Citrus Sinensis ID: 035456

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------
Protein Sequence
MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITKN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcccHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHEEcc
Coil and Loop (DISEMBL)
MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITKN
Flexible Loop (DISEMBL)
MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITKN
Low Complexity Region (SEG)
MADEGTATCidiilaiilpplGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITKN
Disordered region (IsUnstruct)
******ATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAI***
Disordered Region (DISOPRED)
******A**IDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITKN
Disordered Region (DISEMBL)
MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITKN
Disordered Region (DISPRO)
****GTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITKN
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	58	2.2.26 [Sep-21-2011]
Q8H5T6	56	Hydrophobic protein LTI6A	yes	no	0.965	1.0	0.842	3e-19
Q0DKW8	55	Hydrophobic protein LTI6B	no	no	0.931	0.981	0.833	1e-18
A2Y075	55	Hydrophobic protein LTI6B	N/A	no	0.931	0.981	0.833	1e-18
Q9ZNS6	54	Hydrophobic protein RCI2B	yes	no	0.913	0.981	0.811	5e-18
Q9ZNQ7	54	Hydrophobic protein RCI2A	no	no	0.913	0.981	0.754	8e-17
Q9ARD5	54	Low temperature-induced p	N/A	no	0.913	0.981	0.698	1e-14
P68179	54	Low temperature-induced p	N/A	no	0.896	0.962	0.711	2e-14
P68178	54	Salt stress-induced hydro	N/A	no	0.896	0.962	0.711	2e-14
Q9LRI7	72	Hydrophobic protein OSR8	no	no	0.948	0.763	0.678	6e-13
Q9FE70	52	UPF0057 membrane protein	no	no	0.879	0.980	0.529	5e-11

>sp|Q8H5T6|LTI6A_ORYSJ Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 51/57 (89%), Gaps = 1/57 (1%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          MAD  TATCIDIILAIILPPLGVF KFGC +EFWICLLLT FGY+PGIIYAV+ ITK
Sbjct: 1  MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

Plays a role in the regulation of membrane potential. Could mediate a proton leak.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DKW8|LTI6B_ORYSJ Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query: 4  EGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
           GTA CIDI++AIILPPLGVFLKFGC  EFWICLLLT  GYIPGIIYA+YAITK
Sbjct: 2  AGTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y075|LTI6B_ORYSI Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 48/54 (88%)

Query: 4  EGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
           GTA CIDI++AIILPPLGVFLKFGC  EFWICLLLT  GYIPGIIYA+YAITK
Sbjct: 2  AGTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

Plays a role in the regulation of membrane potential. Could mediate a proton leak.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9ZNS6|RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 50/53 (94%)

Query: 5  GTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
           TAT ++IILAIILPPLGVFLKFGCKVEFWICL+LT+FGY+PGI+YA+Y ITK
Sbjct: 2  STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNQ7|RCI2A_ARATH Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 48/53 (90%)

Query: 5  GTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
           TAT +DII+AI+LPPLGVFL+FGC VEFWICL+LT+ GYIPGIIYA+Y +TK
Sbjct: 2  STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ARD5|LT02_HORVU Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 5  GTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
           +AT I++ILAIILPP+GVFL++G  VEFWICLLLT+ GYIPGIIYAVY +  
Sbjct: 2  ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLVA 54

Hordeum vulgare (taxid: 4513)

>sp|P68179|LT01_HORVU Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 5  GTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAIT 56
          G+AT +++ILAIILPP+GVFL++   VEFWICLLLTI GYIPGIIYAVY + 
Sbjct: 2  GSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

Hordeum vulgare (taxid: 4513)

>sp|P68178|ESI3_LOPEL Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 5  GTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAIT 56
          G+AT +++ILAIILPP+GVFL++   VEFWICLLLTI GYIPGIIYAVY + 
Sbjct: 2  GSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

Lophopyrum elongatum (taxid: 4588)

>sp|Q9LRI7|OSR8_ORYSJ Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 45/56 (80%), Gaps = 1/56 (1%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGC-KVEFWICLLLTIFGYIPGIIYAVYAI 55
          MA     T ++I+LAIILPPLGVFL+FGC  +EF ICLLLTI GY+PGIIYAVY +
Sbjct: 1  MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FE70|RC21_ARATH UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 43/51 (84%)

Query: 7  ATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
           + ++++ AI +PP+GVFL++G  +EFW+CLLLT+F +IPG+IYA+Y +TK
Sbjct: 2  GSFLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
224124306	57	stress-induced hydrophobic peptide [Popu	0.982	1.0	0.912	2e-21
356572886	57	PREDICTED: hydrophobic protein LTI6A-lik	0.982	1.0	0.894	3e-21
169743283	57	cold-induced plasma membrane protein [Mu	0.982	1.0	0.894	4e-21
257219544	57	cold induced plasma membrane protein [Ja	0.982	1.0	0.894	1e-20
255628709	57	unknown [Glycine max]	0.982	1.0	0.877	4e-20
356575291	57	PREDICTED: uncharacterized protein LOC10	0.982	1.0	0.859	5e-20
378792862	726	PM-YC3.6-Lti6b [Binary expression vector	0.896	0.071	0.826	6e-20
356534973	57	PREDICTED: hydrophobic protein LTI6A-lik	0.982	1.0	0.842	1e-19
288300156	57	stress-induced hydrophobic peptide [Clei	0.982	1.0	0.859	1e-19
388501566	54	unknown [Lotus japonicus] gi|388522485|g	0.913	0.981	0.924	2e-19

>gi|224124306|ref|XP_002329990.1| stress-induced hydrophobic peptide [Populus trichocarpa] gi|222871415|gb|EEF08546.1| stress-induced hydrophobic peptide [Populus trichocarpa]

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          MADEGTATCIDI+LAIILPPLGVFLKFGC VEFWICLLLT FGY+PGIIYA+YAITK
Sbjct: 1  MADEGTATCIDILLAIILPPLGVFLKFGCGVEFWICLLLTFFGYLPGIIYAIYAITK 57

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572886|ref|XP_003554596.1| PREDICTED: hydrophobic protein LTI6A-like [Glycine max]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/57 (89%), Positives = 56/57 (98%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          MAD+ TATCIDI+LAIILPPLGVFLK+GCKVEFWICL+LT+FGYIPGIIYAVYAITK
Sbjct: 1  MADDSTATCIDILLAIILPPLGVFLKYGCKVEFWICLVLTLFGYIPGIIYAVYAITK 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169743283|gb|ACA66247.1| cold-induced plasma membrane protein [Musa ABB Group]

 Score =  105 bits (262), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/57 (89%), Positives = 56/57 (98%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          MAD+GTA CIDI+LAIILPPLGVFLKFGC++EFWICLLLT+FGYIPGIIYAVYAITK
Sbjct: 1  MADKGTANCIDILLAIILPPLGVFLKFGCEMEFWICLLLTLFGYIPGIIYAVYAITK 57

Source: Musa ABB Group

Species: Musa x paradisiaca

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257219544|gb|ACV50425.1| cold induced plasma membrane protein [Jatropha curcas]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/57 (89%), Positives = 53/57 (92%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          M  EGTATCIDI+LA+ILPPLGVFLKFGCK EFWICLLLTI GYIPGIIYAVYAITK
Sbjct: 1  MPSEGTATCIDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 57

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255628709|gb|ACU14699.1| unknown [Glycine max]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/57 (87%), Positives = 55/57 (96%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          MAD+ TAT IDI+LAIILPPLGVFLK+GCKVEFWICL+LT+FGYIPGIIYAVYAITK
Sbjct: 1  MADDSTATYIDILLAIILPPLGVFLKYGCKVEFWICLVLTLFGYIPGIIYAVYAITK 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575291|ref|XP_003555775.1| PREDICTED: uncharacterized protein LOC100306281 [Glycine max] gi|255628093|gb|ACU14391.1| unknown [Glycine max]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 49/57 (85%), Positives = 55/57 (96%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          MA +G ATCIDI+LAIILPPLGVFLK+GC+VEFWICL+LT+FGYIPGIIYAVYAITK
Sbjct: 1  MAGDGAATCIDILLAIILPPLGVFLKYGCQVEFWICLVLTLFGYIPGIIYAVYAITK 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378792862|gb|AFC41201.1| PM-YC3.6-Lti6b [Binary expression vector PM-YC3.6-LTI6b]

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/52 (82%), Positives = 50/52 (96%)

Query: 6   TATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
           TAT ++IILAIILPPLGVFLKFGCKVEFWICL+LT+FGY+PGI+YA+Y ITK
Sbjct: 675 TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 726

Source: Binary expression vector PM-YC3.6-LTI6b

Species: Binary expression vector PM-YC3.6-LTI6b

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|356534973|ref|XP_003536025.1| PREDICTED: hydrophobic protein LTI6A-like [Glycine max]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 55/57 (96%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          MA +G ATCIDI+LAIILPPLGVFLK+GC+VEFWICL+LT+FGYIPGIIYAVY+ITK
Sbjct: 1  MAGDGAATCIDILLAIILPPLGVFLKYGCQVEFWICLVLTLFGYIPGIIYAVYSITK 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|288300156|gb|ADC45381.1| stress-induced hydrophobic peptide [Cleistogenes songorica]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/57 (85%), Positives = 53/57 (92%)

Query: 1  MADEGTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          MADEGTA+CIDI++AIILPPLGVFLKFGC  EFWICLLLT  GY+PGIIYAVYAITK
Sbjct: 1  MADEGTASCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYLPGIIYAVYAITK 57

Source: Cleistogenes songorica

Species: Cleistogenes songorica

Genus: Cleistogenes

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501566|gb|AFK38849.1| unknown [Lotus japonicus] gi|388522485|gb|AFK49304.1| unknown [Lotus japonicus]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/53 (92%), Positives = 52/53 (98%)

Query: 5  GTATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          GTATC+DIILAIILPPLGVFL+FGCKVEFWICLLLTI GYIPGIIYA+YAITK
Sbjct: 2  GTATCVDIILAIILPPLGVFLRFGCKVEFWICLLLTILGYIPGIIYAIYAITK 54

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
UNIPROTKB|Q8H5T6	56	LTI6A "Hydrophobic protein LTI	0.965	1.0	0.631	2.3e-14
TAIR|locus:2074419	54	RCI2B "RARE-COLD-INDUCIBLE 2B"	0.620	0.666	0.833	7.9e-14
TAIR|locus:2074509	54	RCI2A "AT3G05880" [Arabidopsis	0.620	0.666	0.777	1.5e-12
TAIR|locus:505006307	54	AT2G38905 "AT2G38905" [Arabido	0.586	0.629	0.794	1e-11
TAIR|locus:2027518	52	AT1G57550 "AT1G57550" [Arabido	0.620	0.692	0.638	2e-10
TAIR|locus:2061501	75	AT2G24040 [Arabidopsis thalian	0.586	0.453	0.685	3.3e-08
TAIR|locus:2118741	73	AT4G30650 "AT4G30650" [Arabido	0.586	0.465	0.742	5.3e-08
TAIR|locus:1006230338	77	AT4G28088 "AT4G28088" [Arabido	0.586	0.441	0.657	8.7e-08
WB|WBGene00020736	57	T23F2.3 [Caenorhabditis elegan	0.586	0.596	0.676	1.8e-07
TAIR|locus:2131964	74	AT4G30660 "AT4G30660" [Arabido	0.586	0.459	0.657	2.3e-07

UNIPROTKB|Q8H5T6 LTI6A "Hydrophobic protein LTI6A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 36/57 (63%), Positives = 39/57 (68%)

Query:     1 MADEGTATCXXXXXXXXXXXXGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
             MAD  TATC            GVF KFGC +EFWICLLLT FGY+PGIIYAV+ ITK
Sbjct:     1 MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

GO:0005886 "plasma membrane" evidence=ISS

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2074419 RCI2B "RARE-COLD-INDUCIBLE 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 30/36 (83%), Positives = 35/36 (97%)

Query:    22 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
             GVFLKFGCKVEFWICL+LT+FGY+PGI+YA+Y ITK
Sbjct:    19 GVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=IMP

TAIR|locus:2074509 RCI2A "AT3G05880" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query:    22 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
             GVFL+FGC VEFWICL+LT+ GYIPGIIYA+Y +TK
Sbjct:    19 GVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0042538 "hyperosmotic salinity response" evidence=IGI;TAS

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009409 "response to cold" evidence=TAS

TAIR|locus:505006307 AT2G38905 "AT2G38905" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 27/34 (79%), Positives = 31/34 (91%)

Query:    22 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAI 55
             GVFL++GC VEFWICLLLTI GYIPGIIYA+Y +
Sbjct:    19 GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2027518 AT1G57550 "AT1G57550" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 23/36 (63%), Positives = 32/36 (88%)

Query:    22 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
             GVFL++G  +EFW+CLLLT+F +IPG+IYA+Y +TK
Sbjct:    17 GVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2061501 AT2G24040 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 24/35 (68%), Positives = 29/35 (82%)

Query:    22 GVFLKFGC-KVEFWICLLLTIFGYIPGIIYAVYAI 55
             GV L+ GC  VEF+ICL+LT  GY+PGIIYA+YAI
Sbjct:    21 GVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55

GO:0005576 "extracellular region" evidence=ISM

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

TAIR|locus:2118741 AT4G30650 "AT4G30650" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 26/35 (74%), Positives = 28/35 (80%)

Query:    22 GVFLKFGC-KVEFWICLLLTIFGYIPGIIYAVYAI 55
             GV LK GC  VEF ICL+LTI GYIPGIIYA+Y I
Sbjct:    21 GVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:1006230338 AT4G28088 "AT4G28088" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 23/35 (65%), Positives = 28/35 (80%)

Query:    22 GVFLKFGC-KVEFWICLLLTIFGYIPGIIYAVYAI 55
             GV L+ GC   EF ICL+LT+ GY+PGIIYA+YAI
Sbjct:    21 GVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAI 55

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00020736 T23F2.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/34 (67%), Positives = 25/34 (73%)

Query:    22 GVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAI 55
             GVFL+ GC     IC+LLTI GYIPGIIYA Y I
Sbjct:    21 GVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2131964 AT4G30660 "AT4G30660" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query:    22 GVFLKFGC-KVEFWICLLLTIFGYIPGIIYAVYAI 55
             GV  + GC  VEF ICL+LTI GY+PGIIYA+Y I
Sbjct:    21 GVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVI 55

GO:0009409 "response to cold" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CS19	PMP3_CRYNB	No assigned EC number	0.6603	0.8620	0.8771	N/A	no
P0CS18	PMP3_CRYNJ	No assigned EC number	0.6603	0.8620	0.8771	yes	no
Q0DKW8	LTI6B_ORYSJ	No assigned EC number	0.8333	0.9310	0.9818	no	no
Q9ARD5	LT02_HORVU	No assigned EC number	0.6981	0.9137	0.9814	N/A	no
Q9ZNS6	RCI2B_ARATH	No assigned EC number	0.8113	0.9137	0.9814	yes	no
P74805	Y1169_SYNY3	No assigned EC number	0.56	0.8448	0.9074	N/A	no
Q75C38	PMP3_ASHGO	No assigned EC number	0.4259	0.9310	0.9818	yes	no
Q6BVN0	PMP3_DEBHA	No assigned EC number	0.675	0.6896	0.7017	yes	no
Q22700	YCU3_CAEEL	No assigned EC number	0.6274	0.8275	0.8421	yes	no
P68178	ESI3_LOPEL	No assigned EC number	0.7115	0.8965	0.9629	N/A	no
P68179	LT01_HORVU	No assigned EC number	0.7115	0.8965	0.9629	N/A	no
P87284	PMP3_YEAST	No assigned EC number	0.3773	0.9137	0.9636	yes	no
A2Y075	LTI6B_ORYSI	No assigned EC number	0.8333	0.9310	0.9818	N/A	no
P0AE43	YQAE_ECOL6	No assigned EC number	0.5	0.8275	0.9230	yes	no
Q8H5T6	LTI6A_ORYSJ	No assigned EC number	0.8421	0.9655	1.0	yes	no
Q871V2	PMP3_NEUCR	No assigned EC number	0.5263	0.9655	0.9824	N/A	no
Q4WYA5	PMP3_ASPFU	No assigned EC number	0.5957	0.8103	0.8245	yes	no
Q9I5W9	Y567_PSEAE	No assigned EC number	0.6	0.6896	0.7692	yes	no
Q9ZNQ7	RCI2A_ARATH	No assigned EC number	0.7547	0.9137	0.9814	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0131002001 stress-induced hydrophobic peptide (57 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	58
pfam01679	51	pfam01679, Pmp3, Proteolipid membrane potential mo	1e-15
COG0401	56	COG0401, COG0401, Uncharacterized homolog of Blt10	8e-10

>gnl|CDD|201919 pfam01679, Pmp3, Proteolipid membrane potential modulator

 Score = 62.8 bits (154), Expect = 1e-15
 Identities = 31/50 (62%), Positives = 37/50 (74%)

Query: 8  TCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK 57
            + IILAI LPPL VFLK GC  +F I +LLT+ GYIPGII+A+Y I K
Sbjct: 2  DILLIILAIFLPPLAVFLKRGCGKDFLINILLTLLGYIPGIIHALYIILK 51

Pmp3 is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Length = 51

>gnl|CDD|223478 COG0401, COG0401, Uncharacterized homolog of Blt101 [Function unknown]

 Score = 48.0 bits (115), Expect = 8e-10
 Identities = 29/49 (59%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 10 IDIILAIILPPLGVFLKFG-CKVEFWICLLLTIFGYIPGIIYAVYAITK 57
          I I+LAI LPPLGVFL+ G    +F I +LLT+ GYIPGII+A+Y I +
Sbjct: 7  IRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILR 55

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	58
COG0401	56	Uncharacterized homolog of Blt101 [Function unknow	99.94
KOG1773	63	consensus Stress responsive protein [General funct	99.93
PF01679	51	Pmp3: Proteolipid membrane potential modulator; In	99.92
PF14373	43	Imm_superinfect: Superinfection immunity protein	92.02

>COG0401 Uncharacterized homolog of Blt101 [Function unknown]

Probab=99.94  E-value=3.4e-27  Score=134.62  Aligned_cols=54  Identities=54%  Similarity=0.933  Sum_probs=51.6

Q ss_pred             chHHHHHHHHHHhhchhHHHhHhc-cchhHHHHHHHHHHHhhhhhhhheeeeecC
Q 035456            5 GTATCIDIILAIILPPLGVFLKFG-CKVEFWICLLLTIFGYIPGIIYAVYAITKN   58 (58)
Q Consensus         5 ~~~~~~~~ilai~lPPlaV~l~~G-~~~~~~inllLtllg~iPg~IhA~yii~~~   58 (58)
                      +.+|+.++++|+|+||++|++++| |++|+++|++||++||+||+|||+|++.|+
T Consensus         2 ~~~d~~~iilaiflPP~~VfL~~G~~~~df~iNiLLtlLg~~PGiiHA~yvi~~~   56 (56)
T COG0401           2 TLMDFIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD   56 (56)
T ss_pred             cHHHHHHHHHHHHcCchhhhhhccCCcHHHHHHHHHHHHHhhhhhHhheEEEEeC
Confidence            578999999999999999999999 579999999999999999999999999986

>KOG1773 consensus Stress responsive protein [General function prediction only]

Probab=99.93  E-value=1.6e-26  Score=134.55  Aligned_cols=56  Identities=50%  Similarity=0.860  Sum_probs=53.3

Q ss_pred             ccchHHHHHHHHHHhhchhHHHhHhc-cchhHHHHHHHHHHHhhhhhhhheeeeecC
Q 035456            3 DEGTATCIDIILAIILPPLGVFLKFG-CKVEFWICLLLTIFGYIPGIIYAVYAITKN   58 (58)
Q Consensus         3 ~~~~~~~~~~ilai~lPPlaV~l~~G-~~~~~~inllLtllg~iPg~IhA~yii~~~   58 (58)
                      +++++++.++++|+|+||+||++++| |++|++||++||++||+||+|||+|++.++
T Consensus         2 ~~~~~~~~~iilai~lPP~aV~l~~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~   58 (63)
T KOG1773|consen    2 ATDCDDILLIILAIFLPPLAVFLRRGGCTVDVLINILLTLLGFIPGIIHAIYIIFFR   58 (63)
T ss_pred             CCcHHHHHHHHHHHHcCchheeeecCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEe
Confidence            56899999999999999999999998 899999999999999999999999999864

>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S

Probab=99.92  E-value=1.9e-25  Score=125.00  Aligned_cols=51  Identities=61%  Similarity=1.093  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHhhchhHHHhHhccchhHHHHHHHHHHHhhhhhhhheeeeec
Q 035456            7 ATCIDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYIPGIIYAVYAITK   57 (58)
Q Consensus         7 ~~~~~~ilai~lPPlaV~l~~G~~~~~~inllLtllg~iPg~IhA~yii~~   57 (58)
                      +|++++++|+++||+||++++||++|+++|++||++||+||++||+|+++|
T Consensus         1 ~~~~~~ilai~lPPlaV~~~~g~~~~~~inl~Ltl~g~iPg~ihA~y~i~~   51 (51)
T PF01679_consen    1 MDILLIILAIFLPPLAVFLKKGCSKDFWINLLLTLLGWIPGVIHALYVIYK   51 (51)
T ss_pred             CcHHHHHHHHHcccHHHHHHcCCchhhHHHHHHHHHHHHHHHHHeeEEEeC
Confidence            378999999999999999999999999999999999999999999999976

pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane

>PF14373 Imm_superinfect: Superinfection immunity protein

Probab=92.02  E-value=0.29  Score=26.40  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=25.0

Q ss_pred             hhHHHhHhc---cchhHHHHHHH--HHHHhhhhhhhhe
Q 035456           20 PLGVFLKFG---CKVEFWICLLL--TIFGYIPGIIYAV   52 (58)
Q Consensus        20 PlaV~l~~G---~~~~~~inllL--tllg~iPg~IhA~   52 (58)
                      |-.+..+++   ...-+.+|++|  |..||+-+.++|+
T Consensus         5 P~iiA~~r~~~~~~~I~~~Nl~lGWT~iGWv~aLiwA~   42 (43)
T PF14373_consen    5 PSIIAFRRKHPNKWAIFLLNLLLGWTGIGWVAALIWAL   42 (43)
T ss_pred             hHHHHHHcCCCcchhhHhHHHHHHhHHHHHHHHHHHhc
Confidence            344445444   35678999999  9999999999886

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00