Citrus Sinensis ID: 035432

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHccccccccccccccccccHHHHHHHHHHHHccHHHHHHcccc
Coil and Loop (DISEMBL)
maksknhtahnqsykahkngikkpkkhrhtstkgmdpkflrnqryarkhnksnggsaeee
Flexible Loop (DISEMBL)
maksknhtahnqsykahkngikkpkkhrhtstkgmdpkflrnqryarkhnksnggsaeee
Low Complexity Region (SEG)
MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE
Disordered region (IsUnstruct)
************************************************************
Disordered Region (DISOPRED)
*AKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRY***************
Disordered Region (DISEMBL)
********************************KGMDPKFLRNQRYAR*************
Disordered Region (DISPRO)
*************************KHRHTSTKGMDPKFLRNQRYARKH***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	60	2.2.26 [Sep-21-2011]
Q9M7X7	61	60S ribosomal protein L29	no	no	0.983	0.967	0.819	1e-20
Q84WM0	61	60S ribosomal protein L29	no	no	1.0	0.983	0.8	2e-20
Q8HXB8	157	60S ribosomal protein L29	N/A	no	0.85	0.324	0.725	3e-15
Q24154	76	60S ribosomal protein L29	yes	no	0.866	0.684	0.730	2e-13
P47914	159	60S ribosomal protein L29	yes	no	0.766	0.289	0.717	4e-13
Q58DW3	152	60S ribosomal protein L29	yes	no	0.766	0.302	0.717	6e-13
P25886	156	60S ribosomal protein L29	no	no	0.766	0.294	0.717	6e-13
Q95281	160	60S ribosomal protein L29	yes	no	0.766	0.287	0.717	6e-13
P47915	160	60S ribosomal protein L29	no	no	0.766	0.287	0.717	7e-13
P0DJ21	66	60S ribosomal protein L29	N/A	no	0.866	0.787	0.653	1e-11

>sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 53/61 (86%), Gaps = 2/61 (3%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNG--GSAE 58
          MAKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN   G   SAE
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 59 E 59
          E
Sbjct: 61 E 61

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 53/60 (88%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN  +G +A  E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Arabidopsis thaliana (taxid: 3702)

>sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
          MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

Macaca fascicularis (taxid: 9541)

>sp|Q24154|RL29_DROME 60S ribosomal protein L29 OS=Drosophila melanogaster GN=RpL29 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 42/52 (80%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKS 52
          MAKSKNHT HNQ+ KAH+NGIK+P + RH ST GMD KFL NQRYARK N S
Sbjct: 1  MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLS 52

Drosophila melanogaster (taxid: 7227)

>sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
          MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46

Homo sapiens (taxid: 9606)

>sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
          MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46

Bos taurus (taxid: 9913)

>sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicus GN=Rpl29 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
          MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46

Rattus norvegicus (taxid: 10116)

>sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=2 SV=4

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
          MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46

Sus scrofa (taxid: 9823)

>sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus GN=Rpl29 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
          MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46

Mus musculus (taxid: 10090)

>sp|P0DJ21|RL29_TETTH 60S ribosomal protein L29 OS=Tetrahymena thermophila GN=RPL29 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 42/52 (80%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKS 52
          MAKSKN T  NQ  K+H+NGIKKPK HRH STKG++P+FLRN+R A K++ S
Sbjct: 1  MAKSKNSTNKNQISKSHRNGIKKPKDHRHISTKGVNPRFLRNRRRAIKNDPS 52

Tetrahymena thermophila (taxid: 5911)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
357478935	445	60S ribosomal protein L29 [Medicago trun	1.0	0.134	0.916	6e-24
225437539	62	PREDICTED: 60S ribosomal protein L29-1 [	1.0	0.967	0.916	4e-23
388515093	61	unknown [Medicago truncatula]	1.0	0.983	0.916	6e-23
356521797	61	PREDICTED: 60S ribosomal protein L29-1-l	1.0	0.983	0.9	9e-23
388509690	61	unknown [Medicago truncatula]	0.983	0.967	0.918	2e-22
225431910	61	PREDICTED: 60S ribosomal protein L29-1 [	1.0	0.983	0.9	2e-22
356556030	61	PREDICTED: 60S ribosomal protein L29-1 [	1.0	0.983	0.9	2e-22
224101587	61	predicted protein [Populus trichocarpa]	1.0	0.983	0.9	3e-22
255556332	61	60S ribosomal protein L29, putative [Ric	1.0	0.983	0.883	4e-22
388520249	61	unknown [Lotus japonicus]	1.0	0.983	0.883	7e-22

>gi|357478935|ref|XP_003609753.1| 60S ribosomal protein L29 [Medicago truncatula] gi|355510808|gb|AES91950.1| 60S ribosomal protein L29 [Medicago truncatula]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/60 (91%), Positives = 56/60 (93%)

Query: 1   MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
           MAKSKNHTAHNQSYKAHKNGIKKPK+HRHTSTKGMDPKFLRNQRYARKHNK NG  A EE
Sbjct: 385 MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKNGEIATEE 444

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437539|ref|XP_002275815.1| PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera] gi|147811184|emb|CAN63474.1| hypothetical protein VITISV_016797 [Vitis vinifera] gi|297743968|emb|CBI36938.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/60 (91%), Positives = 57/60 (95%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQSYKAHKNGIKKP+KHRHTSTKGMDPKFLRNQRYARKHNK + GSA EE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNKKSEGSATEE 60

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515093|gb|AFK45608.1| unknown [Medicago truncatula]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/60 (91%), Positives = 56/60 (93%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQSYKAHKNGIKKPK+HRHTSTKGMDPKFLRNQRYARKHNK NG  A EE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKNGEIATEE 60

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521797|ref|XP_003529537.1| PREDICTED: 60S ribosomal protein L29-1-like [Glycine max] gi|356529227|ref|XP_003533197.1| PREDICTED: 60S ribosomal protein L29-1-like [Glycine max] gi|356564681|ref|XP_003550578.1| PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 57/60 (95%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQSYKAHKNGIKKPK+HRHTSTKGMDPKFLRNQRYARKHNK +G +A EE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKSGETATEE 60

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509690|gb|AFK42911.1| unknown [Medicago truncatula]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/61 (91%), Positives = 57/61 (93%), Gaps = 2/61 (3%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNG--GSAE 58
          MAKSKNHTAHNQSYKAHKNGIKKPK+HRHTSTKGMDPKFLRNQRYARKHNK NG   SAE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKNGEVASAE 60

Query: 59 E 59
          E
Sbjct: 61 E 61

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431910|ref|XP_002276776.1| PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera] gi|147802163|emb|CAN65958.1| hypothetical protein VITISV_007494 [Vitis vinifera] gi|296083268|emb|CBI22904.3| unnamed protein product [Vitis vinifera]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 56/60 (93%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQSYKAHKNGIKKP+KHRH STKGMDPKFLRNQRYARKHNK +G SA EE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHASTKGMDPKFLRNQRYARKHNKKSGESATEE 60

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556030|ref|XP_003546330.1| PREDICTED: 60S ribosomal protein L29-1 [Glycine max]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 56/60 (93%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQSYKAHKNGIKKPK+HRHTSTKGMDPKFLRNQRYARKHNK +G  A EE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKSGEIATEE 60

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101587|ref|XP_002312342.1| predicted protein [Populus trichocarpa] gi|118484518|gb|ABK94134.1| unknown [Populus trichocarpa] gi|222852162|gb|EEE89709.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 56/60 (93%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQS+KAHKNGIKKPK+HRHTSTKGMDPKFLRNQRYARKHNK  G SA EE
Sbjct: 1  MAKSKNHTAHNQSHKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKCGDSATEE 60

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556332|ref|XP_002519200.1| 60S ribosomal protein L29, putative [Ricinus communis] gi|223541515|gb|EEF43064.1| 60S ribosomal protein L29, putative [Ricinus communis]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 56/60 (93%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQSYKAHKNGIKKPK+ RHTSTKGMDPKFLRNQRYARKHNK +G +A EE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPKRQRHTSTKGMDPKFLRNQRYARKHNKKSGETATEE 60

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520249|gb|AFK48186.1| unknown [Lotus japonicus]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 54/60 (90%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQSYKAHKNGIKKPK+HRHTSTKGMDPKFLRNQRYARKHNK    S  EE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKGAESVTEE 60

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
TAIR|locus:2083368	83	AT3G06680 [Arabidopsis thalian	1.0	0.722	0.8	1.3e-22
TAIR|locus:2083333	61	AT3G06700 [Arabidopsis thalian	0.983	0.967	0.819	1.3e-22
UNIPROTKB|E1BSB6	63	RPL29 "Uncharacterized protein	0.85	0.809	0.745	9.5e-18
UNIPROTKB|Q58DW3	152	RPL29 "60S ribosomal protein L	0.85	0.335	0.725	6.7e-17
UNIPROTKB|P47914	159	RPL29 "60S ribosomal protein L	0.85	0.320	0.725	6.7e-17
UNIPROTKB|Q95281	160	RPL29 "60S ribosomal protein L	0.85	0.318	0.725	6.7e-17
RGD|62069	156	Rpl29 "ribosomal protein L29"	0.85	0.326	0.725	6.7e-17
UNIPROTKB|D4A888	148	RGD1563579 "Protein RGD1563579	0.85	0.344	0.725	6.7e-17
ZFIN|ZDB-GENE-040801-167	64	zgc:92868 "zgc:92868" [Danio r	0.85	0.796	0.725	6.7e-17
UNIPROTKB|J9PA77	159	J9PA77 "Uncharacterized protei	0.85	0.320	0.725	8.6e-17

TAIR|locus:2083368 AT3G06680 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 48/60 (80%), Positives = 53/60 (88%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
             MAKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN  +G +A  E
Sbjct:    23 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 82

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2083333 AT3G06700 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 50/61 (81%), Positives = 53/61 (86%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNG--GSAE 58
             MAKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN   G   SAE
Sbjct:     1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query:    59 E 59
             E
Sbjct:    61 E 61

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

UNIPROTKB|E1BSB6 RPL29 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 38/51 (74%), Positives = 44/51 (86%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
             MAKSKNHT HNQS K H+NGIKKP+ HR+ S KG+DPKFLRN R+A+KHNK
Sbjct:     1 MAKSKNHTTHNQSRKWHRNGIKKPRSHRYESLKGVDPKFLRNMRFAKKHNK 51

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q58DW3 RPL29 "60S ribosomal protein L29" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
             MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:     1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P47914 RPL29 "60S ribosomal protein L29" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
             MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:     1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

GO:0008201 "heparin binding" evidence=IEA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0007566 "embryo implantation" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|Q95281 RPL29 "60S ribosomal protein L29" [Sus scrofa (taxid:9823)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
             MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:     1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|62069 Rpl29 "ribosomal protein L29" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
             MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:     1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISO

GO:0008201 "heparin binding" evidence=ISO

GO:0008283 "cell proliferation" evidence=ISO

GO:0019898 "extrinsic to membrane" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0022626 "cytosolic ribosome" evidence=ISO

GO:0031589 "cell-substrate adhesion" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0042788 "polysomal ribosome" evidence=ISO

UNIPROTKB|D4A888 RGD1563579 "Protein RGD1563579" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
             MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:     1 MAKSKNHTTHNQSCKWHRNGIKKPRSQRYKSLKGVDPKFLRNMRFAKKHNK 51

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-040801-167 zgc:92868 "zgc:92868" [Danio rerio (taxid:7955)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
             MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:     1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|J9PA77 J9PA77 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query:     1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
             MAKSKNHT HNQS K H+NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:     1 MAKSKNHTTHNQSRKWHRNGIKKPQSQRYESLKGVDPKFLRNMRFAKKHNK 51

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47914	RL29_HUMAN	No assigned EC number	0.7173	0.7666	0.2893	yes	no
Q92366	RL29_SCHPO	No assigned EC number	0.6739	0.7666	0.7540	yes	no
Q9M7X7	RL291_ARATH	No assigned EC number	0.8196	0.9833	0.9672	no	no
Q24154	RL29_DROME	No assigned EC number	0.7307	0.8666	0.6842	yes	no
Q95281	RL29_PIG	No assigned EC number	0.7173	0.7666	0.2875	yes	no
P05747	RL29_YEAST	No assigned EC number	0.6956	0.7666	0.7796	yes	no
Q84WM0	RL292_ARATH	No assigned EC number	0.8	1.0	0.9836	no	no
Q58DW3	RL29_BOVIN	No assigned EC number	0.7173	0.7666	0.3026	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028098001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_42, whole genome shotgun sequence); (62 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•	•	•	•		0.930
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•	•	•	•		0.871
	GSVIVG00029522001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa)				•	•	•	•		0.861
	GSVIVG00010306001	SubName- Full=Chromosome chr5 scaffold_253, whole genome shotgun sequence; (125 aa)				•	•	•	•		0.812
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)				•		•	•		0.774
	GSVIVG00016616001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (107 aa)				•	•	•			0.771
	GSVIVG00017233001	RecName- Full=40S ribosomal protein S12; (140 aa)				•		•			0.765
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.752
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•		•			0.724
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)				•		•			0.709

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	60
pfam01779	40	pfam01779, Ribosomal_L29e, Ribosomal L29e protein	4e-11

>gnl|CDD|201968 pfam01779, Ribosomal_L29e, Ribosomal L29e protein family

 Score = 51.2 bits (123), Expect = 4e-11
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 3  KSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRN 42
          KSKNHT HNQ+ KAH+NGIKKPKKHR+ S KG+DPKFLRN
Sbjct: 1  KSKNHTNHNQNRKAHRNGIKKPKKHRYPSLKGVDPKFLRN 40

Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
PTZ00190	70	60S ribosomal protein L29; Provisional	100.0
PF01779	40	Ribosomal_L29e: Ribosomal L29e protein family; Int	100.0
KOG3504	84	consensus 60S ribosomal protein L29 [Translation,	99.97

>PTZ00190 60S ribosomal protein L29; Provisional

Probab=100.00  E-value=3.8e-40  Score=202.92  Aligned_cols=53  Identities=57%  Similarity=0.688  Sum_probs=51.7

Q ss_pred             CCCCccccchhhhHHhhhcCCCCCC-CCCCCCCCCCCHHHHHHHHHHHhhcCCC
Q 035432            1 MAKSKNHTAHNQSYKAHKNGIKKPK-KHRHTSTKGMDPKFLRNQRYARKHNKSN   53 (60)
Q Consensus         1 MaKsKNHT~HNQs~K~HRNGIKKp~-~~ry~slKGvdpKFLRN~rfAkK~nkk~   53 (60)
                      ||||||||+||||+||||||||||+ ++||+||+||||+||||||||+++++++
T Consensus         1 MAKSKNHT~HNQs~K~HRNGIKKp~~~~ry~S~kG~d~kflrN~r~akk~n~k~   54 (70)
T PTZ00190          1 MAKSKNHTNHNQSSKNHRNGIKGPLPLHLHNSKRGSWLPALVNARRVRKHNQKA   54 (70)
T ss_pred             CCCcccccccccchhhhccCcCCCccccccchhcccChHHHHHHHHHHhhCHHH
Confidence            9999999999999999999999999 4999999999999999999999999987

>PF01779 Ribosomal_L29e: Ribosomal L29e protein family; InterPro: IPR002673 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.2e-35  Score=165.16  Aligned_cols=40  Identities=75%  Similarity=1.043  Sum_probs=19.8

Q ss_pred             CCccccchhhhHHhhhcCCCCCCCCCCCCCCCCCHHHHHH
Q 035432            3 KSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRN   42 (60)
Q Consensus         3 KsKNHT~HNQs~K~HRNGIKKp~~~ry~slKGvdpKFLRN   42 (60)
                      ||||||+||||+||||||||||+++||+||+||||+||||
T Consensus         1 KsKNhT~hNqs~K~HRNGIKKp~~~r~~SlKGvdpKflrN   40 (40)
T PF01779_consen    1 KSKNHTTHNQSRKWHRNGIKKPKSQRYESLKGVDPKFLRN   40 (40)
T ss_dssp             -------TTHHHHHHTT--------SS---TT--HHHHHH
T ss_pred             CCccccccchhhhhhccCcCCCcccccccccCcCchhhcC
Confidence            7999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. There are there are 20 to 22 copies of the L29 gene in Rattus norvegicus (Rat). Rat L29 is related to yeast ribosomal protein YL43 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_d 4A18_T 4A1B_T 4A1D_T 4A19_T 3IZR_d.

>KOG3504 consensus 60S ribosomal protein L29 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.4e-33  Score=176.45  Aligned_cols=54  Identities=67%  Similarity=0.937  Sum_probs=51.8

Q ss_pred             CCCCccccchhhhHHhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCC
Q 035432            1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNG   54 (60)
Q Consensus         1 MaKsKNHT~HNQs~K~HRNGIKKp~~~ry~slKGvdpKFLRN~rfAkK~nkk~~   54 (60)
                      ||||||||+|||+.|||||||+||+++||.||+||||+||+||+||++++++..
T Consensus         1 maksknht~hNq~~KahRngIkkp~~~r~~sl~g~dpKf~rn~~~a~kg~~~~q   54 (84)
T KOG3504|consen    1 MAKSKNHTTHNQNKKAHRNGIKKPRKQRYESLRGVDPKFLRNMRPARKGSKKQQ   54 (84)
T ss_pred             CCcccccccccccHHHHHhhccchhhhhhhhhcCCCHHHHHhcchhhcccHHHH
Confidence            999999999999999999999999999999999999999999999998887663

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	60
3izr_d	60	Localization Of The Large Subunit Ribosomal Protein		7e-24
4a18_T	66	T.Thermophila 60s Ribosomal Subunit In Complex With		9e-13
3izs_d	59	Localization Of The Large Subunit Ribosomal Protein		4e-12
3zf7_d	71	High-resolution Cryo-electron Microscopy Structure		3e-05

>pdb|3IZR|DD Chain d, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 60

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 55/60 (91%)
Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKNHTAHNQSYKAHKNGIKKPK+HR TSTKGMDPKFLRNQRY+RKHNK +G +  EE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSGEAESEE 60

>pdb|4A18|T Chain T, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 66

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 42/52 (80%)
Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKS 52
          MAKSKN T  NQ  K+H+NGIKKPK HRH STKG++P+FLRN+R A K++ S
Sbjct: 1  MAKSKNSTNKNQISKSHRNGIKKPKDHRHISTKGVNPRFLRNRRRAIKNDPS 52

>pdb|3IZS|DD Chain d, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 59

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 40/46 (86%)
Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
          MAKSKNHTAHNQ+ KAH+NGIKKPK +++ S KG+DPKF RN ++A
Sbjct: 1  MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46

>pdb|3ZF7|DD Chain d, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 71

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 1  MAKSKNHTAHNQSYKAHKNGIKKP-KKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEE 59
          MAKSKNHT HNQS K H+NGIK P   + + S +G     L N R  RK+N+     A  
Sbjct: 1  MAKSKNHTNHNQSRKNHRNGIKPPLPLYMYNSKRGGWLPALVNTRRVRKNNQKAALKARR 60
Query: 60 E 60
          E
Sbjct: 61 E 61
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	60
3izc_d	59	60S ribosomal protein RPL29 (L29E); eukaryotic rib	3e-16
3iz5_D	405	60S ribosomal protein L4 (L4P); eukaryotic ribosom	4e-16
4a18_T	66	RPL29, 60S ribosomal protein L36; ribosome, eukary	3e-14

>4a18_T RPL29, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_T 4a1b_T 4a1d_T Length = 66

 Score = 59.2 bits (143), Expect = 3e-14
 Identities = 36/60 (60%), Positives = 44/60 (73%)

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
          MAKSKN T  NQ  K+H+NGIKKPK HRH STKG++P+FLRN+R A K++ S   S   E
Sbjct: 1  MAKSKNSTNKNQISKSHRNGIKKPKDHRHISTKGVNPRFLRNRRRAIKNDPSIKKSKNLE 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	60
4a18_T	66	RPL29, 60S ribosomal protein L36; ribosome, eukary	100.0
3iz5_d	60	60S ribosomal protein L29 (L29E); eukaryotic ribos	100.0
3izc_d	59	60S ribosomal protein RPL29 (L29E); eukaryotic rib	100.0

>4a18_T RPL29, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_T 4a1b_T 4a1d_T

Probab=100.00  E-value=1.4e-43  Score=215.17  Aligned_cols=57  Identities=61%  Similarity=0.837  Sum_probs=53.6

Q ss_pred             CCCCccccchhhhHHhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCc
Q 035432            1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSA   57 (60)
Q Consensus         1 MaKsKNHT~HNQs~K~HRNGIKKp~~~ry~slKGvdpKFLRN~rfAkK~nkk~~~~~   57 (60)
                      ||||||||+||||+||||||||||+++||+||+||||+||||||||++|++++..+.
T Consensus         1 MAKSKNHT~HNQs~K~HRNGIKKp~~~ry~SlKGvdpKFlRN~~fAkK~nkk~~~~~   57 (66)
T 4a18_T            1 MAKSKNSTNKNQISKSHRNGIKKPKDHRHISTKGVNPRFLRNRRRAIKNDPSIKKSK   57 (66)
T ss_dssp             -CCCCCCCCHHHHHHHHTTCCCCCCCCSSCCCTTCCHHHHHHHHHHHHHCTTSCCCH
T ss_pred             CCCCccccchhHHHHHHhCCCCCCcccccchhcCCCHHHHHhHHHHHHccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999985543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00