26.0

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428           11 MEPERFYDAVNYILSMQSETGGVPAWEPR   39 (57)
Q Consensus        11 i~~~rl~daVd~lLsmQN~dGG~aafE~~   39 (57)
                      +..+.+.++++||++.|+.||||..+...
T Consensus       101 ~~~~~~~~~~~~l~~~q~~dG~~~~~~~~  129 (300)
T cd00688         101 VDRIDLARALNWLLSLQNEDGGFREDGPG  129 (300)
T ss_pred             cCHHHHHHHHHHHHHccCCCCCeeeecCC
Confidence            66788999999999999999999988754

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=96.40  E-value=0.0022  Score=48.66  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=29.6

Q ss_pred             ccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCC
Q 035428            6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRA   41 (57)
Q Consensus         6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~   41 (57)
                      ++|..++++...+.++||++.||+||||+-|....+
T Consensus        38 ~~~~~~~~~~~~~~~~~l~~~q~~dGgw~~~~~~~~   73 (634)
T cd02892          38 ILGIPIDPEHRKEIARYLRNHQNPDGGWGLHHEGPS   73 (634)
T ss_pred             HhcCCCCHHHHHHHHHHHHHhccCCCCccCCCCCCc
Confidence            356666788888999999999999999999874433

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=96.01  E-value=0.0049  Score=43.44  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHhhcCCCCcccccC
Q 035428           15 RFYDAVNYILSMQSETGGVPAWEP   38 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aafE~   38 (57)
                      ...++++||+++|+++|||++++.
T Consensus        57 ~~~~~i~~l~~cq~~~GGF~~~~~   80 (316)
T PLN03201         57 DRDEVVSWVMRCQHESGGFGGNTG   80 (316)
T ss_pred             cHHHHHHHHHHhcCCCCCcCCCCC
Confidence            347899999999999999999864

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=95.88  E-value=0.0085  Score=42.81  Aligned_cols=30  Identities=33%  Similarity=0.631  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHHhhcCCCCcccccCCCCc
Q 035428           13 PERFYDAVNYILSMQSETGGVPAWEPRRAP   42 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~   42 (57)
                      .+++.+||++||..|-+||||+=|=+.++.
T Consensus        61 ~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~   90 (289)
T PF09492_consen   61 REAFLKGLDYLLKAQYPNGGWPQFYPLRGG   90 (289)
T ss_dssp             HHHHHHHHHHHHHHS-TTS--BSECS--SG
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCccCCCCCC
Confidence            467899999999999999999998776655

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=95.83  E-value=0.0073  Score=40.77  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             hHHHHHHHHHHHHhhcCCCCccc
Q 035428           13 PERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      .....++++||+++||.||||+.
T Consensus       145 ~~~~~~~~~~l~~~Q~~dGGf~~  167 (286)
T cd02890         145 DIDKEKLIDYILSCQNYDGGFGG  167 (286)
T ss_pred             hhhHHHHHHHHHHhCCCCCCcCC
Confidence            45688999999999999999985

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=95.66  E-value=0.01  Score=41.41  Aligned_cols=31  Identities=19%  Similarity=0.440  Sum_probs=25.8

Q ss_pred             ccCCCCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428            6 IVGEKMEPERFYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus         6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aaf   36 (57)
                      ++|..+......+.++||+++|+++|||+.-
T Consensus        39 lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~   69 (299)
T cd02893          39 LLGEELDQSYADDVISFLRRCQNPSGGFGGG   69 (299)
T ss_pred             HhCCcccHHHHHHHHHHHHHhcCCCCCCCCC
Confidence            4566566666789999999999999999984

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=95.36  E-value=0.013  Score=39.57  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=23.2

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCcccccC
Q 035428           10 KMEPERFYDAVNYILSMQSETGGVPAWEP   38 (57)
Q Consensus        10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~   38 (57)
                      .|+++-|.+|++||++-|++||.|..-.+
T Consensus        45 ~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~   73 (246)
T PF07678_consen   45 FVDENVICRAVKWLISQQQPDGSFEEDGP   73 (246)
T ss_dssp             -CEHHHHHHHHHHHHHHBETTSEB--SSS
T ss_pred             cCCHHHHHHHHHHHHHhhcCCCccccCCC
Confidence            47889999999999999999999965433

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=95.30  E-value=0.017  Score=40.24  Aligned_cols=24  Identities=38%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCccc
Q 035428           12 EPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      +++.+.++++||++.||.||||+.
T Consensus       144 ~~~~~~~~~~~l~~cQ~~dGGF~~  167 (299)
T cd02893         144 TDELFEGVAEYILSCQTYEGGFGG  167 (299)
T ss_pred             chhhHHHHHHHHHHcCCCCCCcCC
Confidence            455678999999999999999985

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=95.25  E-value=0.014  Score=40.08  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ....++++||+++|+.||||+.
T Consensus       148 i~~~~~~~~l~~~q~~dGGF~~  169 (287)
T cd02894         148 IDVDKAVDYLLSCYNFDGGFGC  169 (287)
T ss_pred             hhHHHHHHHHHHcCCCCCCcCC
Confidence            3468899999999999999975

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=94.94  E-value=0.023  Score=39.06  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhhcCCCCccc
Q 035428           15 RFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ...++++||+++||+||||+.
T Consensus       101 ~~~~~~~~i~~~q~~dGgf~~  121 (287)
T cd02894         101 NKEKIAKFIKGLQNEDGSFSG  121 (287)
T ss_pred             HHHHHHHHHHHHcCCCCCeec
Confidence            468899999999999999975

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=94.83  E-value=0.021  Score=38.49  Aligned_cols=29  Identities=21%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             HHHHHHHhhcCCCCcccc-cCCCCcccccc
Q 035428           19 AVNYILSMQSETGGVPAW-EPRRAPSWLEV   47 (57)
Q Consensus        19 aVd~lLsmQN~dGG~aaf-E~~r~~~~Le~   47 (57)
                      |-.=+|++|++||||++| ....+..||.-
T Consensus         2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTA   31 (246)
T PF07678_consen    2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTA   31 (246)
T ss_dssp             HHHHHHTTB-TTSSBBSSTTTSSBBHHHHH
T ss_pred             chHHHhcCCCCCCCeeccccCCcccHHHHH
Confidence            556789999999999999 66677777753

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=94.63  E-value=0.035  Score=39.12  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ..+.++++||++.||.||||+.
T Consensus       152 i~~~~~~~~i~scq~~dGGF~~  173 (316)
T PLN03201        152 INVEKAVDYIVSCKNFDGGFGC  173 (316)
T ss_pred             hHHHHHHHHHHHhcCCCCCcCC
Confidence            4568899999999999999995

>PLN02710 farnesyltranstransferase subunit beta

Probab=94.47  E-value=0.035  Score=41.54  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=27.4

Q ss_pred             cccCCCCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428            5 EIVGEKMEPERFYDAVNYILSMQSETGGVPAWE   37 (57)
Q Consensus         5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE   37 (57)
                      .++|+.++++.-.+.|+||.++|+++|||+..-
T Consensus        83 ~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~p  115 (439)
T PLN02710         83 ALLGESLDDELENDTIDFLSRCQDPNGGYGGGP  115 (439)
T ss_pred             HHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCC
Confidence            356777777777889999999999999998743

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=94.36  E-value=0.051  Score=35.91  Aligned_cols=31  Identities=16%  Similarity=0.321  Sum_probs=26.7

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428           10 KMEPERFYDAVNYILSMQSETGGVPAWEPRR   40 (57)
Q Consensus        10 ~i~~~rl~daVd~lLsmQN~dGG~aafE~~r   40 (57)
                      .++++.+.+|++||++.|+.||+|..+....
T Consensus        97 ~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~  127 (282)
T cd02891          97 DVDENVLARALGWLVPQQKEDGSFRELGPVI  127 (282)
T ss_pred             CCCHHHHHHHHHHHHhccCCCCCcCCCCCcc
Confidence            4677889999999999999999998876543

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=94.00  E-value=0.04  Score=43.93  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aaf   36 (57)
                      ..+.+||++||+-||++|||+-+
T Consensus       638 ~~irka~~Fll~~Q~~~GGWgEs  660 (760)
T KOG0497|consen  638 EAIRKACDFLLSKQNPDGGWGES  660 (760)
T ss_pred             HHHHHHHHHHHhhhcccCCCccc
Confidence            56899999999999999999954

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=93.65  E-value=0.058  Score=37.85  Aligned_cols=22  Identities=14%  Similarity=0.141  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhhcCCCCccccc
Q 035428           16 FYDAVNYILSMQSETGGVPAWE   37 (57)
Q Consensus        16 l~daVd~lLsmQN~dGG~aafE   37 (57)
                      -.+.++||.++|+.||||+.-.
T Consensus       114 r~~i~~~l~~~q~~dGgF~~~~  135 (307)
T cd02895         114 RKAILNFLSKLQLPDGSFGSVL  135 (307)
T ss_pred             HHHHHHHHHHhCCCCCCccCCc
Confidence            4668999999999999999753

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.32  E-value=0.072  Score=38.83  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             HHHHHHHHHhhcCCCCcccccC
Q 035428           17 YDAVNYILSMQSETGGVPAWEP   38 (57)
Q Consensus        17 ~daVd~lLsmQN~dGG~aafE~   38 (57)
                      .+-|.|+++.||++|||+.++-
T Consensus        69 eeiv~~v~~C~~~~GGfa~~~G   90 (329)
T KOG0366|consen   69 EEIVSFVLSCQHEDGGFAGCPG   90 (329)
T ss_pred             HHHHHHHHheecCCCCcCCCCC
Confidence            4579999999999999999875

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.15  E-value=0.049  Score=38.86  Aligned_cols=20  Identities=30%  Similarity=0.572  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhhcCCCCcc
Q 035428           15 RFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~a   34 (57)
                      ++.+-+.+|.|+||.||||-
T Consensus       229 ~i~~~~rFI~slqN~nGGFR  248 (274)
T COG1689         229 CISDHIRFIRSLQNQNGGFR  248 (274)
T ss_pred             CchHHHHHHHHhhcCCCCee
Confidence            47788999999999999983

>PLN02710 farnesyltranstransferase subunit beta

Probab=92.96  E-value=0.095  Score=39.29  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=21.5

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCcccc
Q 035428           11 MEPERFYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        11 i~~~rl~daVd~lLsmQN~dGG~aaf   36 (57)
                      ++.+-....++||++.|+.+|||+.-
T Consensus       188 l~~~~~e~~~~~I~scQ~~dGGF~g~  213 (439)
T PLN02710        188 LDDELVKGVGDYILSCQTYEGGIGGE  213 (439)
T ss_pred             CchhhHHHHHHHHHHhCCCCCCCCCC
Confidence            34456778999999999999999953

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.75  E-value=0.079  Score=39.00  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=23.2

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428           10 KMEPERFYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        10 ~i~~~rl~daVd~lLsmQN~dGG~aaf   36 (57)
                      .++.+-..-+||||.+.||=+|||++-
T Consensus       170 ~~~~~~~e~~vdyl~kCqnyeGGFg~~  196 (342)
T COG5029         170 DLDKELFEGAVDYLKKCQNYEGGFGLC  196 (342)
T ss_pred             hcchhhhHHHHHHHHHhhccCCcccCC
Confidence            456677788999999999999999974

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=90.47  E-value=0.3  Score=34.29  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=21.2

Q ss_pred             ChHHHHHHHHHHHHhh----cCCCCccccc
Q 035428           12 EPERFYDAVNYILSMQ----SETGGVPAWE   37 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQ----N~dGG~aafE   37 (57)
                      +...-.+.++||.++|    +++|||+..-
T Consensus        47 ~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~   76 (307)
T cd02895          47 LVEEKDDIIEWIYSLQVLSNLPRGGFRGSS   76 (307)
T ss_pred             cHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Confidence            3444577899999999    9999999864

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.01  E-value=0.21  Score=36.51  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCcccc
Q 035428           11 MEPERFYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        11 i~~~rl~daVd~lLsmQN~dGG~aaf   36 (57)
                      ++.-....||+|+++.-|-||||++-
T Consensus       159 ld~~nve~aVd~~~~CyN~DGGFG~~  184 (329)
T KOG0366|consen  159 LDTINVEKAVDFVLSCYNFDGGFGCR  184 (329)
T ss_pred             HHHhhHHHHHHHHHhhcccCCCcCCC
Confidence            44556788999999999999999864

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.17  E-value=0.49  Score=35.66  Aligned_cols=31  Identities=16%  Similarity=0.425  Sum_probs=28.6

Q ss_pred             cccCCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428            5 EIVGEKMEPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus         5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ++.++.++++-..++|++|-..|.+.|||+.
T Consensus       111 ~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgG  141 (423)
T KOG0365|consen  111 ALLDEWLDDDVKENAIDFLFTCQGPEGGFGG  141 (423)
T ss_pred             HHhcCcCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence            5778899999999999999999999999973

>COG2373 Large extracellular alpha-helical protein [General function prediction only]

Probab=87.54  E-value=0.55  Score=40.18  Aligned_cols=35  Identities=29%  Similarity=0.563  Sum_probs=29.4

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCcccccC-CCCccccc
Q 035428           12 EPERFYDAVNYILSMQSETGGVPAWEP-RRAPSWLE   46 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aafE~-~r~~~~Le   46 (57)
                      -.+++..|+--|++||+.+|+|+-|.. ..+..||.
T Consensus      1197 ~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~lt 1232 (1621)
T COG2373        1197 LRARLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLT 1232 (1621)
T ss_pred             HHHHHHHHHHHHHhhhhcCCceeecCCCCCcchhhh
Confidence            356899999999999999999999998 55556654

>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]

Probab=83.91  E-value=0.82  Score=35.35  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      .+.|+|.|||.-=||+.|||+-
T Consensus       380 aaFyaAadWlV~NQd~kGGW~~  401 (594)
T KOG3760|consen  380 AAFYAAADWLVKNQDDKGGWSV  401 (594)
T ss_pred             HHHHHHHHHHhhCCCCCCCCcc
Confidence            4799999999999999999984

>PF15144 DUF4576: Domain of unknown function (DUF4576)

Probab=82.11  E-value=2  Score=26.19  Aligned_cols=31  Identities=23%  Similarity=0.383  Sum_probs=26.7

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCcccccCCCCc
Q 035428           12 EPERFYDAVNYILSMQSETGGVPAWEPRRAP   42 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aafE~~r~~   42 (57)
                      ..+-+..||++||.-.++.-||.-||-+++.
T Consensus        54 GteIiEnAVefiLrSMtR~tgF~E~~dk~ge   84 (88)
T PF15144_consen   54 GTEIIENAVEFILRSMTRSTGFMEFEDKQGE   84 (88)
T ss_pred             hHHHHHHHHHHHHHHhhcccCceecCCCCCC
Confidence            4567999999999999999999999976654

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=80.82  E-value=0.7  Score=35.58  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.0

Q ss_pred             hHHHHHHHHHHHHhhcCCCCccc
Q 035428           13 PERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ..++.+|+.|||++|..+|-|-.
T Consensus       351 ~~~i~~a~e~LL~~Q~~~GsW~g  373 (517)
T COG1657         351 GQPIERALEWLLSDQEPDGSWYG  373 (517)
T ss_pred             CCcccHHHhhhhhhccccCceee
Confidence            46689999999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	57
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	4e-09
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	2e-08

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732

 Score = 49.1 bits (116), Expect = 4e-09
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 2   MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
                V E +  ER  DAV  +L+M++  GG   +E +R    LE
Sbjct: 469 EKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLE 513

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 46.8 bits (110), Expect = 2e-08
 Identities = 8/46 (17%), Positives = 16/46 (34%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           +    +  E+   +       +I+ MQS  GG  A++         
Sbjct: 385 LNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPN 430

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	57
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.28
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	99.08
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.02
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	98.58
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	98.57
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	98.41
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	98.37
2wy7_A	310	Complement C3D fragment; immune system, immune res	98.3
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	98.1
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	98.04
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	97.83
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	97.53
2hr0_B	915	Complement C3 alpha' chain; complement component C	97.53
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	97.02
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	96.79
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	96.61
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	96.48
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	96.44
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	96.24
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	96.24
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	95.89
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	95.85
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	95.77
2wy7_A	310	Complement C3D fragment; immune system, immune res	95.51
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	94.73
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	93.92
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	92.14
3prx_B	1642	Cobra venom factor; immune system, complement, imm	92.11
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	92.04
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	91.19
2hr0_B	915	Complement C3 alpha' chain; complement component C	88.88
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	86.52
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	86.36
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	83.93
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	83.76
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	83.07
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	82.66
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	81.11

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.28  E-value=2.8e-12  Score=96.53  Aligned_cols=49  Identities=31%  Similarity=0.458  Sum_probs=46.2

Q ss_pred             CCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428            8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS   56 (57)
Q Consensus         8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~   56 (57)
                      |+++..+++.+||+||+++||+||||++||++++..|++.+||+|+|..
T Consensus       475 g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~  523 (732)
T 1w6k_A          475 TEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGD  523 (732)
T ss_dssp             CSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSS
T ss_pred             cchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccc
Confidence            6678899999999999999999999999999999999999999998864

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=99.08  E-value=6.3e-11  Score=84.17  Aligned_cols=39  Identities=18%  Similarity=0.373  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428           13 PERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST   52 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae   52 (57)
                      .+++.+||+|||+||++||||++|++++ ..|+++|++++
T Consensus        96 ~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~-~~Yl~~IpFnD  134 (332)
T 1gxm_A           96 RDAVRKAANFLVNSQYSTGALPQFYPLK-GGYSDHATFND  134 (332)
T ss_dssp             HHHHHHHHHHHHHHCCTTSCCBSEESCC-SGGGGSEECGG
T ss_pred             HHHHHHHHHHHHhccCCCCCccccCCCc-ccccccCCcch
Confidence            5789999999999999999999999997 88999998875

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=99.02  E-value=1.6e-10  Score=83.83  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428           12 EPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST   52 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae   52 (57)
                      -.+++.+||+|||+||++||||++|++++ ..|+++|++++
T Consensus       173 y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~IpFnD  212 (408)
T 1r76_A          173 YRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAITYND  212 (408)
T ss_dssp             HHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEECGG
T ss_pred             HHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCCcCc
Confidence            35789999999999999999999999999 68999998765

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=98.58  E-value=2.4e-08  Score=69.12  Aligned_cols=33  Identities=21%  Similarity=0.480  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE   46 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le   46 (57)
                      +++.+|++|||+|||+||||++|+..++..|+.
T Consensus        91 ~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lT  123 (367)
T 1hzf_A           91 DLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLT  123 (367)
T ss_dssp             HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCeeccCCCCCcHHHH
Confidence            479999999999999999999999989988876

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=98.57  E-value=4.3e-08  Score=72.20  Aligned_cols=41  Identities=20%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCcc
Q 035428           11 MEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITS   51 (57)
Q Consensus        11 i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpa   51 (57)
                      +..+++.+|++||+++||+||||++|+..++..|++.+|+.
T Consensus       395 ~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~  435 (631)
T 2sqc_A          395 RRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFS  435 (631)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTC
T ss_pred             hhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccc
Confidence            34678999999999999999999999999999999988753

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=98.41  E-value=1.3e-07  Score=68.15  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=31.5

Q ss_pred             cccCCCCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428            5 EIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPR   39 (57)
Q Consensus         5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~   39 (57)
                      +++|.+++.++++++|+||++|||+||||++|+-.
T Consensus       112 ~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~  146 (437)
T 2h6f_B          112 ELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQ  146 (437)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTC
T ss_pred             HHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCC
Confidence            46788889999999999999999999999999753

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=98.37  E-value=1.8e-07  Score=61.80  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV   47 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~   47 (57)
                      +.+.+|+.++|+||++||||++|+...+..||.-
T Consensus        38 ~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa   71 (277)
T 1qqf_A           38 ELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTA   71 (277)
T ss_dssp             HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCccccCCCCccHHHHH
Confidence            3588899999999999999999999888888763

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=98.30  E-value=3e-07  Score=61.83  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV   47 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~   47 (57)
                      +.+.+|+.++|+||++||||++|+...+..|+.-
T Consensus        54 ~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa   87 (310)
T 2wy7_A           54 ELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTA   87 (310)
T ss_dssp             HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHH
Confidence            3588999999999999999999999888888763

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=98.10  E-value=1.7e-06  Score=64.36  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             cccCCCCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428            5 EIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPR   39 (57)
Q Consensus         5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~   39 (57)
                      +++|.+++.+..+++|+||+++||+||||+.++..
T Consensus       100 ~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~  134 (520)
T 3q7a_B          100 DLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPAN  134 (520)
T ss_dssp             HHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTT
T ss_pred             HHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence            57888899999999999999999999999999843

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=98.04  E-value=1.5e-06  Score=61.70  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhhc---------CCCCcccccCCCCcccccccCccc
Q 035428           16 FYDAVNYILSMQS---------ETGGVPAWEPRRAPSWLEVKITST   52 (57)
Q Consensus        16 l~daVd~lLsmQN---------~dGG~aafE~~r~~~~Le~lnpae   52 (57)
                      ..++|+||++|||         ++|||++|+..+.+. .++.||+|
T Consensus        69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~-~d~~~~~~  113 (377)
T 1n4q_B           69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPF-NPSKNPGT  113 (377)
T ss_dssp             HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCC-CSSCSCCC
T ss_pred             HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCCh-hhhccccc
Confidence            6789999999999         799999999987665 57777664

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=97.83  E-value=7.3e-06  Score=63.90  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE   46 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le   46 (57)
                      +.+.+|+++||+||++||||++|+..++..||.
T Consensus       872 ~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lT  904 (1325)
T 2pn5_A          872 NLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLT  904 (1325)
T ss_dssp             HHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCeeccCCCCCCeeeh
Confidence            358899999999999999999999989998975

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=97.53  E-value=3.5e-05  Score=61.59  Aligned_cols=32  Identities=13%  Similarity=0.300  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhhcCCCCcccccC----CCCccccc
Q 035428           15 RFYDAVNYILSMQSETGGVPAWEP----RRAPSWLE   46 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aafE~----~r~~~~Le   46 (57)
                      .|.+|++|||+||++||||++|..    ..+..||.
T Consensus       984 ~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlT 1019 (1451)
T 4acq_A          984 YLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLT 1019 (1451)
T ss_dssp             HHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHH
Confidence            478999999999999999999975    34777874

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=97.53  E-value=3.6e-05  Score=58.54  Aligned_cols=32  Identities=16%  Similarity=0.336  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428           15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLE   46 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le   46 (57)
                      .+..|+.++|+||+.||||++|....+..||.
T Consensus       300 ~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlT  331 (915)
T 2hr0_B          300 LIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLT  331 (915)
T ss_dssp             HHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCccccCCCCCcceeh
Confidence            57889999999999999999999888888875

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=97.02  E-value=0.00025  Score=50.28  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=22.5

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCcccc
Q 035428           11 MEPERFYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        11 i~~~rl~daVd~lLsmQN~dGG~aaf   36 (57)
                      .+...+.+||+||++.||.||||+.=
T Consensus       188 ~~~~~v~ka~~fL~scQn~DGGfGe~  213 (377)
T 1n4q_B          188 WSGMDMKKAISYIRRSMSYDNGLAQG  213 (377)
T ss_dssp             GGGSCHHHHHHHHHHTBCTTSSBBSS
T ss_pred             CChHHHHHHHHHHHHhcCCCCCCCCC
Confidence            45567899999999999999999863

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=96.79  E-value=0.00048  Score=47.69  Aligned_cols=25  Identities=32%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccccC
Q 035428           14 ERFYDAVNYILSMQSETGGVPAWEP   38 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aafE~   38 (57)
                      ..-.++|+||+++||+||||+.+.-
T Consensus        66 ~~r~~~i~~l~s~Q~~dGGF~g~~g   90 (331)
T 3dss_B           66 MNKEEILVFIKSCQHECGGVSASIG   90 (331)
T ss_dssp             SCHHHHHHHHHHTBCTTSCBBSSTT
T ss_pred             hhHHHHHHHHhhhcCCCCCcCCCCC
Confidence            3457899999999999999998763

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=96.61  E-value=0.00067  Score=46.96  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCccccc
Q 035428           12 EPERFYDAVNYILSMQSETGGVPAWE   37 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aafE   37 (57)
                      +...+.++|+||++.||.||||+.-.
T Consensus       160 ~~~~~~k~v~~L~s~Q~~dGGfg~~p  185 (331)
T 3dss_B          160 DAINVEKAIEFVLSCMNFDGGFGCRP  185 (331)
T ss_dssp             GGSCHHHHHHHHHTTBCTTSCBCSST
T ss_pred             CHHHHHHHHHHHHHhCcCCCCcCCCC
Confidence            45568899999999999999999754

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=96.48  E-value=0.00087  Score=49.89  Aligned_cols=28  Identities=18%  Similarity=0.387  Sum_probs=24.1

Q ss_pred             cCCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428            7 VGEKMEPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus         7 ~g~~i~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      +|. ++...+.+|++||++.||.||||+.
T Consensus       209 Lg~-~~~~~v~kav~fI~scQn~DGGfGe  236 (520)
T 3q7a_B          209 LDI-ITPELLHNVDKFVSACQTYEGGFAC  236 (520)
T ss_dssp             HTC-CCHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred             cCC-CChHHHHHHHHHHHHhcCCCCCccC
Confidence            344 5677899999999999999999997

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=96.44  E-value=0.0018  Score=47.66  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=22.6

Q ss_pred             CCCCChHHHHHHHHHHHHhhcCCCCc
Q 035428            8 GEKMEPERFYDAVNYILSMQSETGGV   33 (57)
Q Consensus         8 g~~i~~~rl~daVd~lLsmQN~dGG~   33 (57)
                      |.+...+++.+|++||+++|++||||
T Consensus       460 g~~~~~~~i~rai~~L~~~Q~~DGsw  485 (631)
T 2sqc_A          460 GYDDAWKVIRRAVEYLKREQKPDGSW  485 (631)
T ss_dssp             TCCTTSHHHHHHHHHHHHHCCTTSCC
T ss_pred             CCCccHHHHHHHHHHHHHhcCCCCCC
Confidence            44455678999999999999999999

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=96.24  E-value=0.0017  Score=49.03  Aligned_cols=35  Identities=17%  Similarity=0.146  Sum_probs=29.2

Q ss_pred             cCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCC
Q 035428            7 VGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRA   41 (57)
Q Consensus         7 ~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~   41 (57)
                      .|..++++-....++||++.||+||||+-|.-..+
T Consensus       115 ~~~~~~~~~~~~~~~yl~~~Q~~DGgWgl~~~~~s  149 (732)
T 1w6k_A          115 ARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKS  149 (732)
T ss_dssp             HTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCC
T ss_pred             hCCCCCHHHHHHHHHHHHHhcCCCCCccCCcCCCc
Confidence            46667777889999999999999999998875443

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=96.24  E-value=0.0015  Score=47.02  Aligned_cols=26  Identities=12%  Similarity=0.103  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHh-hcCCCCcccccCCCC
Q 035428           16 FYDAVNYILSM-QSETGGVPAWEPRRA   41 (57)
Q Consensus        16 l~daVd~lLsm-QN~dGG~aafE~~r~   41 (57)
                      ..++|+||++| |+.+|||++||.+|.
T Consensus        75 ~~~hi~~l~~~lq~~~gg~~a~D~~r~  101 (437)
T 2h6f_B           75 REKHFHYLKRGLRQLTDAYECLDASRP  101 (437)
T ss_dssp             HHHHHHHHHHHTTEECGGGGGGTTCHH
T ss_pred             HHHHHHHHHHcCCCCCCCcccccCCCc
Confidence            47799999999 999999999998863

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=95.89  E-value=0.0045  Score=42.57  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCccc
Q 035428           10 KMEPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        10 ~i~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      .++.+.+.+|++||++.|++||+|..
T Consensus       138 ~v~~~~i~~a~~~L~~~Q~~dG~~~~  163 (367)
T 1hzf_A          138 GGSPEKLQETSNWLLSQQQADGSFQD  163 (367)
T ss_dssp             CCCHHHHHHHHHHHGGGBCTTSCBCC
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCccc
Confidence            35678999999999999999999964

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=95.85  E-value=0.0063  Score=39.86  Aligned_cols=28  Identities=14%  Similarity=0.226  Sum_probs=24.4

Q ss_pred             CCChHHHHHHHHHHHH-hhcCCCCccccc
Q 035428           10 KMEPERFYDAVNYILS-MQSETGGVPAWE   37 (57)
Q Consensus        10 ~i~~~rl~daVd~lLs-mQN~dGG~aafE   37 (57)
                      .++++.+.+|++||++ .|++||+|....
T Consensus        85 ~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~  113 (277)
T 1qqf_A           85 AIDSQVLCGAVKWLILEKQKPDGVFQEDG  113 (277)
T ss_dssp             CCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred             CCCHHHHHHHHHHHHHhccCCCCCccCCc
Confidence            4778899999999997 999999997644

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=95.77  E-value=0.0044  Score=45.97  Aligned_cols=32  Identities=22%  Similarity=0.467  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428           15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLE   46 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le   46 (57)
                      .|..|+.-+|++|+.||||+.|-...+..||.
T Consensus       369 ~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLT  400 (767)
T 4fxk_B          369 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLT  400 (767)
T ss_dssp             HHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCcccCCCCCCCchhH
Confidence            37889999999999999999998777888875

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=95.51  E-value=0.0095  Score=39.77  Aligned_cols=28  Identities=14%  Similarity=0.235  Sum_probs=24.4

Q ss_pred             CCChHHHHHHHHHHHH-hhcCCCCccccc
Q 035428           10 KMEPERFYDAVNYILS-MQSETGGVPAWE   37 (57)
Q Consensus        10 ~i~~~rl~daVd~lLs-mQN~dGG~aafE   37 (57)
                      .++++.+.+|++||++ .|++||+|....
T Consensus       101 ~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~  129 (310)
T 2wy7_A          101 AIDSQVLCGAVKWLILEKQKPDGVFQEDA  129 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCCccccCC
Confidence            4778899999999997 999999997644

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=94.73  E-value=0.017  Score=46.46  Aligned_cols=33  Identities=15%  Similarity=0.343  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428           15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV   47 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~   47 (57)
                      +|..|+.=+|+||+.||||+.|-...+..||.-
T Consensus      1047 ~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTA 1079 (1661)
T 2b39_A         1047 LIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTA 1079 (1661)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCccccCCCCCchhhhH
Confidence            577899999999999999999987777888753

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=93.92  E-value=0.029  Score=45.13  Aligned_cols=32  Identities=19%  Similarity=0.465  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428           15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLE   46 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le   46 (57)
                      .+..++.-+|+||+.||||+.|....+..||.
T Consensus      1048 ~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLT 1079 (1676)
T 3cu7_A         1048 KLKEGMLSIMSYRNADYSYSVWKGGSASTWLT 1079 (1676)
T ss_dssp             HHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHH
T ss_pred             HHHHHHHHHhhccCCCCCccccCCCCCcEEEe
Confidence            46777888999999999999996666777875

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=92.14  E-value=0.072  Score=38.07  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhhcCCCCccc
Q 035428           15 RFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ....+|+||++.||-||||+.
T Consensus       192 d~~~~~~~I~~cq~ydGGfg~  212 (390)
T 3dra_B          192 DLISLQQFILDRININGGFSS  212 (390)
T ss_dssp             CHHHHHHHHHTTBCTTSCBCS
T ss_pred             cHHHHHHHHHHhcCCCCCcCC
Confidence            356799999999999999994

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=92.11  E-value=0.027  Score=46.05  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428           15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV   47 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~   47 (57)
                      .|..|+.-+|+||+.||||++|-...+..||.-
T Consensus      1031 ~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTA 1063 (1642)
T 3prx_B         1031 QIVTGYAQQMVYKKADHSYAAFTNRASSSWLTA 1063 (1642)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHHhcCCCCCeecCCCCCCccccHH
Confidence            477899999999999999999987678889864

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=92.04  E-value=0.078  Score=38.44  Aligned_cols=22  Identities=5%  Similarity=-0.000  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      +++.+||+||.+-|+.||||-.
T Consensus       314 ~aI~~Av~WL~s~Q~~dg~w~~  335 (408)
T 1r76_A          314 QAIRGGVAWLNTSVIRDRAWVK  335 (408)
T ss_dssp             HHHHHHHHHHHHSCCCC-----
T ss_pred             HHHHHHHHHHHHhhcCCCceee
Confidence            3799999999999999999984

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=91.19  E-value=0.1  Score=42.08  Aligned_cols=28  Identities=11%  Similarity=0.163  Sum_probs=24.4

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428           10 KMEPERFYDAVNYILSMQSETGGVPAWE   37 (57)
Q Consensus        10 ~i~~~rl~daVd~lLsmQN~dGG~aafE   37 (57)
                      .+++..+.+|++||++.|+.||.|....
T Consensus      1034 ~v~~~~l~~a~~wL~~~Q~~dG~f~~~g 1061 (1451)
T 4acq_A         1034 FIDEAHITQALIWLSQRQKDNGCFRSSG 1061 (1451)
T ss_dssp             CCCTHHHHHHHHHHHHTEETTTEECCCC
T ss_pred             ccCHHHHHHHHHHHHhhcccCCcccccC
Confidence            4678899999999999999999997543

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=88.88  E-value=0.28  Score=37.36  Aligned_cols=28  Identities=14%  Similarity=0.235  Sum_probs=24.0

Q ss_pred             CCChHHHHHHHHHHHH-hhcCCCCccccc
Q 035428           10 KMEPERFYDAVNYILS-MQSETGGVPAWE   37 (57)
Q Consensus        10 ~i~~~rl~daVd~lLs-mQN~dGG~aafE   37 (57)
                      .++++.+.+|++||++ .|+.||+|....
T Consensus       346 ~v~~~~i~~al~~L~~~~Q~~dG~f~~~~  374 (915)
T 2hr0_B          346 AIDSQVLCGAVKWLILEKQKPDGVFQEDA  374 (915)
T ss_dssp             CCCHHHHHHHHHHHHHHHBCTTSCBCCCS
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCccccCc
Confidence            4778999999999996 999999996543

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=86.52  E-value=0.3  Score=34.55  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHHHHhhcCCCCc
Q 035428           13 PERFYDAVNYILSMQSETGGV   33 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~   33 (57)
                      ..++.+||+|||.-|-.+|||
T Consensus       168 ~~av~Rgid~Llk~Qe~dggw  188 (332)
T 1gxm_A          168 KTAVTKGTDYILKAQWKQNGV  188 (332)
T ss_dssp             HHHHHHHHHHHHHHSCEETTE
T ss_pred             HHHHHHHHHHHHHhhCccCCC
Confidence            468999999999999999875

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=86.36  E-value=0.54  Score=36.92  Aligned_cols=28  Identities=14%  Similarity=0.186  Sum_probs=24.2

Q ss_pred             CCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428            8 GEKMEPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus         8 g~~i~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      |..++++.+.+|++||.+.|++||.|..
T Consensus       918 ~~~v~~~~l~~a~~~L~~~q~~dG~f~~  945 (1325)
T 2pn5_A          918 ISDIDAAMVEKALDWLASKQHFSGRFDK  945 (1325)
T ss_dssp             CSCSCHHHHHHHHHHHHHTCCTTSCCCC
T ss_pred             EEcCCHHHHHHHHHHHHhhhccCCCccc
Confidence            4468889999999999999999998843

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=83.93  E-value=0.47  Score=36.39  Aligned_cols=21  Identities=29%  Similarity=0.249  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhhcCCCCcccc
Q 035428           16 FYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        16 l~daVd~lLsmQN~dGG~aaf   36 (57)
                      .-.+|+|||.=|.+||+|+..
T Consensus        52 Fp~~~~wil~nQ~~DGsWG~~   72 (727)
T 3pya_A           52 FPSAVKWIAENQLSDGSWGDA   72 (727)
T ss_dssp             CHHHHHHHHHTCCTTSCCSCS
T ss_pred             CHHHHHHHHhcCCCCCCCCCC
Confidence            455799999999999999974

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=83.76  E-value=0.46  Score=36.49  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhhcCCCCcccc
Q 035428           16 FYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        16 l~daVd~lLsmQN~dGG~aaf   36 (57)
                      .-.+|+|||.=|.+||||+.-
T Consensus        55 Fp~~~~wil~nQ~~DGsWg~~   75 (764)
T 3p5p_A           55 FPQALNWVFNNQLQDGSWGIE   75 (764)
T ss_dssp             CHHHHHHHHHCCCTTSCCSCT
T ss_pred             ChHHHHHHHHccCCCCCCCCC
Confidence            446799999999999999963

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=83.07  E-value=0.51  Score=36.52  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhhcCCCCcccc
Q 035428           16 FYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        16 l~daVd~lLsmQN~dGG~aaf   36 (57)
                      .-.+|+|||.=|.+||||+.-
T Consensus       103 Fp~~~~wil~nQ~~DGsWg~~  123 (817)
T 3sdr_A          103 FPQTVDWILKNQLKDGSWGIQ  123 (817)
T ss_dssp             SHHHHHHHHHCCCTTSCCSCT
T ss_pred             chHHHHHHHHccCCCCCCCCC
Confidence            356799999999999999963

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=82.66  E-value=0.54  Score=36.24  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhhcCCCCccc
Q 035428           16 FYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        16 l~daVd~lLsmQN~dGG~aa   35 (57)
                      .-.+|+|||.=|.+||+|+.
T Consensus        76 Fp~~~~wil~nQ~~DGsWg~   95 (785)
T 3s9v_A           76 FPETVEWILQNQLKDGSWGE   95 (785)
T ss_dssp             SHHHHHHHHHCCCTTSCCSC
T ss_pred             chHHHHHHHHccCCCCCCCC
Confidence            34689999999999999984

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=81.11  E-value=0.99  Score=32.66  Aligned_cols=20  Identities=5%  Similarity=-0.052  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCcc
Q 035428           14 ERFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~a   34 (57)
                      .+...|+++|++ |++||+|.
T Consensus       250 w~~~~a~~~Ll~-q~~dG~F~  269 (414)
T 2bb6_A          250 TACLKAKAALQA-SLQHKTFQ  269 (414)
T ss_dssp             HHHHHHHHHHHH-HHTTTCCC
T ss_pred             chHHHHHHHHHH-hccCCCCC
Confidence            366789999999 99999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	57
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	7e-11
d2sqca1	352	a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla	2e-08
d1gxma_	324	a.102.5.1 (A:) Polygalacturonic acid lyase (pectat	4e-05

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 7e-11
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKI 49
                 V E +  ER  DAV  +L+M++  GG   +E +R    LE+  
Sbjct: 184 QEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLN 232

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

 Score = 45.9 bits (108), Expect = 2e-08
 Identities = 8/46 (17%), Positives = 16/46 (34%)

Query: 1   MMPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46
           +    +  E+   +       +I+ MQS  GG  A++         
Sbjct: 107 LNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPN 152

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

 Score = 36.4 bits (84), Expect = 4e-05
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 14  ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47
           +    A N++++ Q  TG +P + P +       
Sbjct: 89  DAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHA 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	57
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.62
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.33
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	98.79
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.28
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	97.74
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	97.66
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	97.53
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	97.49
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	97.41
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	97.37
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	97.03
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	96.9
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	96.52
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	96.4
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	94.98
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	94.13
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	92.58
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	90.95
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	89.51
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	88.63
d1ia6a_	431	Nonprocessive cellulase Cel9M {Clostridium cellulo	87.45
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	86.54
d1c6sa_	87	Cytochrome c6 (synonym: cytochrome c553) {Cyanobac	86.12
d1ctja_	89	Cytochrome c6 (synonym: cytochrome c553) {Monoraph	85.64
d1ks8a_	433	Endo-b-1,4-glucanase {Termite (Nasutitermes takasa	85.43
d1cf7b_	82	Cell cycle transcription factor DP-2 {Human (Homo	85.41
d1g87a1	454	Endo/exocellulase:cellobiose E-4, N-terminal domai	83.94
d1tf4a1	460	Endo/exocellulase:cellobiose E-4, N-terminal domai	80.65

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-16  Score=113.54  Aligned_cols=51  Identities=31%  Similarity=0.448  Sum_probs=47.8

Q ss_pred             ccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428            6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS   56 (57)
Q Consensus         6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~   56 (57)
                      .+++++.+++|++||+|||+|||+||||++||++++..|||.+||+++|..
T Consensus       189 ~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~  239 (448)
T d1w6ka1         189 HVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGD  239 (448)
T ss_dssp             TCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSS
T ss_pred             cccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhc
Confidence            357889999999999999999999999999999999999999999999864

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.33  E-value=2.4e-13  Score=92.32  Aligned_cols=45  Identities=20%  Similarity=0.310  Sum_probs=40.7

Q ss_pred             CCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCcccc
Q 035428            9 EKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTY   53 (57)
Q Consensus         9 ~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~   53 (57)
                      +.+..++|.+||+||++|||+||||++||+.++..|++++|+++.
T Consensus       115 ~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~  159 (352)
T d2sqca1         115 ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDF  159 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSS
T ss_pred             hhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhh
Confidence            334567899999999999999999999999999999999998874

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=98.79  E-value=1.5e-09  Score=75.13  Aligned_cols=39  Identities=18%  Similarity=0.374  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428           13 PERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST   52 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae   52 (57)
                      .+++.+||+|||+|||+||||++|++.++. ++.+|++.+
T Consensus        88 ~~A~~Rgi~~LL~~Q~~nGGWpqf~P~~~~-y~~~ItFND  126 (324)
T d1gxma_          88 RDAVRKAANFLVNSQYSTGALPQFYPLKGG-YSDHATFND  126 (324)
T ss_dssp             HHHHHHHHHHHHHHCCTTSCCBSEESCCSG-GGGSEECGG
T ss_pred             HHHHHHHHHHHHhhccCCCCccccccCCCC-cccccCCCc
Confidence            468999999999999999999999998875 557776543

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.28  E-value=2.5e-07  Score=65.19  Aligned_cols=37  Identities=19%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCc
Q 035428           13 PERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKIT   50 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnp   50 (57)
                      .+++.+|++|||+||++||||+.|.+.+. .+..++.+
T Consensus       174 ~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~-~Y~~~Itf  210 (408)
T d1r76a_         174 RDAALKGIEYLLASQFPNGGWPQVWPLEG-GYHDAITY  210 (408)
T ss_dssp             HHHHHHHHHHHHHHSCTTSCCBSBSSCCC-GGGGSEEC
T ss_pred             HHHHHHHHHHHHHhhCCCCCccccCCCCc-cccccccc
Confidence            35789999999999999999999997654 45566544

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=97.74  E-value=7.8e-06  Score=54.66  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=25.1

Q ss_pred             cCCCCChHHHHHHHHHHHHhhcCCCCcc
Q 035428            7 VGEKMEPERFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus         7 ~g~~i~~~rl~daVd~lLsmQN~dGG~a   34 (57)
                      +|.....+.+.+||+||++.||+||||+
T Consensus       229 ~g~~~~~~~v~ka~~~L~~~Q~~dGgWg  256 (352)
T d2sqca1         229 VGIDTREPYIQKALDWVEQHQNPDGGWG  256 (352)
T ss_dssp             TTCCTTSHHHHHHHHHHHHTCCTTSCCC
T ss_pred             cccccchHHHHHHHHHHHhccCCCCCcc
Confidence            5666677899999999999999999997

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=97.66  E-value=1.2e-05  Score=52.33  Aligned_cols=31  Identities=23%  Similarity=0.436  Sum_probs=26.7

Q ss_pred             ccCCCCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428            6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWE   37 (57)
Q Consensus         6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE   37 (57)
                      .+| .++++...++++||++.||+||||+-+-
T Consensus        16 ~~g-~~~~~~~~~~~~~l~~~Q~~dGgW~~~~   46 (271)
T d2sqca2          16 ILD-RVDRDRMEKIRRYLLHEQREDGTWALYP   46 (271)
T ss_dssp             HTT-CCCHHHHHHHHHHHHHHSCTTSCCCSST
T ss_pred             HhC-CCCHHHHHHHHHHHHHccCCCCCccCCC
Confidence            456 4788999999999999999999998553

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.4e-05  Score=48.96  Aligned_cols=33  Identities=18%  Similarity=0.362  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE   46 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le   46 (57)
                      +.|..|+.=|++||++||||+-|....+..|+.
T Consensus        54 ~~i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lT   86 (294)
T d1c3da_          54 ELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLT   86 (294)
T ss_dssp             HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCCCcchH
Confidence            458999999999999999999998777777765

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.2e-05  Score=52.68  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=30.5

Q ss_pred             ccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428            6 IVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRR   40 (57)
Q Consensus         6 ~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r   40 (57)
                      +.|.+++++...++++||++.||+||||+-+....
T Consensus        15 i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~   49 (279)
T d1w6ka2          15 VARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDK   49 (279)
T ss_dssp             HHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSC
T ss_pred             hcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCC
Confidence            46788999999999999999999999998776543

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4.1e-05  Score=48.87  Aligned_cols=33  Identities=21%  Similarity=0.480  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE   46 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le   46 (57)
                      +.+..|+.-|++||+.||||+-|.......|+.
T Consensus        52 ~~i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlT   84 (326)
T d1hzfa_          52 DLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLT   84 (326)
T ss_dssp             HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccCCCCCCchHHH
Confidence            358999999999999999999998777777764

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=97.37  E-value=4.9e-05  Score=49.38  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             CCCCChHHHHHHHHHHHHhhcCCCCcccccC
Q 035428            8 GEKMEPERFYDAVNYILSMQSETGGVPAWEP   38 (57)
Q Consensus         8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~   38 (57)
                      ..++....+.+|++||++.||.||||+++-+
T Consensus       197 ~~~lr~~a~~~a~~wl~~~q~~dGgwG~i~p  227 (271)
T d2sqca2         197 VHPFRRAAEIRALDWLLERQAGDGSWGGIQP  227 (271)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCCTTSSSTTSHH
T ss_pred             CCchhhHHHHHHHHHHHHHccCCCCccccCH
Confidence            3567778899999999999999999987543

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00024  Score=49.30  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             cccCCCCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428            5 EIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPR   39 (57)
Q Consensus         5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~   39 (57)
                      +++|+.++++...+.|+||.++||++|||+.+...
T Consensus        92 ~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~  126 (401)
T d2h6fb1          92 ELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQ  126 (401)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTC
T ss_pred             HHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence            46788899999999999999999999999987644

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00019  Score=49.89  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             hHHHHHHHHHHHHhhcCCCCcc
Q 035428           13 PERFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~a   34 (57)
                      .+.+.+||+||++.||+||||+
T Consensus       325 ~~~v~ka~~wLls~Q~~DGGWg  346 (448)
T d1w6ka1         325 CAEVSRACDFLLSRQMADGGWG  346 (448)
T ss_dssp             CHHHHHHHHHHHTTCCTTSCCC
T ss_pred             cHHHHHHHHHHHhccCCCCCcc
Confidence            4679999999999999999996

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.00058  Score=45.40  Aligned_cols=29  Identities=28%  Similarity=0.224  Sum_probs=23.0

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCcccccCCC
Q 035428           12 EPERFYDAVNYILSMQSETGGVPAWEPRR   40 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aafE~~r   40 (57)
                      ++..-.++++||.++||+||||+......
T Consensus        58 ~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~   86 (325)
T d3dssb1          58 HRMNKEEILVFIKSCQHECGGVSASIGHD   86 (325)
T ss_dssp             GGSCHHHHHHHHHHTBCTTSCBBSSTTSC
T ss_pred             chHHHHHHHHHHHHhcCCCCCcCCCCCCc
Confidence            34445678999999999999999876543

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.40  E-value=0.00058  Score=45.40  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCccc
Q 035428           12 EPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      +...+.++++||++.||.||||+.
T Consensus       154 ~~~~~~~~~~~i~scQn~DGGfg~  177 (325)
T d3dssb1         154 DAINVEKAIEFVLSCMNFDGGFGC  177 (325)
T ss_dssp             GGSCHHHHHHHHHTTBCTTSCBCS
T ss_pred             chhhHHHHHHHHHHhcCCcCCccc
Confidence            455678899999999999999985

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.98  E-value=0.0053  Score=41.62  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.3

Q ss_pred             CChHHHHHHHHHHHHhhcCCCCccc
Q 035428           11 MEPERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        11 i~~~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ++.+...++|+||++.||-||||+.
T Consensus       171 ~~~~~~~~~~~~I~scq~~DGGfg~  195 (346)
T d1n4qb_         171 WSGMDMKKAISYIRRSMSYDNGLAQ  195 (346)
T ss_dssp             GGGSCHHHHHHHHHHTBCTTSSBBS
T ss_pred             CccccHHHHHHHHHHhcCcCCCccC
Confidence            3445578899999999999999985

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.0062  Score=41.99  Aligned_cols=25  Identities=24%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             ChHHHHHHHHHHHHhhcCCCCcccc
Q 035428           12 EPERFYDAVNYILSMQSETGGVPAW   36 (57)
Q Consensus        12 ~~~rl~daVd~lLsmQN~dGG~aaf   36 (57)
                      .++-+.++++||++.||.||||+.-
T Consensus       198 ~~~~~~~~~~~I~scQ~~dGGfg~~  222 (401)
T d2h6fb1         198 TPDLFEGTAEWIARCQNWEGGIGGV  222 (401)
T ss_dssp             CTTTTTTHHHHHHHHBCTTSSBCSS
T ss_pred             CHHHHHHHHHHHHHccCCCCCccCC
Confidence            3445678999999999999999853

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.038  Score=34.51  Aligned_cols=22  Identities=23%  Similarity=0.214  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCccc
Q 035428           14 ERFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~aa   35 (57)
                      +...+.|+||++.||.+|||.+
T Consensus       285 ~~~~~~~~WL~~qr~~~Ggw~S  306 (326)
T d1hzfa_         285 EMADQASAWLTRQGSFQGGFRS  306 (326)
T ss_dssp             HHHHHHHHHHHHHTTSTTCSCS
T ss_pred             hhHHHHHHHHHHhccCCCCCcc
Confidence            3467899999999999999964

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.95  E-value=0.057  Score=36.33  Aligned_cols=19  Identities=21%  Similarity=0.179  Sum_probs=16.5

Q ss_pred             HHHHHHHHHhhcCCCCccc
Q 035428           17 YDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        17 ~daVd~lLsmQN~dGG~aa   35 (57)
                      ...++||.++|++||||.+
T Consensus       128 ~~i~~~l~~lq~~DGsF~~  146 (346)
T d1n4qb_         128 EACLAGLRALQLEDGSFCA  146 (346)
T ss_dssp             HHHHHHHHHHBCTTSCBCS
T ss_pred             HHHHHHHHHhcCCCCCccc
Confidence            4578999999999999965

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=89.51  E-value=0.07  Score=36.83  Aligned_cols=21  Identities=24%  Similarity=0.211  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHHhhcCCCCc
Q 035428           13 PERFYDAVNYILSMQSETGGV   33 (57)
Q Consensus        13 ~~rl~daVd~lLsmQN~dGG~   33 (57)
                      .+++.+||+|||..|-.+|||
T Consensus       244 ~~a~~rgi~~ll~~Q~~~gg~  264 (408)
T d1r76a_         244 LEATNAAIHCIVETQVVQDGK  264 (408)
T ss_dssp             HHHHHHHHHHHHHHSCEETTE
T ss_pred             HHHHHHHHHHHHHHhcccCCC
Confidence            357999999999999999996

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=0.12  Score=31.34  Aligned_cols=21  Identities=14%  Similarity=0.120  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHhhcCCCCccc
Q 035428           15 RFYDAVNYILSMQSETGGVPA   35 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~aa   35 (57)
                      ...+.|+||++-|+.+|||.+
T Consensus       255 ~~~~~~~wL~~qr~~~g~w~S  275 (294)
T d1c3da_         255 FVPPVVRWLNEQRYYGGGYGS  275 (294)
T ss_dssp             THHHHHHHHHHTTCCCCSTTC
T ss_pred             hHHHHHHHHHHcccCCCCCcc
Confidence            456789999999999999964

>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Nonprocessive cellulase Cel9M
species: Clostridium cellulolyticum [TaxId: 1521]

Probab=87.45  E-value=0.16  Score=33.85  Aligned_cols=19  Identities=11%  Similarity=0.211  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHhhcCCCCc
Q 035428           15 RFYDAVNYILSMQSETGGV   33 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~   33 (57)
                      .+.-++||||.||+++|++
T Consensus        97 E~~wg~D~llkmq~~~g~~  115 (431)
T d1ia6a_          97 QLKYFTDYFLKSHPNSTTF  115 (431)
T ss_dssp             HHHHHHHHHHHTCCSTTCE
T ss_pred             HHHHHHHHHHHcccCCCeE
Confidence            3556899999999999984

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=86.54  E-value=0.14  Score=34.38  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCc
Q 035428           14 ERFYDAVNYILSMQSETGGV   33 (57)
Q Consensus        14 ~rl~daVd~lLsmQN~dGG~   33 (57)
                      +++.+||+|||..|-.+|||
T Consensus       161 ~A~~Rgi~~lL~~Q~~~gg~  180 (324)
T d1gxma_         161 TAVTKGTDYILKAQWKQNGV  180 (324)
T ss_dssp             HHHHHHHHHHHHHSCEETTE
T ss_pred             HHHHHHHHHHHHhhcccCCC
Confidence            56899999999999998885

>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]

Probab=86.12  E-value=0.38  Score=24.73  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             CCCCChHHHHHHHHHHHHhhcCCCCcc
Q 035428            8 GEKMEPERFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus         8 g~~i~~~rl~daVd~lLsmQN~dGG~a   34 (57)
                      +..++++.+.+-+.||++ |.++ ||+
T Consensus        62 ~~~Ls~~ei~~v~aYi~~-~a~~-gw~   86 (87)
T d1c6sa_          62 AGRLTDEQIQDVAAYVLD-QAAK-GWA   86 (87)
T ss_dssp             TTTSCSHHHHHHHHHHHH-HTTS-CTT
T ss_pred             cCCCCHHHHHHHHHHHHH-HHhc-CCC
Confidence            567999999999999998 5544 575

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

Probab=85.64  E-value=0.41  Score=24.67  Aligned_cols=28  Identities=11%  Similarity=0.349  Sum_probs=22.5

Q ss_pred             CCccccCCCCChHHHHHHHHHHHHhhcCCC
Q 035428            2 MPSEIVGEKMEPERFYDAVNYILSMQSETG   31 (57)
Q Consensus         2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~dG   31 (57)
                      ||+  .+..++++.+.+-|.||++++..++
T Consensus        61 Mp~--~~~~Lsd~ei~~v~~Yi~~~~~~~~   88 (89)
T d1ctja_          61 MPA--WDGRLDEDEIAGVAAYVYDQAAGNK   88 (89)
T ss_dssp             BCC--CBTTBCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCc--cCCCCCHHHHHHHHHHHHHHccCCC
Confidence            554  3667999999999999999876554

>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo-b-1,4-glucanase
species: Termite (Nasutitermes takasagoensis) [TaxId: 62960]

Probab=85.43  E-value=0.23  Score=33.21  Aligned_cols=19  Identities=11%  Similarity=0.185  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHhhcCCCCc
Q 035428           15 RFYDAVNYILSMQSETGGV   33 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~   33 (57)
                      .++-++||||.||+.+|++
T Consensus        95 E~kwg~D~llkmq~~~g~~  113 (433)
T d1ks8a_          95 AVKWATDYFIKAHTSQNEF  113 (433)
T ss_dssp             HHHHHHHHHHHHCCBTTBE
T ss_pred             HHHHHHHHHHHcccCCCCE
Confidence            3667899999999999964

>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.41  E-value=0.23  Score=27.66  Aligned_cols=13  Identities=46%  Similarity=0.912  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHh
Q 035428           14 ERFYDAVNYILSM   26 (57)
Q Consensus        14 ~rl~daVd~lLsm   26 (57)
                      .|.|||+|+|++|
T Consensus        54 RRVYDALNVLmA~   66 (82)
T d1cf7b_          54 RRVYDALNVLMAM   66 (82)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            4899999999998

>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]

Probab=83.94  E-value=0.31  Score=32.79  Aligned_cols=20  Identities=15%  Similarity=0.104  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHhhcCCCCcc
Q 035428           15 RFYDAVNYILSMQSETGGVP   34 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~a   34 (57)
                      -++-++||||.||..+|++-
T Consensus        94 E~kwglDwllkmq~~~g~~y  113 (454)
T d1g87a1          94 GIKWANDYFIKCNPTPGVYY  113 (454)
T ss_dssp             HHHHHHHHHHHTCCSTTCEE
T ss_pred             HHHHHHHHHHheecCCCeEE
Confidence            36668999999999999763

>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]

Probab=80.65  E-value=0.44  Score=32.01  Aligned_cols=19  Identities=5%  Similarity=0.128  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHhhcCCCCc
Q 035428           15 RFYDAVNYILSMQSETGGV   33 (57)
Q Consensus        15 rl~daVd~lLsmQN~dGG~   33 (57)
                      -++-++||||.||.++|++
T Consensus        96 E~~wglD~llkmq~~~g~~  114 (460)
T d1tf4a1          96 NLRWVNDYFIKAHPSPNVL  114 (460)
T ss_dssp             HHHHHHHHHHHTCSBTTBE
T ss_pred             HHHHHHHHHHhcccCCCeE
Confidence            3556899999999999866