Citrus Sinensis ID: 035481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF
Secondary Structure (PSIPRED)
ccccccEEEccccccEEEccHHHHcccccccEEEccccccEEcccccccccccccEEEccccEEEEEccHHHHccccccEEEcccccccccccHHcccccccccEEccccccccccccccccccccccEEcccccccccccccccccccccEEccccccccccHHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
EMKELITLDlsrnnfsgelsrpifsgcpsletldlsnnnfygqlfpnymnlTHLRSLLLdnnnfsgkmtdglLSSTLLEVLNVSnnklsgdiphwiGNFSGLWVLLMSENylqgsipvqlgnlvclefidisenslsgsmvslsnlssvehiYLHNNAINGLIPIALLRsstlltldlrdnklfgriphqINELSNLHFLLLRGNYlqgripnqlCQLRKLGimdlshnrlngpipsclgnvsswreviddysllsgf
Flexible Loop (DISEMBL)
EMKELITldlsrnnfsgelsrPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGpipsclgnvsswrEVIDDYSLLSGF
Low Complexity Region (SEG)
EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDIsenslsgsmvslsnlssveHIYLHNNAINGLIPIAllrsstlltldlrdNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF
Disordered region (IsUnstruct)
******************LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL****
Disordered Region (DISOPRED)
EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF
Disordered Region (DISEMBL)
EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF
Disordered Region (DISPRO)
*MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
O82318	960	Probably inactive leucine	no	no	0.895	0.240	0.365	4e-31
Q9LP24	1120	Probable leucine-rich rep	no	no	0.922	0.212	0.383	8e-31
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.910	0.224	0.367	6e-30
O49318	1124	Probable leucine-rich rep	no	no	0.992	0.227	0.344	1e-29
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.976	0.201	0.374	1e-29
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.848	0.201	0.387	6e-29
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.922	0.190	0.345	6e-28
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.941	0.216	0.371	2e-27
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.937	0.235	0.330	3e-27
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.918	0.215	0.372	5e-27

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 136/235 (57%), Gaps = 4/235 (1%)

Query: 8   LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK 67
           L+LS NNFSG + R      P+L TLDLSNN F G+++ +    ++LR L L  N  +G 
Sbjct: 128 LNLSNNNFSGSIPRGFL---PNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGH 184

Query: 68  MTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLE 127
           +   L + + LE L +++N+L+G +P  +G    L  + +  N L G IP Q+G L  L 
Sbjct: 185 VPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLN 244

Query: 128 FIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR 186
            +D+  N+LSG +  SL +L  +E+++L+ N ++G IP ++     L++LD  DN L G 
Sbjct: 245 HLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGE 304

Query: 187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
           IP  + ++ +L  L L  N L G+IP  +  L +L ++ L  NR +G IP+ LG 
Sbjct: 305 IPELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGK 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  134 bits (336), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 133/240 (55%), Gaps = 2/240 (0%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           L  +DLS N  SG +  P F     L   DLS N+  G++ P+  NL +L  L L  N  
Sbjct: 104 LAYVDLSMNLLSGTIP-PQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYL 162

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
           +  +   L +   +  L +S NKL+G IP  +GN   L VL + ENYL G IP +LGN+ 
Sbjct: 163 TSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNME 222

Query: 125 CLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL 183
            +  + +S+N L+GS+ S L NL ++  +YL+ N + G+IP  +    ++  L L  NKL
Sbjct: 223 SMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKL 282

Query: 184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS 243
            G IP  +  L NL  L L  NYL G IP +L  +  +  ++LS+N+L G IPS LGN+ 
Sbjct: 283 TGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLK 342

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 133/237 (56%), Gaps = 2/237 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           + K LI +    N+FSG++S   F   P+L  +DLSNNNF+GQL  N+     L + +L 
Sbjct: 428 DCKSLIRVRFKGNSFSGDISE-AFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILS 486

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN+ +G +   + + T L  L++S+N+++G++P  I N + +  L ++ N L G IP  +
Sbjct: 487 NNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGI 546

Query: 121 GNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
             L  LE++D+S N  S  +  +L+NL  + ++ L  N ++  IP  L + S L  LDL 
Sbjct: 547 RLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLS 606

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
            N+L G I  Q   L NL  L L  N L G+IP     +  L  +D+SHN L GPIP
Sbjct: 607 YNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIP 663

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  130 bits (327), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 142/258 (55%), Gaps = 2/258 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           ++ +L + ++  N  SG L   I     +LE L    NN  G L  +  NL  L +    
Sbjct: 155 KLSQLRSFNICNNKLSGPLPEEI-GDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAG 213

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N+FSG +   +     L++L ++ N +SG++P  IG    L  +++ +N   G IP  +
Sbjct: 214 QNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDI 273

Query: 121 GNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
           GNL  LE + +  NSL G + S + N+ S++ +YL+ N +NG IP  L + S ++ +D  
Sbjct: 274 GNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFS 333

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239
           +N L G IP +++++S L  L L  N L G IPN+L +LR L  +DLS N L GPIP   
Sbjct: 334 ENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGF 393

Query: 240 GNVSSWREVIDDYSLLSG 257
            N++S R++   ++ LSG
Sbjct: 394 QNLTSMRQLQLFHNSLSG 411

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/254 (37%), Positives = 134/254 (52%), Gaps = 2/254 (0%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           +I L+L+    +G +S P F    +L  LDLS+NN  G +     NLT L SL L +N  
Sbjct: 73  VIALNLTGLGLTGSIS-PWFGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQL 131

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
           +G++   L S   +  L + +N+L GDIP  +GN   L +L ++   L G IP QLG LV
Sbjct: 132 TGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLV 191

Query: 125 CLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL 183
            ++ + + +N L G +   L N S +       N +NG IP  L R   L  L+L +N L
Sbjct: 192 RVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSL 251

Query: 184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS 243
            G IP Q+ E+S L +L L  N LQG IP  L  L  L  +DLS N L G IP    N+S
Sbjct: 252 TGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMS 311

Query: 244 SWREVIDDYSLLSG 257
              +++   + LSG
Sbjct: 312 QLLDLVLANNHLSG 325

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 134/245 (54%), Gaps = 26/245 (10%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           E+K L+TLDLS N+FSG L   +   C SLE LDLSNN+F G++   + +L +L  L LD
Sbjct: 98  ELKSLVTLDLSLNSFSGLLPSTL-GNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLD 156

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            NN                        LSG IP  +G    L  L MS N L G+IP  L
Sbjct: 157 RNN------------------------LSGLIPASVGGLIELVDLRMSYNNLSGTIPELL 192

Query: 121 GNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
           GN   LE++ ++ N L+GS+  SL  L ++  +++ NN++ G +         L++LDL 
Sbjct: 193 GNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGSSNCKKLVSLDLS 252

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239
            N   G +P +I   S+LH L++    L G IP+ +  LRK+ ++DLS NRL+G IP  L
Sbjct: 253 FNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQEL 312

Query: 240 GNVSS 244
           GN SS
Sbjct: 313 GNCSS 317

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 125/240 (52%), Gaps = 2/240 (0%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           L  L LS    SGE+   I S C SL+ LDLSNN   GQ+  +   L  L +L L+NN+ 
Sbjct: 339 LKQLFLSETQLSGEIPAEI-SNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSL 397

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
            G ++  + + T L+   + +N L G +P  IG    L ++ + EN   G +PV++GN  
Sbjct: 398 EGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCT 457

Query: 125 CLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL 183
            L+ ID   N LSG +  S+  L  +  ++L  N + G IP +L     +  +DL DN+L
Sbjct: 458 RLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQL 517

Query: 184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS 243
            G IP     L+ L   ++  N LQG +P+ L  L+ L  ++ S N+ NG I    G+ S
Sbjct: 518 SGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSS 577

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           E+K L  LDLS NNFSG +       C  L TLDLS N F  ++     +L  L  L L 
Sbjct: 97  ELKSLQILDLSTNNFSGTIPS-TLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLY 155

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N  +G++ + L     L+VL +  N L+G IP  IG+   L  L M  N   G+IP  +
Sbjct: 156 INFLTGELPESLFRIPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESI 215

Query: 121 GNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
           GN   L+ + +  N L GS+  SL+ L ++  +++ NN++ G +         LLTLDL 
Sbjct: 216 GNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLS 275

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239
            N+  G +P  +   S+L  L++    L G IP+ L  L+ L I++LS NRL+G IP+ L
Sbjct: 276 YNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAEL 335

Query: 240 GNVSS 244
           GN SS
Sbjct: 336 GNCSS 340

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/272 (33%), Positives = 141/272 (51%), Gaps = 30/272 (11%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNL-THLRSLLLDNNN 63
           L  LDLS N F   L + + S   SL+ +D+S N+F+G  FP  + + T L  +   +NN
Sbjct: 103 LQALDLSNNAFESSLPKSL-SNLTSLKVIDVSVNSFFGT-FPYGLGMATGLTHVNASSNN 160

Query: 64  FSGKMTDGLLSSTLLEVLN------------------------VSNNKLSGDIPHWIGNF 99
           FSG + + L ++T LEVL+                        +S N   G +P  IG  
Sbjct: 161 FSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGEL 220

Query: 100 SGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNA 158
           S L  +++  N   G IP + G L  L+++D++  +L+G +  SL  L  +  +YL+ N 
Sbjct: 221 SSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLYQNR 280

Query: 159 INGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL 218
           + G +P  L   ++L+ LDL DN++ G IP ++ EL NL  L L  N L G IP+++ +L
Sbjct: 281 LTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKIAEL 340

Query: 219 RKLGIMDLSHNRLNGPIPSCLGNVS--SWREV 248
             L +++L  N L G +P  LG  S   W +V
Sbjct: 341 PNLEVLELWQNSLMGSLPVHLGKNSPLKWLDV 372

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 121/239 (50%), Gaps = 2/239 (0%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +K L +    +N  SG L   I  GC SL  L L+ N   G+L      L  L  ++L  
Sbjct: 192 LKRLTSFRAGQNMISGSLPSEI-GGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWE 250

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N FSG +   + + T LE L +  N+L G IP  +G+   L  L +  N L G+IP ++G
Sbjct: 251 NEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIG 310

Query: 122 NLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
           NL     ID SEN+L+G + + L N+  +E +YL  N + G IP+ L     L  LDL  
Sbjct: 311 NLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSI 370

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239
           N L G IP     L  L  L L  N L G IP +L     L ++D+S N L+G IPS L
Sbjct: 371 NALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYL 429

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
359483099	1231	PREDICTED: probable LRR receptor-like se	0.934	0.195	0.487	7e-56
357468869	703	Receptor protein kinase-like protein [Me	0.968	0.355	0.488	7e-56
358345705	703	Receptor protein kinase-like protein [Me	0.968	0.355	0.488	8e-56
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.930	0.163	0.497	1e-52
357468861	1016	Receptor-like protein kinase [Medicago t	0.965	0.245	0.458	2e-52
358345693	1011	Receptor-like protein kinase [Medicago t	0.965	0.246	0.458	3e-52
359483101	747	PREDICTED: probable LRR receptor-like se	0.992	0.342	0.465	7e-52
359482735	1097	PREDICTED: receptor-like protein 12-like	0.934	0.219	0.479	9e-51
297743508	826	unnamed protein product [Vitis vinifera]	0.934	0.291	0.479	1e-50
297745128	938	unnamed protein product [Vitis vinifera]	0.934	0.256	0.475	2e-50

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 118/242 (48%), Positives = 162/242 (66%), Gaps = 1/242 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           EM  L +LDLS N+FSGE+ + +      LE L LSNN F+G++F    NLT L  L LD
Sbjct: 538 EMSSLWSLDLSANSFSGEVPKQLLVA-KDLEFLKLSNNKFHGEIFSRDFNLTSLEFLHLD 596

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN F G +++ +  S+ L VL+VSNN +SG+IP WIGN + L  L++  N  +G +P ++
Sbjct: 597 NNQFKGTLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVLGNNSFKGKLPPEI 656

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  LEF+D+S+N+LSGS+ SL ++  ++H++L  N   GLIP   L SS LLTLD+RD
Sbjct: 657 SQLQRLEFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDFLNSSNLLTLDIRD 716

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N+LFG IP+ I+ L  L   LLRGN L G IPNQLC L K+ +MDLS+N  +G IP C G
Sbjct: 717 NRLFGSIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSNNNFSGSIPKCFG 776

Query: 241 NV 242
           ++
Sbjct: 777 HI 778

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 172/252 (68%), Gaps = 2/252 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +MK+L +LDLS N+FSGEL + + +GC +L+ L LSNN  +G + P + N  ++  L L+
Sbjct: 206 KMKKLESLDLSHNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLN 264

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NNNFSG + D L ++T L  L++SNN  SG IP  IG FS +WVLLMS+N L+G IP+++
Sbjct: 265 NNNFSGTLEDVLGNNTGLVFLSISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEI 324

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            N+  L+ +D+S+N L GS+  LS L+ +  +YL  N ++G IP  L   S L  LDLR+
Sbjct: 325 SNMSSLKILDLSQNKLIGSIPKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRE 384

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           NK  G+IPH +++LS L  LLL GN L+G IP QLC+L+K+ IMDLS N LN  IPSC  
Sbjct: 385 NKFSGKIPHWMDKLSELRVLLLGGNKLEGDIPIQLCRLKKIDIMDLSRNMLNASIPSCFR 444

Query: 241 NVS-SWREVIDD 251
           N+S   R+ +DD
Sbjct: 445 NMSFGMRQYVDD 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345705|ref|XP_003636916.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502851|gb|AES84054.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 172/252 (68%), Gaps = 2/252 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +MK+L +LDLS N+FSGEL + + +GC +L+ L LSNN  +G + P + N  ++  L L+
Sbjct: 206 KMKKLESLDLSHNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLN 264

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NNNFSG + D L ++T L  L++SNN  SG IP  IG FS +WVLLMS+N L+G IP+++
Sbjct: 265 NNNFSGTLEDVLGNNTGLVFLSISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEI 324

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            N+  L+ +D+S+N L GS+  LS L+ +  +YL  N ++G IP  L   S L  LDLR+
Sbjct: 325 SNMSSLKILDLSQNKLIGSIPKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRE 384

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           NK  G+IPH +++LS L  LLL GN L+G IP QLC+L+K+ IMDLS N LN  IPSC  
Sbjct: 385 NKFSGKIPHWMDKLSELRVLLLGGNKLEGDIPIQLCRLKKINIMDLSRNMLNASIPSCFR 444

Query: 241 NVS-SWREVIDD 251
           N+S   R+ +DD
Sbjct: 445 NMSFGMRQYVDD 456

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/241 (49%), Positives = 162/241 (67%), Gaps = 1/241 (0%)

Query: 2    MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
            M++L+ LDLS N F+G +   +  GCPSLE L LS N+ +GQ+FP   NL  LR L LD+
Sbjct: 964  MRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDD 1023

Query: 62   NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
            N+FSGK+ D L +S+ LE L VS+N +SG +P WIGN S L  L+M  N L+G IPV+  
Sbjct: 1024 NHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFC 1082

Query: 122  NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
            +L  LE +D+S N+LSGS+ S  + S + H++L  N + G +  A  RS  L TLD+R+N
Sbjct: 1083 SLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNN 1142

Query: 182  KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
             L G IP  I+  S L  LLL+GN+ QG+IP QLCQL K+ I+DLS+N L+G IPSCL  
Sbjct: 1143 NLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNK 1202

Query: 242  V 242
            +
Sbjct: 1203 I 1203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 115/251 (45%), Positives = 167/251 (66%), Gaps = 2/251 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +MK+L  LD S+N+FSGEL + + +GC +L+ L LSNN  +G + P + N  ++  L L+
Sbjct: 474 KMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLN 532

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NNNFSG + D L ++T LE L++SNN  SG IP  IG FS +W LLMS+N L+G IP+++
Sbjct: 533 NNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEI 592

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            ++  L+ +D+S+N L+GS+  LS L+ +  +YL  N ++G IP  L     L  LDLR+
Sbjct: 593 SSIWRLQILDLSQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRE 652

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           NK  G+IP+ +++ S L  LLL GN  +G IP QLC+L+K+ IMDLS N LN  IPSC  
Sbjct: 653 NKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFR 712

Query: 241 NV-SSWREVID 250
           N+    R+ +D
Sbjct: 713 NMLFGMRQYVD 723

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/251 (45%), Positives = 167/251 (66%), Gaps = 2/251 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +MK+L  LD S+N+FSGEL + + +GC +L+ L LSNN  +G + P + N  ++  L L+
Sbjct: 474 KMKQLQLLDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLN 532

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NNNFSG + D L ++T LE L++SNN  SG IP  IG FS +W LLMS+N L+G IP+++
Sbjct: 533 NNNFSGTLEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEI 592

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            ++  L+ +D+S+N L+GS+  LS L+ +  +YL  N ++G IP  L     L  LDLR+
Sbjct: 593 SSIWRLQILDLSQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRE 652

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           NK  G+IP+ +++ S L  LLL GN  +G IP QLC+L+K+ IMDLS N LN  IPSC  
Sbjct: 653 NKFSGKIPNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFR 712

Query: 241 NV-SSWREVID 250
           N+    R+ +D
Sbjct: 713 NMLFGMRQYVD 723

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483101|ref|XP_002269212.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 120/258 (46%), Positives = 168/258 (65%), Gaps = 2/258 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           EM  L  LDLS N+FSGE+ + + +    L  L LSNN F+G++F    NLT LR L L 
Sbjct: 248 EMSSLWALDLSTNSFSGEVPKQLLA-TKDLWILKLSNNKFHGEIFSRDFNLTGLRYLYLG 306

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN F+G +++ +  S+ L  L+VSNN +SG+IP+WIGN + L  L++  N  +G +P ++
Sbjct: 307 NNQFTGTLSNVISRSSWLWELDVSNNYMSGEIPNWIGNMTYLTTLVLGNNSFKGKLPPEI 366

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  LEF+D+S+N+LSGS+ SL ++  +EH++L  N   GLIP   L SS LLTLD+RD
Sbjct: 367 SQLQSLEFLDVSQNALSGSLPSLKSMKYLEHLHLQGNMFIGLIPRDFLNSSYLLTLDIRD 426

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N+LFG IP+ I+ L  L  LLLRGN L G IPN LC L ++ +MDLS+N  +GPIP C G
Sbjct: 427 NRLFGSIPNSISALLKLKILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFG 486

Query: 241 NVSSWREVIDDYSLLSGF 258
           ++  + E   +Y     F
Sbjct: 487 HI-QFGETKKEYYEFGQF 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 116/242 (47%), Positives = 163/242 (67%), Gaps = 1/242 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           E++ L  LDLS NNFSGE+ + + +    LE L LSNN F+G++F    NLT L  L L 
Sbjct: 589 ELRALQILDLSTNNFSGEVPKQLLAA-KDLEILKLSNNKFHGEIFSRDFNLTGLLCLYLG 647

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN F+G +++ +   + L VL+VSNN +SG+IP WIGN + L  L+M  N  +G +P ++
Sbjct: 648 NNQFTGTLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLLRTLVMGNNNFKGKLPPEI 707

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  +EF+D+S+N+LSGS+ SL ++  +EH++L  N   GLIP   L SS LLTLD+R+
Sbjct: 708 SQLQRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRE 767

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N+LFG IP+ I+ L  L  LLLRGN L G IPN LC L ++ +MDLS+N  +GPIP C G
Sbjct: 768 NRLFGSIPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFG 827

Query: 241 NV 242
           ++
Sbjct: 828 HI 829

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743508|emb|CBI36375.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/242 (47%), Positives = 163/242 (67%), Gaps = 1/242 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           E++ L  LDLS NNFSGE+ + + +    LE L LSNN F+G++F    NLT L  L L 
Sbjct: 413 ELRALQILDLSTNNFSGEVPKQLLAA-KDLEILKLSNNKFHGEIFSRDFNLTGLLCLYLG 471

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN F+G +++ +   + L VL+VSNN +SG+IP WIGN + L  L+M  N  +G +P ++
Sbjct: 472 NNQFTGTLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLLRTLVMGNNNFKGKLPPEI 531

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  +EF+D+S+N+LSGS+ SL ++  +EH++L  N   GLIP   L SS LLTLD+R+
Sbjct: 532 SQLQRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRE 591

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N+LFG IP+ I+ L  L  LLLRGN L G IPN LC L ++ +MDLS+N  +GPIP C G
Sbjct: 592 NRLFGSIPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFG 651

Query: 241 NV 242
           ++
Sbjct: 652 HI 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745128|emb|CBI38967.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 115/242 (47%), Positives = 162/242 (66%), Gaps = 1/242 (0%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           EM  L  LDLS NNFSGE+ + + +    L  L LSNN F+G++F    NLT L  L LD
Sbjct: 495 EMISLRVLDLSANNFSGEVPKQLLA-TKHLAILKLSNNKFHGEIFSRDFNLTQLGILYLD 553

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN F+G +++ +  S+ L VL+VSNN +SG+IP  IGN + L  L++S N  +G +P+++
Sbjct: 554 NNQFTGTLSNVISRSSSLRVLDVSNNYMSGEIPSQIGNMTYLTTLVLSNNSFKGKLPLEI 613

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  LEF+D+S+N++SGS+ SL ++  ++H++L  N   GLIP   L SS LLTLD+RD
Sbjct: 614 SQLQGLEFLDVSQNAISGSLPSLKSMEYLKHLHLQGNMFTGLIPRDFLNSSNLLTLDMRD 673

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N+LFG IP+ I  L  +  LLLRGN   G IPN LC L ++ +MDLS+N  +GPIP C G
Sbjct: 674 NRLFGSIPNSIFALLEIRILLLRGNLFSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFG 733

Query: 241 NV 242
           ++
Sbjct: 734 HI 735

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.903	0.241	0.411	1.6e-45
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.941	0.259	0.410	5.9e-43
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.961	0.248	0.391	5.7e-40
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.996	0.237	0.389	6.8e-40
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.922	0.267	0.396	2.1e-37
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.976	0.258	0.388	1.7e-35
TAIR|locus:2019652	302	RLP16 "receptor like protein 1	0.922	0.788	0.367	1.9e-35
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.937	0.216	0.331	5e-27
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.906	0.288	0.312	1.6e-20
TAIR|locus:2043540	960	AT2G25790 [Arabidopsis thalian	0.961	0.258	0.339	1.7e-26

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
 Identities = 97/236 (41%), Positives = 135/236 (57%)

Query:     8 LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK 67
             +DLSRN+F G L R   +GC S+  L LS+N   G++FP   N T++  L +DNN F+GK
Sbjct:   467 MDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGK 526

Query:    68 MTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLE 127
             +  GL S   LE+L++SNN L+G IP WIG    L  LL+S+N+L+G IP+ L N   L+
Sbjct:   527 IGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQ 586

Query:   128 FIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKLFGRI 187
              +D+                    + L +N ++G IP                N+  G+I
Sbjct:   587 LLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIP--DTLLANVEILDLRNNRFSGKI 644

Query:   188 PHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS 243
             P  IN + N+  LLLRGN   G+IP+QLC L  + ++DLS+NRLNG IPSCL N S
Sbjct:   645 PEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTS 699

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 5.9e-43, P = 5.9e-43
 Identities = 101/246 (41%), Positives = 139/246 (56%)

Query:     1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
             EMK +  LDLS NNFSG+L R   +GC S+  L LS+N F G+  P   N   L  L +D
Sbjct:   436 EMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMD 495

Query:    61 NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
             NN F+G +  GL +ST+L +L++SNN LSG IP W+  F  L  +L+S N+L+G+IP  L
Sbjct:   496 NNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSL 555

Query:   121 GNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXXXX 180
               +  L F+D+                   +++LHNN   G  PI               
Sbjct:   556 LGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTG--PIPDTLLKSVQILDLRN 613

Query:   181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
             NKL G IP Q ++  +++ LLL+GN L G IP +LC L  + ++DLS N+LNG IPSCL 
Sbjct:   614 NKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLS 672

Query:   241 NVSSWR 246
             N+S  R
Sbjct:   673 NLSFGR 678

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 5.7e-40, P = 5.7e-40
 Identities = 99/253 (39%), Positives = 134/253 (52%)

Query:     2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             MK +  LDLS N F G+L R    GC +L  L LS+N   G++FP   N T L  + +DN
Sbjct:   475 MKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDN 534

Query:    62 NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
             N F+G +  G  S   L VL++SNNKL+G IP WIG   GL+ L +S N L+G IP  L 
Sbjct:   535 NLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLF 594

Query:   122 NLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYL-HNNAINGLIPIAXXXXXXXXXXXXXX 180
             N+  L+ +D+                    + L  NN ++G+IP                
Sbjct:   595 NISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIP--DTLLLNVIVLDLRN 652

Query:   181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
             N+L G +P  IN   N+  LLLRGN   G+IP+Q C L  + ++DLS+N+ NG IPSCL 
Sbjct:   653 NRLSGNLPEFINT-QNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLS 711

Query:   241 NVS-SWREVIDDY 252
             N S   R+  D Y
Sbjct:   712 NTSFGLRKGDDSY 724

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 101/259 (38%), Positives = 134/259 (51%)

Query:     1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
             EMK L  LD+S N   G+L     SGC SL  L LSNN   G++F  + NLT L  L LD
Sbjct:   575 EMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLD 634

Query:    61 NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
              NNF+G + +GLL S  L +L++S+N+ SG +P WIG  S L  L MS N L+G  P  L
Sbjct:   635 GNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-L 693

Query:   121 GNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXXXX 180
                  +E +DI                    + L NN   GL+P                
Sbjct:   694 RQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRN 753

Query:   181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
             N   G+I + I++ S L  LLLR N  Q  IP ++CQL ++G++DLSHN+  GPIPSC  
Sbjct:   754 NNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFS 813

Query:   241 NVSSWREVID-DYSLLSGF 258
              +S   E  D   SL++ F
Sbjct:   814 KMSFGAEQNDRTMSLVADF 832

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-37, P = 2.1e-37
 Identities = 96/242 (39%), Positives = 135/242 (55%)

Query:     2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             M+ +  +DLS NNFSG+L R +F+GC SL  L LS+N F G +     + T L +L++DN
Sbjct:   396 MENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDN 455

Query:    62 NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
             N F+GK+   LL+  +L V+++SNN L+G IP W+GNF  L VL +S N LQG+IP  L 
Sbjct:   456 NMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLF 514

Query:   122 NLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXXXXN 181
             N+  L  +D+                    + LHNN + G IP                N
Sbjct:   515 NIPYLWLLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIP--DTLWYGLRLLDLRNN 572

Query:   182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
             KL G IP       ++  +LLR N L G+IP +LC L  + ++D +HNRLN  IPSC+ N
Sbjct:   573 KLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTN 631

Query:   242 VS 243
             +S
Sbjct:   632 LS 633

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.7e-35, P = 1.7e-35
 Identities = 101/260 (38%), Positives = 142/260 (54%)

Query:     1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
             EM ++  LDLS NNFSGEL R + +GC SL TL LS+N+F G + P    LT L  L + 
Sbjct:   476 EMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMH 535

Query:    61 NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIG-NFSGLWVLLMSENYLQGSIPVQ 119
             NN F+G++  GL +   L + + SNN+L+G I   I  + S L +LL+S N L+G++P  
Sbjct:   536 NNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPS 595

Query:   120 LGNLVCLEFIDIXXXXXXXXX-XXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
             L  +  L F+D+                     I+LHNN+  G +P+             
Sbjct:   596 LLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAYILDLRN 655

Query:   179 XXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSC 238
               NKL G IP  +N    +  LLLRGN L G IP +LC L  + ++DLS N+LNG IP C
Sbjct:   656 --NKLSGSIPQFVNT-GKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPC 712

Query:   239 LGNVSSWREVIDDYSLLSGF 258
             L ++S+  E+ +   L SGF
Sbjct:   713 LNHLST--ELGEGIGL-SGF 729

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019652 RLP16 "receptor like protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 89/242 (36%), Positives = 126/242 (52%)

Query:     4 ELIT-LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
             E+I  LD+S N+F G+L R    GC SL  L LS+     ++FP   N   +  L +DNN
Sbjct:    20 EMIEFLDISHNSFHGKLPRSFLKGCDSLIVLKLSHKKLSEEVFPEASNFFSILELSMDNN 79

Query:    63 NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
              F+GK+  GL S   L +L++SNN LSG IP W      L  L +S N L+G +P+ L N
Sbjct:    80 LFTGKIGRGLQSLRSLIMLDISNNNLSGVIPSWFDQLQDLHSLQISNNLLEGEVPISLFN 139

Query:   123 LVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYL-HNNAINGLIPIAXXXXXXXXXXXXXXN 181
             +  L+ + +                    + L  +N ++G+IP                N
Sbjct:   140 MSSLQLLALSANSLSGDLPQAISGYGALKVLLLRDNNLSGVIP-DTLLGKNIIVLDLRNN 198

Query:   182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
             +L G IP  IN    +  LLLRGN L G IP +LC +R + ++DL++N+LNG IPSCL N
Sbjct:   199 RLSGNIPEFINT-QYIRILLLRGNNLTGSIPRRLCAVRSIHLLDLANNKLNGSIPSCLRN 257

Query:   242 VS 243
              S
Sbjct:   258 AS 259

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 5.0e-27, P = 5.0e-27
 Identities = 81/244 (33%), Positives = 116/244 (47%)

Query:     2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             +  L  +DLS N  SG +  P F     L   DLS N+  G++ P+  NL +L  L L  
Sbjct:   101 LSNLAYVDLSMNLLSGTIP-PQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQ 159

Query:    62 NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
             N  +  +   L +   +  L +S NKL+G IP  +GN   L VL + ENYL G IP +LG
Sbjct:   160 NYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELG 219

Query:   122 NLVCLEFIDIXXXXXXXXXXXXXXXXXXXHI-YLHNNAINGLIPIAXXXXXXXXXXXXXX 180
             N+  +  + +                    + YL+ N + G+IP                
Sbjct:   220 NMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQ 279

Query:   181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
             NKL G IP  +  L NL  L L  NYL G IP +L  +  +  ++LS+N+L G IPS LG
Sbjct:   280 NKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLG 339

Query:   241 NVSS 244
             N+ +
Sbjct:   340 NLKN 343

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 75/240 (31%), Positives = 110/240 (45%)

Query:     5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
             L+ LDLS N   G    P +     +  + LS+N   G L PN      L  L+L  NNF
Sbjct:   351 LVYLDLSINRLEGRF--PKWLADLKIRNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNF 408

Query:    65 SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
             SG++ D +  S ++ VL +S N  SG +P  I     L +L +S+N L G  P +     
Sbjct:   409 SGQIPDTIGESQVM-VLMLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPES 466

Query:   125 CLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXXXXNKLF 184
              LE++DI                    +   NN  +G  P                NK+ 
Sbjct:   467 YLEWLDISSNEFSGDVPAYFGGSTSMLLMSQNN-FSGEFPQNFRNLSYLIRLDLHDNKIS 525

Query:   185 GRIPHQINELSN-LHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS 243
             G +   I++LS+ +  L LR N L+G IP  +  L  L ++DLS N L+G +PS LGN++
Sbjct:   526 GTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLT 585

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 87/256 (33%), Positives = 126/256 (49%)

Query:     2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTH---LRSLL 58
             +  +++LDLS  N SG++        P L+T++LSNNN  G + P+ +  T    LR L 
Sbjct:    71 ISRVVSLDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPI-PHDIFTTSSPSLRYLN 129

Query:    59 LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
             L NNNFSG +  G L +  L  L++SNN  +G+I + IG FS L VL +  N L G +P 
Sbjct:   130 LSNNNFSGSIPRGFLPN--LYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPG 187

Query:   119 QLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXH-IYLHNNAINGLIPIAXXXXXXXXXXX 177
              LGNL  LEF+ +                     IYL  N ++G IP             
Sbjct:   188 YLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLD 247

Query:   178 XXXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
                N L G IP  + +L  L ++ L  N L G+IP  +  L+ L  +D S N L+G IP 
Sbjct:   248 LVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPE 307

Query:   238 CLGNVSSWREVIDDYS 253
              +  + S  E++  +S
Sbjct:   308 LVAQMQSL-EILHLFS 322

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032745001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (749 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-43
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-21
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  157 bits (398), Expect = 1e-43
 Identities = 97/234 (41%), Positives = 137/234 (58%), Gaps = 5/234 (2%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTH-LRSLLLDNNN 63
           ++++DLS  N SG++S  IF   P ++T++LSNN   G +  +    +  LR L L NNN
Sbjct: 71  VVSIDLSGKNISGKISSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 64  FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNL 123
           F+G +  G +    LE L++SNN LSG+IP+ IG+FS L VL +  N L G IP  L NL
Sbjct: 130 FTGSIPRGSIP--NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 124 VCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182
             LEF+ ++ N L G +   L  + S++ IYL  N ++G IP  +   ++L  LDL  N 
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           L G IP  +  L NL +L L  N L G IP  +  L+KL  +DLS N L+G IP
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  146 bits (370), Expect = 7e-40
 Identities = 87/234 (37%), Positives = 135/234 (57%), Gaps = 4/234 (1%)

Query: 8   LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK 67
           L+LS NNF+G + R      P+LETLDLSNN   G++  +  + + L+ L L  N   GK
Sbjct: 123 LNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 68  MTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLE 127
           + + L + T LE L +++N+L G IP  +G    L  + +  N L G IP ++G L  L 
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 128 FIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR 186
            +D+  N+L+G +  SL NL ++++++L+ N ++G IP ++     L++LDL DN L G 
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           IP  + +L NL  L L  N   G+IP  L  L +L ++ L  N+ +G IP  LG
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  118 bits (298), Expect = 3e-30
 Identities = 92/281 (32%), Positives = 139/281 (49%), Gaps = 25/281 (8%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +++ L  L L  NNF+G++   + S  P L+ L L +N F G++  N     +L  L L 
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            NN +G++ +GL SS  L  L + +N L G+IP  +G    L  + + +N   G +P + 
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424

Query: 121 GNLVCLEFIDISENSLSGS-------MVSLSNLS-----------------SVEHIYLHN 156
             L  + F+DIS N+L G        M SL  LS                  +E++ L  
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484

Query: 157 NAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC 216
           N  +G +P  L   S L+ L L +NKL G IP +++    L  L L  N L G+IP    
Sbjct: 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 217 QLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257
           ++  L  +DLS N+L+G IP  LGNV S  +V   ++ L G
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  115 bits (289), Expect = 4e-29
 Identities = 98/271 (36%), Positives = 129/271 (47%), Gaps = 30/271 (11%)

Query: 5   LITLDLSRNNFSGELSRPI--FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
           L TLDLS N  SGE+   I  FS   SL+ LDL  N   G++  +  NLT L  L L +N
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFS---SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
              G++   L     L+ + +  N LSG+IP+ IG  + L  L +  N L G IP  LGN
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 123 LVCLEF------------------------IDISENSLSGSMVSL-SNLSSVEHIYLHNN 157
           L  L++                        +D+S+NSLSG +  L   L ++E ++L +N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ 217
              G IP+AL     L  L L  NK  G IP  + + +NL  L L  N L G IP  LC 
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 218 LRKLGIMDLSHNRLNGPIPSCLGNVSSWREV 248
              L  + L  N L G IP  LG   S R V
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (262), Expect = 2e-25
 Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 7/236 (2%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPS--LETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
           L  LDLS NN +GE+   +   C S  L  L L +N+  G++  +      LR + L +N
Sbjct: 358 LTVLDLSTNNLTGEIPEGL---CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
           +FSG++        L+  L++SNN L G I     +   L +L ++ N   G +P   G+
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474

Query: 123 LVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
              LE +D+S N  SG++   L +LS +  + L  N ++G IP  L     L++LDL  N
Sbjct: 475 KR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
           +L G+IP   +E+  L  L L  N L G IP  L  +  L  +++SHN L+G +PS
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (257), Expect = 7e-25
 Identities = 83/265 (31%), Positives = 129/265 (48%), Gaps = 26/265 (9%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +MK L  + L  NN SGE+   I  G  SL  LDL  NN  G +  +  NL +L+ L L 
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWI-------------GNFSG------ 101
            N  SG +   + S   L  L++S+N LSG+IP  +              NF+G      
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Query: 102 -----LWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLH 155
                L VL +  N   G IP  LG    L  +D+S N+L+G +   L +  ++  + L 
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 156 NNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQL 215
           +N++ G IP +L    +L  + L+DN   G +P +  +L  ++FL +  N LQGRI ++ 
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 216 CQLRKLGIMDLSHNRLNGPIPSCLG 240
             +  L ++ L+ N+  G +P   G
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFG 473

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.4 bits (232), Expect = 1e-21
 Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 26/209 (12%)

Query: 50  NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFS-GLWVLLMS 108
           N + + S+ L   N SGK++  +     ++ +N+SNN+LSG IP  I   S  L  L +S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 109 ENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALL 168
            N   GSIP   G++  LE +D+S                       NN ++G IP  + 
Sbjct: 127 NNNFTGSIPR--GSIPNLETLDLS-----------------------NNMLSGEIPNDIG 161

Query: 169 RSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH 228
             S+L  LDL  N L G+IP+ +  L++L FL L  N L G+IP +L Q++ L  + L +
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 229 NRLNGPIPSCLGNVSSWREVIDDYSLLSG 257
           N L+G IP  +G ++S   +   Y+ L+G
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.1 bits (226), Expect = 8e-21
 Identities = 58/142 (40%), Positives = 75/142 (52%), Gaps = 2/142 (1%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +M  L  L L+RN F G L  P   G   LE LDLS N F G +     +L+ L  L L 
Sbjct: 450 DMPSLQMLSLARNKFFGGL--PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N  SG++ D L S   L  L++S+N+LSG IP        L  L +S+N L G IP  L
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Query: 121 GNLVCLEFIDISENSLSGSMVS 142
           GN+  L  ++IS N L GS+ S
Sbjct: 568 GNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 31/82 (37%), Positives = 47/82 (57%)

Query: 57  LLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI 116
           L LDN    G + + +     L+ +N+S N + G+IP  +G+ + L VL +S N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 117 PVQLGNLVCLEFIDISENSLSG 138
           P  LG L  L  ++++ NSLSG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 8e-11
 Identities = 32/89 (35%), Positives = 47/89 (52%)

Query: 33  LDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDI 92
           L L N    G +  +   L HL+S+ L  N+  G +   L S T LEVL++S N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 93  PHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           P  +G  + L +L ++ N L G +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 81  LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM 140
           L + N  L G IP+ I     L  + +S N ++G+IP  LG++  LE +D+S NS +GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 141 -VSLSNLSSVEHIYLHNNAINGLIPIAL 167
             SL  L+S+  + L+ N+++G +P AL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 7e-10
 Identities = 29/73 (39%), Positives = 41/73 (56%)

Query: 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL 202
           +S L  ++ I L  N+I G IP +L   ++L  LDL  N   G IP  + +L++L  L L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 203 RGNYLQGRIPNQL 215
            GN L GR+P  L
Sbjct: 498 NGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 32/82 (39%), Positives = 49/82 (59%)

Query: 176 LDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI 235
           L L +  L G IP+ I++L +L  + L GN ++G IP  L  +  L ++DLS+N  NG I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 236 PSCLGNVSSWREVIDDYSLLSG 257
           P  LG ++S R +  + + LSG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 30/87 (34%), Positives = 47/87 (54%)

Query: 154 LHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPN 213
           L N  + G IP  + +   L +++L  N + G IP  +  +++L  L L  N   G IP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 214 QLCQLRKLGIMDLSHNRLNGPIPSCLG 240
            L QL  L I++L+ N L+G +P+ LG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 141 VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELS-NLHF 199
           ++ +N S V  I L    I+G I  A+ R   + T++L +N+L G IP  I   S +L +
Sbjct: 63  ITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 200 LLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWR 246
           L L  N   G IP     +  L  +DLS+N L+G IP+ +G+ SS +
Sbjct: 123 LNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 24/68 (35%), Positives = 42/68 (61%)

Query: 30  LETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLS 89
           L++++LS N+  G + P+  ++T L  L L  N+F+G + + L   T L +LN++ N LS
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 90  GDIPHWIG 97
           G +P  +G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 29  SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKL 88
            L +LDL+ N     +    + LT+L SL LDNNN +       L  + L+ L++S+NK+
Sbjct: 94  PLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 89  SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSS 148
              +P  + N   L  L +S N L   +P  L NL  L  +D+S N +S     +  LS+
Sbjct: 153 E-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA 210

Query: 149 VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ 208
           +E + L NN+I   +  +L     L  L+L +NKL   +P  I  LSNL  L L  N  Q
Sbjct: 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN--Q 266

Query: 209 GRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
               + L  L  L  +DLS N L+  +P 
Sbjct: 267 ISSISSLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 8   LDLSRNNFSGELSRPI---FSGCPSLETLDLSNNNFYGQ----LFPNYMNLTHLRSLLLD 60
           L L RN   G     +         L+ L+L+NN         L        +L  L L+
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 61  NNNF----SGKMTDGLLSSTLLEVLNVSNNKLS 89
           NN      +  + + L S   LEVLN+ +N L+
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           ++ L +++LS N+  G +  P      SLE LDLS N+F G +  +   LT LR L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 62  NNFSGKMTDGLLSSTLLE--VLNVSNN 86
           N+ SG++    L   LL     N ++N
Sbjct: 500 NSLSGRVP-AALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 42/212 (19%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSN--NNFYGQ-----------LFPN 47
            M EL+ +DLS N    E    + +   ++  L + N  + F G+           L   
Sbjct: 28  MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKA 87

Query: 48  YMNLTHLRSLLLDNNNFSGK----MTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG-- 101
            +    L+ + L +N F  +    + D + SST L  L ++NN L        G  +G  
Sbjct: 88  LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL--------GPIAGGR 139

Query: 102 LWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSL-SGSMVSLS-------NLSSVEHIY 153
           +   L    Y +     +  +   LE +    N L +GS    +       NL  V+   
Sbjct: 140 IGKALFHLAYNK-----KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ 194

Query: 154 --LHNNAINGLIPIALLRSSTLLTLDLRDNKL 183
             +    +  L  + L  S +L  LDL+DN  
Sbjct: 195 NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226

Length = 388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.73
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.56
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.36
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.36
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.14
PLN03150	623	hypothetical protein; Provisional	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.0
PLN03150	623	hypothetical protein; Provisional	98.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.85
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.44
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
KOG4341	483	consensus F-box protein containing LRR [General fu	98.18
PRK15386	426	type III secretion protein GogB; Provisional	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.9
KOG4341	483	consensus F-box protein containing LRR [General fu	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.57
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.24
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.19
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.06
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.66
smart00370	26	LRR Leucine-rich repeats, outliers.	95.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.66
KOG4308	478	consensus LRR-containing protein [Function unknown	95.27
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.42
KOG4308	478	consensus LRR-containing protein [Function unknown	88.45
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.2
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.15
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2.5e-31  Score=238.10  Aligned_cols=252  Identities=35%  Similarity=0.487  Sum_probs=136.9

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|++.+.+|...|..+++|++|++++|.+.+..+.  ..+++|++|++++|.+....+..+..+++|++|
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence            677888888888877677777776777777777777766543322  234556666666665554445555556666666


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeeccccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      ++++|.+....|..+.++++|++|++.+|.+.+..|..+..+++|+.|+++.|.+.. .+..+..+++|++|++++|.++
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            666665554555555555556666665555555555555555555555555555442 3333444555555555555544


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG  240 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~  240 (258)
                      +..+..+..+++|+.|++++|.+....|..+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+.
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            44444444445555555555544444444444444444444444444444444444444444444444444444444444


Q ss_pred             cccchhhhhhccccc
Q 035481          241 NVSSWREVIDDYSLL  255 (258)
Q Consensus       241 ~l~~L~~l~l~~~~~  255 (258)
                      .+++|+.|++++|.+
T Consensus       330 ~l~~L~~L~L~~n~l  344 (968)
T PLN00113        330 SLPRLQVLQLWSNKF  344 (968)
T ss_pred             cCCCCCEEECcCCCC
Confidence            444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=7.2e-31  Score=235.15  Aligned_cols=251  Identities=35%  Similarity=0.561  Sum_probs=140.2

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|++++.+|..   .+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  193 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL  193 (968)
T ss_pred             CCCCCEEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence            456777777777666555532   35566666666666655555556666666666666666554555555566666666


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeeccccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      ++++|.+....|..+..+++|+.+++.+|.+.+..|..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.+.
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            666666555555555566666666666666555555555556666666666555542 3334445555555555555555


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG  240 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~  240 (258)
                      +..+..+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  353 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG  353 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence            44444455555555555555555444444455555555555555555444444444555555555555555444444444


Q ss_pred             cccchhhhhhccccc
Q 035481          241 NVSSWREVIDDYSLL  255 (258)
Q Consensus       241 ~l~~L~~l~l~~~~~  255 (258)
                      .+++|+.|++++|.+
T Consensus       354 ~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        354 KHNNLTVLDLSTNNL  368 (968)
T ss_pred             CCCCCcEEECCCCee
Confidence            455555555554444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-30  Score=205.76  Aligned_cols=254  Identities=22%  Similarity=0.212  Sum_probs=166.6

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      ++|+|+.+++.+|.++ .+|... .-..+++.|+|.+|.|+++....++.++.|+.||++.|.++......+..-.++++
T Consensus       100 nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~  177 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK  177 (873)
T ss_pred             cCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence            3566666666666665 555422 12234666677777666666666666777777777777776555555555567777


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecccc
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAI  159 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~  159 (258)
                      |++++|.++..-...|.++.+|..+.+..|.++......|.++++|+.|++..|.+... ...|..+++++.+.+..|.+
T Consensus       178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence            77777777766566666777777777777777755555677788888888888877654 45666777777777777777


Q ss_pred             cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccc
Q 035481          160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL  239 (258)
Q Consensus       160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~  239 (258)
                      .....++|..+.++++|+|+.|++.....+++.+++.|+.|++++|.+...-++.-.-+++|++|+|++|+++..-+..|
T Consensus       258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence            76666777777777777777777665555666666666666666666655555555555666666666666664333456


Q ss_pred             ccccchhhhhhcccccC
Q 035481          240 GNVSSWREVIDDYSLLS  256 (258)
Q Consensus       240 ~~l~~L~~l~l~~~~~~  256 (258)
                      ..+.+|++|++++|.++
T Consensus       338 ~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  338 RVLSQLEELNLSHNSID  354 (873)
T ss_pred             HHHHHhhhhcccccchH
Confidence            66666666666666553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=1.8e-30  Score=206.85  Aligned_cols=202  Identities=26%  Similarity=0.184  Sum_probs=102.0

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      ++++|+|++|+++ .+..+.|.++.+|..|.|+.|.++...+..|.++++|+.|++..|.+.-...-.|..+++|+.+.+
T Consensus       174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            3445555555554 444444555555555555555554444444555555555555555444222333444444444444


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeeccccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      ..|++.......|..+.++++|++..|.++..-..++.+++.|+.|++++|.+..+ +..+..+++|+.|++++|.++..
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            44444444444455555566666666665544445555666666666666666543 34455566666666666666555


Q ss_pred             CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCe
Q 035481          163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNY  206 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (258)
                      .+..+..+..|++|.|++|.+......+|..+.+|++|+++.|.
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            44444444444455554444432222333333344444444433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=4.1e-26  Score=184.17  Aligned_cols=248  Identities=28%  Similarity=0.338  Sum_probs=149.4

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +..|++||+|+|++. ++|.+. ...+++-.|++++|+|..+.-+-|.++.-|-.|++++|.+. ..|.....+..|++|
T Consensus       102 l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL  178 (1255)
T ss_pred             cccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence            345666667776666 566553 55666666677766665554455556666666666666665 344555666666666


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccc-cCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYL-QGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      .+++|.+.......+..+++|+.|.+++++- ...+|..+..+.+|..+|++.|.+...|+.+..+++|+.|++++|.++
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence            6666655422222333444555555554432 124455566666777777777777777777777777777777777776


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec-ccCCccccCCCcccEEEccCceeecCCCccc
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ-GRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL  239 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~  239 (258)
                      .. ......+.++++|+++.|.++ ..|.++..+++|+.|.+.+|++. +-+|..++.+..|+.+..++|.+. ..|+.+
T Consensus       259 eL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl  335 (1255)
T KOG0444|consen  259 EL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL  335 (1255)
T ss_pred             ee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh
Confidence            32 333444566777777777765 66666777777777766666554 233555555555555555555554 556666


Q ss_pred             ccccchhhhhhccccc
Q 035481          240 GNVSSWREVIDDYSLL  255 (258)
Q Consensus       240 ~~l~~L~~l~l~~~~~  255 (258)
                      ..|..|+.|.+++|.+
T Consensus       336 cRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhhHHHHHhcccccce
Confidence            6666666666665554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=1.2e-25  Score=181.53  Aligned_cols=246  Identities=29%  Similarity=0.383  Sum_probs=217.7

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      .++-.|++|+|++. .+|...|-++..|-+||+++|.+. ..|+-+.++..|++|.+++|.+.......+..+.+|..|.
T Consensus       126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh  203 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH  203 (1255)
T ss_pred             cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence            35678999999998 999999999999999999999986 5677888899999999999988755556666778888888


Q ss_pred             ccCcccc-CCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481           83 VSNNKLS-GDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        83 l~~~~~~-~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      +++..-+ ..+|..+..+.+|..++++.|.+. ..|+.+..+.+|+.|++++|.+++.........++++|+++.|+++ 
T Consensus       204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-  281 (1255)
T KOG0444|consen  204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-  281 (1255)
T ss_pred             cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-
Confidence            8887654 578888999999999999999998 7899999999999999999999998888888899999999999998 


Q ss_pred             cCccchhcCCCceEEEccCCccc-CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLF-GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG  240 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~  240 (258)
                      ..|.++..++.|+.|.+.+|.++ +-+|..+..+..|+++...+|.+. ..|..+++|..|+.|.|+.|++. .+|+.+.
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH  359 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH  359 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence            56788889999999999999885 468888899999999999999886 88999999999999999999987 6899999


Q ss_pred             cccchhhhhhcccc
Q 035481          241 NVSSWREVIDDYSL  254 (258)
Q Consensus       241 ~l~~L~~l~l~~~~  254 (258)
                      -++-|+.|++..|+
T Consensus       360 lL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  360 LLPDLKVLDLRENP  373 (1255)
T ss_pred             hcCCcceeeccCCc
Confidence            99999999998876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=2e-24  Score=164.99  Aligned_cols=251  Identities=18%  Similarity=0.171  Sum_probs=194.3

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccc-ccccccCCcccCCCCCccEEE
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN-NNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ....+.|..|+++ .+|.++|+.+++|++|||++|.|+.+.+.+|.+++.+..|.+++ |+|+......|..+..++.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4567889999999 99999999999999999999999999999999999999988887 888877777888899999999


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccc------ee-------ecCCCCCc---
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSL------SG-------SMVSLSNL---  146 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~-------~~~~~~~~---  146 (258)
                      +.-+.+.-...+.+..++++..|.+..|.+.......+..+..++.+.+..|..      .+       .+..++..   
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            988888866667888899999999999888733333666666777766665541      00       00000000   


Q ss_pred             -------------------CCCcEE----EeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEee
Q 035481          147 -------------------SSVEHI----YLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR  203 (258)
Q Consensus       147 -------------------~~L~~l----~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  203 (258)
                                         ..++.+    .-..+....-+...|..+++|+.|++++|.++.+-+.+|.+...+++|.+.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                               001111    111111121234567888999999999999998888899999999999999


Q ss_pred             CCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhccccc
Q 035481          204 GNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLL  255 (258)
Q Consensus       204 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  255 (258)
                      .|++...-...|.++++|+.|+|.+|+|+...|-.|..+.+|.+|.+-.|++
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            9998876677888999999999999999977788899999999999988876

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.84  E-value=2.5e-24  Score=165.01  Aligned_cols=242  Identities=28%  Similarity=0.361  Sum_probs=170.1

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      +-+.+++++++++. +.|+.+ .....+..++.++|++. ..++.+...+.+..+++++|.+. ..++.++.+..+..++
T Consensus        68 ~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD  143 (565)
T ss_pred             cceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence            33445555555554 444433 23444455555555554 33444555555666666665554 3344455555666666


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      .++|.+. ..|+.+.++.++..+.+.++++....+. .-.++.|+.+|...|.+...|+.++...+|..+++..|.+.. 
T Consensus       144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-  220 (565)
T KOG0472|consen  144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-  220 (565)
T ss_pred             ccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-
Confidence            6666665 5566666777777777777777644333 333778888888888888888888888888888888888873 


Q ss_pred             CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccc
Q 035481          163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV  242 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l  242 (258)
                      .| .|.+|..|.+++++.|.+.-...+...+++++.+||+.+|++. +.|+.++-+.+|++||+++|.++ .+|..++++
T Consensus       221 lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  221 LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            33 6788888999999988885333344458899999999999998 77888898999999999999998 689899999


Q ss_pred             cchhhhhhccccc
Q 035481          243 SSWREVIDDYSLL  255 (258)
Q Consensus       243 ~~L~~l~l~~~~~  255 (258)
                       .|+.|-+.||++
T Consensus       298 -hL~~L~leGNPl  309 (565)
T KOG0472|consen  298 -HLKFLALEGNPL  309 (565)
T ss_pred             -eeeehhhcCCch
Confidence             999999999987

>PLN03210 Resistant to P

Probab=99.83  E-value=1.8e-19  Score=163.08  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=45.5

Q ss_pred             CCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEcc
Q 035481          148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLS  227 (258)
Q Consensus       148 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~  227 (258)
                      +|+.|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|.....+|..   ..+|+.|+|+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence            45555555554444445555566666666666654333333332 3444455555444222222211   1234444444


Q ss_pred             CceeecCCCcccccccchhhhhhcc
Q 035481          228 HNRLNGPIPSCLGNVSSWREVIDDY  252 (258)
Q Consensus       228 ~~~~~~~~~~~~~~l~~L~~l~l~~  252 (258)
                      +|.++ .+|.++..+++|+.|++++
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCC
Confidence            44443 3444444444444444444

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=1.4e-23  Score=160.91  Aligned_cols=244  Identities=25%  Similarity=0.306  Sum_probs=203.6

Q ss_pred             ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      ++.+.++.|.+. .+..+. .+++.+.++++.+|+.. ..++++..+.+++.++.++|++. ..|.++..+.++..++++
T Consensus        47 l~~lils~N~l~-~l~~dl-~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDL-KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchh-hccHhh-hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence            556778888876 555443 67888889999999886 56677788888888999999887 567777788889999999


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCc
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIP  164 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  164 (258)
                      .|.+. ..++.++.+..+..++..+|+++ ..|..+..+.++..+++.+|.+...++.....+.|+++++..|.+. ..|
T Consensus       123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence            98887 67778888888999998888888 6677888888898999999999887776666889999999999887 456


Q ss_pred             cchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccc
Q 035481          165 IALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS  244 (258)
Q Consensus       165 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~  244 (258)
                      ..+..+.+|+.|++..|++. ..| .|.+|..|+++++..|.+.........+++++..||+++|+++ ..|+.+..+++
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs  276 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS  276 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence            77888999999999999985 666 7899999999999999987433344458999999999999998 68999999999


Q ss_pred             hhhhhhcccccCCC
Q 035481          245 WREVIDDYSLLSGF  258 (258)
Q Consensus       245 L~~l~l~~~~~~~~  258 (258)
                      |.+|++++|.|++.
T Consensus       277 L~rLDlSNN~is~L  290 (565)
T KOG0472|consen  277 LERLDLSNNDISSL  290 (565)
T ss_pred             hhhhcccCCccccC
Confidence            99999999999873

>PLN03210 Resistant to P

Probab=99.80  E-value=1.9e-18  Score=156.61  Aligned_cols=126  Identities=17%  Similarity=0.160  Sum_probs=92.5

Q ss_pred             CCccEEEcccccc-eeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEe
Q 035481          124 VCLEFIDISENSL-SGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL  202 (258)
Q Consensus       124 ~~L~~L~l~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  202 (258)
                      ++|+.|++++|.. ...+..+..+++|+.|++.+|.....+|..+ .+++|+.|++++|......|.   ..++|+.|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeEC
Confidence            4566677766643 3456667788899999999885433444444 678899999999865444443   2467899999


Q ss_pred             eCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccc
Q 035481          203 RGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL  254 (258)
Q Consensus       203 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~  254 (258)
                      ++|.+. .+|..+..+++|+.|++++|.--..+|..+..+++|+.+++.+|.
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999887 677888889999999999876444677777788888888888774

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=5.6e-19  Score=150.66  Aligned_cols=220  Identities=27%  Similarity=0.289  Sum_probs=138.4

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCccc-----------
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGL-----------   72 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------   72 (258)
                      +|+.|++.+|+++ .+|.    ..++|++|++++|+++.+. .   ..++|+.|++.+|.+.. .+..+           
T Consensus       223 ~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls~N~L~~-Lp~lp~~L~~L~Ls~N  292 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTH-LPALPSGLCKLWIFGN  292 (788)
T ss_pred             CCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCccc-C---cccccceeeccCCchhh-hhhchhhcCEEECcCC
Confidence            5777888888887 5664    2577888888888776432 1   12455666666655442 11111           


Q ss_pred             ------CCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCc
Q 035481           73 ------LSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNL  146 (258)
Q Consensus        73 ------~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  146 (258)
                            ..+++|+.|++++|.+.. +|..   ...|+.|.+.+|.+. .+|.   ...+|+.|++++|.+..++..   .
T Consensus       293 ~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~LP~l---p  361 (788)
T PRK15387        293 QLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLASLPTL---P  361 (788)
T ss_pred             ccccccccccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc---cccccceEecCCCccCCCCCC---C
Confidence                  012344555555544441 2221   123444444444444 2221   123677777777777665532   2


Q ss_pred             CCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEc
Q 035481          147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL  226 (258)
Q Consensus       147 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l  226 (258)
                      .+++.|++.+|.+..+ +.   .+.+|+.|++++|.++ .+|..   .++|+.|++++|.+.+ +|..   +.+|+.|++
T Consensus       362 ~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~L  429 (788)
T PRK15387        362 SELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSV  429 (788)
T ss_pred             cccceehhhccccccC-cc---cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhh
Confidence            4567777777777643 22   2357888999999886 34432   3678999999998874 5543   346888999


Q ss_pred             cCceeecCCCcccccccchhhhhhcccccCC
Q 035481          227 SHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ++|.++ .+|..+..+++|+.|++++|+++|
T Consensus       430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             ccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            999998 789999999999999999999986

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=1.3e-18  Score=149.07  Aligned_cols=226  Identities=23%  Similarity=0.351  Sum_probs=103.3

Q ss_pred             ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      .+.|++++.+++ .+|..+   .++++.|++++|.++.+ +..+.  ++|++|++++|.++. .+..+  ..+|+.|+++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence            345555555555 455433   23455555555555432 22221  345555555555442 22221  1345555555


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCC-------------------C
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS-------------------N  145 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------------~  145 (258)
                      +|.+. .+|..+.  .+|+.|++.+|.+. .+|..+.  ++|+.|++++|.+..++..+.                   -
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l  323 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL  323 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc
Confidence            55544 3333221  34555555555544 2333221  345555555554443332211                   1


Q ss_pred             cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481          146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD  225 (258)
Q Consensus       146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~  225 (258)
                      .++|+.|++++|.++.. +..+  +++|+.|++++|.+. .+|..+  .++|+.|++++|.+. .+|..+.  ..|+.|+
T Consensus       324 ~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld  394 (754)
T PRK15370        324 PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQ  394 (754)
T ss_pred             cccceeccccCCccccC-Chhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence            13455555555555432 2222  145555666655554 233322  245566666666555 2333332  2455566


Q ss_pred             ccCceeecCCCccc----ccccchhhhhhcccccC
Q 035481          226 LSHNRLNGPIPSCL----GNVSSWREVIDDYSLLS  256 (258)
Q Consensus       226 l~~~~~~~~~~~~~----~~l~~L~~l~l~~~~~~  256 (258)
                      +++|.+. .+|..+    ..++.+..|++.+|+++
T Consensus       395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            6666655 344322    22355556666666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=2.5e-21  Score=153.35  Aligned_cols=253  Identities=21%  Similarity=0.202  Sum_probs=129.8

Q ss_pred             CcceEEecCcCcccccc---CcccccCCCCccEEECCCCcccc------ccCccccCCcccceeecccccccccCCcccC
Q 035481            3 KELITLDLSRNNFSGEL---SRPIFSGCPSLETLDLSNNNFYG------QLFPNYMNLTHLRSLLLDNNNFSGKMTDGLL   73 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   73 (258)
                      ++|+.++++++.+++..   ....+...++++.++++++.+..      ..+..+..+++|+.|+++++.+....+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            34666666666653210   11223445566666666665431      1122344456677777766665432233332


Q ss_pred             CCC---CccEEEccCccccC----CCCCcCCCC-CccceEEecCccccCC----cCccccCCCCccEEEccccccee---
Q 035481           74 SST---LLEVLNVSNNKLSG----DIPHWIGNF-SGLWVLLMSENYLQGS----IPVQLGNLVCLEFIDISENSLSG---  138 (258)
Q Consensus        74 ~l~---~L~~l~l~~~~~~~----~~~~~l~~l-~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~---  138 (258)
                      .+.   +|++++++++.+..    .....+..+ ++|+.+++.+|.+++.    ....+..++.|+.|++++|.+.+   
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            232   36677776665541    111223344 6667777766665522    12234445566777776666542   


Q ss_pred             --ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCCCChhhc-----cCCCccEEEeeCCee
Q 035481          139 --SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGRIPHQIN-----ELSNLHFLLLRGNYL  207 (258)
Q Consensus       139 --~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l  207 (258)
                        ....+...++|+++++++|.+++.    ....+..+++|++|++++|.+.......+.     ..+.|+.|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence              112233445677777776665432    223344556677777777665432121111     135677777777666


Q ss_pred             cc----cCCccccCCCcccEEEccCceeecC----CCcccccc-cchhhhhhccccc
Q 035481          208 QG----RIPNQLCQLRKLGIMDLSHNRLNGP----IPSCLGNV-SSWREVIDDYSLL  255 (258)
Q Consensus       208 ~~----~~~~~l~~~~~L~~l~l~~~~~~~~----~~~~~~~l-~~L~~l~l~~~~~  255 (258)
                      ++    .....+..+++|+++++++|.++..    +...+... +.|+++++.+|++
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            42    1223344456677777777766532    23333334 5666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=4.6e-19  Score=151.74  Aligned_cols=206  Identities=23%  Similarity=0.334  Sum_probs=132.9

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++|+.|++++|+++ .+|...+   ++|+.|++++|.+..+ +..+.  +.|+.|++++|.+. ..|..+  ..+|+.|+
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~N~L~-~LP~~l--~s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATLP--DTIQEMELSINRIT-ELPERL--PSALQSLD  268 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhhh--ccccEEECcCCccC-cCChhH--hCCCCEEE
Confidence            35778888888887 6776553   4677777777776533 22222  35666666666655 223322  23456666


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccC--------------------CcCccccCCCCccEEEcccccceeecCC
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQG--------------------SIPVQLGNLVCLEFIDISENSLSGSMVS  142 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~  142 (258)
                      +++|.+. .+|..+.  ++|+.|++.+|.++.                    .+|..+  .++|+.|++++|.+..++..
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~  343 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPAS  343 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCccccCChh
Confidence            6655555 3333321  345555555554442                    122221  25788888888888776654


Q ss_pred             CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCcccc----CC
Q 035481          143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC----QL  218 (258)
Q Consensus       143 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~----~~  218 (258)
                      +.  ++|+.|++++|.++.. +..+  .+.|+.|++++|.++ .+|..+.  +.|+.|++++|++. .+|..+.    .+
T Consensus       344 l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~  414 (754)
T PRK15370        344 LP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG  414 (754)
T ss_pred             hc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence            43  7899999999998743 4433  368999999999987 4555443  36999999999987 4555443    45


Q ss_pred             CcccEEEccCceee
Q 035481          219 RKLGIMDLSHNRLN  232 (258)
Q Consensus       219 ~~L~~l~l~~~~~~  232 (258)
                      +.+..+++.+|.+.
T Consensus       415 ~~l~~L~L~~Npls  428 (754)
T PRK15370        415 PQPTRIIVEYNPFS  428 (754)
T ss_pred             CCccEEEeeCCCcc
Confidence            78899999999886

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.78  E-value=1.9e-21  Score=148.84  Aligned_cols=245  Identities=19%  Similarity=0.188  Sum_probs=188.2

Q ss_pred             EecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccC-c
Q 035481            8 LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSN-N   86 (258)
Q Consensus         8 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~-~   86 (258)
                      .+-++-+++ ++|.+.   .+....++|..|+|+.+.+.+|..+++|++|++++|.|+.+.+.+|..++++..+.+.+ |
T Consensus        51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            455666677 788776   56788999999999999999999999999999999999999999999999888887665 8


Q ss_pred             cccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEeeccccc-----
Q 035481           87 KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAIN-----  160 (258)
Q Consensus        87 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~-----  160 (258)
                      +++......|..+..++-|.+.-+++.-...+.+..++++..|.+..|.+..+.. .+.....++++.+..|.+.     
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            8987777788999999999998888775556678889999999999998877655 5667777777777666521     


Q ss_pred             -------ccCccchhcCCCceEEEccC-------------------------CcccCCCC-hhhccCCCccEEEeeCCee
Q 035481          161 -------GLIPIALLRSSTLLTLDLRD-------------------------NKLFGRIP-HQINELSNLHFLLLRGNYL  207 (258)
Q Consensus       161 -------~~~~~~~~~~~~L~~L~l~~-------------------------~~~~~~~~-~~~~~~~~L~~L~l~~~~l  207 (258)
                             ...+..+++..-..-..+.+                         +....+.| ..|..+++|++|++++|++
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                   01111111111111111111                         11111222 3467889999999999999


Q ss_pred             cccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481          208 QGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       208 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +++-+.+|+....+++|-|.+|++...-..+|.++..|+.|++.+|+||
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            9888899999999999999999998555567999999999999999996

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=7.1e-21  Score=150.80  Aligned_cols=251  Identities=23%  Similarity=0.241  Sum_probs=180.3

Q ss_pred             EEecCcCccccccCcccccCCCCccEEECCCCccccc----cCccccCCcccceeecccccccc------cCCcccCCCC
Q 035481            7 TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQ----LFPNYMNLTHLRSLLLDNNNFSG------KMTDGLLSST   76 (258)
Q Consensus         7 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~   76 (258)
                      .|+|+.+.+++.--...|..+++|+.++++++.++..    .+..+...+.+++++++++.+..      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4678888776444445567788899999999988533    23344567789999999887652      1223456678


Q ss_pred             CccEEEccCccccCCCCCcCCCC---CccceEEecCccccCC----cCccccCC-CCccEEEccccccee-----ecCCC
Q 035481           77 LLEVLNVSNNKLSGDIPHWIGNF---SGLWVLLMSENYLQGS----IPVQLGNL-VCLEFIDISENSLSG-----SMVSL  143 (258)
Q Consensus        77 ~L~~l~l~~~~~~~~~~~~l~~l---~~L~~l~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~-----~~~~~  143 (258)
                      +|+.++++++.+....+..+..+   ++|+.+++.++.+.+.    ....+..+ ++|+.+++++|.+..     ....+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            99999999988864444444444   4499999999887632    22344556 899999999998873     23345


Q ss_pred             CCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccCCccc
Q 035481          144 SNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRIPNQL  215 (258)
Q Consensus       144 ~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l  215 (258)
                      ..++.|+++++++|.+++.    ....+...++|+.|++++|.+...    ....+..+++|++|++++|.+.+.....+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            5667899999999988742    233445567999999999987533    23455678999999999998875333222


Q ss_pred             c-----CCCcccEEEccCceee----cCCCcccccccchhhhhhcccccCC
Q 035481          216 C-----QLRKLGIMDLSHNRLN----GPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       216 ~-----~~~~L~~l~l~~~~~~----~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      .     ..+.|++|++++|.++    ..+...+..+++|+.+++++|.++.
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            2     2379999999999986    2334556777899999999999863

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.75  E-value=1.4e-20  Score=157.66  Aligned_cols=241  Identities=25%  Similarity=0.323  Sum_probs=142.9

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++++.|+.++|.++ .....  ....+|++++++++.+.... ..+..+.+|+.+...+|.+. ..+..+....+|+.+.
T Consensus       219 ~~l~~L~a~~n~l~-~~~~~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~  293 (1081)
T KOG0618|consen  219 PSLTALYADHNPLT-TLDVH--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS  293 (1081)
T ss_pred             cchheeeeccCcce-eeccc--cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence            45666666666655 22221  12456777777777665433 55566677777777777664 3444455556666666


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccc-c-------------------------CCCCccEEEcccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL-G-------------------------NLVCLEFIDISENSL  136 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~-~-------------------------~~~~L~~L~l~~~~~  136 (258)
                      +..|++. -+|........|++|++..|.+. ..|..+ .                         ..+.|+.|.+.+|.+
T Consensus       294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            6666665 45555556666666666666554 222211 0                         112344444445555


Q ss_pred             ee-ecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccc
Q 035481          137 SG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQL  215 (258)
Q Consensus       137 ~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l  215 (258)
                      .+ ..+.+....+|+.|++++|.+..++...+.++..|++|+|++|+++ .+|..+..++.|++|...+|++. ..| .+
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~  448 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL  448 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence            43 2334446667777777777776666666666777777777777765 55566666677777777777665 445 55


Q ss_pred             cCCCcccEEEccCceeec-CCCcccccccchhhhhhcccc
Q 035481          216 CQLRKLGIMDLSHNRLNG-PIPSCLGNVSSWREVIDDYSL  254 (258)
Q Consensus       216 ~~~~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~  254 (258)
                      ..++.|+.+|++.|.++. .++..+.. ++|++|++++|.
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            667777777777777652 22333333 677777777775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.73  E-value=2.9e-20  Score=155.84  Aligned_cols=244  Identities=26%  Similarity=0.316  Sum_probs=179.0

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      ++++|+.+....+++. .+.    -.-++++.|+.++|.+......  ..-.+|++++++++.++ ..+.++..+.+|+.
T Consensus       197 ~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~  268 (1081)
T KOG0618|consen  197 NLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEA  268 (1081)
T ss_pred             hccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceE
Confidence            3567777777777765 332    2357899999999988732221  23357999999999998 45588999999999


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCC----------------
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS----------------  144 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------  144 (258)
                      +..+.|.+. ..|..+....+|+.+.+..|.+. .+|........|++|++..|.+...++.+.                
T Consensus       269 l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~  346 (1081)
T KOG0618|consen  269 LNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK  346 (1081)
T ss_pred             ecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence            999999996 77888888999999999999998 556667778999999999998876544221                


Q ss_pred             ----------CcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCcc
Q 035481          145 ----------NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQ  214 (258)
Q Consensus       145 ----------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  214 (258)
                                ..+.|+.|++.+|.+++..-..+.+.++|+.|+|++|.+.......+.+++.|+.|+++||+++ .+|+.
T Consensus       347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence                      1234455666667666655566667777777777777776555556667777777777777776 45566


Q ss_pred             ccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          215 LCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       215 l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ...|+.|+.|-..+|.+. ..| .+..+++|+.++++.|.++.
T Consensus       426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            677777777777777776 566 56777777777777777653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.72  E-value=1.4e-16  Score=136.12  Aligned_cols=218  Identities=24%  Similarity=0.262  Sum_probs=136.8

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      +-..|+++++.++ .+|..+.   ++|+.|++.+|.++.+. .   ..++|++|++++|+++.. +.   ..++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            3467999999998 8888663   58999999999987532 2   247899999999998843 33   2467888888


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCC-----------------Cc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS-----------------NL  146 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~  146 (258)
                      ..|.+. .++..   ..+|+.|++.+|.++ .+|.   .+++|+.|++++|.+..++....                 -.
T Consensus       270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp  341 (788)
T PRK15387        270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLP  341 (788)
T ss_pred             cCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCCcccccccccccCccccccccc
Confidence            887766 33322   245666666666665 3332   23556666666666654432111                 01


Q ss_pred             CCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEc
Q 035481          147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL  226 (258)
Q Consensus       147 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l  226 (258)
                      .+|+.|++++|.++..+ .   ..++|..|++++|.+. .+|..   .++|+.|++++|++.+ +|..   .++|+.|++
T Consensus       342 ~~Lq~LdLS~N~Ls~LP-~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL  409 (788)
T PRK15387        342 SGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV  409 (788)
T ss_pred             cccceEecCCCccCCCC-C---CCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence            24555555555554321 1   1234555555555554 23321   2467888888888773 4432   357888888


Q ss_pred             cCceeecCCCcccccccchhhhhhcccccCC
Q 035481          227 SHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ++|.++ .+|..   ...|+.|++++|.|+.
T Consensus       410 S~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~  436 (788)
T PRK15387        410 SGNRLT-SLPML---PSGLLSLSVYRNQLTR  436 (788)
T ss_pred             cCCcCC-CCCcc---hhhhhhhhhccCcccc
Confidence            888887 46753   3467888898888864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=1.5e-19  Score=123.81  Aligned_cols=163  Identities=29%  Similarity=0.446  Sum_probs=84.2

Q ss_pred             CCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEE
Q 035481           50 NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFI  129 (258)
Q Consensus        50 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L  129 (258)
                      .+..++.|.+++|+++ ..+..++.+.+|+.+++.+|++. ..|..++.+++|+.+++..|.+                 
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-----------------   91 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-----------------   91 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-----------------
Confidence            3344455555555554 33344444555555555555544 4444444555555555544444                 


Q ss_pred             EcccccceeecCCCCCcCCCcEEEeecccccc-cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          130 DISENSLSGSMVSLSNLSSVEHIYLHNNAING-LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       130 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                             ...+.+++.++.|+.+++.+|.+.. ..++.|..+..|+.|.+++|.+. .+|..+..+++|+.|.+.+|.+.
T Consensus        92 -------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen   92 -------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             -------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence                   4444444444444444444444432 24455555555555556665553 55555555666666666666555


Q ss_pred             ccCCccccCCCcccEEEccCceeecCCCccccc
Q 035481          209 GRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN  241 (258)
Q Consensus       209 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~  241 (258)
                       ..|..++.+..|++|.+.+|+++ .+|..++.
T Consensus       164 -~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence             44555555555666666666665 45544443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.3e-19  Score=122.16  Aligned_cols=158  Identities=26%  Similarity=0.372  Sum_probs=140.9

Q ss_pred             cCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCce
Q 035481           95 WIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLL  174 (258)
Q Consensus        95 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~  174 (258)
                      .+..+.++..+.+++|+++ .+|..++.+.+|+.|+++.|++.+.+..+++++.|+.++++-|.+. ..+..|...|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            3446777888888999988 5666788889999999999999999999999999999999988876 5788999999999


Q ss_pred             EEEccCCccc-CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhccc
Q 035481          175 TLDLRDNKLF-GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYS  253 (258)
Q Consensus       175 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~  253 (258)
                      .||+++|++. ...|+.|..++.|+.|.+++|.+. .+|...+++.+|+.|.+.+|.+. .+|..++.+++|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            9999999985 468888889999999999999987 88889999999999999999987 68999999999999999999


Q ss_pred             ccC
Q 035481          254 LLS  256 (258)
Q Consensus       254 ~~~  256 (258)
                      +++
T Consensus       184 rl~  186 (264)
T KOG0617|consen  184 RLT  186 (264)
T ss_pred             eee
Confidence            985

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.56  E-value=2.2e-16  Score=119.57  Aligned_cols=231  Identities=19%  Similarity=0.221  Sum_probs=168.3

Q ss_pred             cCCCCccEEECCCCcccccc----CccccCCcccceeecccccc---ccc-------CCcccCCCCCccEEEccCccccC
Q 035481           25 SGCPSLETLDLSNNNFYGQL----FPNYMNLTHLRSLLLDNNNF---SGK-------MTDGLLSSTLLEVLNVSNNKLSG   90 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~---~~~-------~~~~~~~l~~L~~l~l~~~~~~~   90 (258)
                      ..+..++.+++++|.+....    ...+.+.+.|+..+++.--.   ...       ..+++..+++|+++++++|-+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            44667888999998875322    23345667888887775321   111       12345556789999999998874


Q ss_pred             CCCC----cCCCCCccceEEecCccccCCc-------------CccccCCCCccEEEcccccceee-----cCCCCCcCC
Q 035481           91 DIPH----WIGNFSGLWVLLMSENYLQGSI-------------PVQLGNLVCLEFIDISENSLSGS-----MVSLSNLSS  148 (258)
Q Consensus        91 ~~~~----~l~~l~~L~~l~l~~~~~~~~~-------------~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~  148 (258)
                      ..+.    .+.++..|++|.+.+|.+....             ....++.+.|+.+...+|.+...     ...+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            4333    3456889999999998775222             22345568899999999988542     335667799


Q ss_pred             CcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccCCcccc----
Q 035481          149 VEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRIPNQLC----  216 (258)
Q Consensus       149 L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~----  216 (258)
                      |+.+.+..|.+...    ....+..+++|+.||+.+|.++..    ....+..++.|+.|.+++|.+......++.    
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~  266 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK  266 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence            99999999987532    456778999999999999998643    334566788999999999998765544443    


Q ss_pred             -CCCcccEEEccCceee----cCCCcccccccchhhhhhccccc
Q 035481          217 -QLRKLGIMDLSHNRLN----GPIPSCLGNVSSWREVIDDYSLL  255 (258)
Q Consensus       217 -~~~~L~~l~l~~~~~~----~~~~~~~~~l~~L~~l~l~~~~~  255 (258)
                       ..|+|+.+++.+|.++    ..+..++...+.|..|++++|.+
T Consensus       267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             4689999999999997    23445677899999999999998

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.36  E-value=4.6e-14  Score=107.11  Aligned_cols=230  Identities=25%  Similarity=0.254  Sum_probs=165.8

Q ss_pred             CCcceEEecCcCccccc---cCcccccCCCCccEEECCCCccc---c-------ccCccccCCcccceeecccccccccC
Q 035481            2 MKELITLDLSRNNFSGE---LSRPIFSGCPSLETLDLSNNNFY---G-------QLFPNYMNLTHLRSLLLDNNNFSGKM   68 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~~~~   68 (258)
                      +..++.+++++|.+...   .-...+.+-++|+..++++-.-.   .       ....++..+|+|++++|+.|.+....
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            45688899999976422   12234566789999999864211   1       12234567889999999999876443


Q ss_pred             Ccc----cCCCCCccEEEccCccccCC-------------CCCcCCCCCccceEEecCccccCCc----CccccCCCCcc
Q 035481           69 TDG----LLSSTLLEVLNVSNNKLSGD-------------IPHWIGNFSGLWVLLMSENYLQGSI----PVQLGNLVCLE  127 (258)
Q Consensus        69 ~~~----~~~l~~L~~l~l~~~~~~~~-------------~~~~l~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~  127 (258)
                      ...    +..+..|+.|.+.+|.+...             ......+-+.|+.+.+.+|.+....    ...+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            333    45578899999999988622             1223345678999999998875222    23456678999


Q ss_pred             EEEccccccee-----ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCCCChhh-----cc
Q 035481          128 FIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGRIPHQI-----NE  193 (258)
Q Consensus       128 ~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~  193 (258)
                      .+.+..|.+..     ....+.++++|+.|++.+|.++..    +...++.+++|+++++++|.+......++     ..
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            99999998864     223566899999999999988643    56777888999999999999865554443     24


Q ss_pred             CCCccEEEeeCCeecccC----CccccCCCcccEEEccCcee
Q 035481          194 LSNLHFLLLRGNYLQGRI----PNQLCQLRKLGIMDLSHNRL  231 (258)
Q Consensus       194 ~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~l~l~~~~~  231 (258)
                      .|+|++|.+.+|.++...    .......+.|..|+|++|++
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            689999999999887422    22334568999999999998

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.36  E-value=9.4e-15  Score=117.48  Aligned_cols=173  Identities=27%  Similarity=0.415  Sum_probs=150.0

Q ss_pred             CccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeec
Q 035481           77 LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHN  156 (258)
Q Consensus        77 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~  156 (258)
                      -....+++.|.+. .+|..+..+..|+.+.++.|.+. .+|..++.+..|.+++++.|+++..+..++.++ |+.+-+++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            3445677778777 77888888899999999999988 778889999999999999999999888888765 89999999


Q ss_pred             ccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCC
Q 035481          157 NAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP  236 (258)
Q Consensus       157 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~  236 (258)
                      |.++ ..++.+...+.|..||.+.|.+. ..|..+..+.+|+.|.+..|++. .+|..++.+ .|..||++.|++. .+|
T Consensus       153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP  227 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP  227 (722)
T ss_pred             Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence            9988 45667778899999999999985 77788889999999999999988 567777754 5899999999998 899


Q ss_pred             cccccccchhhhhhcccccCC
Q 035481          237 SCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       237 ~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      -+|++|+.|+.|-|++|++.+
T Consensus       228 v~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhhheeeeeccCCCCC
Confidence            999999999999999999864

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.35  E-value=2.8e-13  Score=101.43  Aligned_cols=129  Identities=24%  Similarity=0.232  Sum_probs=107.1

Q ss_pred             CCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEe
Q 035481          123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL  202 (258)
Q Consensus       123 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  202 (258)
                      ...|+.+|++.|.++.+-+.+.-.|.++.++++.|.+...  ..+..+++|+.||+++|.++ ...++-..+-++++|.+
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            4578899999999988888888889999999999998754  33777899999999999986 44455567789999999


Q ss_pred             eCCeecccCCccccCCCcccEEEccCceeecCCC--cccccccchhhhhhcccccCC
Q 035481          203 RGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP--SCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       203 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ++|.+.+.  ..+..+-+|..||+++|+|. .+.  ..++++|.|+.+.+.+|++.+
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccc
Confidence            99988633  46778889999999999997 344  468999999999999999976

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=8e-14  Score=108.77  Aligned_cols=206  Identities=22%  Similarity=0.197  Sum_probs=136.4

Q ss_pred             CCcccceeecccccccccCC-cccCCCCCccEEEccCccccC--CCCCcCCCCCccceEEecCccccCCcCc-cccCCCC
Q 035481           50 NLTHLRSLLLDNNNFSGKMT-DGLLSSTLLEVLNVSNNKLSG--DIPHWIGNFSGLWVLLMSENYLQGSIPV-QLGNLVC  125 (258)
Q Consensus        50 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~--~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~  125 (258)
                      ++.+|+.+.++++.+..... .....+++++.|+++.|-+..  ........+|+|+.|+++.|.+.-.... .-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            46678888888776652221 345567888888888876551  2334456788888888888876522211 1224567


Q ss_pred             ccEEEccccccee--ecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCC-ChhhccCCCccEEEe
Q 035481          126 LEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRI-PHQINELSNLHFLLL  202 (258)
Q Consensus       126 L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l  202 (258)
                      |+.|.++.|.++.  +......+|+++.|++..|............+..|++|||++|.+.... ......+|.|..|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            8888888888763  3334457888888888888422222333345578888999988875332 234567788888888


Q ss_pred             eCCeecccC-Ccc-----ccCCCcccEEEccCceeecCCC--cccccccchhhhhhcccccC
Q 035481          203 RGNYLQGRI-PNQ-----LCQLRKLGIMDLSHNRLNGPIP--SCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       203 ~~~~l~~~~-~~~-----l~~~~~L~~l~l~~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +.|.+.+.. |+.     ...+++|+.|++..|.+. .++  ..+..+++|+.+.++.|+++
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            888776422 222     346788999999998885 333  34667888888888888774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.31  E-value=1.4e-12  Score=92.46  Aligned_cols=125  Identities=26%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             CCCccceEEecCccccCCcCcccc-CCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEE
Q 035481           98 NFSGLWVLLMSENYLQGSIPVQLG-NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL  176 (258)
Q Consensus        98 ~l~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L  176 (258)
                      +..++++|++.++.+...  +.+. .+.+|+.|+++.|.+..+. .+..++.|++|++++|.++.........+++|++|
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            344556666666655422  1232 3455566666666555432 34445555555555555553322111234555555


Q ss_pred             EccCCcccCC-CChhhccCCCccEEEeeCCeecccC---CccccCCCcccEEE
Q 035481          177 DLRDNKLFGR-IPHQINELSNLHFLLLRGNYLQGRI---PNQLCQLRKLGIMD  225 (258)
Q Consensus       177 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~---~~~l~~~~~L~~l~  225 (258)
                      ++++|.+.+. .-..+..+|+|+.|++.+|.+.+..   ...+..+|+|+.||
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            5555555321 1133444555555555555554321   11233445555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=8.8e-12  Score=101.72  Aligned_cols=173  Identities=35%  Similarity=0.461  Sum_probs=78.5

Q ss_pred             CCccEEEccCccccCCCCCcCCCCC-ccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEe
Q 035481           76 TLLEVLNVSNNKLSGDIPHWIGNFS-GLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYL  154 (258)
Q Consensus        76 ~~L~~l~l~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l  154 (258)
                      ..++.+++.++.++ .++....... +|+.+++..+.+. ..+..+..+++|+.|+++.|.+.+.+......+.++.+++
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            34455555555444 3333333332 5555555555544 3233344455555555555555544444334455555555


Q ss_pred             ecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecC
Q 035481          155 HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP  234 (258)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~  234 (258)
                      ++|.+.... .....+..|+++.+++|... ..+..+...+++..+.+.+|++. ..+..+..++.++.+++++|.++ .
T Consensus       194 s~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~  269 (394)
T COG4886         194 SGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-S  269 (394)
T ss_pred             cCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-c
Confidence            555554321 11122233555555555321 22333444444555554444443 22334444445555555555554 2


Q ss_pred             CCcccccccchhhhhhccccc
Q 035481          235 IPSCLGNVSSWREVIDDYSLL  255 (258)
Q Consensus       235 ~~~~~~~l~~L~~l~l~~~~~  255 (258)
                      ++. ++...+++.|+++++.+
T Consensus       270 i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         270 ISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ccc-ccccCccCEEeccCccc
Confidence            333 44555555555555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.21  E-value=1.6e-11  Score=100.14  Aligned_cols=174  Identities=35%  Similarity=0.446  Sum_probs=93.0

Q ss_pred             CCccEEECCCCccccccCccccCC-cccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEE
Q 035481           28 PSLETLDLSNNNFYGQLFPNYMNL-THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL  106 (258)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~  106 (258)
                      +.++.+++.++.++.+. +..... ++|+.|++++|++.. .+..+..++.|+.|+++.|.+. ..+......+.|+.+.
T Consensus       116 ~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCc-cccccchhhcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            45666666666655322 222223 256666666666552 2233455666666666666665 3333333556666666


Q ss_pred             ecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCC
Q 035481          107 MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR  186 (258)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  186 (258)
                      +.++.+. .++........|+.+.+++|.....+..+.....+..+.+..|.+... +..+..+++++.|++++|.++..
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccc
Confidence            6666665 334333334446666666665444444555555555555555554421 34445555666666666666433


Q ss_pred             CChhhccCCCccEEEeeCCeec
Q 035481          187 IPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       187 ~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      ..  +....+++.|+++++.+.
T Consensus       271 ~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         271 SS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cc--ccccCccCEEeccCcccc
Confidence            22  555566666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.21  E-value=1.6e-11  Score=72.13  Aligned_cols=61  Identities=48%  Similarity=0.611  Sum_probs=52.2

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccc
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF   64 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   64 (258)
                      |+|++|++++|+++ .++...|.++++|++|++++|.+..+.+..|.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            67888899988888 78888888889999999998888877778888888888888888764

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=6.2e-13  Score=107.24  Aligned_cols=168  Identities=30%  Similarity=0.450  Sum_probs=77.1

Q ss_pred             EECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccc
Q 035481           33 LDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL  112 (258)
Q Consensus        33 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  112 (258)
                      .+++.|.+. ..+..+..+-.|+.+.+++|.+. ..+..++.+..|++++++.|++. ..|..++.++ |+.+.+.+|++
T Consensus        80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl  155 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL  155 (722)
T ss_pred             hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence            444444443 22333333444444455554444 33444444455555555555444 3344443333 45555555554


Q ss_pred             cCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhc
Q 035481          113 QGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN  192 (258)
Q Consensus       113 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  192 (258)
                      + ..|..++....|..+|.+.|.+...+..+..+.+|+.+.+..|.+...+. .+. .-.|..||++.|++. .+|..|.
T Consensus       156 ~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~-El~-~LpLi~lDfScNkis-~iPv~fr  231 (722)
T KOG0532|consen  156 T-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE-ELC-SLPLIRLDFSCNKIS-YLPVDFR  231 (722)
T ss_pred             c-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH-HHh-CCceeeeecccCcee-ecchhhh
Confidence            4 34444444444555555555554444444444455555555554443222 122 223444555555543 4444455


Q ss_pred             cCCCccEEEeeCCeec
Q 035481          193 ELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       193 ~~~~L~~L~l~~~~l~  208 (258)
                      +++.|++|-|.+|.++
T Consensus       232 ~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhheeeeeccCCCC
Confidence            5555555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=1.7e-11  Score=87.07  Aligned_cols=106  Identities=29%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             CCccEEEcccccceeecCCCC-CcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEe
Q 035481          124 VCLEFIDISENSLSGSMVSLS-NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL  202 (258)
Q Consensus       124 ~~L~~L~l~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  202 (258)
                      .+++.|++.++.+..+- .+. .+.+++.|++++|.++..  +.+..++.|++|++++|.++.........+|+|++|++
T Consensus        19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            34455555555554332 222 344555555555555433  23444555555555555554222111123455555555


Q ss_pred             eCCeecccC-CccccCCCcccEEEccCceee
Q 035481          203 RGNYLQGRI-PNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       203 ~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++|++.+.. ...+..+++|+.|++.+|++.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            555554311 133444555555555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.3e-12  Score=102.22  Aligned_cols=206  Identities=22%  Similarity=0.250  Sum_probs=93.0

Q ss_pred             CCcceEEecCcCccccccCc-ccccCCCCccEEECCCCcccccc--CccccCCcccceeecccccccccCCc-ccCCCCC
Q 035481            2 MKELITLDLSRNNFSGELSR-PIFSGCPSLETLDLSNNNFYGQL--FPNYMNLTHLRSLLLDNNNFSGKMTD-GLLSSTL   77 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~   77 (258)
                      +.+|+.+.+.++.+. ..+. .....+++++.|++++|=+....  ......+|+|+.|+++.|.+..-... .-..+++
T Consensus       120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            345566666666554 2221 33455666666666665332111  11123456666666666654311111 1113455


Q ss_pred             ccEEEccCccccCC-CCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec--CCCCCcCCCcEEEe
Q 035481           78 LEVLNVSNNKLSGD-IPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM--VSLSNLSSVEHIYL  154 (258)
Q Consensus        78 L~~l~l~~~~~~~~-~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l  154 (258)
                      ++.|.++.|.++.. ....+..+|+|+.|.+..|...........-+..|+.||+++|.+-...  .....++.|+.+++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            66666666555411 1122334566666666555321111122223445566666666554433  23445555666666


Q ss_pred             ecccccccC-ccc-----hhcCCCceEEEccCCcccCC-CChhhccCCCccEEEeeCCeec
Q 035481          155 HNNAINGLI-PIA-----LLRSSTLLTLDLRDNKLFGR-IPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       155 ~~~~~~~~~-~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      +.+++.+.. +++     ....+.|+.|++..|.+.+. ....+..+++|+.|.+..|.+.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            655554331 111     12334555555555554211 1122333444555554444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.16  E-value=1.9e-11  Score=71.81  Aligned_cols=59  Identities=29%  Similarity=0.327  Sum_probs=29.4

Q ss_pred             CccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccc
Q 035481          196 NLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL  254 (258)
Q Consensus       196 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~  254 (258)
                      +|++|++++|++....+..|..+++|++|++++|.++...+..|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555544444455555555555555555543333445555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.14  E-value=4.5e-11  Score=104.83  Aligned_cols=108  Identities=31%  Similarity=0.354  Sum_probs=76.1

Q ss_pred             CCcceEEecCcCc--cccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCcc
Q 035481            2 MKELITLDLSRNN--FSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLE   79 (258)
Q Consensus         2 ~~~L~~L~l~~~~--l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   79 (258)
                      +|+|++|-+.++.  +. .++..+|..+|.|+.||+++|.-....|..++++-+||+|++++..+. ..|..+..+..|.
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            5667777777765  44 677777778888888888876544566777777788888888887776 5667777777788


Q ss_pred             EEEccCccccCCCCCcCCCCCccceEEecCcc
Q 035481           80 VLNVSNNKLSGDIPHWIGNFSGLWVLLMSENY  111 (258)
Q Consensus        80 ~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~  111 (258)
                      +|++..+......+.....+++|++|.+....
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccc
Confidence            88777665443445555557778887775543

>PLN03150 hypothetical protein; Provisional

Probab=99.10  E-value=9.6e-11  Score=100.31  Aligned_cols=106  Identities=28%  Similarity=0.470  Sum_probs=84.5

Q ss_pred             CcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccC
Q 035481          149 VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH  228 (258)
Q Consensus       149 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~  228 (258)
                      ++.|++++|.+.+..+..+..+++|+.|++++|.+...+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66778888888777777888888888888888888777888888888888888888888888888888888888888888


Q ss_pred             ceeecCCCcccccc-cchhhhhhcccc
Q 035481          229 NRLNGPIPSCLGNV-SSWREVIDDYSL  254 (258)
Q Consensus       229 ~~~~~~~~~~~~~l-~~L~~l~l~~~~  254 (258)
                      |.+++.+|..+... .++..+++.+|+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            88888888776653 345566666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=4.8e-11  Score=89.63  Aligned_cols=129  Identities=22%  Similarity=0.200  Sum_probs=99.6

Q ss_pred             CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481           99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL  178 (258)
Q Consensus        99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  178 (258)
                      ...|+++++++|.++ .+.++..-.|.++.|+++.|.+..+.. +..+++|+++++++|.++... +.--.+-++.+|.+
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL  359 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence            356888899998887 566777778999999999999876543 778889999999999887542 22234568889999


Q ss_pred             cCCcccCCCChhhccCCCccEEEeeCCeecccC-CccccCCCcccEEEccCceee
Q 035481          179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++|.+.  ....+..+=+|..||+++|++.... ...++++|.|+++.|.+|.+.
T Consensus       360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            999873  2344566667889999999887432 467889999999999999987

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.00  E-value=1.7e-10  Score=101.34  Aligned_cols=128  Identities=24%  Similarity=0.283  Sum_probs=98.5

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCc--cccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNN--FYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      ..+.+.+-++.+. .++..  ..++.|++|-+..+.  +.......|..+|.|+.|++++|.--...|..++.+.+|++|
T Consensus       524 ~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            3456666666554 44433  346689999999885  554555568889999999999876555778888999999999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENS  135 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  135 (258)
                      ++.++.+. .+|..+.++..|.+|++..+......+.....+++|++|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999888 888999999999999998877554556666678999999887654

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=4.8e-10  Score=96.06  Aligned_cols=86  Identities=37%  Similarity=0.561  Sum_probs=81.6

Q ss_pred             CceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhc
Q 035481          172 TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDD  251 (258)
Q Consensus       172 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~  251 (258)
                      .++.|+|+++.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 035481          252 YSLLSG  257 (258)
Q Consensus       252 ~~~~~~  257 (258)
                      +|.++|
T Consensus       499 ~N~l~g  504 (623)
T PLN03150        499 GNSLSG  504 (623)
T ss_pred             CCcccc
Confidence            999986

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.92  E-value=2.1e-10  Score=84.95  Aligned_cols=230  Identities=19%  Similarity=0.183  Sum_probs=157.5

Q ss_pred             CCCccEEECCCCccccccCccc----cCCcccceeecccccccc----------cCCcccCCCCCccEEEccCccccCCC
Q 035481           27 CPSLETLDLSNNNFYGQLFPNY----MNLTHLRSLLLDNNNFSG----------KMTDGLLSSTLLEVLNVSNNKLSGDI   92 (258)
Q Consensus        27 ~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~----------~~~~~~~~l~~L~~l~l~~~~~~~~~   92 (258)
                      +..+..+++++|.|.......+    .+-..|+..+++.-....          ...+++..+++|+.+++++|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            6678888999988764433333    344667777766432111          12245677899999999999887555


Q ss_pred             CC----cCCCCCccceEEecCccccCCcCc-------------cccCCCCccEEEcccccceeecC-----CCCCcCCCc
Q 035481           93 PH----WIGNFSGLWVLLMSENYLQGSIPV-------------QLGNLVCLEFIDISENSLSGSMV-----SLSNLSSVE  150 (258)
Q Consensus        93 ~~----~l~~l~~L~~l~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~  150 (258)
                      ++    .+.+.+.|.+|.+++|.+......             ..+.-|.|+.+++.+|.+...+.     .+.....|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            54    345678899999998876422211             22345789999999998754332     233447899


Q ss_pred             EEEeeccccccc-----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccCCcccc-----
Q 035481          151 HIYLHNNAINGL-----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRIPNQLC-----  216 (258)
Q Consensus       151 ~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-----  216 (258)
                      .+.+..|.|...     ....+..+.+|+.||+++|.++..    ...++...+.|+.|.+.+|-++.....++.     
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            999999988643     223456789999999999998643    334556678899999999988754433221     


Q ss_pred             -CCCcccEEEccCceeecCCCcc-------cccccchhhhhhcccccC
Q 035481          217 -QLRKLGIMDLSHNRLNGPIPSC-------LGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       217 -~~~~L~~l~l~~~~~~~~~~~~-------~~~l~~L~~l~l~~~~~~  256 (258)
                       ..|+|..|-..+|.+.+.+...       =.++|-|..+.+.+|.|.
T Consensus       269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence             3478888888888876433211       136888899999999875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=1.6e-10  Score=94.77  Aligned_cols=126  Identities=28%  Similarity=0.304  Sum_probs=61.3

Q ss_pred             cccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEc
Q 035481           52 THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDI  131 (258)
Q Consensus        52 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  131 (258)
                      ..++.+.++.+.+.. ....+..+.+++.+++.+|.+. .+...+..+++|+++++.+|.++..  ..+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            344444445444432 1222444555666666665554 2222244556666666666655422  22334444566666


Q ss_pred             ccccceeecCCCCCcCCCcEEEeecccccccCc-cchhcCCCceEEEccCCcc
Q 035481          132 SENSLSGSMVSLSNLSSVEHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKL  183 (258)
Q Consensus       132 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~  183 (258)
                      .+|.+.... .+..+..++.+++++|.+..... . ...+..++.+.+.+|.+
T Consensus       148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             ccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            666554432 22234555556666665554322 1 34445555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.85  E-value=3.6e-11  Score=100.00  Aligned_cols=179  Identities=25%  Similarity=0.157  Sum_probs=118.2

Q ss_pred             CcccCCCCCccEEEccCccccCCCCCcCCCC-CccceEEecCcc--cc-------CCcCccccCCCCccEEEccccccee
Q 035481           69 TDGLLSSTLLEVLNVSNNKLSGDIPHWIGNF-SGLWVLLMSENY--LQ-------GSIPVQLGNLVCLEFIDISENSLSG  138 (258)
Q Consensus        69 ~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l-~~L~~l~l~~~~--~~-------~~~~~~~~~~~~L~~L~l~~~~~~~  138 (258)
                      |-.+..+.+|+.|.+.++++..  ...+..+ ..|++|.+.+.-  +.       |.+...+. .-.|.+.++++|.+..
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLVL  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHHh
Confidence            3345566788888888887763  1222222 346666554321  11       11111111 1246666777777765


Q ss_pred             ecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCC
Q 035481          139 SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL  218 (258)
Q Consensus       139 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  218 (258)
                      +-..+.-++.++.|+++.|.+++.  ..+..++.|.+|||++|.+..+..-...++. |+.|.+++|.+++.  ..++++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence            555666678888999999988754  3778889999999999988644333344444 89999999988743  456788


Q ss_pred             CcccEEEccCceeecCC-Ccccccccchhhhhhccccc
Q 035481          219 RKLGIMDLSHNRLNGPI-PSCLGNVSSWREVIDDYSLL  255 (258)
Q Consensus       219 ~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~  255 (258)
                      .+|..||+++|-+.+-- ..-++.+.+|+.|.+.||++
T Consensus       254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            89999999999876311 23477888999999999987

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4e-11  Score=89.82  Aligned_cols=192  Identities=18%  Similarity=0.150  Sum_probs=112.8

Q ss_pred             CccEEECCCCccccc-cCccccCCcccceeecccccccccCCcccCCCCCccEEEccCcc-ccC-CCCCcCCCCCccceE
Q 035481           29 SLETLDLSNNNFYGQ-LFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK-LSG-DIPHWIGNFSGLWVL  105 (258)
Q Consensus        29 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~-~~~~~l~~l~~L~~l  105 (258)
                      .|+.+|++...++.. ....++.|.+|+.|.+.+.++.+.....++.-..|+.++++.+. ++. .....+.+|..|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477777777666421 12234556777777777777665555555666777777777643 331 122345677888888


Q ss_pred             EecCccccCCcCc-cccC-CCCccEEEcccccce----eecCCCCCcCCCcEEEeecccc-cccCccchhcCCCceEEEc
Q 035481          106 LMSENYLQGSIPV-QLGN-LVCLEFIDISENSLS----GSMVSLSNLSSVEHIYLHNNAI-NGLIPIALLRSSTLLTLDL  178 (258)
Q Consensus       106 ~l~~~~~~~~~~~-~~~~-~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l  178 (258)
                      ++.+|........ .+.+ -++|..|+++++.-.    +..--...++++.+|++++|.. +......+...+.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            8887765433211 1111 145677777766432    1111234778888888888753 3323344556788888888


Q ss_pred             cCCcccCCCChh---hccCCCccEEEeeCCeecccCCccccCCCccc
Q 035481          179 RDNKLFGRIPHQ---INELSNLHFLLLRGNYLQGRIPNQLCQLRKLG  222 (258)
Q Consensus       179 ~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  222 (258)
                      +.|-.  .+|..   +...|.|.+|++.||--.+...-..+.+++|+
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence            88753  45543   35668899999988743322222333455554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=8.1e-10  Score=90.56  Aligned_cols=218  Identities=28%  Similarity=0.275  Sum_probs=90.1

Q ss_pred             CCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceE
Q 035481           26 GCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVL  105 (258)
Q Consensus        26 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l  105 (258)
                      .++++..+++.+|.+..+. ..+..+++|++|++++|.|+..  ..+..++.|+.|++.+|.+...  ..+..++.|+.+
T Consensus        93 ~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l  167 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL  167 (414)
T ss_pred             cccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence            3455555555555553221 1134455555555555555422  2233444455555555554311  223334555555


Q ss_pred             EecCccccCCcCcc-ccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCC--CceEEEccCCc
Q 035481          106 LMSENYLQGSIPVQ-LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSS--TLLTLDLRDNK  182 (258)
Q Consensus       106 ~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~  182 (258)
                      .+.++.+....+ . ...+.+++.+.+..|.+.... .+.....+..+++..|.++...+  +....  .|+.++++++.
T Consensus       168 ~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  168 DLSYNRIVDIEN-DELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR  243 (414)
T ss_pred             cCCcchhhhhhh-hhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence            555555442211 1 233444454555544443211 11111222222444444432211  11111  25555555555


Q ss_pred             ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec--CCC--cccccccchhhhhhccccc
Q 035481          183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG--PIP--SCLGNVSSWREVIDDYSLL  255 (258)
Q Consensus       183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--~~~--~~~~~l~~L~~l~l~~~~~  255 (258)
                      +. ..+..+...+.+..|++.++++...  ..+...+.+..+....+.+..  ...  ......+.++.+.+.++++
T Consensus       244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (414)
T KOG0531|consen  244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI  317 (414)
T ss_pred             cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence            53 2213344445555555555554421  122233344444444444331  011  1133445555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.6e-11  Score=90.82  Aligned_cols=153  Identities=19%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             ccEEEccCccccC-CCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccc-ceeec--CCCCCcCCCcEEE
Q 035481           78 LEVLNVSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENS-LSGSM--VSLSNLSSVEHIY  153 (258)
Q Consensus        78 L~~l~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~~L~~l~  153 (258)
                      ++++|+++..++. ..-..+..|.+|+.+.+.+..+...+...++.-.+|+.++++.+. ++...  .-+.+|+.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            4455555443331 111223345555555555555544444444445555555554432 22211  1123455555555


Q ss_pred             eecccccccCccc-h-hcCCCceEEEccCCccc---CCCChhhccCCCccEEEeeCC-eecccCCccccCCCcccEEEcc
Q 035481          154 LHNNAINGLIPIA-L-LRSSTLLTLDLRDNKLF---GRIPHQINELSNLHFLLLRGN-YLQGRIPNQLCQLRKLGIMDLS  227 (258)
Q Consensus       154 l~~~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~l~l~  227 (258)
                      +++|..+.....+ + .-.++++.|+++|+.-.   ..+..-...+|+|..||+++| .++......|-+++-|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            5555443211110 0 11234455555554321   111122234555555555555 2222222333444555555555


Q ss_pred             Cce
Q 035481          228 HNR  230 (258)
Q Consensus       228 ~~~  230 (258)
                      +|.
T Consensus       347 RCY  349 (419)
T KOG2120|consen  347 RCY  349 (419)
T ss_pred             hhc
Confidence            554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=1.4e-09  Score=90.77  Aligned_cols=158  Identities=23%  Similarity=0.179  Sum_probs=108.4

Q ss_pred             CCcCCCCCccceEEecCccccCCcCccccC-CCCccEEEccccc--cee----ecCCCC---CcCCCcEEEeeccccccc
Q 035481           93 PHWIGNFSGLWVLLMSENYLQGSIPVQLGN-LVCLEFIDISENS--LSG----SMVSLS---NLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        93 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~--~~~----~~~~~~---~~~~L~~l~l~~~~~~~~  162 (258)
                      |-.+..+.+|+.|.+.++.+...  ..+.. -.+|+.|...+..  +.+    ....+.   .+..|...++++|.+. .
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            44566678888888888776421  11111 1234444322211  111    111121   2346677888888887 4


Q ss_pred             CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccc
Q 035481          163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV  242 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l  242 (258)
                      +...+.-++.++.|+|+.|++++..  .+..+++|++||+++|.+....--....|. |..|.+++|.++.  .-.+.++
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhHHhh
Confidence            5677788899999999999997443  788999999999999999844333444555 9999999999983  3458899


Q ss_pred             cchhhhhhcccccCCC
Q 035481          243 SSWREVIDDYSLLSGF  258 (258)
Q Consensus       243 ~~L~~l~l~~~~~~~~  258 (258)
                      ++|+.|++++|-|.++
T Consensus       254 ksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             hhhhccchhHhhhhcc
Confidence            9999999999998764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.49  E-value=1.8e-08  Score=74.93  Aligned_cols=230  Identities=23%  Similarity=0.198  Sum_probs=155.4

Q ss_pred             CCcceEEecCcCccccccC---cccccCCCCccEEECCCCccc----------cccCccccCCcccceeecccccccccC
Q 035481            2 MKELITLDLSRNNFSGELS---RPIFSGCPSLETLDLSNNNFY----------GQLFPNYMNLTHLRSLLLDNNNFSGKM   68 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~~~~   68 (258)
                      +..++.+++|+|.+..+..   ...+.+-++|+..+++.-...          .....++..||+|++.+++.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4568889999998753222   223455678888888764221          122345678999999999999876443


Q ss_pred             Cc----ccCCCCCccEEEccCccccCCCCC-------------cCCCCCccceEEecCccccCCcCc-----cccCCCCc
Q 035481           69 TD----GLLSSTLLEVLNVSNNKLSGDIPH-------------WIGNFSGLWVLLMSENYLQGSIPV-----QLGNLVCL  126 (258)
Q Consensus        69 ~~----~~~~l~~L~~l~l~~~~~~~~~~~-------------~l~~l~~L~~l~l~~~~~~~~~~~-----~~~~~~~L  126 (258)
                      +.    .++....|.+|.+++|.+....-.             ...+-|.|+.+.+..|.+. ..+.     .+..=..|
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l  187 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL  187 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence            33    355668899999999988632222             2234578999999998875 2222     12222478


Q ss_pred             cEEEcccccceee------cCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCCCChhh-----
Q 035481          127 EFIDISENSLSGS------MVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGRIPHQI-----  191 (258)
Q Consensus       127 ~~L~l~~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----  191 (258)
                      +.+.+.+|.+...      ......+.+|+.|++..|.++..    ....++.++.|+.|.+.+|.+......++     
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            9999999998642      22345778999999999988643    45666778889999999998865444332     


Q ss_pred             -ccCCCccEEEeeCCeecc-cCCc----cc--cCCCcccEEEccCceee
Q 035481          192 -NELSNLHFLLLRGNYLQG-RIPN----QL--CQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       192 -~~~~~L~~L~l~~~~l~~-~~~~----~l--~~~~~L~~l~l~~~~~~  232 (258)
                       ...|+|..|...+|...+ .+..    .+  ...|-|..+.+.||++.
T Consensus       268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence             135889999988885532 2111    11  24677888888888886

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=1e-08  Score=77.17  Aligned_cols=181  Identities=19%  Similarity=0.157  Sum_probs=86.7

Q ss_pred             CCccEEEccCcccc--CCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee--ecCCCCCcCCCcE
Q 035481           76 TLLEVLNVSNNKLS--GDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEH  151 (258)
Q Consensus        76 ~~L~~l~l~~~~~~--~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~  151 (258)
                      ..++.+++++|.+.  +.+...+.++|.|+.|+++.|.+...+...-.-..+|+.+.+.+..+..  ........|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            44555555555554  1222234455666666666555542222111123455555555554432  1122234455555


Q ss_pred             EEeecccccccC--ccchh-cCCCceEEEccCCcccC--CCChhhccCCCccEEEeeCCeecccC-CccccCCCcccEEE
Q 035481          152 IYLHNNAINGLI--PIALL-RSSTLLTLDLRDNKLFG--RIPHQINELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMD  225 (258)
Q Consensus       152 l~l~~~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~  225 (258)
                      ++++.|.+....  ..... ..+.+.+++...|....  .....-...|++..+.+..|.+.+.. ....+.+|.+.-|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            555555332210  11111 12345555555554311  01111133466777777777654322 33455556666677


Q ss_pred             ccCceeec-CCCcccccccchhhhhhcccccC
Q 035481          226 LSHNRLNG-PIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       226 l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      |+.+.+.+ +-.+.+.++++|..|.+.++++.
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            77776652 11234666777777777777663

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.44  E-value=2.8e-07  Score=65.65  Aligned_cols=102  Identities=25%  Similarity=0.173  Sum_probs=57.0

Q ss_pred             CCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccC-CccccCCCcccEEEc
Q 035481          148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMDL  226 (258)
Q Consensus       148 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l  226 (258)
                      ....+++.+|.+..  ...+++++.|.+|.+.+|+++.+.|..-.-.|+|+.|.+.+|.+.+.. .+.+..||+|+.|.+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            33455566655542  244556666666666666666554444444566666666666655322 234556666666666


Q ss_pred             cCceeecCC---Ccccccccchhhhhhc
Q 035481          227 SHNRLNGPI---PSCLGNVSSWREVIDD  251 (258)
Q Consensus       227 ~~~~~~~~~---~~~~~~l~~L~~l~l~  251 (258)
                      -+|.++..-   ...+.++|+|+.|++.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehh
Confidence            666665211   1345566666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.43  E-value=8.9e-09  Score=68.62  Aligned_cols=89  Identities=25%  Similarity=0.304  Sum_probs=51.2

Q ss_pred             cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481          146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD  225 (258)
Q Consensus       146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~  225 (258)
                      ...|..+++++|.+.++.+......+.++.+++++|.+. .+|..+..+|.|+.|.++.|.+. ..|+.+..+.++-.|+
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            344555566666665444444444456666666666664 55555666666666666666665 4455555555566666


Q ss_pred             ccCceeecCCCc
Q 035481          226 LSHNRLNGPIPS  237 (258)
Q Consensus       226 l~~~~~~~~~~~  237 (258)
                      .-+|... .+|.
T Consensus       130 s~~na~~-eid~  140 (177)
T KOG4579|consen  130 SPENARA-EIDV  140 (177)
T ss_pred             CCCCccc-cCcH
Confidence            6666554 4443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=6e-08  Score=73.12  Aligned_cols=183  Identities=17%  Similarity=0.085  Sum_probs=86.0

Q ss_pred             CCCccEEECCCCcccccc--CccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccC-CCCCcCCCCCccc
Q 035481           27 CPSLETLDLSNNNFYGQL--FPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSG-DIPHWIGNFSGLW  103 (258)
Q Consensus        27 ~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~l~~l~~L~  103 (258)
                      +..++.+|+.+|.++...  ..-+.++|.|++|++++|++...+........+|+++.+.+..+.. .....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            455666666666654321  1223456666666666666542211111244566666666554431 1222334455555


Q ss_pred             eEEecCccccCCc--CccccC-CCCccEEEccccccee---ecCCCCCcCCCcEEEeeccccccc-CccchhcCCCceEE
Q 035481          104 VLLMSENYLQGSI--PVQLGN-LVCLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAINGL-IPIALLRSSTLLTL  176 (258)
Q Consensus       104 ~l~l~~~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L  176 (258)
                      .+.++.|.+....  ...... -+.++++.+..|....   .......++++..+-+..|.+.+. ....+-..+.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            5555554322110  001111 1233333333333211   111122346666666666655432 12222333444566


Q ss_pred             EccCCcccC-CCChhhccCCCccEEEeeCCeecc
Q 035481          177 DLRDNKLFG-RIPHQINELSNLHFLLLRGNYLQG  209 (258)
Q Consensus       177 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~  209 (258)
                      +|+.+.+.+ ..-.++.++|.|..|.++.+.+.+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            677776632 222456677888888888777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.32  E-value=3e-06  Score=57.75  Aligned_cols=110  Identities=20%  Similarity=0.243  Sum_probs=55.6

Q ss_pred             cCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCC
Q 035481           19 LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGN   98 (258)
Q Consensus        19 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~   98 (258)
                      ++..+|.++.+|+.+.+.. .+..+...+|.++..++.+.+..+ +......++..+.+++.+.+.. .+.......+..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4556677777777777764 455566666777777777777664 5445555666666777777755 333233445666


Q ss_pred             CCccceEEecCccccCCcCccccCCCCccEEEccc
Q 035481           99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISE  133 (258)
Q Consensus        99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~  133 (258)
                      +++++.+.+..+ +.......+..+ .++.+.+..
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            777777777543 332334455555 677776654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=1.4e-07  Score=50.80  Aligned_cols=37  Identities=32%  Similarity=0.494  Sum_probs=28.0

Q ss_pred             CCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          195 SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       195 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++|++|++++|+++ .++..+.++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47888888888887 45556788888888888888876

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.29  E-value=3.6e-06  Score=57.37  Aligned_cols=100  Identities=18%  Similarity=0.285  Sum_probs=35.5

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      .+|+.+.+.. .+. .++...|.++++++.+.+.++ +..+...+|.+++.++.+.+.. .+.......+..+.+++.+.
T Consensus        12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            3444444443 233 444455555555555555443 3334444444554455555543 22222333344445555555


Q ss_pred             ccCccccCCCCCcCCCCCccceEEec
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMS  108 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~  108 (258)
                      +..+ +.......+.++ +++.+.+.
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEEC
Confidence            5332 221222333343 45555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.24  E-value=3.6e-06  Score=60.13  Aligned_cols=84  Identities=21%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             CCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee--cCCCCCcCCCcEEEeeccccccc---CccchhcCC
Q 035481           97 GNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS--MVSLSNLSSVEHIYLHNNAINGL---IPIALLRSS  171 (258)
Q Consensus        97 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~  171 (258)
                      ..+++|..|.+.+|.++...|..-..+++|..|.+.+|.+..+  ......|+.|++|.+-+|.++..   -.-.++..|
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence            3344444444444444433333223334444444444444332  22333444555555555544321   112333445


Q ss_pred             CceEEEccC
Q 035481          172 TLLTLDLRD  180 (258)
Q Consensus       172 ~L~~L~l~~  180 (258)
                      +|++||.++
T Consensus       141 ~l~~LDF~k  149 (233)
T KOG1644|consen  141 SLRTLDFQK  149 (233)
T ss_pred             cceEeehhh
Confidence            555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=1e-06  Score=47.42  Aligned_cols=37  Identities=32%  Similarity=0.513  Sum_probs=24.3

Q ss_pred             CCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       171 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      ++|++|++++|.++ .++..+..+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35677777777776 44545677777777777777766

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.18  E-value=5.7e-09  Score=81.76  Aligned_cols=109  Identities=15%  Similarity=0.082  Sum_probs=44.6

Q ss_pred             CcCCCcEEEeeccc-ccccCcc-chhcCCCceEEEccCCcccCC--CChhhccCCCccEEEeeCCee-cccCCcc----c
Q 035481          145 NLSSVEHIYLHNNA-INGLIPI-ALLRSSTLLTLDLRDNKLFGR--IPHQINELSNLHFLLLRGNYL-QGRIPNQ----L  215 (258)
Q Consensus       145 ~~~~L~~l~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l-~~~~~~~----l  215 (258)
                      ++.+|+.+-+..|. +++.... .-.+++.|+.+++.++.....  +...-.+++.|+.+.++.|.. ++.....    -
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~  397 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS  397 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence            34555555555553 2211111 112345555555555543211  111123455555555555532 2221111    1


Q ss_pred             cCCCcccEEEccCceee-cCCCcccccccchhhhhhccc
Q 035481          216 CQLRKLGIMDLSHNRLN-GPIPSCLGNVSSWREVIDDYS  253 (258)
Q Consensus       216 ~~~~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~~  253 (258)
                      +....++.+.+++++.+ +...+.+..+++|+.+++-+|
T Consensus       398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            22344555555555432 333344455555555544443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.15  E-value=1.4e-05  Score=64.17  Aligned_cols=56  Identities=14%  Similarity=0.120  Sum_probs=31.8

Q ss_pred             cCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCc
Q 035481           49 MNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSEN  110 (258)
Q Consensus        49 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~  110 (258)
                      ..+.+++.|++++|.++. .|.   -..+|+.|.++++.-....|..+  .++|+.|.+.+|
T Consensus        49 ~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            345677777777776652 231   23457777776643322444333  246777777665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.02  E-value=5.5e-07  Score=60.27  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=79.9

Q ss_pred             CCcEEEeecccccccCcc---chhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEE
Q 035481          148 SVEHIYLHNNAINGLIPI---ALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM  224 (258)
Q Consensus       148 ~L~~l~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l  224 (258)
                      .+..++++.|.+.. +++   .+..-.+|+.+++++|.+.+..+......|-++.|.+..|.+. ..|..+..++.|+.+
T Consensus        28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            34456667776542 222   2334467788899999986444444455678999999999998 567779999999999


Q ss_pred             EccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          225 DLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       225 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      +++.|.+. +.|..+..+.++..|+..+|.+..
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e  137 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE  137 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCcccc
Confidence            99999997 788888788888888888887643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=7.4e-07  Score=76.96  Aligned_cols=148  Identities=17%  Similarity=0.162  Sum_probs=91.0

Q ss_pred             CccceEEecCcccc-CCcCccc-cCCCCccEEEccccccee--ecCCCCCcCCCcEEEeecccccccCccchhcCCCceE
Q 035481          100 SGLWVLLMSENYLQ-GSIPVQL-GNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT  175 (258)
Q Consensus       100 ~~L~~l~l~~~~~~-~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  175 (258)
                      .+|++|++.+...- ..-+..+ .-+|.|+.|.+.+-.+..  +.....++++|..||++++.++..  .+++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46788887664321 1111112 236888888887765532  334455788888888888887754  56778888888


Q ss_pred             EEccCCcccC-CCChhhccCCCccEEEeeCCeecccC------CccccCCCcccEEEccCceeecCCCc-ccccccchhh
Q 035481          176 LDLRDNKLFG-RIPHQINELSNLHFLLLRGNYLQGRI------PNQLCQLRKLGIMDLSHNRLNGPIPS-CLGNVSSWRE  247 (258)
Q Consensus       176 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~------~~~l~~~~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~  247 (258)
                      |.+.+-.+.. .....+..+++|+.||+|........      .+.-..+|.|+.||.|++.+.+.+-+ -+...++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            8887776643 23345667888888888876543211      11222467888888888877643332 2334455554


Q ss_pred             hh
Q 035481          248 VI  249 (258)
Q Consensus       248 l~  249 (258)
                      +.
T Consensus       280 i~  281 (699)
T KOG3665|consen  280 IA  281 (699)
T ss_pred             hh
Confidence            44

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=0.00019  Score=57.94  Aligned_cols=14  Identities=7%  Similarity=0.033  Sum_probs=6.7

Q ss_pred             CcceEEecCcCccc
Q 035481            3 KELITLDLSRNNFS   16 (258)
Q Consensus         3 ~~L~~L~l~~~~l~   16 (258)
                      ++++.|++++|.++
T Consensus        52 ~~l~~L~Is~c~L~   65 (426)
T PRK15386         52 RASGRLYIKDCDIE   65 (426)
T ss_pred             cCCCEEEeCCCCCc
Confidence            34445555555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.90  E-value=2.1e-07  Score=73.19  Aligned_cols=230  Identities=17%  Similarity=0.105  Sum_probs=132.7

Q ss_pred             CCCcceEEecCcCc-cccccCcccccCCCCccEEECCCC-ccccccCccc-cCCcccceeeccccc-ccccCCcc-cCCC
Q 035481            1 EMKELITLDLSRNN-FSGELSRPIFSGCPSLETLDLSNN-NFYGQLFPNY-MNLTHLRSLLLDNNN-FSGKMTDG-LLSS   75 (258)
Q Consensus         1 ~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~-~~~l   75 (258)
                      +||++.+|.+.++. +++..-..+-..++.++.+++..| .++......+ ..+++|.+++++++. +....... ...+
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            47788888777764 443333344456788888888875 3443332322 357788888887763 22211111 1112


Q ss_pred             CCcc--------------------------EEEccCcc-ccCCC-CCcCCCCCccceEEecCccccCCcC--ccccCCCC
Q 035481           76 TLLE--------------------------VLNVSNNK-LSGDI-PHWIGNFSGLWVLLMSENYLQGSIP--VQLGNLVC  125 (258)
Q Consensus        76 ~~L~--------------------------~l~l~~~~-~~~~~-~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~  125 (258)
                      ..++                          .+++..+. ++... ...-..+..|+.+...++...+..+  ..-.++.+
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            2222                          22222221 11000 0111235566777666544321211  12246789


Q ss_pred             ccEEEcccccc-eee--cCCCCCcCCCcEEEeecccccc--cCccchhcCCCceEEEccCCccc-CC----CChhhccCC
Q 035481          126 LEFIDISENSL-SGS--MVSLSNLSSVEHIYLHNNAING--LIPIALLRSSTLLTLDLRDNKLF-GR----IPHQINELS  195 (258)
Q Consensus       126 L~~L~l~~~~~-~~~--~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~-~~----~~~~~~~~~  195 (258)
                      |+.+.+..++. ++.  ..--.+++.|+.+++..+....  .+.....+++.++.+.++.|... +.    ....-.+..
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~  401 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE  401 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence            99999988864 222  1222378899999999886432  13344567899999999988652 11    112234567


Q ss_pred             CccEEEeeCCee-cccCCccccCCCcccEEEccCce
Q 035481          196 NLHFLLLRGNYL-QGRIPNQLCQLRKLGIMDLSHNR  230 (258)
Q Consensus       196 ~L~~L~l~~~~l-~~~~~~~l~~~~~L~~l~l~~~~  230 (258)
                      .+..+.+++|.. ++.....+..|++|+++++-+|.
T Consensus       402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            899999999954 45556778889999999998886

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=1.6e-05  Score=68.93  Aligned_cols=133  Identities=26%  Similarity=0.232  Sum_probs=87.9

Q ss_pred             cceEEecCcCc-cccccCcccccCCCCccEEECCCCcccccc-CccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            4 ELITLDLSRNN-FSGELSRPIFSGCPSLETLDLSNNNFYGQL-FPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         4 ~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +|++|++++.. +....+..+..-+|.|+.|.+.+-.+.... .....++|+|..||+++..++..  ..++.+.+|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            68888888754 222344444556899999999887664222 12235678999999999888754  556778888888


Q ss_pred             EccCccccC-CCCCcCCCCCccceEEecCccccCCc------CccccCCCCccEEEccccccee
Q 035481           82 NVSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSI------PVQLGNLVCLEFIDISENSLSG  138 (258)
Q Consensus        82 ~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~  138 (258)
                      .+.+-.+.. .....+.++++|+.|+++........      -+.-..+|.|+.||.+++.+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            777655542 22235567889999999765533111      1122347899999999888754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.57  E-value=2.6e-06  Score=71.48  Aligned_cols=35  Identities=29%  Similarity=0.221  Sum_probs=16.5

Q ss_pred             ccEEEeeCCeec-ccCCccccC-CCcccEEEccCcee
Q 035481          197 LHFLLLRGNYLQ-GRIPNQLCQ-LRKLGIMDLSHNRL  231 (258)
Q Consensus       197 L~~L~l~~~~l~-~~~~~~l~~-~~~L~~l~l~~~~~  231 (258)
                      ++.|+++.|... ......... +..++.+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            466666666432 111112111 45566666666553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.46  E-value=4.4e-05  Score=56.83  Aligned_cols=83  Identities=24%  Similarity=0.324  Sum_probs=41.2

Q ss_pred             CCcEEEeecccccccCccchhcCCCceEEEccCC--cccCCCChhhccCCCccEEEeeCCeeccc-CCccccCCCcccEE
Q 035481          148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN--KLFGRIPHQINELSNLHFLLLRGNYLQGR-IPNQLCQLRKLGIM  224 (258)
Q Consensus       148 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~l  224 (258)
                      .++.+++.+..++..  ..++.+++|+.|.+++|  ++..........+|+|++|.+++|++... .-..+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            334444444444322  23445566666666666  33333333333446666666666665521 01223344556666


Q ss_pred             EccCceee
Q 035481          225 DLSHNRLN  232 (258)
Q Consensus       225 ~l~~~~~~  232 (258)
                      ++..|..+
T Consensus       122 dl~n~~~~  129 (260)
T KOG2739|consen  122 DLFNCSVT  129 (260)
T ss_pred             hcccCCcc
Confidence            66666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=3.7e-06  Score=63.15  Aligned_cols=100  Identities=22%  Similarity=0.224  Sum_probs=75.5

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCccE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEV   80 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~   80 (258)
                      +.+++.|++++++++ .+.  +..+++.|+.|.|+-|+|+..  ..+..|.+|++|+|..|.|... ....+..+++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            456788999999998 454  456899999999999999754  4578899999999999988643 2245677899999


Q ss_pred             EEccCccccCCCC-----CcCCCCCccceEE
Q 035481           81 LNVSNNKLSGDIP-----HWIGNFSGLWVLL  106 (258)
Q Consensus        81 l~l~~~~~~~~~~-----~~l~~l~~L~~l~  106 (258)
                      |.+..|.-.....     ..++.+|+|++|+
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9988876542222     2355678888885

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=6.1e-06  Score=61.99  Aligned_cols=100  Identities=24%  Similarity=0.214  Sum_probs=53.5

Q ss_pred             CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccccc-CccchhcCCCceEEE
Q 035481           99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL-IPIALLRSSTLLTLD  177 (258)
Q Consensus        99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~  177 (258)
                      +.+.++|+++++.+..+  .....++.|+.|.++-|+++.. ..+..|++|++|++..|.|.++ ....+.++|+|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            34455666666655422  2334556666666666665433 2455566666666666666543 223455666666666


Q ss_pred             ccCCcccCCCC-----hhhccCCCccEEE
Q 035481          178 LRDNKLFGRIP-----HQINELSNLHFLL  201 (258)
Q Consensus       178 l~~~~~~~~~~-----~~~~~~~~L~~L~  201 (258)
                      |..|.-....+     ..+..+|+|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            66665432211     2344556666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.24  E-value=0.00016  Score=53.88  Aligned_cols=84  Identities=17%  Similarity=0.145  Sum_probs=61.2

Q ss_pred             CCceEEEccCCcccCCCChhhccCCCccEEEeeCC--eecccCCccccCCCcccEEEccCceeec-CCCcccccccchhh
Q 035481          171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN--YLQGRIPNQLCQLRKLGIMDLSHNRLNG-PIPSCLGNVSSWRE  247 (258)
Q Consensus       171 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~  247 (258)
                      ..++.+++.+..++..  ..+..+|+|++|.++.|  +.....+.....+|+|+++++++|++.. .....++++++|..
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            4566666777766422  34567789999999999  6665555556678999999999999872 11134667788889


Q ss_pred             hhhcccccC
Q 035481          248 VIDDYSLLS  256 (258)
Q Consensus       248 l~l~~~~~~  256 (258)
                      |++.+|..+
T Consensus       121 Ldl~n~~~~  129 (260)
T KOG2739|consen  121 LDLFNCSVT  129 (260)
T ss_pred             hhcccCCcc
Confidence            999888765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=5.8e-05  Score=54.10  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=38.9

Q ss_pred             CCcEEEeecccccccCccchhcCCCceEEEccCCcccCC-CChhhc-cCCCccEEEeeCC-eecccCCccccCCCcccEE
Q 035481          148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR-IPHQIN-ELSNLHFLLLRGN-YLQGRIPNQLCQLRKLGIM  224 (258)
Q Consensus       148 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~l  224 (258)
                      .++.++.+++.+..+..+.+.+++.++.|.+.+|.-.+. ..+-+. ..++|+.|++++| ++++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            455566666665555555555556666665555542110 001111 2355555555555 4444444444455555555


Q ss_pred             Ecc
Q 035481          225 DLS  227 (258)
Q Consensus       225 ~l~  227 (258)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.84  E-value=3.2e-05  Score=64.99  Aligned_cols=31  Identities=16%  Similarity=-0.058  Sum_probs=15.8

Q ss_pred             hccCCCccEEEeeCCeecccC-CccccCCCcc
Q 035481          191 INELSNLHFLLLRGNYLQGRI-PNQLCQLRKL  221 (258)
Q Consensus       191 ~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L  221 (258)
                      ...+++++.+.+.++...+.. ...+..|+.|
T Consensus       358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            455667777666666533222 2334444444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.79  E-value=0.00074  Score=30.19  Aligned_cols=21  Identities=48%  Similarity=0.710  Sum_probs=12.2

Q ss_pred             cccEEEccCceeecCCCccccc
Q 035481          220 KLGIMDLSHNRLNGPIPSCLGN  241 (258)
Q Consensus       220 ~L~~l~l~~~~~~~~~~~~~~~  241 (258)
                      +|++||+++|.++ .+|+.|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 55555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.19  E-value=0.00057  Score=49.18  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=49.6

Q ss_pred             CceEEEccCCcccCCCChhhccCCCccEEEeeCCeec-ccCCcccc-CCCcccEEEccCce-eecCCCcccccccchhhh
Q 035481          172 TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ-GRIPNQLC-QLRKLGIMDLSHNR-LNGPIPSCLGNVSSWREV  248 (258)
Q Consensus       172 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~-~~~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~l  248 (258)
                      .++.+|-+++.+..+..+-+..+++++.|.+.+|.-. +.-.+.+. -.++|+.|+|++|. |++..-.++.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4566777777666555556666677777777777432 21111111 23677777777765 665556677777777777


Q ss_pred             hhcc
Q 035481          249 IDDY  252 (258)
Q Consensus       249 ~l~~  252 (258)
                      ++.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.06  E-value=0.0027  Score=28.33  Aligned_cols=18  Identities=39%  Similarity=0.536  Sum_probs=10.3

Q ss_pred             cceEEecCcCccccccCcc
Q 035481            4 ELITLDLSRNNFSGELSRP   22 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~   22 (258)
                      +|++|++++|+++ .+|..
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            3556666666665 55544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.66  E-value=0.0087  Score=27.86  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=16.6

Q ss_pred             CCcceEEecCcCccccccCccccc
Q 035481            2 MKELITLDLSRNNFSGELSRPIFS   25 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~   25 (258)
                      +++|++|++++|+++ .+|.++|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467777888888777 67776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.66  E-value=0.0087  Score=27.86  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=16.6

Q ss_pred             CCcceEEecCcCccccccCccccc
Q 035481            2 MKELITLDLSRNNFSGELSRPIFS   25 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~   25 (258)
                      +++|++|++++|+++ .+|.++|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            467777888888777 67776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.66  E-value=0.006  Score=25.25  Aligned_cols=14  Identities=50%  Similarity=0.648  Sum_probs=6.4

Q ss_pred             CcceEEecCcCccc
Q 035481            3 KELITLDLSRNNFS   16 (258)
Q Consensus         3 ~~L~~L~l~~~~l~   16 (258)
                      ++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35566666666554

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.27  E-value=2.7e-05  Score=64.65  Aligned_cols=162  Identities=22%  Similarity=0.166  Sum_probs=84.0

Q ss_pred             CCCCCccceEEecCccccCCcCc----cccCC-CCccEEEccccccee-----ecCCCCCcCCCcEEEeeccccccc---
Q 035481           96 IGNFSGLWVLLMSENYLQGSIPV----QLGNL-VCLEFIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGL---  162 (258)
Q Consensus        96 l~~l~~L~~l~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~---  162 (258)
                      +...+.|+.+++.++.+.+....    .+... ..++.|++..|.+..     ....+.....++.+++..|.+...   
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~  190 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL  190 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence            34455566666665555422111    11111 234445554454432     222333455666666666655311   


Q ss_pred             -Cccch----hcCCCceEEEccCCcccCC----CChhhccCCC-ccEEEeeCCeecccC----CccccCC-CcccEEEcc
Q 035481          163 -IPIAL----LRSSTLLTLDLRDNKLFGR----IPHQINELSN-LHFLLLRGNYLQGRI----PNQLCQL-RKLGIMDLS  227 (258)
Q Consensus       163 -~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~l~~~~----~~~l~~~-~~L~~l~l~  227 (258)
                       ....+    ....++++|.+..|.++..    ....+...+. +..|++..|.+.+..    ...+..+ +.+++++++
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~  270 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS  270 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence             11222    2356677777777766421    1123334444 556777777665432    2333334 566788888


Q ss_pred             CceeecC----CCcccccccchhhhhhcccccCC
Q 035481          228 HNRLNGP----IPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       228 ~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      +|.++..    ++..+..+++++++.+++|+++.
T Consensus       271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            8877633    23455667778888888877753

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.92  E-value=0.0024  Score=47.26  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=38.9

Q ss_pred             CcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEE
Q 035481          145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM  224 (258)
Q Consensus       145 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l  224 (258)
                      .....+.++++.|... .+...++.+..+..++++.+.+. ..|..+.....++.+++..|... ..|.++...+.++.+
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3444445555554443 12233334444455555555442 44444444444444444444443 344455555555555


Q ss_pred             EccCceee
Q 035481          225 DLSHNRLN  232 (258)
Q Consensus       225 ~l~~~~~~  232 (258)
                      ++.++++.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            55555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.42  E-value=0.016  Score=26.32  Aligned_cols=12  Identities=42%  Similarity=0.733  Sum_probs=4.0

Q ss_pred             cccEEEccCcee
Q 035481          220 KLGIMDLSHNRL  231 (258)
Q Consensus       220 ~L~~l~l~~~~~  231 (258)
                      +|++|+|++|.+
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            334444444433

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.45  E-value=0.003  Score=52.79  Aligned_cols=156  Identities=22%  Similarity=0.231  Sum_probs=100.4

Q ss_pred             cceEEecCccccCCc----CccccCCCCccEEEccccccee-----ecCCCCCc-CCCcEEEeeccccccc----Cccch
Q 035481          102 LWVLLMSENYLQGSI----PVQLGNLVCLEFIDISENSLSG-----SMVSLSNL-SSVEHIYLHNNAINGL----IPIAL  167 (258)
Q Consensus       102 L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~l~l~~~~~~~~----~~~~~  167 (258)
                      +..+.+.+|.+....    ...+...+.|+.++++.|.+.+     ....+... ..++++.+..|.++..    ....+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            667777777665332    2345667889999999988764     12223332 5667777777877644    34455


Q ss_pred             hcCCCceEEEccCCcccC----CCChhh----ccCCCccEEEeeCCeecccC----CccccCCCc-ccEEEccCceeecC
Q 035481          168 LRSSTLLTLDLRDNKLFG----RIPHQI----NELSNLHFLLLRGNYLQGRI----PNQLCQLRK-LGIMDLSHNRLNGP  234 (258)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~----~~~~~~----~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~-L~~l~l~~~~~~~~  234 (258)
                      .....++.++++.|.+..    ..+.++    ....++++|++..|.++...    ...+...+. +.++++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            557788889999888731    122222    34677889999988876322    223333344 66788888887633


Q ss_pred             ----CCcccccc-cchhhhhhcccccCC
Q 035481          235 ----IPSCLGNV-SSWREVIDDYSLLSG  257 (258)
Q Consensus       235 ----~~~~~~~l-~~L~~l~l~~~~~~~  257 (258)
                          ...++..+ ..++.+++.+|.|+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccc
Confidence                23456666 678999999998875

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.20  E-value=0.97  Score=20.96  Aligned_cols=18  Identities=28%  Similarity=0.462  Sum_probs=11.5

Q ss_pred             CcceEEecCcCccccccCc
Q 035481            3 KELITLDLSRNNFSGELSR   21 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~   21 (258)
                      ++|+.|++++|+++ .+|.
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            45667777777766 5553

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.15  E-value=1.3  Score=20.54  Aligned_cols=12  Identities=58%  Similarity=0.822  Sum_probs=5.7

Q ss_pred             CccEEECCCCcc
Q 035481           29 SLETLDLSNNNF   40 (258)
Q Consensus        29 ~L~~L~l~~~~~   40 (258)
                      +|+.|++++|.|
T Consensus         3 ~L~~L~L~~NkI   14 (26)
T smart00365        3 NLEELDLSQNKI   14 (26)
T ss_pred             ccCEEECCCCcc
Confidence            444455555444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.14  E-value=0.042  Score=40.91  Aligned_cols=91  Identities=16%  Similarity=0.054  Sum_probs=48.2

Q ss_pred             cCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCC
Q 035481           19 LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGN   98 (258)
Q Consensus        19 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~   98 (258)
                      +|..-...+.+.+.||++.+..... ...|+-+..+..|+++.+++. ..+..+.....++.++...|.+. ..|..+..
T Consensus        33 ~~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k  109 (326)
T KOG0473|consen   33 IPVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK  109 (326)
T ss_pred             cchhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence            4433344456666677766655322 233444455556666666554 34444455555555555555444 45555556


Q ss_pred             CCccceEEecCccc
Q 035481           99 FSGLWVLLMSENYL  112 (258)
Q Consensus        99 l~~L~~l~l~~~~~  112 (258)
                      .++++++....+.+
T Consensus       110 ~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEF  123 (326)
T ss_pred             cCCcchhhhccCcc
Confidence            66666666555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-22
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-22
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-06

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMN--LTHLRSLL 58
           +M+ L  LDLS N FSGEL   + +   SL TLDLS+NNF G + PN        L+ L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 59  LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
           L NN F+GK+   L + + L  L++S N LSG IP  +G+ S L  L +  N L+G IP 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 119 QLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
           +L  +  LE                        + L  N + G IP              
Sbjct: 461 ELMYVKTLE-----------------------TLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 179 XXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSC 238
             N+L G IP  I  L NL  L L  N   G IP +L   R L  +DL+ N  NG IP+ 
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 239 L 239
           +
Sbjct: 558 M 558

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/241 (35%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMN--LTHLRSLL 58
           +M+ L  LDLS N FSGEL   + +   SL TLDLS+NNF G + PN        L+ L 
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 59  LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
           L NN F+GK+   L + + L  L++S N LSG IP  +G+ S L  L +  N L+G IP 
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 119 QLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
           +L  +  LE                        + L  N + G IP              
Sbjct: 458 ELMYVKTLE-----------------------TLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 179 XXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSC 238
             N+L G IP  I  L NL  L L  N   G IP +L   R L  +DL+ N  NG IP+ 
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 239 L 239
           +
Sbjct: 555 M 555

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 30/241 (12%)
Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           ++ +L  L ++  N SG +     S   +L TLD S N   G L P+  +L +L  +  D
Sbjct: 99  KLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 61  NNNFSGKMTDGLLS-STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
            N  SG + D   S S L   + +S N+L+G IP    N + L  + +S N L+G   V 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216
Query: 120 LGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXXX 179
            G+    + I +                    + L  N +NGL                 
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLG---------KVGLSKN-LNGL--------------DLR 252
Query: 180 XNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR--LNGPIPS 237
            N+++G +P  + +L  LH L +  N L G IP Q   L++  +   ++N+     P+P+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPA 311
Query: 238 C 238
           C
Sbjct: 312 C 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N L G IP  I +L+ LH+L +    + G IP+ L Q++ L  +D S+N L+G +P  + 
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 241 NVSSWREVIDDYSLLSG 257
           ++ +   +  D + +SG
Sbjct: 147 SLPNLVGITFDGNRISG 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  190 bits (486), Expect = 4e-56
 Identities = 87/248 (35%), Positives = 131/248 (52%), Gaps = 5/248 (2%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +K L  L L+ N F+GE+   +   C +L  LDLS N+FYG + P + + + L SL L +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 62  NNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSG-LWVLLMSENYLQGSIPVQ 119
           NNFSG++    L     L+VL++S N+ SG++P  + N S  L  L +S N   G I   
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 120 LGN--LVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
           L       L+ + +  N  +G +  +LSN S +  ++L  N ++G IP +L   S L  L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
            L  N L G IP ++  +  L  L+L  N L G IP+ L     L  + LS+NRL G IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507

Query: 237 SCLGNVSS 244
             +G + +
Sbjct: 508 KWIGRLEN 515

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  183 bits (466), Expect = 2e-53
 Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 24/266 (9%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             EL++L LS N  SG +          L  L L  N   G++    M +  L +L+LD 
Sbjct: 417 CSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N+ +G++  GL + T L  +++SNN+L+G+IP WIG    L +L +S N   G+IP +LG
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 122 NLVCLEFIDISENSLSGS---------------------MVSLSNLSSVEHIYLHNNAIN 160
           +   L ++D++ N  +G+                      V + N    +  +   N + 
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 161 --GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL 218
             G+    L R ST    ++      G      +   ++ FL +  N L G IP ++  +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 219 RKLGIMDLSHNRLNGPIPSCLGNVSS 244
             L I++L HN ++G IP  +G++  
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRG 681

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (463), Expect = 7e-53
 Identities = 76/254 (29%), Positives = 113/254 (44%), Gaps = 9/254 (3%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM---NLTHLRSLL 58
              L  L++S N               SLE LDLS N+  G     ++       L+ L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 59  LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
           +  N  SG +      +  LE L+VS+N  S  IP ++G+ S L  L +S N L G    
Sbjct: 185 ISGNKISGDVDVSRCVN--LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR 241

Query: 119 QLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT-LD 177
            +     L+ ++IS N   G  +    L S++++ L  N   G IP  L  +   LT LD
Sbjct: 242 AISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 178 LRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQ-LCQLRKLGIMDLSHNRLNGPIP 236
           L  N  +G +P      S L  L L  N   G +P   L ++R L ++DLS N  +G +P
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

Query: 237 SCLGNVSSWREVID 250
             L N+S+    +D
Sbjct: 361 ESLTNLSASLLTLD 374

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (458), Expect = 3e-52
 Identities = 87/281 (30%), Positives = 126/281 (44%), Gaps = 25/281 (8%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN--YMNLTHLRSLLL 59
           M+ L  LDLS N FSGEL   + +   SL TLDLS+NNF G + PN        L+ L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
            NN F+GK+   L + + L  L++S N LSG IP  +G+ S L  L +  N L+G IP +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 120 LGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178
           L  +  LE + +  N L+G +   LSN +++  I L NN + G IP  + R   L  L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL----------------- 221
            +N   G IP ++ +  +L +L L  N   G IP  + +                     
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581

Query: 222 -----GIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257
                     +     G     L  +S+         +  G
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (431), Expect = 2e-48
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            +K L TL L  N+ +GE+   + + C +L  + LSNN   G++      L +L  L L 
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN+FSG +   L     L  L+++ N  +G IP  +   S      ++ N++ G   V +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYI 578

Query: 121 GNLVCLEFIDISENSLSGSMV---SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD 177
            N    +    + N L    +    L+ LS+     + +    G        + +++ LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 178 LRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
           +  N L G IP +I  +  L  L L  N + G IP+++  LR L I+DLS N+L+G IP 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 238 CLGNVSS 244
            +  ++ 
Sbjct: 699 AMSALTM 705

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (430), Expect = 2e-48
 Identities = 70/250 (28%), Positives = 114/250 (45%), Gaps = 13/250 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLL 59
           +  L +L LS ++ +G +    F    SL +LDLS N+  G +       + + L+ L +
Sbjct: 76  LTGLESLFLSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133

Query: 60  DNNNFSGKM-TDGLLSSTLLEVLNVSNNKLSGDIPHWI---GNFSGLWVLLMSENYLQGS 115
            +N         G L    LEVL++S N +SG              L  L +S N + G 
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 116 IPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT 175
           +   +   V LEF+D+S N+ S  +  L + S+++H+ +  N ++G    A+   + L  
Sbjct: 194 VD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251

Query: 176 LDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC-QLRKLGIMDLSHNRLNGP 234
           L++  N+  G IP     L +L +L L  N   G IP+ L      L  +DLS N   G 
Sbjct: 252 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 235 IPSCLGNVSS 244
           +P   G+ S 
Sbjct: 310 VPPFFGSCSL 319

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  152 bits (386), Expect = 3e-42
 Identities = 71/245 (28%), Positives = 107/245 (43%), Gaps = 13/245 (5%)

Query: 5   LITLDLSRNNFSGELSR--PIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
           + ++DLS    +   S           LE+L LSN++  G +   +     L SL L  N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRN 110

Query: 63  NFSGKMTDG--LLSSTLLEVLNVSNNKLSGDIP-HWIGNFSGLWVLLMSENYLQGSIPVQ 119
           + SG +T    L S + L+ LNVS+N L            + L VL +S N + G+  V 
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 120 L---GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
                    L+ + IS N +SG  V +S   ++E + + +N  +  IP  L   S L  L
Sbjct: 171 WVLSDGCGELKHLAISGNKISGD-VDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHL 228

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           D+  NKL G     I+  + L  L +  N   G IP     L+ L  + L+ N+  G IP
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIP 286

Query: 237 SCLGN 241
             L  
Sbjct: 287 DFLSG 291

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  148 bits (377), Expect = 5e-41
 Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 8/239 (3%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
              L  + LS N  +GE+ + I     +L  L LSNN+F G +     +   L  L L+ 
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ--GSIPVQ 119
           N F+G +   +   +      ++ N ++G    +I N         + N L+  G    Q
Sbjct: 548 NLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 120 LGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178
           L  L      +I+     G    +  N  S+  + +  N ++G IP  +     L  L+L
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
             N + G IP ++ +L  L+ L L  N L GRIP  +  L  L  +DLS+N L+GPIP 
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  140 bits (354), Expect = 6e-38
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 14/221 (6%)

Query: 29  SLETLDLSNNNFY---GQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSN 85
            + ++DLS+         +  + ++LT L SL L N++ +G ++     S  L  L++S 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 86  NKLSGDIP--HWIGNFSGLWVLLMSENYLQGSIPVQLG-NLVCLEFIDISENSLSG---- 138
           N LSG +     +G+ SGL  L +S N L     V  G  L  LE +D+S NS+SG    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 139 SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH 198
             V       ++H+ +  N I+G + ++   +  L  LD+  N     IP  + + S L 
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVN--LEFLDVSSNNFSTGIP-FLGDCSALQ 226

Query: 199 FLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239
            L + GN L G     +    +L ++++S N+  GPIP   
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 28/141 (19%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 110 NYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIP--IAL 167
           N    ++   L +L  LE + +S + ++GS+      +S+  + L  N+++G +    +L
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL 122

Query: 168 LRSSTLLTLDLRDNKLFGRIP-HQINELSNLHFLLLRGNYLQGRIPNQLCQ---LRKLGI 223
              S L  L++  N L          +L++L  L L  N + G             +L  
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182

Query: 224 MDLSHNRLNGPIPSCLGNVSS 244
           + +S N+++G +   +    +
Sbjct: 183 LAISGNKISGDVD--VSRCVN 201

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (421), Expect = 4e-50
 Identities = 69/237 (29%), Positives = 104/237 (43%), Gaps = 6/237 (2%)

Query: 5   LITLDLSRNNFSGELSRP-IFSGCPSLETLDLSN-NNFYGQLFPNYMNLTHLRSLLLDNN 62
           +  LDLS  N       P   +  P L  L +   NN  G + P    LT L  L + + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
           N SG + D L     L  L+ S N LSG +P  I +   L  +    N + G+IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 123 LVCL-EFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
              L   + IS N L+G +  + +NL ++  + L  N + G   +          + L  
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
           N L   +  ++    NL+ L LR N + G +P  L QL+ L  +++S N L G IP 
Sbjct: 231 NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  160 bits (408), Expect = 4e-48
 Identities = 60/243 (24%), Positives = 97/243 (39%), Gaps = 8/243 (3%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLF--PNYMNLTHLRSL-LLDNNN 63
           T D     + G L     +    +  LDLS  N         +  NL +L  L +   NN
Sbjct: 30  TTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 64  FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNL 123
             G +   +   T L  L +++  +SG IP ++     L  L  S N L G++P  + +L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 124 VCLEFIDISENSLSGSM-VSLSNLSS-VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
             L  I    N +SG++  S  + S     + +  N + G IP     +  L  +DL  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLNLAFVDLSRN 207

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
            L G          N   + L  N L   +  ++   + L  +DL +NR+ G +P  L  
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 242 VSS 244
           +  
Sbjct: 267 LKF 269

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (367), Expect = 4e-42
 Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 7/219 (3%)

Query: 31  ETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMT--DGLLSSTLLEVLNVSN-NK 87
            T D  N  + G L         + +L L   N          L +   L  L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 88  LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNL 146
           L G IP  I   + L  L ++   + G+IP  L  +  L  +D S N+LSG++  S+S+L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 147 SSVEHIYLHNNAINGLIPIALLRSSTLLT-LDLRDNKLFGRIPHQINELSNLHFLLLRGN 205
            ++  I    N I+G IP +    S L T + +  N+L G+IP     L NL F+ L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 206 YLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
            L+G         +    + L+ N L   +   +G   +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (359), Expect = 7e-41
 Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           + +L  L ++  N SG +     S   +L TLD S N   G L P+  +L +L  +  D 
Sbjct: 100 LTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 62  NNFSGKMTDGLLS-STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           N  SG + D   S S L   + +S N+L+G IP    N + L  + +S N L+G   V  
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
           G+    + I +++NSL+  +  +    ++  + L NN I G +P  L +   L +L++  
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 181 NKLFGRIPHQINELSNLHFLLLRGN 205
           N L G IP Q   L          N
Sbjct: 278 NNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  102 bits (258), Expect = 3e-26
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 4/147 (2%)

Query: 108 SENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV---SLSNLSSVEHIYLHN-NAINGLI 163
                 G +         +  +D+S  +L        SL+NL  +  +Y+   N + G I
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 164 PIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGI 223
           P A+ + + L  L +    + G IP  ++++  L  L    N L G +P  +  L  L  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 224 MDLSHNRLNGPIPSCLGNVSSWREVID 250
           +    NR++G IP   G+ S     + 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMT 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (319), Expect = 2e-33
 Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 17/259 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN----YMNLTHLRSL 57
           +K L  L++  N+  G +   +F+G  +L+ L LSN+    +   N     +  + L  L
Sbjct: 328 LKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 58  LLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHW-IGNFSGLWVLLMSENYLQGSI 116
            L  N  S   +D       LEVL++  N++  ++          ++ + +S N      
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 117 PVQLGNLVCLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
                 +  L+ + +   +L     S      L ++  + L NN I  +    L     L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 174 LTLDLRDNKL--------FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD 225
             LDL+ N L         G   + +  LS+LH L L  N            L +L I+D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 226 LSHNRLNGPIPSCLGNVSS 244
           L  N LN    S   N  S
Sbjct: 567 LGLNNLNTLPASVFNNQVS 585

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (317), Expect = 4e-33
 Identities = 53/245 (21%), Positives = 93/245 (37%), Gaps = 9/245 (3%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  L+L  N  S  LS   F+ C +L  L L +N+        ++   +L +L L +
Sbjct: 72  LPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNF--SGLWVLLMSENYLQGSIPVQ 119
           N  S       +    L+ L +SNNK+       +  F  S L  L +S N ++   P  
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 120 LGNLVCLEFIDISENSLSGSMVS----LSNLSSVEHIYLHNNAINGLIPIAL--LRSSTL 173
              +  L  + ++   L  S+          +S+ ++ L N+ ++         L+ + L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 174 LTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233
             LDL  N L          L  L +  L  N +Q    + L  L  +  ++L  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 234 PIPSC 238
            I   
Sbjct: 311 SISLA 315

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (317), Expect = 4e-33
 Identities = 53/249 (21%), Positives = 85/249 (34%), Gaps = 14/249 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNY-MNLTHLRSLLLD 60
              L  L+L++N  S  +    FS    LE LDL  N    +L       L ++  + L 
Sbjct: 380 HSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSG--DIPHWIGNFSGLWVLLMSENYLQGSIPV 118
            N +     +       L+ L +    L      P        L +L +S N +      
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 119 QLGNLVCLEFIDISENSLS---------GSMVSLSNLSSVEHIYLHNNAINGLIPIALLR 169
            L  L  LE +D+  N+L+         G +  L  LS +  + L +N  + +       
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 170 SSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC-QLRKLGIMDLSH 228
              L  +DL  N L        N   +L  L L+ N +            R L  +D+  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 229 NRLNGPIPS 237
           N  +    S
Sbjct: 619 NPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (316), Expect = 6e-33
 Identities = 48/248 (19%), Positives = 87/248 (35%), Gaps = 9/248 (3%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           +  L+L+ N     L    F+    L +LD+  N            L  L+ L L +N  
Sbjct: 27  ITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
           S          T L  L++ +N +     +       L  L +S N L  +       L 
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 125 CLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
            L+ + +S N +       + +   SS++ + L +N I    P        L  L L + 
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 182 KLFGRIPHQI---NELSNLHFLLLRGNYLQGRIPNQL--CQLRKLGIMDLSHNRLNGPIP 236
           +L   +  ++      +++  L L  + L           +   L ++DLS+N LN    
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 237 SCLGNVSS 244
                +  
Sbjct: 266 DSFAWLPQ 273

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (311), Expect = 3e-32
 Identities = 52/251 (20%), Positives = 97/251 (38%), Gaps = 9/251 (3%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             +L +LD+  N  S  L   +    P L+ L+L +N         +   T+L  L L +
Sbjct: 48  YSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N+      +  +    L  L++S+N LS            L  LL+S N +Q     +L 
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 122 NLVC--LEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIAL---LRSSTLLT 175
                 L+ +++S N +   S      +  +  ++L+N  +   +   L   L ++++  
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 176 LDLRDNKLFGRIPHQINEL--SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233
           L L +++L          L  +NL  L L  N L     +    L +L    L +N +  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 234 PIPSCLGNVSS 244
                L  + +
Sbjct: 287 LFSHSLHGLFN 297

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 3e-30
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 10/244 (4%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN 63
                D S    + ++   + +   ++  L+L++N        N+   + L SL +  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 64  FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNL 123
            S    +      +L+VLN+ +N+LS          + L  L +  N +Q          
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 124 VCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIAL--LRSSTLLTLDLRD 180
             L  +D+S N LS   + +   L +++ + L NN I  L    L    +S+L  L+L  
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC---QLRKLGIMDLSHNRLNGPIPS 237
           N++    P   + +  L  L L    L   +  +LC       +  + LS+++L+    +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 238 CLGN 241
               
Sbjct: 241 TFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (281), Expect = 3e-28
 Identities = 54/253 (21%), Positives = 90/253 (35%), Gaps = 18/253 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG--QLFPNYMNLTHLRSLLL 59
            K LITLDLS N  S            +L+ L LSNN          +    + L+ L L
Sbjct: 120 QKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQGSI 116
            +N           +   L  L ++N +L   +   +        +  L +S + L  + 
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 117 PVQLGNLVC--LEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
                 L    L  +D+S N+L+     S + L  +E+ +L  N I  L   +L     +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 174 LTLDLRDN---------KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM 224
             L+L+ +          L          L  L  L +  N + G   N    L  L  +
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358

Query: 225 DLSHNRLNGPIPS 237
            LS++  +    +
Sbjct: 359 SLSNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (281), Expect = 3e-28
 Identities = 53/262 (20%), Positives = 86/262 (32%), Gaps = 20/262 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGC--PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLL 59
              +  L LS +  S   S   F G    +L  LDLS NN       ++  L  L    L
Sbjct: 221 NTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNN---------KLSGDIPHWIGNFSGLWVLLMSEN 110
           + NN     +  L     +  LN+  +          L             L  L M +N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 111 YLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNL-----SSVEHIYLHNNAINGLIPI 165
            + G        L+ L+++ +S +  S   ++         S +  + L  N I+ +   
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 166 ALLRSSTLLTLDLRDNKLFGRIPHQ-INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM 224
           A      L  LDL  N++   +  Q    L N+  + L  N       N    +  L  +
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 225 DLSHNRLNG--PIPSCLGNVSS 244
            L    L      PS    + +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 7e-20
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 4/167 (2%)

Query: 78  LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS 137
            EV + S+ KL+  +P  +   + + VL ++ N L+            L  +D+  N++S
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 138 GSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSN 196
                    L  ++ + L +N ++ L        + L  L L  N +     +   +  N
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 197 LHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS 243
           L  L L  N L         QL  L  + LS+N++       L   +
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 126 LEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFG 185
            E  D S   L+   V     +++  + L +N +  L      R S L +LD+  N +  
Sbjct: 6   HEVADCSHLKLTQ--VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 186 RIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
             P    +L  L  L L+ N L             L  + L  N +     +      +
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (300), Expect = 7e-31
 Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 10/242 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNN--NFYGQLFPNYMNLTHLRSLLL 59
           +K L  L  + N      S       PSLE LDLS N  +F G    +    T L+ L L
Sbjct: 324 LKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWI-GNFSGLWVLLMSENYLQGSIPV 118
             N     M+   L    LE L+  ++ L       +  +   L  L +S  + + +   
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 119 QLGNLVCLEFIDISENSLSGSMV--SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
               L  LE + ++ NS   + +    + L ++  + L    +  L P A    S+L  L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL-RKLGIMDLSHNRLNGPI 235
           ++  N  F         L++L  L    N++      +L      L  ++L+ N      
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 236 PS 237
             
Sbjct: 560 EH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (292), Expect = 8e-30
 Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 8/250 (3%)

Query: 1   EMKELITLDLSRNNFSGELSRPI-FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLL 59
           ++  L  LDLSRN  S +        G  SL+ LDLS N     +  N++ L  L  L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 60  DNNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI-P 117
            ++N        +  S   L  L++S+              S L VL M+ N  Q +  P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 118 VQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
                L  L F+D+S+  L   S  + ++LSS++ + + +N    L        ++L  L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 177 DLRDNKLFGRIPHQINEL-SNLHFLLLRGNYLQGRIPNQ--LCQLRKLGIMDLSHNRLNG 233
           D   N +      ++    S+L FL L  N       +Q  L  ++    + +   R+  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 583

Query: 234 PIPSCLGNVS 243
             PS    + 
Sbjct: 584 ATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (262), Expect = 1e-25
 Identities = 56/238 (23%), Positives = 85/238 (35%), Gaps = 12/238 (5%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
              LDLS N     L    F   P L+ LDLS           Y +L+HL +L+L  N  
Sbjct: 30  TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQG-SIPVQLGNL 123
                      + L+ L      L+      IG+   L  L ++ N +Q   +P    NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 124 VCLEFIDISENSLSG----SMVSLSNLSSVE-HIYLHNNAINGLIPIALLRSSTLLTLDL 178
             LE +D+S N +       +  L  +  +   + L  N +N + P A  +   L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTL 207

Query: 179 RDNKLFGRIPHQ-INELSNLHFLLLRGNYLQGRI---PNQLCQLRKLGIMDLSHNRLN 232
           R+N     +    I  L+ L    L     +            L  L  + +   RL 
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (259), Expect = 2e-25
 Identities = 47/213 (22%), Positives = 78/213 (36%), Gaps = 8/213 (3%)

Query: 28  PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK 87
            S + LDLS N        ++ +   L+ L L              S + L  L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 88  LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV--SLSN 145
           +           S L  L+  E  L       +G+L  L+ ++++ N +    +    SN
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 146 LSSVEHIYLHNNAINGLIPIALLR----SSTLLTLDLRDNKLFGRIPHQINELSNLHFLL 201
           L+++EH+ L +N I  +    L          L+LDL  N +   I     +   LH L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLT 206

Query: 202 LRGNYLQGRIPNQLCQ-LRKLGIMDLSHNRLNG 233
           LR N+    +     Q L  L +  L       
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (254), Expect = 9e-25
 Identities = 51/250 (20%), Positives = 86/250 (34%), Gaps = 16/250 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             EL  LDLSR      +    +     L TL L+ N         +  L+ L+ L+   
Sbjct: 51  FPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKL-SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N +      +     L+ LNV++N + S  +P +  N + L  L +S N +Q      L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 121 GNLVCLEF----IDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIP---IALLRSSTL 173
             L  +      +D+S N ++           +  + L NN  +  +    I  L    +
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 174 LTLDLRDNKLFGRI----PHQINELSNLHFLLLRGNYL---QGRIPNQLCQLRKLGIMDL 226
             L L + +  G +       +  L NL     R  YL      I +    L  +    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 227 SHNRLNGPIP 236
               +     
Sbjct: 290 VSVTIERVKD 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.9 bits (226), Expect = 5e-21
 Identities = 52/278 (18%), Positives = 80/278 (28%), Gaps = 45/278 (16%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD- 60
           +K L  L+++ N          FS   +LE LDLS+N        +   L  +  L L  
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 61  --NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWI---------------------- 96
             + N    +  G      L  L + NN  S ++                          
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 97  ------GNFSGLWVLLMSENYLQ------GSIPVQLGNLVCLEFIDISENSLSGSMVSLS 144
                     GL  L + E  L         I      L  +    +   ++   +   S
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFS 301

Query: 145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG 204
                +H+ L N        + L     L     +    F        +L +L FL L  
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSR 356

Query: 205 NYLQ--GRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N L   G           L  +DLS N +     + LG
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.3 bits (209), Expect = 9e-19
 Identities = 49/271 (18%), Positives = 78/271 (28%), Gaps = 39/271 (14%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLE----TLDLSNNNFYGQLFPNYMNLTHLRSL 57
           +  L  LDLS N     +          +     +LDLS N     + P       L  L
Sbjct: 148 LTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKL 205

Query: 58  LLDNNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDI---PHWIGNFSGLWVLLMSENYLQ 113
            L NN  S  +    +     LEV  +   +   +            GL  L + E  L 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 114 ------GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIAL 167
                   I      L  +    +   ++   +   S     +H+ L N        + L
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 168 LRS-------------------STLLTLDLRDNKL--FGRIPHQINELSNLHFLLLRGNY 206
                                  +L  LDL  N L   G         ++L +L L  N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 207 LQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
           +   + +    L +L  +D  H+ L      
Sbjct: 385 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 52/284 (18%), Positives = 84/284 (29%), Gaps = 49/284 (17%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLD 60
           +  L  L     N +   + P      +L+ L++++N       P Y  NLT+L  L L 
Sbjct: 99  LSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 61  NNNFSG---------------------------KMTDGLLSSTLLEVLNVSNNKLSGDIP 93
           +N                                +  G      L  L + NN  S ++ 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 94  -HWIGNFSGLWVL------LMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV----S 142
              I   +GL V         +E  L+      L  L  L   +     L   +      
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL 202
            + L++V    L +  I  +   +         L+L + K       Q   L       L
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKF-----GQFPTLKLKSLKRL 330

Query: 203 RGNYLQGRIPNQLCQLRKLGIMDLSHNRLN--GPIPSCLGNVSS 244
                +G        L  L  +DLS N L+  G         +S
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 20/98 (20%), Positives = 35/98 (35%)

Query: 147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNY 206
            S +++ L  N +  L   +      L  LDL   ++          LS+L  L+L GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 207 LQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
           +Q         L  L  +      L       +G++ +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 2e-30
 Identities = 55/240 (22%), Positives = 95/240 (39%), Gaps = 8/240 (3%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLL 58
               L  L +  N    EL         +L  LDLS+++       N    NL+HL+SL 
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 59  LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIP 117
           L  N      T+       LE+L+++  +L   D      N   L VL +S + L  S  
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 118 VQLGNLVCLEFIDISENSLSGSMV----SLSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
                L  L+ +++  N      +    SL  L  +E + L    ++ +   A      +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 174 LTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233
             +DL  N+L       ++ L  ++ L L  N++   +P+ L  L +   ++L  N L+ 
Sbjct: 503 NHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  114 bits (287), Expect = 4e-29
 Identities = 54/251 (21%), Positives = 91/251 (36%), Gaps = 10/251 (3%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
              L  LDL+  + S         G  +L+ L LS N F      +  N   L  L +  
Sbjct: 277 FSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 62  NNFSGKMTDGLLSS-TLLEVLNVSNNKL--SGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
           N    ++  G L +   L  L++S++ +  S      + N S L  L +S N        
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 119 QLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
                  LE +D++   L    +     NL  ++ + L ++ ++            L  L
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 177 DLRDNKLFGRIPHQIN---ELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233
           +L+ N        + N    L  L  L+L    L     +    L+ +  +DLSHNRL  
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 234 PIPSCLGNVSS 244
                L ++  
Sbjct: 515 SSIEALSHLKG 525

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (266), Expect = 2e-26
 Identities = 43/240 (17%), Positives = 77/240 (32%), Gaps = 10/240 (4%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSG 66
           T +      + E+   +     S E L+ S N         +  L +L  L L       
Sbjct: 16  TYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 67  KMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCL 126
              D   S   L+ L ++ N L       +     L  L   +  +     + L N   L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 127 EFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIAL--LRSSTLLTLDLRDNKL 183
           E + +  N +S   +        ++ +   NNAI+ L    +  L+ +T L+L+L  N +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQL--CQLRKLGIMDLSHNRLNGPIPSCLGN 241
              I     + +    L   G      I   L    ++ L +            P+    
Sbjct: 192 -AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  104 bits (262), Expect = 1e-25
 Identities = 46/243 (18%), Positives = 78/243 (32%), Gaps = 10/243 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
            K L  L   +   S  +         +LE+L L +N+      P       L+ L   N
Sbjct: 104 PKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

Query: 62  NNFSGKMTDGL--LSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-- 117
           N       + +  L       LN++ N ++G I     + +    L          I   
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 118 ---VQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLL 174
                + +L    F D+ +  +S ++       SVE I L  +    +        S L 
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 175 TLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP 234
            LDL    L   +P  +  LS L  L+L  N  +            L  + +  N     
Sbjct: 282 ELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 235 IPS 237
           + +
Sbjct: 341 LGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.5 bits (246), Expect = 1e-23
 Identities = 46/273 (16%), Positives = 84/273 (30%), Gaps = 32/273 (11%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  LDL+R      +    F     L+TL L+ N               L+ L    
Sbjct: 56  LINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
              S      L +   LE L + +N +S            L VL    N +       + 
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 122 NLVCLEFI--DISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIAL------------ 167
           +L     +  +++ N ++G      + +  + +         +I   L            
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 168 ----------------LRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI 211
                           L   ++ +++L+ +  F    +  +  S L  L L   +L   +
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293

Query: 212 PNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
           P+ L  L  L  + LS N+          N  S
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 9/251 (3%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLS-NNNFYGQLFPNYMNLTHLRSLLLD 60
            ++L  LD   N     LS+   S       L L+ N N    + P   +    +SL   
Sbjct: 152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 61  NNNFSGKMTDGLLSSTL--LEVLNVSNNKLSGDIPHWIGNFSGLWV--LLMSENYLQGSI 116
                  +  GL +ST+  L +    +       P        + V  + + ++Y     
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 117 PVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
                    L+ +D++   LS     L  LS+++ + L  N    L  I+     +L  L
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 177 DLRDNKLFGRI-PHQINELSNLHFLLLRGNYLQ--GRIPNQLCQLRKLGIMDLSHNRLNG 233
            ++ N     +    +  L NL  L L  + ++       QL  L  L  ++LS+N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 234 PIPSCLGNVSS 244
                      
Sbjct: 391 LKTEAFKECPQ 401

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 4/167 (2%)

Query: 79  EVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG 138
           +  N  N  L+ +IP  +   +    L  S N L          L+ L F+D++   +  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 139 SMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNL 197
               +  +   ++ + L  N +  +   AL     L  L      +       ++    L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 198 HFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
             L L  N++      +     KL ++D  +N ++      + ++  
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG---QLFPNYMNLTHLRSLL 58
           +  L  L+LS +      S  +F G P+L+ L+L  N+F     Q   +   L  L  L+
Sbjct: 424 LHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 59  LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
           L   + S        S  ++  +++S+N+L+      + +  G+  L ++ N++   +P 
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

Query: 119 QLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178
            L  L     I++ +N L     + SN+  +E    +   +             L  + L
Sbjct: 542 LLPILSQQRTINLRQNPLDC---TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRL 598

Query: 179 RDNKL 183
            D  L
Sbjct: 599 SDVTL 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  115 bits (291), Expect = 1e-29
 Identities = 37/262 (14%), Positives = 85/262 (32%), Gaps = 25/262 (9%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            + +L    +  + F  E      + C + E  +      Y      + NL  L  + + 
Sbjct: 204 RLTKLRQFYMGNSPFVAE------NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKL--------SGDIPHWIGNFSGLWVLLMSENYL 112
           N     K+   L +   ++++NV+ N+                      + ++ +  N L
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

Query: 113 Q-GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSS 171
           +   +   L  +  L  ++   N L G + +  +   +  + L  N I  +       + 
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 172 TLLTLDLRDNKLFGRIP--HQINELSNLHFLLLRGNYLQG-------RIPNQLCQLRKLG 222
            +  L    NKL   IP       +S +  +    N +          +     +   + 
Sbjct: 378 QVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 223 IMDLSHNRLNGPIPSCLGNVSS 244
            ++LS+N+++          S 
Sbjct: 437 SINLSNNQISKFPKELFSTGSP 458

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (285), Expect = 8e-29
 Identities = 45/265 (16%), Positives = 89/265 (33%), Gaps = 32/265 (12%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM---NLTHLRSLL 58
             +L +L+L+ N  +  +          +E L  ++N       PN     +++ + ++ 
Sbjct: 352 EIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAID 408

Query: 59  LDNNNFSG-------KMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENY 111
              N            +         +  +N+SNN++S          S L  + +  N 
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 112 LQG-------SIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGL 162
           L                N   L  ID+  N L+        + L  +  I L  N+ +  
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK- 527

Query: 163 IPIALLRSSTLLTLDLRD------NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC 216
            P   L SSTL    +R+      N+     P  I    +L  L +  N ++  +  ++ 
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI- 585

Query: 217 QLRKLGIMDLSHNRLNGPIPSCLGN 241
               + ++D+  N       S +  
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCP 609

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  109 bits (275), Expect = 2e-27
 Identities = 25/255 (9%), Positives = 64/255 (25%), Gaps = 21/255 (8%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQ----LFPNYMNLTHLRSLLLD 60
           +  L L     SG +          LE L L ++                          
Sbjct: 83  VTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 61  NNNFSGKMTDGL--LSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
             ++     D       + L    ++++     I            +    N +   +  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSK 200

Query: 119 QLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178
            +  L  L    +  +         +   + E+             +       L  +++
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAE----NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 179 RDNKLFGRIPHQINELSNLHFLLLRGNYL--------QGRIPNQLCQLRKLGIMDLSHNR 230
            +     ++P  +  L  +  + +  N            +         K+ I+ + +N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 231 L-NGPIPSCLGNVSS 244
           L   P+ + L  +  
Sbjct: 317 LKTFPVETSLQKMKK 331

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (266), Expect = 3e-26
 Identities = 28/250 (11%), Positives = 77/250 (30%), Gaps = 19/250 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPI---FSGCPSLETLDLSNNNFYGQLFPN--YMNLTHLRS 56
           + EL  L L  +              S   S E       ++           + + L  
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 57  LLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI 116
             ++++     +      +     +   +N ++  +   +   + L    M  +      
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 117 PVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
             +       E+    +           NL  +  + ++N      +P  L     +  +
Sbjct: 223 ICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 177 DLRDNKL--------FGRIPHQINELSNLHFLLLRGNYLQ-GRIPNQLCQLRKLGIMDLS 227
           ++  N+           +          +  + +  N L+   +   L +++KLG+++  
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 228 HNRLNGPIPS 237
           +N+L G +P+
Sbjct: 339 YNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (263), Expect = 7e-26
 Identities = 27/216 (12%), Positives = 65/216 (30%), Gaps = 11/216 (5%)

Query: 24  FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSS----TLLE 79
            +    +  L L      G++      LT L  L L ++                    E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 80  VLNVSNNKLSGDIPHWIG--NFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS 137
                          +    +FS L    ++ +  Q SI       +    I    N+++
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 138 GSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNL 197
               ++  L+ +   Y+ N+                   +    + +     + + L +L
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 198 HFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233
             + +       ++P  L  L ++ +++++ NR   
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (260), Expect = 1e-25
 Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 24/251 (9%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-------QLFPNYMNLTHL 54
            +++  L  + N      +         +  +D S N            L P      ++
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 55  RSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSG-------DIPHWIGNFSGLWVLLM 107
            S+ L NN  S    +   + + L  +N+  N L+        D      N   L  + +
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 108 SENYLQGSIP-VQLGNLVCLEFIDISENSLS------GSMVSLSNLSSVEHIYLHNNAIN 160
             N L       +   L  L  ID+S NS S       +  +L             N   
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK 220
              P  +    +L  L +  N +  ++  +I    N+  L ++ N       + +C   +
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 221 LGIMDLSHNRL 231
            G+  L +++ 
Sbjct: 613 AGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (251), Expect = 2e-24
 Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 19/255 (7%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +  +LI   ++ +     +             +   +NN    +    M LT LR   + 
Sbjct: 157 DFSDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMG 214

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           N+ F              E  N    +          N   L  + +        +P  L
Sbjct: 215 NSPFV-----AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 121 GNLVCLEFIDISENSLSG---------SMVSLSNLSSVEHIYLHNNAINGL-IPIALLRS 170
             L  ++ I+++ N             ++        ++ IY+  N +    +  +L + 
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR 230
             L  L+   N+L G++P        L  L L  N +     N      ++  +  +HN+
Sbjct: 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 231 LNG-PIPSCLGNVSS 244
           L   P      +VS 
Sbjct: 389 LKYIPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 31/240 (12%)

Query: 31  ETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSG 90
           + L+  N +  G       N    + L    + +  +    L S+  +  L++     SG
Sbjct: 40  DALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSNGRVTGLSLEGFGASG 95

Query: 91  DIPHWIGNFSGLWVLLMSENYLQG----SIPVQLGNLVCLEFIDISENSLSGSMVS---L 143
            +P  IG  + L VL +  +  +       P  +   +  E           + V     
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 144 SNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR 203
            + S +    ++++     I  +   +     +    N +   +   +  L+ L    + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214

Query: 204 GNYLQG-------------------RIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
            +                           +   L+ L  +++ +      +P+ L  +  
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (286), Expect = 6e-29
 Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 31/273 (11%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM---NLTHLRSLL 58
             +L  L L  N    E+     +    +E L  S+N       PN     ++  + S+ 
Sbjct: 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVD 650

Query: 59  LDNNNFSGKMTD-----GLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ 113
              N    +  +               + +S N++           S +  +++S N + 
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 114 -------GSIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIP 164
                          N   L  ID+  N L+        + L  + ++ +  N  +   P
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FP 769

Query: 165 IALLRSSTLLTLDLR------DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL 218
              L SS L    +R       N++  + P  I    +L  L +  N ++  +  +L   
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--T 826

Query: 219 RKLGIMDLSHNRL-NGPIPSCLGNVSSWREVID 250
            +L I+D++ N   +  + S    + +   V+ 
Sbjct: 827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (254), Expect = 9e-25
 Identities = 49/266 (18%), Positives = 83/266 (31%), Gaps = 28/266 (10%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             ++    +  NN     +         L  LD  +N    +    +     L  L LD 
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDY 604

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHW--IGNFSGLWVLLMSENYLQG----- 114
           N       D    +  +E L  S+NKL   IP+     +   +  +  S N +       
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 115 SIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGL-------IPIA 166
           S  +     +    + +S N +        +  S +  I L NN +  +           
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 167 LLRSSTLLTLDLRDNKLFGRIPHQI--NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM 224
              +  L T+DLR NKL   +        L  L  + +  N      P Q     +L   
Sbjct: 724 YKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781

Query: 225 DLSH------NRLNGPIPSCLGNVSS 244
            + H      NR+    P+ +    S
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPS 807

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  101 bits (252), Expect = 2e-24
 Identities = 32/237 (13%), Positives = 70/237 (29%), Gaps = 23/237 (9%)

Query: 24  FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83
                 L+ +  +N+ F                   D             +   L  + +
Sbjct: 444 IQRLTKLQIIYFANSPFTYDN-----IAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQG---------SIPVQLGNLVCLEFIDISEN 134
            N      +P ++ +   L  L ++ N              +         ++   +  N
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 135 SLSGSMVS--LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI- 191
           +L     S  L  +  +  +   +N +  L          L  L L  N++   IP    
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK--LTDLKLDYNQI-EEIPEDFC 615

Query: 192 NELSNLHFLLLRGNYLQGRIPN--QLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWR 246
                +  L    N L+  IPN      +  +G +D S+N++     +   ++  ++
Sbjct: 616 AFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (250), Expect = 3e-24
 Identities = 36/251 (14%), Positives = 79/251 (31%), Gaps = 24/251 (9%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQ-----LFPNYMNLTHLRS 56
             ++  L  S N      +         + ++D S N    +        +     +  +
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 57  LLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLS-------GDIPHWIGNFSGLWVLLMSE 109
           + L  N      T+   + + +  + +SNN ++               N   L  + +  
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 110 NYLQGSIP--VQLGNLVCLEFIDISENSLS------GSMVSLSNLSSVEHIYLHNNAING 161
           N L  S+    +   L  L  +D+S N  S       +   L             N I  
Sbjct: 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796

Query: 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL 221
             P  +    +L+ L +  N +  ++  ++     L+ L +  N         +C   + 
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEA 853

Query: 222 GIMDLSHNRLN 232
           G+  L +++  
Sbjct: 854 GMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 95.3 bits (237), Expect = 2e-22
 Identities = 28/220 (12%), Positives = 66/220 (30%), Gaps = 11/220 (5%)

Query: 24  FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83
                 +  L L+     G++      LT L+ L    ++ +             ++   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 84  SNNKLSGDIPHWIG------NFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS 137
             +++               N S L    ++ N     I       +    I    N ++
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 138 GSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNL 197
               ++  L+ ++ IY  N+            +      +    K +       + L +L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 198 HFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
             + L       ++P+ L  L +L  ++++ NR       
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 5e-14
 Identities = 31/239 (12%), Positives = 75/239 (31%), Gaps = 26/239 (10%)

Query: 31  ETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSG 90
           E LD  N  +Y     N ++  +  +   + + +  +    L ++  +  L+++     G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNW-NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 91  DIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM--VSLSNLSS 148
            +P  IG  + L VL    +    S  +     +  +  +  ++ +      + L     
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 149 VEHIYLHNNAINGLIPIALLRSSTLLTLD----LRDNKLFGRIPHQINELSNLHFLLLRG 204
           +    L  +AIN    +  ++  + ++L              I   I  L+ L  +    
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 205 NYLQG-------------------RIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
           +                               L+ L  ++L +      +P  L ++  
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (269), Expect = 1e-26
 Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 9/236 (3%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY--GQLFPNYMNLTHLRSLLL 59
           +  L +L L+ N  S           PSL  LDLS N     G    + +    LR L L
Sbjct: 327 LPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHW-IGNFSGLWVLLMSENYLQGSIPV 118
             N     M+   +    L+ L+  ++ L          +   L  L +S    +     
Sbjct: 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 119 QLGNLVCLEFIDISENSLSGSMVS--LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
               L  L  + ++ NS   + +S   +N +++  + L    +  +          L  L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           ++  N L        N+L +L  L    N ++          + L   +L++N + 
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (263), Expect = 6e-26
 Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 12/248 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             +  +L + R      L +      P L++L L+ N   G +    + L  L  L L  
Sbjct: 306 HFKWQSLSIIRCQ----LKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSR 359

Query: 62  NNFSGKMTD--GLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
           N  S         L +  L  L++S N     +         L  L    + L+      
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 120 -LGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRS-STLLTL 176
              +L  L ++DIS  +           L+S+  + +  N+        +  + + L  L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           DL   +L        + L  L  L +  N L     +   QL  L  +D S NR+     
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 237 SCLGNVSS 244
                  S
Sbjct: 539 ILQHFPKS 546

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 51/235 (21%), Positives = 84/235 (35%), Gaps = 12/235 (5%)

Query: 6   ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
           IT        S ++   I     S + +DLS N        ++ N + L+ L L      
Sbjct: 14  ITYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 66  GKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVC 125
                       L  L ++ N +    P      + L  L+  E  L       +G L+ 
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 126 LEFIDISENSLSGSMV--SLSNLSSVEHIYLHNNAINGLIPIAL----LRSSTLLTLDLR 179
           L+ ++++ N +    +    SNL+++ H+ L  N I  +    L          L+LD+ 
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ-LRKLGIMDLSHNRLNG 233
            N +   I  Q  +   LH L LRGN+    I     Q L  L +  L       
Sbjct: 190 LNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 54/256 (21%), Positives = 82/256 (32%), Gaps = 19/256 (7%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
              +DLS N     L    FS    L+ LDLS           +  L HL +L+L  N  
Sbjct: 34  TKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQG-SIPVQLGNL 123
                      T LE L     KL+      IG    L  L ++ N++    +P    NL
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 124 VCLEFIDISENSLSG----SMVSLSNLS-SVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178
             L  +D+S N +       +  L         + +  N I+  I     +   L  L L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTL 211

Query: 179 RDNKLFGRIP-HQINELSNLHFLLLRGNYLQG---------RIPNQLCQLRKLGIMDLSH 228
           R N     I    +  L+ LH   L     +           I   LC +       L++
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID-EFRLTY 270

Query: 229 NRLNGPIPSCLGNVSS 244
                        +++
Sbjct: 271 TNDFSDDIVKFHCLAN 286

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 3e-20
 Identities = 43/255 (16%), Positives = 80/255 (31%), Gaps = 19/255 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  L L+ N      S   FSG  SLE L                 L  L+ L + +
Sbjct: 79  LHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 62  NNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL----MSENYLQGSI 116
           N           S+ T L  +++S N +     + +        +     MS N +   I
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FI 196

Query: 117 PVQLGNLVCLEFIDISENSLSGSMV--SLSNLSSVEHIYLHNNAINGLIPIALLRSSTL- 173
             Q    + L  + +  N  S +++   L NL+ +    L          + +   S + 
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 174 -------LTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL 226
                      L     F     + + L+N+  + L G  +  +    + +  K   + +
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSI 314

Query: 227 SHNRLNGPIPSCLGN 241
              +L       L  
Sbjct: 315 IRCQLKQFPTLDLPF 329

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.0 bits (203), Expect = 6e-18
 Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 20/255 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD- 60
           +  L  L+++ N          FS   +L  +DLS N        +   L     + L  
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 61  --NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIP-HWIGNFSGLWVLLMSENYLQGSIP 117
             + N    + D       L  L +  N  S +I    + N +GL V  +     +    
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 118 VQ---------LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALL 168
           ++         L ++   EF     N  S  +V    L++V  + L   +I  L  +   
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306

Query: 169 RSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH 228
                 +L +   +L  + P    +L  L  L L  N  +G I  +   L  L  +DLS 
Sbjct: 307 FK--WQSLSIIRCQL-KQFPT--LDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSR 359

Query: 229 NRLNGPIPSCLGNVS 243
           N L+        ++ 
Sbjct: 360 NALSFSGCCSYSDLG 374

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 5/167 (2%)

Query: 80  VLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS 139
                + KLS  +P  I   S    + +S N L+        N   L+++D+S   +   
Sbjct: 15  TYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 140 MV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH 198
              +   L  + ++ L  N I    P +    ++L  L   + KL       I +L  L 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 199 FLLLRGNYLQG-RIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
            L +  N++   ++P     L  L  +DLS+N +     + L  +  
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 99.5 bits (249), Expect = 1e-24
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 15/231 (6%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            + ++ +L+L  N+   +LS    S    L  L ++ +           NLT L SL L+
Sbjct: 130 NLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLN 185

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N         L S T L       N+++   P  + N + L  L +  N +    P  L
Sbjct: 186 YNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            NL  L +++I  N +S  + ++ +L+ ++ + + +N I+ +  +  L    L +L L +
Sbjct: 240 ANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISDISVLNNLSQ--LNSLFLNN 296

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           N+L       I  L+NL  L L  N++    P  L  L K+   D ++  +
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 95.7 bits (239), Expect = 3e-23
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 15/236 (6%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            +  L  L L+ +N S        +    + +L+L  N+    L     N+T L  L + 
Sbjct: 108 NLTNLRELYLNEDNISDI---SPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVT 163

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            +         + + T L  L+++ N++    P  + + + L       N +    P  +
Sbjct: 164 ESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V 217

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            N+  L  + I  N ++  +  L+NLS +  + +  N I+ +  +  L    L  L++  
Sbjct: 218 ANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISDINAVKDLTK--LKMLNVGS 274

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           N++       +N LS L+ L L  N L       +  L  L  + LS N +    P
Sbjct: 275 NQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 93.4 bits (233), Expect = 2e-22
 Identities = 45/235 (19%), Positives = 97/235 (41%), Gaps = 17/235 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           + E I   L + + +  ++        S+  L ++              LT+L  L L+ 
Sbjct: 21  LAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNG 75

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +      L +   L  L +  NK++      + N + L  L ++E+ +    P  L 
Sbjct: 76  NQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LA 129

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           NL  +  +++  N     +  LSN++ + ++ +  + +  + PIA L    L +L L  N
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD--LYSLSLNYN 187

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           ++    P  +  L++LH+     N +    P  +  + +L  + + +N++    P
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.0 bits (219), Expect = 1e-20
 Identities = 53/243 (21%), Positives = 107/243 (44%), Gaps = 17/243 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           + +L  L +  N  +            +L  L L+ +N          NLT + SL L  
Sbjct: 87  LVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGA 141

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N+    ++  L + T L  L V+ +K+    P  I N + L+ L ++ N ++   P  L 
Sbjct: 142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LA 196

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           +L  L +     N ++  +  ++N++ +  + + NN I  L P+A L    L  L++  N
Sbjct: 197 SLTSLHYFTAYVNQIT-DITPVANMTRLNSLKIGNNKITDLSPLANLSQ--LTWLEIGTN 253

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
           ++     + + +L+ L  L +  N +     + L  L +L  + L++N+L       +G 
Sbjct: 254 QI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 242 VSS 244
           +++
Sbjct: 310 LTN 312

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.6 bits (218), Expect = 3e-20
 Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 17/234 (7%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           E++ +  L ++    +   S        +LE L+L+ N           NL  L +L + 
Sbjct: 42  ELESITKLVVAGEKVA---SIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIG 96

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N  +      L + T L  L ++ + +S   P  + N + ++ L +  N+    +   L
Sbjct: 97  TNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-L 151

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            N+  L ++ ++E+ +   +  ++NL+ +  + L+ N I  + P+A L S  L       
Sbjct: 152 SNMTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISPLASLTS--LHYFTAYV 208

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP 234
           N++    P  +  ++ L+ L +  N +    P  L  L +L  +++  N+++  
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.0 bits (193), Expect = 6e-17
 Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 14/207 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           M  L  L ++ +           +    L +L L+ N           +LT L       
Sbjct: 154 MTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYV 208

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +      + + T L  L + NNK++   P  + N S L  L +  N +       + 
Sbjct: 209 NQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VK 262

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           +L  L+ +++  N +S  +  L+NLS +  ++L+NN +       +   + L TL L  N
Sbjct: 263 DLTKLKMLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQ 208
            +    P  +  LS +         ++
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 14/207 (6%)

Query: 30  LETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLS 89
             TL         Q+FP+  +L      +L   + +  +T   L S  +  L V+  K++
Sbjct: 2   AATLATLPAPI-NQIFPD-ADLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKVA 57

Query: 90  GDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSV 149
             I   I   + L  L ++ N +    P  L NLV L  + I  N ++  + +L NL+++
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNL 112

Query: 150 EHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQG 209
             +YL+ + I+ + P+A L    + +L+L  N     +   ++ ++ L++L +  + ++ 
Sbjct: 113 RELYLNEDNISDISPLANLTK--MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD 169

Query: 210 RIPNQLCQLRKLGIMDLSHNRLNGPIP 236
             P  +  L  L  + L++N++    P
Sbjct: 170 VTP--IANLTDLYSLSLNYNQIEDISP 194

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 2e-24
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 17/233 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
              +  LDLS N  S ++S    +    LE L+LS+N  Y     +  +L+ LR+L L+N
Sbjct: 33  AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNN 89

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N         LL    +E L+ +NN +S  +        G   + ++ N +     +  G
Sbjct: 90  NYVQE-----LLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEG 141

Query: 122 NLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
               ++++D+  N +         ++  ++EH+ L  N I  +    +     L TLDL 
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK--LKTLDLS 199

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
            NKL   +  +    + + ++ LR N L   I   L   + L   DL  N  +
Sbjct: 200 SNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 23/213 (10%)

Query: 50  NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSE 109
           N    +   + +++    +     S+  ++ L++S N LS      +  F+ L +L +S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 110 NYLQGSIPVQLGNLVCLEFIDISENSLSG-----------------SMVSLSNLSSVEHI 152
           N L  ++   L +L  L  +D++ N +                   S VS S     ++I
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNI 125

Query: 153 YLHNNAINGLIPIALLRSSTLLTLDLRDNKLFG-RIPHQINELSNLHFLLLRGNYLQGRI 211
           YL NN I  L  +     S +  LDL+ N++              L  L L+ N++   +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 212 PNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
                   KL  +DLS N+L   +     + + 
Sbjct: 185 KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 6e-13
 Identities = 29/173 (16%), Positives = 64/173 (36%), Gaps = 10/173 (5%)

Query: 73  LSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDIS 132
            +    ++  V+++ L   +     +   +  L +S N L       L     LE +++S
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 133 ENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 192
            N L    + L +LS++  + L+NN +       LL   ++ TL   +N +  R+    +
Sbjct: 67  SNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVS--CS 117

Query: 193 ELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG-PIPSCLGNVSS 244
                  + L  N +            ++  +DL  N ++         +  +
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 5/156 (3%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
              +  LDL  N         + +   +LE L+L  N          +    L++L L +
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSS 200

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +  M     S+  +  +++ NNKL   I   +     L    +  N       ++  
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDF 257

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNN 157
                    +++ ++           +V  +  +  
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 25/150 (16%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 96  IGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYL 154
             N +   +  ++++ L+ ++     +   ++ +D+S N LS  S   L+  + +E + L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 155 HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQ 214
            +N +   + +  L +  L TLDL +N +      ++    ++  L    N +     ++
Sbjct: 66  SSNVLYETLDLESLST--LRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSR 118

Query: 215 LCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
               + +    L++N++        G  S 
Sbjct: 119 GQGKKNI---YLANNKITMLRDLDEGCRSR 145

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 115 SIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
           +I     N    +   ++++SL  ++ S   +  +V+ + L  N ++ +    L   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 174 LTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
             L+L  N L       +  LS L  L L  NY+Q     +L     +  +  ++N ++
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 5e-23
 Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 8/232 (3%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNY-MNLTHLRSLLLDNN 62
           E   LDL +N     L++  F+  P LE L+L+ N     + P    NL +LR+L L +N
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ-LG 121
                        + L  L++S NK+   + +   +   L  L + +N L   I  +   
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 122 NLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            L  LE + + + +L+     +LS+L  +  + L +  IN +   +  R   L  L++  
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ-LRKLGIMDLSHNRL 231
                 +        NL  L +    L   +P    + L  L  ++LS+N +
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.2 bits (224), Expect = 7e-21
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 12/236 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLL 59
              L  L+L+ N  S  +    F+   +L TL L +N    +L P  +   L++L  L +
Sbjct: 55  FPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDI 111

Query: 60  DNNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
             N     + D +      L+ L V +N L           + L  L + +  L  SIP 
Sbjct: 112 SENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT 169

Query: 119 Q-LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
           + L +L  L  + +   +++     S   L  ++ + + +      +    L    L +L
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229

Query: 177 DLRDNKLFGRIPHQ-INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
            +    L   +P+  +  L  L FL L  N +     + L +L +L  + L   +L
Sbjct: 230 SITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.5 bits (204), Expect = 3e-18
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 2/183 (1%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  L L + N +  +     S    L  L L + N       ++  L  L+ L + +
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
             +   MT   L    L  L++++  L+      + +   L  L +S N +       L 
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269

Query: 122 NLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            L+ L+ I +    L+     +   L+ +  + +  N +  L          L TL L  
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 181 NKL 183
           N L
Sbjct: 330 NPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 5/176 (2%)

Query: 75  STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ-LGNLVCLEFIDISE 133
            T   +L++  N++         +F  L  L ++EN +  ++      NL  L  + +  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 134 NSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI- 191
           N L    +   + LS++  + +  N I  L+         L +L++ DN L   I H+  
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAF 148

Query: 192 NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWRE 247
           + L++L  L L    L       L  L  L ++ L H  +N         +   + 
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.0 bits (237), Expect = 1e-22
 Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 18/256 (7%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            +  L  LD+S N  S      + +   +LE+L  +NN            LT+L  L L+
Sbjct: 175 NLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 229

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N         L S T L  L+++NN++S   P  +   + L  L +  N +    P  L
Sbjct: 230 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 283

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  L  ++++EN L   +  +SNL ++ ++ L+ N I+ + P++ L    L  L   +
Sbjct: 284 AGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDISPVSSLTK--LQRLFFYN 340

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           NK+       +  L+N+++L    N +    P  L  L ++  + L+         +   
Sbjct: 341 NKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 241 NVSSWREVIDDYSLLS 256
           NVS    V +    L 
Sbjct: 397 NVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 19/236 (8%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            +  L  L    N  +        +   +LE LD+S+N            LT+L SL+  
Sbjct: 154 GLTSLQQLSFG-NQVTDLKP---LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 207

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN  S      L   T L+ L+++ N+L       + + + L  L ++ N +    P  L
Sbjct: 208 NNQISD--ITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--L 261

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  L  + +  N +S ++  L+ L+++ ++ L+ N +  + PI+ L++  L  L L  
Sbjct: 262 SGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYF 318

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           N +    P  ++ L+ L  L    N +     + L  L  +  +   HN+++   P
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 52/233 (22%), Positives = 85/233 (36%), Gaps = 16/233 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  L L+ N           +   +L  LDL+NN            LT L  L L  
Sbjct: 220 LTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGA 274

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  S      L   T L  L ++ N+L    P  I N   L  L +  N +    P  + 
Sbjct: 275 NQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           +L  L+ +    N +S  + SL+NL+++  +   +N I+ L P+A L    +  L L D 
Sbjct: 329 SLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQ 385

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP 234
                  +    +S  + +      L    P  +         D++ N  +  
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 54/235 (22%), Positives = 100/235 (42%), Gaps = 19/235 (8%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           + E +   L + N +  +S    +    + TL         +       L +L  +   N
Sbjct: 23  LAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 77

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +      L + T L  + ++NN+++   P  + N + L  L +  N +    P  L 
Sbjct: 78  NQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LK 131

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           NL  L  +++S N++S  + +LS L+S++ +   N  +  L P+A L +  L  LD+  N
Sbjct: 132 NLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ-VTDLKPLANLTT--LERLDISSN 187

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           K+       + +L+NL  L+   N +    P  L  L  L  + L+ N+L     
Sbjct: 188 KV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 19/235 (8%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  ++ S N  +             L  + ++NN           NLT+L  L L N
Sbjct: 67  LNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN 121

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +       L++  L  L +S+N +S      +   + L  L    N +    P  L 
Sbjct: 122 NQITDIDPLKNLTN--LNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP--LA 174

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           NL  LE +DIS N +S  +  L+ L+++E +   NN I+ + P+ +L +  L  L L  N
Sbjct: 175 NLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGN 231

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           +L  +    +  L+NL  L L  N +    P  L  L KL  + L  N+++   P
Sbjct: 232 QL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 19/236 (8%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           ++ ++ TL   R       S        +L  ++ SNN           NLT L  +L++
Sbjct: 44  DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMN 98

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           NN  +      L + T L  L + NN+++   P  + N + L  L +S N +       L
Sbjct: 99  NNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--L 152

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  L+ +             L+NL+++E + + +N ++ +  +A L +  L +L   +
Sbjct: 153 SGLTSLQQLSFGNQVTDLK--PLANLTTLERLDISSNKVSDISVLAKLTN--LESLIATN 208

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           N++    P  +  L+NL  L L GN L+      L  L  L  +DL++N+++   P
Sbjct: 209 NQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 18/232 (7%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           L +  ++++    ++     +         L   N       +  +L  + +L  D    
Sbjct: 3   LGSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI 58

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
                DG+     L  +N SNN+L+   P  + N + L  +LM+ N +    P  L NL 
Sbjct: 59  KS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 125 CLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLF 184
            L  + +  N ++  +  L NL+++  + L +N I+ +  ++ L S   L+     N++ 
Sbjct: 113 NLTGLTLFNNQIT-DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF---GNQVT 168

Query: 185 GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
              P  +  L+ L  L +  N +     + L +L  L  +  ++N+++   P
Sbjct: 169 DLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 36/204 (17%)

Query: 29  SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKL 88
            L +  ++ +    Q+F +   L      +L   N +  ++   L    +  L      +
Sbjct: 2   PLGSATITQDTPINQIFTDT-ALAEKMKTVLGKTNVTDTVSQTDLDQ--VTTLQADRLGI 58

Query: 89  SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSS 148
                                          +  L  L  I+ S N L+  +  L NL+ 
Sbjct: 59  K--------------------------SIDGVEYLNNLTQINFSNNQLT-DITPLKNLTK 91

Query: 149 VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ 208
           +  I ++NN I  + P+A L  + L  L L +N++    P  +  L+NL+ L L  N + 
Sbjct: 92  LVDILMNNNQIADITPLANL--TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS 147

Query: 209 GRIPNQLCQLRKLGIMDLSHNRLN 232
               + L  L  L  +   +   +
Sbjct: 148 D--ISALSGLTSLQQLSFGNQVTD 169

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 5/228 (2%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDNN 62
               L+L  NN    +    F     LE L L  N+   Q+    +  L  L +L L +N
Sbjct: 76  NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDN 133

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ-LG 121
             +   +      + L  L + NN +     +       L  L + E      I      
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
            L  L+++++   ++   M +L+ L  +E + +  N    + P +    S+L  L + ++
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229
           ++     +  + L++L  L L  N L     +    LR L  + L HN
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 8e-17
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 13/210 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLL 59
           +  L  L L RN+   ++    F+G  SL TL+L +N     + P+     L+ LR L L
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWL 154

Query: 60  DNNNFSGKMTDGLLSS-TLLEVLNVS-NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP 117
            NN     +     +    L  L++    KL             L  L +    ++  +P
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP 212

Query: 118 VQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
             L  LV LE +++S N        S   LSS++ +++ N+ ++ +   A    ++L+ L
Sbjct: 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 177 DLRDNKLFGRIPHQI-NELSNLHFLLLRGN 205
           +L  N L   +PH +   L  L  L L  N
Sbjct: 272 NLAHNNL-SSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 7/162 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLD 60
           + +L  L L  N     +    F+  PSL  LDL        +    +  L +L+ L L 
Sbjct: 146 LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ- 119
             N         L    LE L +S N      P      S L  L +  + +   I    
Sbjct: 205 MCNIKDMPNLTPLVG--LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNA 261

Query: 120 LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAIN 160
              L  L  ++++ N+LS       + L  +  ++LH+N  N
Sbjct: 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 36/232 (15%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNF---YGQLFPNYMNLTHLRSLLLD 60
           +   +  +R   S E+ + I     +   L+L  NN        F +   L HL  L L 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRH---LHHLEVLQLG 107

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N+              L  L + +N L+          S L  L +  N ++ SIP   
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSY- 165

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYL-HNNAINGLIPIALLRSSTLLTLDLR 179
                                + + + S+  + L     +  +   A      L  L+L 
Sbjct: 166 ---------------------AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
              +   +P+ +  L  L  L + GN+     P     L  L  + + ++++
Sbjct: 205 MCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVS 142
           +   LS ++P  I   S    L + EN +Q        +L  LE + +  NS+    + +
Sbjct: 62  TRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118

Query: 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFL- 200
            + L+S+  + L +N +  +   A    S L  L LR+N +   IP    N + +L  L 
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLD 177

Query: 201 LLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           L     L+         L  L  ++L    + 
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.8 bits (215), Expect = 1e-19
 Identities = 48/242 (19%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCP--SLETLDLSNNNFYGQLFPNYMNLTHLRSLLL 59
              ++      +N   +  +  F+G    S+  LDLS+   +      +  L  L+ L L
Sbjct: 239 AHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
             N  +    +       L+VLN+S N L             +  + + +N++       
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357

Query: 120 LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
              L  L+ +D+ +N+L+    ++  + S+  I+L  N +  L  I L    T   + L 
Sbjct: 358 FKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLS 409

Query: 180 DNKLFG-RIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ-LRKLGIMDLSHNRLNGPIPS 237
           +N+L    I + +  + +L  L+L  N       +Q       L  + L  N L     +
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 238 CL 239
            L
Sbjct: 470 EL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.9 bits (210), Expect = 6e-19
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 25/255 (9%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNF---YGQLFPNYMNLTHLRSLL 58
           +K L  LDLS+N        P F    SL+++D S+N             +    L    
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFS 180

Query: 59  LDNNNFSGKMTDGLLSS------TLLEVLNVSNNKLSGDIP------------HWIGNFS 100
           L  N+   +++             +LE+L+VS N  + DI               +    
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 101 GLWVLLMSENYLQGSIPVQLGNLVC--LEFIDISENSLSG-SMVSLSNLSSVEHIYLHNN 157
            +       + ++         L    +  +D+S   +   +      L  ++ + L  N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ 217
            IN +   A      L  L+L  N L          L  + ++ L+ N++          
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 218 LRKLGIMDLSHNRLN 232
           L KL  +DL  N L 
Sbjct: 361 LEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 50/240 (20%), Positives = 100/240 (41%), Gaps = 23/240 (9%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            + ++  +DL +N+ +  +    F     L+TLDL +N            +  +  + L 
Sbjct: 336 GLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLS 389

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
            N     +    L+     ++++S N+L   DI +++     L +L++++N        Q
Sbjct: 390 GNKLV-TLPKINLT---ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 120 L-GNLVCLEFIDISENSLSGSMVS------LSNLSSVEHIYLHNNAINGLIPIALLRSST 172
                  LE + + EN L  +  +         LS ++ +YL++N +N L P      + 
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505

Query: 173 LLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           L  L L  N+L     + +   +NL  L +  N L    P+       L ++D++HN+  
Sbjct: 506 LRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 4e-17
 Identities = 44/260 (16%), Positives = 82/260 (31%), Gaps = 30/260 (11%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSG 66
                  N +      +     + E L LS N        ++  L  L+ L L +     
Sbjct: 8   IAFYRFCNLTQ-----VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 67  KMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI--PVQLGNL 123
            +      +   L +L++ ++K+    P        L+ L +    L  ++       NL
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 124 VCLEFIDISENSLS--GSMVSLSNLSSVEHIYLHNNAINGLIPIAL--LRSSTLLTLDLR 179
             L  +D+S+N +       S   L+S++ I   +N I  +    L  L+  TL    L 
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 180 DNKLFGRIPHQINELSN------LHFLLLRGN------------YLQGRIPNQLCQLRKL 221
            N L+ R+     +  N      L  L + GN             +       L     +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 222 GIMDLSHNRLNGPIPSCLGN 241
                  + +  P  +    
Sbjct: 243 MGAGFGFHNIKDPDQNTFAG 262

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 6e-17
 Identities = 46/258 (17%), Positives = 86/258 (33%), Gaps = 30/258 (11%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLD 60
           +     L LS N     ++   F     L+ L+L +      +    + NL +LR L L 
Sbjct: 23  LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDI--PHWIGNFSGLWVLLMSENYLQG-SIP 117
           ++       D       L  L +    LS  +    +  N   L  L +S+N ++   + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 118 VQLGNLVCLEFIDISENSLS----GSMVSLSNLSSVEHIYLHNNAINGLIPIAL------ 167
              G L  L+ ID S N +       +  L    ++    L  N++   + +        
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 168 LRSSTLLTLDLRDNKLFGRIP------------HQINELSNLHFLLLRGNYLQGRIPNQL 215
            R+  L  LD+  N     I               +    ++       + ++    N  
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 216 CQLRKLGI--MDLSHNRL 231
             L +  +  +DLSH  +
Sbjct: 261 AGLARSSVRHLDLSHGFV 278

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 53/253 (20%), Positives = 88/253 (34%), Gaps = 29/253 (11%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGC-----PSLETLDLSNNNFYGQLFPNYMN----- 50
           + K L    L+ N+    +S              LE LD+S N +   +  N+ N     
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231

Query: 51  -------LTHLRSLLLDNNNFSGKMTDGL--LSSTLLEVLNVSNNKLSGDIPHWIGNFSG 101
                    H+       +N      +    L+ + +  L++S+  +             
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 102 LWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAIN 160
           L VL ++ N +          L  L+ +++S N L      +   L  V +I L  N I 
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK 220
            +          L TLDLRDN L       I+ + ++  + L GN L   +P        
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPKINLTANL 405

Query: 221 LGIMDLSHNRLNG 233
           +    LS NRL  
Sbjct: 406 I---HLSENRLEN 415

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 2e-19
 Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 9/209 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNY--MNLTHLRSLLL 59
           +K L  L  + N      +       PSLE LDLS N    +   +      T L+ L L
Sbjct: 324 LKSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWI-GNFSGLWVLLMSENYLQGSIPV 118
             N     M+   L    LE L+  ++ L       +  +   L  L +S  + + +   
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 119 QLGNLVCLEFIDISENSLSGSMVS--LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
               L  LE + ++ NS   + +    + L ++  + L    +  L P A    S+L  L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGN 205
           ++  N+L        + L++L  + L  N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 6e-18
 Identities = 49/248 (19%), Positives = 95/248 (38%), Gaps = 11/248 (4%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           +    L+  ++  +    +F+   ++ +  L +     +   ++      + L L N  F
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKF 316

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ--GSIPVQLGN 122
               T  L S   L+ L  ++NK          +   L  L +S N L   G        
Sbjct: 317 GQFPTLKLKS---LKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSST-LLTLDLRDN 181
              L+++D+S N +     +   L  +EH+   ++ +  +   ++  S   L+ LD+   
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQ-LCQLRKLGIMDLSHNRLNGPIPSCLG 240
                     N LS+L  L + GN  Q         +LR L  +DLS  +L    P+   
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 241 NVSSWREV 248
           ++SS + +
Sbjct: 492 SLSSLQVL 499

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 7e-18
 Identities = 57/241 (23%), Positives = 85/241 (35%), Gaps = 15/241 (6%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
              LDLS N     L    F   P L+ LDLS           Y +L+HL +L+L  N  
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ-GSIPVQLGNL 123
                      + L+ L      L+      IG+   L  L ++ N +Q   +P    NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 124 VCLEFIDISENSLS----GSMVSLSNLS-SVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178
             LE +D+S N +       +  L  +      + L  N +N  I     +   L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 207

Query: 179 RDNKLFGRIPHQ-INELSNLHFLLL------RGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           R+N     +    I  L+ L    L          L+    + L  L  L I +     L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 232 N 232
           +
Sbjct: 268 D 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 8e-18
 Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 14/252 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  + +  L             FS     + L+L N  F        + L  L+ L   +
Sbjct: 281 LTNVSSFSLVSVTIE---RVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTS 334

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLS--GDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
           N      ++  L S  LE L++S N LS  G         + L  L +S N +  ++   
Sbjct: 335 NKGGNAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 120 LGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD 177
              L  LE +D   ++L          +L ++ ++ + +              S+L  L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 178 LRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           +  N         I  EL NL FL L    L+   P     L  L +++++ N+L     
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 237 SCLGNVSSWREV 248
                ++S +++
Sbjct: 512 GIFDRLTSLQKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 2   MKELITLDLSRNNFSG-ELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +  L  LDLSRN  S          G  SL+ LDLS N     +  N++ L  L  L   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404

Query: 61  NNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
           ++N        +  S   L  L++S+              S L VL M+ N  Q +    
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 120 -LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD 177
               L  L F+D+S+  L   S  + ++LSS++ + + +N +  +      R ++L  + 
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 178 LRDNKL 183
           L  N  
Sbjct: 525 LHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 47/213 (22%), Positives = 77/213 (36%), Gaps = 8/213 (3%)

Query: 28  PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK 87
            S + LDLS N        ++ +   L+ L L              S + L  L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 88  LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS--GSMVSLSN 145
           +           S L  L+  E  L       +G+L  L+ ++++ N +         SN
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 146 LSSVEHIYLHNNAINGLIPIALLR----SSTLLTLDLRDNKLFGRIPHQINELSNLHFLL 201
           L+++EH+ L +N I  +    L          L+LDL  N +   I     +   LH L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLT 206

Query: 202 LRGNYLQGRIPNQLCQ-LRKLGIMDLSHNRLNG 233
           LR N+    +     Q L  L +  L       
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 9e-16
 Identities = 51/246 (20%), Positives = 86/246 (34%), Gaps = 16/246 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             EL  LDLSR      +    +     L TL L+ N         +  L+ L+ L+   
Sbjct: 51  FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKL-SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N +      +     L+ LNV++N + S  +P +  N + L  L +S N +Q      L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 121 GNLVCLEF----IDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIP---IALLRSSTL 173
             L  +      +D+S N ++           +  + L NN  +  +    I  L    +
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 174 LTLDLRDNKLFGRIPH----QINELSNLHFLLLRGNYLQG---RIPNQLCQLRKLGIMDL 226
             L L + +  G +       +  L NL     R  YL      I +    L  +    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 227 SHNRLN 232
               + 
Sbjct: 290 VSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.4 bits (170), Expect = 9e-14
 Identities = 53/269 (19%), Positives = 81/269 (30%), Gaps = 45/269 (16%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNF---YGQLFPNYMNLTHLRSLL 58
           +K L  L+++ N          FS   +LE LDLS+N     Y         +  L   L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 59  LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWI---------------------- 96
             + N    +  G      L  L + NN  S ++                          
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 97  ------GNFSGLWVLLMSENYLQG------SIPVQLGNLVCLEFIDISENSLSGSMVSLS 144
                     GL  L + E  L         I      L  +    +   ++   +   S
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS 301

Query: 145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG 204
                +H+ L N        + L    +L  L    NK  G    +++ L +L FL L  
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTSNKG-GNAFSEVD-LPSLEFLDLSR 356

Query: 205 NYLQ--GRIPNQLCQLRKLGIMDLSHNRL 231
           N L   G           L  +DLS N +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 5/165 (3%)

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-S 142
                   IP  +        L +S N L+        +   L+ +D+S   +      +
Sbjct: 15  MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL 202
             +LS +  + L  N I  L   A    S+L  L   +  L       I  L  L  L +
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 203 RGNYLQ-GRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWR 246
             N +Q  ++P     L  L  +DLS N++     + L  +    
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLL 58
            +++L  LD   +N        +F    +L  LD+S+ +   ++  N +   L+ L  L 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLK 451

Query: 59  LDNNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP 117
           +  N+F       + +    L  L++S  +L    P    + S L VL M+ N L+    
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 118 VQLGNLVCLEFIDISENSLSGS 139
                L  L+ I +  N    S
Sbjct: 512 GIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNY-MNLTHLRSLLLD 60
           ++ LI LD+S  +        IF+G  SLE L ++ N+F     P+    L +L  L L 
Sbjct: 420 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP 117
                        S + L+VLN+++N+L           + L  + +  N    S P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLD 60
           +  L  L ++ N+F       IF+   +L  LDLS      QL P  + +L+ L+ L + 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMA 502

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPH 94
           +N             T L+ + +  N      P 
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.7 bits (212), Expect = 2e-19
 Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 29/251 (11%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
                   ++ ++   +    +     +++ LDLS N        +    T L  L L +
Sbjct: 9   GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLS------------------GDIPHWIGNFSGLW 103
           N     +    LS+  L  L+++NN +                     +        G  
Sbjct: 68  NVLYETLDLESLST--LRTLDLNNNYVQELLVGPSIETLHAANNNISRVS--CSRGQGKK 123

Query: 104 VLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAING 161
            + ++ N +     +  G    ++++D+  N +         ++  ++EH+ L  N I  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL 221
           +    +     L TLDL  NKL   +  +    + + ++ LR N L   I   L   + L
Sbjct: 184 VKGQVVFAK--LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 222 GIMDLSHNRLN 232
              DL  N  +
Sbjct: 240 EHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 8e-17
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 13/223 (5%)

Query: 23  IFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82
           I       +   +++++    L     +  +++ L L  N  S      L   T LE+LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 83  VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS 142
           +S+N L  +    + + S L  L ++ NY+Q     +L     +E +  + N++  S VS
Sbjct: 65  LSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI--SRVS 115

Query: 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFG-RIPHQINELSNLHFLL 201
            S     ++IYL NN I  L  +     S +  LDL+ N++              L  L 
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 202 LRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
           L+ N++   +  Q+    KL  +DLS N+L   +     + + 
Sbjct: 176 LQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAG 215

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 30/249 (12%), Positives = 73/249 (29%), Gaps = 12/249 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
              +  LDL  N         + +   +LE L+L  N  Y       +    L++L L +
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSS 200

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ-GSIPVQL 120
           N  +  M     S+  +  +++ NNKL   I   +     L    +  N    G++    
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIAL-----LRSSTLLT 175
                ++ +         +  +    +     +        L          L+      
Sbjct: 259 SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 176 LDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI 235
           L  + ++   R+  +    +    +       +  I     + +    ++     L+  +
Sbjct: 318 LSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 236 PSCLGNVSS 244
            +     + 
Sbjct: 377 SNGRRAHAE 385

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 34/236 (14%), Positives = 64/236 (27%), Gaps = 10/236 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             +L TLDLS N  +  +  P F     +  + L NN     +        +L    L  
Sbjct: 190 FAKLKTLDLSSNKLA-FMG-PEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRG 246

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N F    T     S    V  V+   +           +   +        +        
Sbjct: 247 NGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305

Query: 122 NLVCL-----EFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
            L+ L       +    +          N +    I         +I    LR    +TL
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITL 365

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           + +   L  ++ +     + L   L +       + +   +   L ++     R  
Sbjct: 366 EQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 115 SIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
           +I     N    +   ++++SL  ++ S   +  +V+ + L  N ++ +    L   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 174 LTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
             L+L  N L       +  LS L  L L  NY+Q     +L     +  +  ++N ++
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 17/236 (7%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDN 61
            +   LDL  N  + E+    F    +L TL L NN    ++ P  +  L  L  L L  
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSK 109

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQ-GSIP 117
           N    ++ + +  +  L+ L V  N+++  +      F+G   + V+ +  N L+   I 
Sbjct: 110 NQLK-ELPEKMPKT--LQELRVHENEIT-KVRK--SVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 118 VQ-LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
                 +  L +I I++ ++  + +      S+  ++L  N I  +   +L   + L  L
Sbjct: 164 NGAFQGMKKLSYIRIADTNI--TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
            L  N +       +    +L  L L  N L  ++P  L   + + ++ L +N ++
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.1 bits (193), Expect = 5e-17
 Identities = 49/240 (20%), Positives = 93/240 (38%), Gaps = 19/240 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +K L TL L  N  S ++S   F+    LE L LS N    +  P  M    L+ L +  
Sbjct: 75  LKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL--KELPEKM-PKTLQELRVHE 130

Query: 62  NNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDI--PHWIGNFSGLWVLLMSENYLQGSIPV 118
           N  + K+   + +    + V+ +  N L               L  + +++  +  +IP 
Sbjct: 131 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

Query: 119 QLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD 177
            L     L  + +  N ++     SL  L+++  + L  N+I+ +   +L  +  L  L 
Sbjct: 189 GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 178 LRDNKLFGRIPHQINELSNLHFLLLRGNYLQG------RIPNQLCQLRKLGIMDLSHNRL 231
           L +NKL  ++P  + +   +  + L  N +          P    +      + L  N +
Sbjct: 247 LNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 39/230 (16%), Positives = 83/230 (36%), Gaps = 26/230 (11%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLLDNN 62
           L  L +  N  + ++ + +F+G   +  ++L  N        N     +  L  + + + 
Sbjct: 123 LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
           N +  +  GL  S  L  L++  NK++      +   + L  L +S N +       L N
Sbjct: 182 NIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182
              L  + ++ N L      L++   ++ +YLHNN I+ +                    
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP------------- 285

Query: 183 LFGRIPHQINELSNLHFLLLRGNYLQGRI--PNQLCQLRKLGIMDLSHNR 230
                P    + ++   + L  N +Q     P+    +     + L + +
Sbjct: 286 -----PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLL 59
           MK+L  + ++  N +  + + +    PSL  L L  N              L +L  L L
Sbjct: 170 MKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKI--TKVDAASLKGLNNLAKLGL 223

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQG----- 114
             N+ S      L ++  L  L+++NNKL   +P  + +   + V+ +  N +       
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 115 -SIPVQLGNLVCLEFIDISENSLSGSMVS---LSNLSSVEHIYLHNN 157
              P           + +  N +    +       +     + L N 
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 17/218 (7%)

Query: 22  PIFSGCP-----SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSST 76
           P+   CP      L  +  S+     +  P  +       L L NN  +        +  
Sbjct: 20  PMGPVCPFRCQCHLRVVQCSDLGL--EKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLK 76

Query: 77  LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSL 136
            L  L + NNK+S   P        L  L +S+N L+  +P ++     L+ + + EN +
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEI 133

Query: 137 SG-SMVSLSNLSSVEHIYLHNNAIN--GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 193
           +       + L+ +  + L  N +   G+   A      L  + + D  +   IP  +  
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL-- 190

Query: 194 LSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
             +L  L L GN +       L  L  L  + LS N +
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 47/235 (20%), Positives = 83/235 (35%), Gaps = 8/235 (3%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLLDN 61
               L+L  N     L   +F     L  L LS+N    +   +      T L+ L L  
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPH-WIGNFSGLWVLLMSENYLQGSIPVQL 120
           N     M+   L    LE L+  ++ L          +   L  L +S  + + +     
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 121 GNLVCLEFIDISENSLSGSMVS--LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178
             L  LE + ++ NS   + +    + L ++  + L    +  L P A    S+L  L++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206

Query: 179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL-RKLGIMDLSHNRLN 232
             N  F         L++L  L    N++      +L      L  ++L+ N   
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.1 bits (206), Expect = 5e-19
 Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 8/211 (3%)

Query: 1   EMKELITLDLSRNNFS-GELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLL 59
           ++ +L  L LS N  S          G  SL+ LDLS N     +  N++ L  L  L  
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDF 108

Query: 60  DNNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
            ++N        +  S   L  L++S+              S L VL M+ N  Q +   
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 119 Q-LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
                L  L F+D+S+  L   S  + ++LSS++ + + +N    L        ++L  L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 177 DLRDNKLFGRIPHQI--NELSNLHFLLLRGN 205
           D   N +      Q   +  S+L FL L  N
Sbjct: 229 DYSLNHI-MTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 48/232 (20%), Positives = 81/232 (34%), Gaps = 14/232 (6%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDNNNFS 65
            +  +    +  +   I     S   L+L +N     L    +  LT L  L L +N  S
Sbjct: 11  EIRCNSKGLT-SVPTGIP---SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 66  GKMTDGLLSSTL--LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL-GN 122
            K            L+ L++S N +   +         L  L    + L+      +  +
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 123 LVCLEFIDISENSLSG-SMVSLSNLSSVEHIYL-HNNAINGLIPIALLRSSTLLTLDLRD 180
           L  L ++DIS            + LSS+E + +  N+     +P        L  LDL  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 181 NKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
            +L  ++     N LS+L  L +  N            L  L ++D S N +
Sbjct: 185 CQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 8/187 (4%)

Query: 52  THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLW---VLLMS 108
           +    L L++N             T L  L++S+N LS        +  G      L +S
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLS 86

Query: 109 ENYLQGSIPVQLGNLVCLEFIDISENSLS--GSMVSLSNLSSVEHIYLHNNAINGLIPIA 166
            N +  ++      L  LE +D   ++L          +L ++ ++ + +          
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 167 LLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD 225
               S+L  L +  N         I  EL NL FL L    L+   P     L  L +++
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 226 LSHNRLN 232
           +SHN   
Sbjct: 206 MSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 8/158 (5%)

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-- 141
           ++  L+  +P  I   S    L +  N LQ         L  L  + +S N LS      
Sbjct: 15  NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71

Query: 142 -SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHF 199
            S    +S++++ L  N +   +    L    L  LD + + L       +   L NL +
Sbjct: 72  QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 200 LLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237
           L +   + +         L  L ++ ++ N        
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 4e-19
 Identities = 46/265 (17%), Positives = 95/265 (35%), Gaps = 13/265 (4%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
                     +             +  P    L+L +     Q       L+HL+ + +D
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTID 112

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
                 ++ D +     LE L ++ N L   +P  I + + L  L +        +P  L
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 121 GN---------LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSS 171
            +         LV L+ + +    +     S++NL +++ + + N+ ++ L   A+    
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLP 229

Query: 172 TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
            L  LDLR        P      + L  L+L+       +P  + +L +L  +DL     
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 232 NGPIPSCLGNVSSWREVIDDYSLLS 256
              +PS +  + +   ++    L +
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 17/229 (7%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLL 59
            +  L  + +       EL          LETL L+ N    +  P  + +L  LR L +
Sbjct: 102 RLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSI 157

Query: 60  DNNN---------FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSEN 110
                         S   +        L+ L +    +   +P  I N   L  L +  +
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

Query: 111 YLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLR 169
            L  ++   + +L  LE +D+   +   +        + ++ + L + +    +P+ + R
Sbjct: 217 PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 170 SSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL 218
            + L  LDLR      R+P  I +L     +L+  +       ++    
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 31/229 (13%), Positives = 73/229 (31%), Gaps = 20/229 (8%)

Query: 27  CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86
               E L    +                 +   +  + + +      +S   ++   +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNNPQIETRTGR 66

Query: 87  KLSGDIPHWIGNFS--GLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS 144
            L       + + +  G   L +    L    P Q   L  L+ + I    L     ++ 
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQ 124

Query: 145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI---------NELS 195
             + +E + L  N +  L P ++   + L  L +R       +P  +           L 
Sbjct: 125 QFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 196 NLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
           NL  L L    ++  +P  +  L+ L  + + ++ L+  +   + ++  
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK 230

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 7/153 (4%)

Query: 93  PHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHI 152
            H   + SG   L    +         L         D +    +      +N ++ +  
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW---RQANSNNPQIE 61

Query: 153 YLHNNAINGLIP-IALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI 211
                A+      +        + L+LR   L  + P Q   LS+L  + +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 212 PNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
           P+ + Q   L  + L+ N L   +P+ + +++ 
Sbjct: 120 PDTMQQFAGLETLTLARNPLRA-LPASIASLNR 151

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.5 bits (207), Expect = 5e-19
 Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 10/231 (4%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDN 61
            +   LDL  N+ S EL +  F G   L  L L NN    ++    +  L  L+ L +  
Sbjct: 54  PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISK 111

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ-GSIPVQL 120
           N+   ++   L SS  L  L + +N++             +  + M  N L+        
Sbjct: 112 NHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            + + L ++ ISE  L  + +      ++  ++L +N I  +    LLR S L  L L  
Sbjct: 169 FDGLKLNYLRISEAKL--TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           N++       ++ L  L  L L  N L  R+P  L  L+ L ++ L  N +
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 9e-16
 Identities = 53/239 (22%), Positives = 88/239 (36%), Gaps = 18/239 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           ++ L  L L  N  S ++    FS    L+ L +S N+      P  +  + L  L + +
Sbjct: 77  LQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL--VEIPPNL-PSSLVELRIHD 132

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG--LWVLLMSENYLQGSIPVQ 119
           N               +  + +  N L  +     G F G  L  L +SE  L   IP  
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKLT-GIPKD 190

Query: 120 LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178
           L     L  + +  N +    +  L   S +  + L +N I  +   +L    TL  L L
Sbjct: 191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLR------KLGIMDLSHNRL 231
            +NKL  R+P  + +L  L  + L  N +     N  C +           + L +N +
Sbjct: 249 DNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.3 bits (170), Expect = 6e-14
 Identities = 44/243 (18%), Positives = 90/243 (37%), Gaps = 26/243 (10%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLL 59
           +++L  L +S+N+   E+   +     SL  L + +N    +  P  +   L ++  + +
Sbjct: 101 LRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRI--RKVPKGVFSGLRNMNCIEM 154

Query: 60  DNNNF-SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
             N   +     G      L  L +S  KL+  IP        L  L +  N +Q +I +
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIEL 210

Query: 119 Q-LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
           + L     L  + +  N +      SLS L ++  ++L NN ++  +P  L     L  +
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVV 269

Query: 177 DLRDNKL-------FGRIPHQINELSNLHFLLLRGNYLQGRI--PNQLCQLRKLGIMDLS 227
            L  N +       F  +   +   +  + + L  N +      P     +     +   
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVK-RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 228 HNR 230
           + +
Sbjct: 329 NYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 51/221 (23%), Positives = 79/221 (35%), Gaps = 16/221 (7%)

Query: 18  ELSRPIFSGCP-----SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGL 72
            L     + CP      L  +  S+     +  P  ++      L L NN+ S    D  
Sbjct: 18  SLPPTYSAMCPFGCHCHLRVVQCSDLGL--KAVPKEIS-PDTTLLDLQNNDISELRKDDF 74

Query: 73  LSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDIS 132
                L  L + NNK+S            L  L +S+N+L   IP  L     L  + I 
Sbjct: 75  KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIH 131

Query: 133 ENSLSG-SMVSLSNLSSVEHIYLHNNAI-NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 190
           +N +        S L ++  I +  N + N            L  L + + KL   IP  
Sbjct: 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPKD 190

Query: 191 INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           +     L+ L L  N +Q      L +  KL  + L HN++
Sbjct: 191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 126 LEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLF 184
              +D+  N +S         L  +  + L NN I+ +   A      L  L +  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL- 114

Query: 185 GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
             IP  +   S+L  L +  N ++         LR +  +++  N L 
Sbjct: 115 VEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.4 bits (209), Expect = 8e-19
 Identities = 36/251 (14%), Positives = 83/251 (33%), Gaps = 22/251 (8%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNY-MNLTHLRSLLLD 60
           +  L  L+L  N +       +F    +L+TL + N   + ++       LT L  L + 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
             +     +  L S   +  L +  ++ +  +  +    S +  L + +  L       L
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 121 GNLVCLEFI-------------------DISENSLSGSMVSLSNLSSVEHIYLHNNAING 161
                   +                    +    L  S V   + +       + +  + 
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ-LRK 220
           +  +  + + T+  L +    LF  +    + L  +  + +  + +   +P    Q L+ 
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335

Query: 221 LGIMDLSHNRL 231
           L  +DLS N +
Sbjct: 336 LEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 44/209 (21%), Positives = 83/209 (39%), Gaps = 15/209 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM---NLTHLRSLL 58
           ++++  + +  +     +         SLE LDLS N    +   N         L++L+
Sbjct: 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 59  LDNNNFS--GKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI 116
           L  N+     K  + LL+   L  L++S N     +P        +  L +S   ++   
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-- 424

Query: 117 PVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
            V+      LE +D+S N+L    + L  L   + +Y+  N +  L   +L     LL +
Sbjct: 425 -VKTCIPQTLEVLDVSNNNLDSFSLFLPRL---QELYISRNKLKTLPDASLFPV--LLVM 478

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGN 205
            +  N+L        + L++L  + L  N
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 9/230 (3%)

Query: 7   TLDLSRNNFSGELSRPIFSGCP-SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
             D    +F+      I SG   ++++LDLS N        +     +L+ L+L ++  +
Sbjct: 9   VCDGRSRSFTS-----IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 66  GKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQG-SIPVQLGNLV 124
               D   S   LE L++S+N LS     W G  S L  L +  N  Q   +     NL 
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 125 CLEFIDISENSLSGSM--VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182
            L+ + I        +  +  + L+S+  + +   ++      +L     +  L L  ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
               +    + LS++ +L LR   L     + L        M     R +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 6/232 (2%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDNNN 63
           + +LDLS N  +  +       C +L+ L L ++     +  + + +L  L  L L +N+
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNH 85

Query: 64  FSGKMTDGLLSSTLLEVLNVSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIPVQ-LG 121
            S   +      + L+ LN+  N      +     N + L  L +        I      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 122 NLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            L  L  ++I   SL      SL ++  + H+ LH +    L+ I     S++  L+LRD
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
             L       +        +                +L KL    L  + + 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 26/255 (10%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNN--------FYGQLFPNYMNLTH 53
           ++++  L L  +  +  L         S+  L+L + N               + M    
Sbjct: 171 IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 54  LRSLLLDNNNFSG--KMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG--------LW 103
            R  +L + +F+   K+   +L  + +E  + + N L    P      S         + 
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 104 VLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGL 162
            L + + YL   +      L  ++ I +  + +         +L S+E + L  N +   
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 163 I---PIALLRSSTLLTLDLRDNKL--FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ 217
                       +L TL L  N L    +    +  L NL  L +  N     +P+    
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 218 LRKLGIMDLSHNRLN 232
             K+  ++LS   + 
Sbjct: 409 PEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 2e-14
 Identities = 33/210 (15%), Positives = 81/210 (38%), Gaps = 6/210 (2%)

Query: 27  CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86
           C +    D  + +F   +         ++SL L  N  +      L +   L+VL + ++
Sbjct: 4   CDASGVCDGRSRSFT-SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 87  KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS--LS 144
           +++        +   L  L +S+N+L        G L  L+++++  N      V+    
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 145 NLSSVEHIYL-HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR 203
           NL++++ + + +    + +  I     ++L  L+++   L       +  + ++H L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 204 GNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233
            +     +      L  +  ++L    L  
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 16/226 (7%)

Query: 13  NNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGL 72
                 L+   F+    L    L  +         + + T       + +        G 
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 73  LSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDIS 132
           + +  +  L++    L  D+         +  + +  + +         +L  LEF+D+S
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 133 ENSLS----GSMVSLSNLSSVEHIYLHNNAINGL--IPIALLRSSTLLTLDLRDNKLFGR 186
           EN +      +        S++ + L  N +  +      LL    L +LD+  N     
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HP 401

Query: 187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           +P        + FL L    ++  +    C  + L ++D+S+N L+
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 7e-14
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 19/190 (10%)

Query: 1   EMKELITLDLSRNNFSGELSRP--IFSGCPSLETLDLSNNNF-----YGQLFPNYMNLTH 53
            +K L  LDLS N    E  +        PSL+TL LS N+       G++    + L +
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL---LTLKN 388

Query: 54  LRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ 113
           L SL +  N F   M D       +  LN+S+  +   +         L VL +S N L 
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD 444

Query: 114 GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
            S  + L  L   + + IS N L  ++   S    +  + +  N +  +      R ++L
Sbjct: 445 -SFSLFLPRL---QELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 174 LTLDLRDNKL 183
             + L  N  
Sbjct: 500 QKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 14/224 (6%)

Query: 14  NFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLL 73
            +  ELS   F  C      D + +          +    +R L +        ++    
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 74  SSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ---LGNLVCLEFID 130
               ++ + V N+K+      +  +   L  L +SEN +           G    L+ + 
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 131 ISEN---SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRI 187
           +S+N   S+  +   L  L ++  + +  N  +  +P +      +  L+L    +   +
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGI-RVV 425

Query: 188 PHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
              I     L  L +  N L       L +L++L    +S N+L
Sbjct: 426 KTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKL 463

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 1e-18
 Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  L L RN+ S  L R IF   P L TL +SNNN        +   T L++L L +
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +  +   L+ S  L   NVS N LS      +     +  L  S N +     V+  
Sbjct: 175 NRLT-HVDLSLIPS--LFHANVSYNLLST-----LAIPIAVEELDASHNSINV---VRGP 223

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
             V L  + +  N+L+     L N   +  + L  N +  ++    ++   L  L + +N
Sbjct: 224 VNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           +L   +      +  L  L L  N+L   +     Q  +L  + L HN +
Sbjct: 283 RL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 28/249 (11%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
            +++  L+L+      E+    F+   +++ L +  N         + N+  L  L+L+ 
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N+ S        ++  L  L++SNN L           + L  L +S N L     V L 
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLS 183

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAI------------------NGLI 163
            +  L   ++S N LS    +L+   +VE +   +N+I                  N L 
Sbjct: 184 LIPSLFHANVSYNLLS----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT 239

Query: 164 PIALLRS-STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLG 222
             A L +   L+ +DL  N+L   + H   ++  L  L +  N L   +      +  L 
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298

Query: 223 IMDLSHNRL 231
           ++DLSHN L
Sbjct: 299 VLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.2 bits (193), Expect = 6e-17
 Identities = 53/232 (22%), Positives = 83/232 (35%), Gaps = 20/232 (8%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             +L TL +S NN    +    F    SL+ L LS+N            +  L    +  
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL--THVDLS-LIPSLFHANVSY 195

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  S      L     +E L+ S+N ++  +         L +L +  N L       L 
Sbjct: 196 NLLST-----LAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LL 245

Query: 122 NLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
           N   L  +D+S N L          +  +E +Y+ NN +   + +      TL  LDL  
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           N L   +     +   L  L L  N +     +    L+ L    LSHN  +
Sbjct: 305 NHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 5e-16
 Identities = 46/230 (20%), Positives = 78/230 (33%), Gaps = 13/230 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +     +    +    +L   +      +E L+L++          +     ++ L +  
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N           +  LL VL +  N LS        N   L  L MS N L+        
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
               L+ + +S N L  + V LS + S+ H  +  N ++ L     +       LD   N
Sbjct: 163 ATTSLQNLQLSSNRL--THVDLSLIPSLFHANVSYNLLSTLAIPIAVE-----ELDASHN 215

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
            +   +   +     L  L L+ N L       L     L  +DLS+N L
Sbjct: 216 SI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 260

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 12/187 (6%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           +  LD S N+ +  +  P+      L  L L +NN         +N   L  + L  N  
Sbjct: 207 VEELDASHNSIN-VVRGPVNV---ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNEL 260

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
              M    +    LE L +SNN+L   +  +      L VL +S N+L   +        
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 125 CLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLF 184
            LE + +  NS+    + LS   +++++ L +N  +     AL R+  +    + D    
Sbjct: 319 RLENLYLDHNSIV--TLKLSTHHTLKNLTLSHNDWDCNSLRALFRN--VARPAVDDADQH 374

Query: 185 GRIPHQI 191
            +I +Q+
Sbjct: 375 CKIDYQL 381

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 9/205 (4%)

Query: 29  SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKL 88
               + +             + L + + +   N+         L S   +E+LN+++ ++
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 89  SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLS 147
                +       +  L M  N ++   P    N+  L  + +  N LS        N  
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141

Query: 148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYL 207
            +  + + NN +  +       +++L  L L  N+L   +   ++ + +L    +  N L
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLL 198

Query: 208 QGRIPNQLCQLRKLGIMDLSHNRLN 232
                  L     +  +D SHN +N
Sbjct: 199 S-----TLAIPIAVEELDASHNSIN 218

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 5/228 (2%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDNN 62
               L+L  N     +    F     LE L LS N+    +    +  L +L +L L +N
Sbjct: 65  NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDN 122

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ-LG 121
             +       +  + L+ L + NN +     +       L  L + E      I      
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
            L  L +++++  +L   + +L+ L  ++ + L  N ++ + P +      L  L +  +
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229
           ++     +  + L +L  + L  N L     +    L  L  + L HN
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 15/211 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLL 59
           ++ L  L LSRN+    +    F+G  +L TL+L +N       PN     L+ L+ L L
Sbjct: 87  LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWL 143

Query: 60  DNNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQGS 115
            NN     +     +    L  L++   K    I    G F G   L  L ++   L+  
Sbjct: 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLR-E 199

Query: 116 IPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLL 174
           IP  L  L+ L+ +D+S N LS     S   L  ++ +++  + I  +   A     +L+
Sbjct: 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 175 TLDLRDNKLFGRIPHQINELSNLHFLLLRGN 205
            ++L  N L          L +L  + L  N
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 32/208 (15%)

Query: 28  PSLETLDLSNNNF---YGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84
            +   L+L  N         F +   L HL  L L  N+              L  L + 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKH---LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 85  NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS 144
           +N+L+          S L  L +  N ++ SIP                        + +
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSY----------------------AFN 157

Query: 145 NLSSVEHIYL-HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR 203
            + S+  + L     ++ +   A    S L  L+L    L   IP+ +  L  L  L L 
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLS 215

Query: 204 GNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           GN+L    P     L  L  + +  +++
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 4/136 (2%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  LDL        +S   F G  +L  L+L+  N   +  PN   L  L  L L  
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSG 216

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ-L 120
           N+ S            L+ L +  +++     +   N   L  + ++ N L   +P    
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275

Query: 121 GNLVCLEFIDISENSL 136
             L  LE I +  N  
Sbjct: 276 TPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVS 142
               L  ++P  I   +   +L + EN +Q        +L  LE + +S N +    + +
Sbjct: 51  VRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107

Query: 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFL- 200
            + L+++  + L +N +  +   A +  S L  L LR+N +   IP    N + +L  L 
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLD 166

Query: 201 LLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           L     L          L  L  ++L+   L 
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.1 bits (200), Expect = 1e-17
 Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  L L RN+ S  L R IF   P L TL +SNNN        +   T L++L L +
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +  +   L+ S  L   NVS N LS      +     +  L  S N +     V+  
Sbjct: 181 NRLT-HVDLSLIPS--LFHANVSYNLLS-----TLAIPIAVEELDASHNSINV---VRGP 229

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
             V L  + +  N+L+     L N   +  + L  N +  ++    ++   L  L + +N
Sbjct: 230 VNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           +L   +      +  L  L L  N+L   +     Q  +L  + L HN +
Sbjct: 289 RL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 77.7 bits (191), Expect = 2e-16
 Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 28/249 (11%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
            +++  L+L+      E+    F+   +++ L +  N         + N+  L  L+L+ 
Sbjct: 74  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N+ S        ++  L  L++SNN L           + L  L +S N L     V L 
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLS 189

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAI------------------NGLI 163
            +  L   ++S N LS    +L+   +VE +   +N+I                  N L 
Sbjct: 190 LIPSLFHANVSYNLLS----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT 245

Query: 164 PIALLRS-STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLG 222
             A L +   L+ +DL  N+L   + H   ++  L  L +  N L   +      +  L 
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 304

Query: 223 IMDLSHNRL 231
           ++DLSHN L
Sbjct: 305 VLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.7 bits (178), Expect = 7e-15
 Identities = 46/230 (20%), Positives = 78/230 (33%), Gaps = 13/230 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +     +    +    +L   +      +E L+L++          +     ++ L +  
Sbjct: 50  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N           +  LL VL +  N LS        N   L  L MS N L+        
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
               L+ + +S N L  + V LS + S+ H  +  N ++ L     +       LD   N
Sbjct: 169 ATTSLQNLQLSSNRL--THVDLSLIPSLFHANVSYNLLSTLAIPIAVE-----ELDASHN 221

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
            +   +   +     L  L L+ N L       L     L  +DLS+N L
Sbjct: 222 SI-NVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 266

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 7e-08
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 3/164 (1%)

Query: 70  DGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFI 129
             L    +   +++                +   ++    + ++      L +   +E +
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 130 DISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIP 188
           ++++  +      + +   +++ +Y+  NAI  L P        L  L L  N L   +P
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP 139

Query: 189 HQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
             I +    L  L +  N L+    +       L  + LS NRL
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 37/204 (18%), Positives = 75/204 (36%), Gaps = 19/204 (9%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           M+ L  L +S N     L+       P+L+ LDLS+N+    +  N      L +L LD+
Sbjct: 277 MQRLERLYISNNRLV-ALN-LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N+    +      +  L+ L +S+N    +    +  F  +    + +      I  QL 
Sbjct: 334 NSIV-TLKLSTHHT--LKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLE 388

Query: 122 NLVCLEFIDISENSLSGSMVSLSNL-----------SSVEHIYLHNNAINGLIPIALLRS 170
           + +C +  D          ++L+++           S+ + I    +  + +     +  
Sbjct: 389 HGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPL 448

Query: 171 STLLTLDLRDNKLFGRIPHQINEL 194
                L+   N+L   +    NE 
Sbjct: 449 QGNEQLEAEVNELRAEVQQLTNEQ 472

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 48/209 (22%), Positives = 75/209 (35%), Gaps = 13/209 (6%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNF---YGQLFPNYMNLTHLRSLLLD 60
               + L  N  S  +    F  C +L  L L +N         F     L  L  L L 
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAF---TGLALLEQLDLS 88

Query: 61  NNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
           +N     +          L  L++    L    P      + L  L + +N LQ ++P  
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 120 -LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD 177
              +L  L  + +  N +S     +   L S++ + LH N +  + P A      L+TL 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 178 LRDNKLFGRIPHQI-NELSNLHFLLLRGN 205
           L  N L   +P +    L  L +L L  N
Sbjct: 208 LFANNL-SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 4/205 (1%)

Query: 28  PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK 87
            + + + L  N        ++    +L  L L +N  +           LLE L++S+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 88  LSGDIP-HWIGNFSGLWVLLMSENYLQGSIPVQ-LGNLVCLEFIDISENSLSG-SMVSLS 144
               +          L  L +    LQ  +       L  L+++ + +N+L      +  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG 204
           +L ++ H++LH N I+ +   A     +L  L L  N++    PH   +L  L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 205 NYLQGRIPNQLCQLRKLGIMDLSHN 229
           N L       L  LR L  + L+ N
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 7/160 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLL 59
           +  L  LDLS N     +    F G   L TL L       Q     +   L  L+ L L
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYL 136

Query: 60  DNNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
            +N     + D        L  L +  N++S            L  LL+ +N +    P 
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 119 QLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNN 157
              +L  L  + +  N+LS     +L+ L +++++ L++N
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 4/183 (2%)

Query: 52  THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENY 111
              + + L  N  S        +   L +L + +N L+          + L  L +S+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 112 LQGSIPVQ-LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLR 169
              S+       L  L  + +    L          L++++++YL +NA+  L       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 170 SSTLLTLDLRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH 228
              L  L L  N++   +P +    L +L  LLL  N +    P+    L +L  + L  
Sbjct: 152 LGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 229 NRL 231
           N L
Sbjct: 211 NNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 9/152 (5%)

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVS 142
               L   +P  I   +    + +  N +             L  + +  N L+     +
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT-LDLRDNKLFGRIPHQI-NELSNLHFL 200
            + L+ +E + L +NA    +  A       L  L L    L   +   +   L+ L +L
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134

Query: 201 LLRGNYLQGRIPNQLCQ-LRKLGIMDLSHNRL 231
            L+ N LQ  +P+   + L  L  + L  NR+
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 6e-17
 Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 14/200 (7%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           E+  +  +  + ++     S       P++  L L+ N           NL +L  L LD
Sbjct: 41  ELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFLD 95

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N         L     L+ L++ +N +S DI   + +   L  L +  N +       L
Sbjct: 96  ENKIK--DLSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--L 149

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  L+ + + +N +S  +V L+ L+ ++++YL  N I+ L  +A L++  L  L+L  
Sbjct: 150 SRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRALAGLKN--LDVLELFS 206

Query: 181 NKLFGRIPHQINELSNLHFL 200
            +   +  +  + L   + +
Sbjct: 207 QECLNKPINHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 1e-14
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 15/227 (6%)

Query: 24  FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83
                     +L   +           L  +  ++ +N++       G+     +  L +
Sbjct: 17  DDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFL 72

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL 143
           + NKL+ DI   + N   L  L + EN ++  +   L +L  L+ + +  N +S  +  L
Sbjct: 73  NGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DINGL 127

Query: 144 SNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR 203
            +L  +E +YL NN I  +  ++ L    L TL L DN++   I   +  L+ L  L L 
Sbjct: 128 VHLPQLESLYLGNNKITDITVLSRLTK--LDTLSLEDNQI-SDIV-PLAGLTKLQNLYLS 183

Query: 204 GNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVID 250
            N++       L  L+ L +++L          +   N+     V +
Sbjct: 184 KNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.5 bits (172), Expect = 5e-14
 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 14/207 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  +  L L+ N  +        +   +L  L L  N    +   +  +L  L+SL L++
Sbjct: 64  LPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEH 118

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  S    +GL+    LE L + NNK++ DI   +   + L  L + +N +   I   L 
Sbjct: 119 NGIS--DINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLA 172

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
            L  L+ + +S+N +S  + +L+ L +++ + L +                  T+   D 
Sbjct: 173 GLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQ 208
            L    P  I++  +     ++ +  +
Sbjct: 232 SLV--TPEIISDDGDYEKPNVKWHLPE 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 4e-16
 Identities = 57/252 (22%), Positives = 92/252 (36%), Gaps = 33/252 (13%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           L  L +  N  +      +    P L+ L +S+N       P     + L  L   NN  
Sbjct: 123 LCKLWIFGNQLTS-----LPVLPPGLQELSVSDNQL--ASLPA--LPSELCKLWAYNNQL 173

Query: 65  SGKMTDGLLSSTL--LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
           +       L      L+ L+VS+N+L+  +P        LW      N L  S+P     
Sbjct: 174 TS------LPMLPSGLQELSVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSG 222

Query: 123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182
           L  L    +S N L+   V  S L   + + +  N +  L P+     S LL+L +  N+
Sbjct: 223 LKEL---IVSGNRLTSLPVLPSEL---KELMVSGNRLTSL-PMLP---SGLLSLSVYRNQ 272

Query: 183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV 242
           L  R+P  +  LS+   + L GN L  R    L ++           R +    S     
Sbjct: 273 L-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

Query: 243 SSWREVIDDYSL 254
            +      D+ +
Sbjct: 332 RALHLAAADWLV 343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 4e-16
 Identities = 54/250 (21%), Positives = 87/250 (34%), Gaps = 51/250 (20%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
              EL TL++S N  +  L      G   L        +            + L  L + 
Sbjct: 79  LPPELRTLEVSGNQLT-SLPVLP-PGLLELSIFSNPLTHLPAL-------PSGLCKLWIF 129

Query: 61  NNNFSGKMTDGLLSSTL--LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
            N  +       L      L+ L+VS+N+L+  +P        L  L    N L  S+P+
Sbjct: 130 GNQLTS------LPVLPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPM 178

Query: 119 QLGNLVCLEFIDISENSLS------GSMVSL-----------SNLSSVEHIYLHNNAING 161
               L  L    +S+N L+        +  L           +  S ++ + +  N +  
Sbjct: 179 LPSGLQEL---SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS 235

Query: 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL 221
           L P+     S L  L +  N+L   +P      S L  L +  N L  R+P  L  L   
Sbjct: 236 L-PVLP---SELKELMVSGNRL-TSLP---MLPSGLLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 222 GIMDLSHNRL 231
             ++L  N L
Sbjct: 287 TTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 59/229 (25%)

Query: 27  CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86
                 L++  +            LT L   L  +                +  L + +N
Sbjct: 39  NNGNAVLNVGESG-----------LTTLPDCLPAH----------------ITTLVIPDN 71

Query: 87  KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNL 146
            L+  +P        L  L +S N L  S+PV    L+ L         L      L  L
Sbjct: 72  NLT-SLPALPPE---LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

Query: 147 --------------SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 192
                           ++ + + +N +  L P      S L  L   +N+L   +P    
Sbjct: 127 WIFGNQLTSLPVLPPGLQELSVSDNQLASL-PALP---SELCKLWAYNNQL-TSLP---M 178

Query: 193 ELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
             S L  L +  N L   +P    +L KL      +NRL   +P+    
Sbjct: 179 LPSGLQELSVSDNQLA-SLPTLPSELYKL---WAYNNRLT-SLPALPSG 222

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.2 bits (187), Expect = 5e-16
 Identities = 50/253 (19%), Positives = 83/253 (32%), Gaps = 32/253 (12%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
            +     L   N +  +S            L L+  N      P+ +    +  L +  N
Sbjct: 34  DKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL--SSLPDNL-PPQITVLEITQN 90

Query: 63  NFSGKMTDGLLSSTL--LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
                     L      LE L+  +N+LS  +P    +   L V     N L   +P   
Sbjct: 91  ALIS------LPELPASLEYLDACDNRLS-TLPELPASLKHLDV---DNNQLT-MLPELP 139

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
                LE+I+   N L+      ++L   E + + NN +  L P       +L  LD+  
Sbjct: 140 AL---LEYINADNNQLTMLPELPTSL---EVLSVRNNQLTFL-PELP---ESLEALDVST 189

Query: 181 NKLFGRIPHQINELSNL----HFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236
           N L   +P       +      F   R N +   IP  +  L     + L  N L+  I 
Sbjct: 190 NLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

Query: 237 SCLGNVSSWREVI 249
             L   ++  +  
Sbjct: 248 ESLSQQTAQPDYH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 2e-15
 Identities = 48/254 (18%), Positives = 83/254 (32%), Gaps = 27/254 (10%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           + +   L L+R N S  L   +    P +  L+++ N       P       L  L   +
Sbjct: 58  INQFSELQLNRLNLS-SLPDNLP---PQITVLEITQNAL--ISLPE--LPASLEYLDACD 109

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  S  + +   S   L+ L+V NN+L+  +P        L  +    N L   +P    
Sbjct: 110 NRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPT 160

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL---IPIALLRSSTLLTLDL 178
           +L  L    +  N L+       +L   E + +  N +  L            T +    
Sbjct: 161 SLEVL---SVRNNQLTFLPELPESL---EALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSC 238
           R+N++   IP  I  L     ++L  N L  RI   L Q              +      
Sbjct: 215 RENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 239 LGNVSSWREVIDDY 252
                   + +  +
Sbjct: 274 NTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 7e-15
 Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 34/236 (14%)

Query: 27  CPSLETLDLSNNNFYGQL-------FPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLE 79
            P      LS N+FY  +       F  +           + N     + + L++     
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FS 62

Query: 80  VLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS 139
            L ++   LS  +P  +     + VL +++N L  S+P    +L  L   D  +N LS  
Sbjct: 63  ELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-- 113

Query: 140 MVSL-SNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH 198
             +L    +S++H+ + NN +  L P      + L  ++  +N+L   +P      ++L 
Sbjct: 114 --TLPELPASLKHLDVDNNQLTML-PELP---ALLEYINADNNQL-TMLPELP---TSLE 163

Query: 199 FLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL 254
            L +R N L   +P     L  L   D+S N L   +P+         E    +  
Sbjct: 164 VLSVRNNQLT-FLPELPESLEAL---DVSTNLLES-LPAVPVRNHHSEETEIFFRC 214

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 52/245 (21%), Positives = 92/245 (37%), Gaps = 21/245 (8%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLLDN 61
            + +LDLS N  +  +S      C +L+ L L++N             +L  L  L L  
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSY 109

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQGSIPV 118
           N  S   +      + L  LN+  N     +      FS    L +L +        I  
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE-TSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 119 Q-LGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176
           +    L  LE ++I  + L      SL ++ +V H+ LH      L+ I +  +S++  L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 177 DLRDNKLFGRIPHQI--------NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH 228
           +LRD  L      ++         +      + +    L  ++   L Q+  L  ++ S 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 229 NRLNG 233
           N+L  
Sbjct: 287 NQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 9/188 (4%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDNNN 63
           L  L+L  N +       +FS    L+ L + N + + ++    +  LT L  L +D ++
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 64  FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL--- 120
                   L S   +  L +   +    +  ++   S +  L + +  L      +L   
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 121 -----GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT 175
                        + I++ SL   M  L+ +S +  +    N +  +      R ++L  
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 176 LDLRDNKL 183
           + L  N  
Sbjct: 306 IWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 40/216 (18%), Positives = 82/216 (37%), Gaps = 13/216 (6%)

Query: 28  PSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86
            ++++LDLSNN     +  +      +L++L+L +N  +    D   S   LE L++S N
Sbjct: 52  EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 87  KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL-GNLVCLEFIDISENSLSGSMVS--L 143
            LS     W    S L  L +  N  +      L  +L  L+ + +        +     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 144 SNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR 203
           + L+ +E + +  + +    P +L     +  L L   +    +   ++  S++  L LR
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 204 GNYLQGRIPNQLC--------QLRKLGIMDLSHNRL 231
              L     ++L         +      + ++   L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 97  GNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLH 155
           G    +  L +S N +       L   V L+ + ++ N ++     S S+L S+EH+ L 
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 156 NNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI--NELSNLHFLLLRGNYLQGRIPN 213
            N ++ L        S+L  L+L  N     +      + L+ L  L +       +I  
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 214 Q-LCQLRKLGIMDLSHNRL 231
           +    L  L  +++  + L
Sbjct: 168 KDFAGLTFLEELEIDASDL 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 16/208 (7%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           ++  + TL       +   +        +L  L+L +N           NLT +  L L 
Sbjct: 39  DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELS 93

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N    K    +     ++ L++++ +++   P  +   S L VL +  N +    P  L
Sbjct: 94  GNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--L 147

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  L+++ I    +S  +  L+NLS +  +   +N I+ + P+A L +  L+ + L++
Sbjct: 148 AGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKISDISPLASLPN--LIEVHLKN 204

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQ 208
           N++    P  +   SNL  + L    + 
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 18/244 (7%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            +   I +   ++N +  ++    +    + TL                 L +L  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           +N  +      L + T +  L +S N L       I     +  L ++   +    P  L
Sbjct: 72  DNQIT--DLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
             L  L+ + +  N ++ ++  L+ L++++++ + N  ++ L P+A L    L TL   D
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLANLSK--LTTLKADD 182

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           NK+    P  +  L NL  + L+ N +    P  L     L I+ L++  +         
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 241 NVSS 244
           N+  
Sbjct: 239 NLVV 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 40/197 (20%), Positives = 84/197 (42%), Gaps = 14/197 (7%)

Query: 35  LSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPH 94
           ++       +FP+   L +   +    +N +  +T   L    +  L+     ++  I  
Sbjct: 3   ITQPTAINVIFPDP-ALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEG 58

Query: 95  WIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYL 154
            +   + L  L + +N +    P  L NL  +  +++S N L  ++ +++ L S++ + L
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDL 114

Query: 155 HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQ 214
            +  I  + P+A L +  L  L L  N++    P  +  L+NL +L +    +    P  
Sbjct: 115 TSTQITDVTPLAGLSN--LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168

Query: 215 LCQLRKLGIMDLSHNRL 231
           L  L KL  +    N++
Sbjct: 169 LANLSKLTTLKADDNKI 185

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 10/181 (5%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
           K  +   L ++      +    +   SL  + L+N N             +++ L ++N 
Sbjct: 23  KAYLNGLLGQS----STANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
           + +    + +   + LE L +    ++ D    +   + L +L +S +    SI  ++  
Sbjct: 77  HATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182
           L  +  ID+S N     ++ L  L  ++ + +  + ++    I       L  L      
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF--PKLNQLYAFSQT 192

Query: 183 L 183
           +
Sbjct: 193 I 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 8e-13
 Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +M  L  + L+  N +            +++ L ++N +     +     L++L  L + 
Sbjct: 42  QMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
             + +      L   T L +L++S++     I   I     +  + +S N     I   L
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-L 155

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL 162
             L  L+ ++I  + +      + +   +  +Y  +  I G 
Sbjct: 156 KTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 2/113 (1%)

Query: 120 LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
           +     ++ + I+    + +   +S LS++E + +    +       L   ++L  LD+ 
Sbjct: 62  IEYAHNIKDLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
            +     I  +IN L  ++ + L  N     I   L  L +L  +++  + ++
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 134 NSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 193
              S + ++ + ++S+ +I L N  +  L  I    +  +  L + +       P  I+ 
Sbjct: 31  GQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN--IKDLTINNIHATNYNP--ISG 86

Query: 194 LSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
           LSNL  L + G  +       L  L  L ++D+SH+  +  I + +  
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 5e-13
 Identities = 49/249 (19%), Positives = 86/249 (34%), Gaps = 21/249 (8%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN---YMNLTHLRSLLL 59
           + L  L    +  +            SL+ L +       ++       + ++ L+ L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 60  DNNNFSGKMTDGLLSSTL--LEVLNVSNNKLSGDIPHWIGNFS----GLWVLLMSENYLQ 113
           +N   +G     LL +T   L +LN+ N   +               GL VL +++ +  
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 114 GSIPVQLGNLVCLEFIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGL---IPI 165
                Q+     L  +D+S+N   G     S +      +++ + L N  +         
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 166 ALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM 224
                  L  LDL  N L         +  S L+ L L    L+        +L  L   
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL--- 279

Query: 225 DLSHNRLNG 233
           DLS+NRL+ 
Sbjct: 280 DLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 24/245 (9%)

Query: 8   LDLSRNNFSGELSRPI--FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
           L +        +        G   L+ L L N    G   P  +  T     +L+  N S
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 66  GKMTDGLLSS------TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI--- 116
               D  L+         L+VL+++           +  F  L  L +S+N   G     
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 117 ----PVQLGNLVCLEFIDISENSLSGSMVSL-SNLSSVEHIYLHNNAINGLIP-IALLRS 170
               P++   L  L   +    + SG   +L +    ++ + L +N++       +    
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQG-RIPNQLCQLRKLGIMDLSHN 229
           S L +L+L    L  ++P  +   + L  L L  N L     P++L Q+  L    L  N
Sbjct: 253 SQLNSLNLSFTGL-KQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNL---SLKGN 306

Query: 230 RLNGP 234
                
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 15/193 (7%)

Query: 2   MKELITLDLSRNNFSG---ELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLL 58
             +L  L+L   +++     L+       P L+ L ++  +              L +L 
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179

Query: 59  LDNNNFSGKM----TDGLLSSTLLEVLNVSNNK---LSGDIPHWIGNFSGLWVLLMSENY 111
           L +N   G+         L    L+VL + N      SG           L  L +S N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 112 LQGSIPVQL-GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRS 170
           L+ +           L  +++S   L    V     + +  + L  N ++       L  
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGLPAKLSVLDLSYNRLDRNPSPDELPQ 297

Query: 171 STLLTLDLRDNKL 183
             +  L L+ N  
Sbjct: 298 --VGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 37/198 (18%), Positives = 63/198 (31%), Gaps = 17/198 (8%)

Query: 57  LLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHW---IGNFSGLWVLLMSENYLQ 113
           L   +          ++ S  L+ L V   ++   I      +   SGL  L +    + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 114 GSIPVQLGNLVC--LEFIDISENSLSGSMVSLSNLS-----SVEHIYLHNNAINGLIPIA 166
           G+ P  L       L  +++   S +     L+ L       ++ + +            
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 167 LLRSSTLLTLDLRDNKLFGRIPHQI----NELSNLHFLLLRGNYLQ---GRIPNQLCQLR 219
           +     L TLDL DN   G           +   L  L LR   ++   G          
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 220 KLGIMDLSHNRLNGPIPS 237
           +L  +DLSHN L     +
Sbjct: 229 QLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             +L  LDLS N+       P       L +L+LS      Q+         L  L L  
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSY 283

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSG 90
           N      +   L    +  L++  N    
Sbjct: 284 NRLDRNPSPDELPQ--VGNLSLKGNPFLD 310

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 46/261 (17%), Positives = 81/261 (31%), Gaps = 36/261 (13%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNN--------FYGQLFPN--YMNL 51
           +  L  L L  NN         F        LDL+ N                +   + L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 52  THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENY 111
           + +    ++      +       +T +  L++S N     +      F         ++ 
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA---KRFFDAIAGTKIQSL 244

Query: 112 LQGSIPVQLGNLVCLEFIDISENSLSG------SMVSLSN-------------LSSVEHI 152
           +  +      +     F D    +  G          LS               + +E +
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304

Query: 153 YLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRI 211
            L  N IN +   A    + LL L+L  N L G I  ++   L  L  L L  N+++  +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-AL 362

Query: 212 PNQLCQ-LRKLGIMDLSHNRL 231
            +Q    L  L  + L  N+L
Sbjct: 363 GDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 55/284 (19%), Positives = 91/284 (32%), Gaps = 55/284 (19%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY---GQLFPNYMNLTHL---- 54
           +++L  L + +      +    F G  SL  L L  N F       F    NL  L    
Sbjct: 53  LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112

Query: 55  -------------------RSLLLDNNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPH 94
                                L+L +NN           +     VL+++ NK+      
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172

Query: 95  WIGNFSGLWVLL----------MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV--- 141
            + NF G    L          M+E +L             +  +D+S N    SM    
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 142 -SLSNLSSVEHIYLHN--NAINGLIPIAL----------LRSSTLLTLDLRDNKLFGRIP 188
                 + ++ + L N  N  +                 L +S + T DL  +K+F  + 
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALL 291

Query: 189 HQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
             + +  ++L  L L  N +     N    L  L  ++LS N L
Sbjct: 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 44/248 (17%), Positives = 86/248 (34%), Gaps = 27/248 (10%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDNNNFS 65
            +DLS N+ + EL+   FS    L+ L +        +  N +  L+ L  L LD N F 
Sbjct: 34  YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 66  GKMTDGLLSS-TLLEVLNVSNNKL-SGDIPHWIGNFSGLW---VLLMSENYLQGSIPVQL 120
            ++  G  +    LEVL ++   L    +      F  L    +L++ +N ++   P   
Sbjct: 93  -QLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 121 -GNLVCLEFIDISEN-----------SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALL 168
             N+     +D++ N           +  G   +L  LSS+    ++   +         
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 169 RSSTLLTLDLRDNKLFGRIPHQINELSNLHFLL-----LRGNYLQGRIPNQLCQLRKLGI 223
           +++++ TLDL  N     +  +  +      +         N                  
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 224 MDLSHNRL 231
             L  + +
Sbjct: 270 KGLEASGV 277

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 44/256 (17%), Positives = 85/256 (33%), Gaps = 31/256 (12%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLE----------TLDLSNNNFYGQLFPNYMNL 51
           M+    LDL+ N     +                        D++      +   N    
Sbjct: 153 MRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 52  THLRSLLLDNNNFSGKMT---DGLLSSTLLEVLNVSNNKLSG------------DIPHWI 96
           T + +L L  N F   M       ++ T ++ L +SN+   G            +     
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 97  GNFSGLWVLLMSENYLQGSIPVQL-GNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYL 154
              SG+    +S++ +  ++   +  +   LE + +++N ++     +   L+ +  + L
Sbjct: 272 LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 155 HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPN 213
             N +  +          L  LDL  N +   +  Q    L NL  L L  N L+     
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDG 389

Query: 214 QLCQLRKLGIMDLSHN 229
              +L  L  + L  N
Sbjct: 390 IFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFLLLRGN 205
           + V ++ L  N+I  L   +  R   L  L +        I +     LS+L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 206 YLQGRIPNQLCQLRKLGIMDLSHNRLNGPI 235
                       L  L ++ L+   L+G +
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAV 119

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 51/250 (20%), Positives = 82/250 (32%), Gaps = 37/250 (14%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           L  L +S N        P       L+ +D+ NN+   +  P+      L  +   NN  
Sbjct: 133 LEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSL--KKLPD--LPPSLEFIAAGNNQL 185

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
                  L +   L  +   NN L   +P    +   L  ++   N L      +L NL 
Sbjct: 186 EE--LPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNIL--EELPELQNLP 237

Query: 125 CLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLF 184
            L  I    N L        +L   E + + +N +  L P      + L   +   + L 
Sbjct: 238 FLTTIYADNNLLKTLPDLPPSL---EALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLS 293

Query: 185 GRIPH---------QINEL----SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
              P+         +I  L     +L  L +  N L   +P    +L +L     S N L
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHL 349

Query: 232 NGPIPSCLGN 241
              +P    N
Sbjct: 350 AE-VPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 33/241 (13%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
               L       +N + E+     +   S      + + +     P       +    L 
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           +                   L ++N  LS  +P    +   L  L+ S N L   +P   
Sbjct: 67  DCLDRQ-----------AHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELP 110

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            +L  L   + +  +LS           +E++ + NN +  L  +       L  +D+ +
Sbjct: 111 QSLKSLLVDNNNLKALS------DLPPLLEYLGVSNNQLEKLPELQNSSF--LKIIDVDN 162

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N L  ++P   +   +L F+    N L+  +P  L  L  L  +   +N L   +P    
Sbjct: 163 NSL-KKLP---DLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKK-LPDLPL 215

Query: 241 N 241
           +
Sbjct: 216 S 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 52/284 (18%), Positives = 86/284 (30%), Gaps = 53/284 (18%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  +    N+        +     SLE++   NN    +  P   NL  L ++  DN
Sbjct: 194 LPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADN 246

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N         L  S  LE LNV +N L+ D+P    +   L  L +SEN     +     
Sbjct: 247 NLLK--TLPDLPPS--LEALNVRDNYLT-DLPELPQS---LTFLDVSENIFS-GLSELPP 297

Query: 122 NLVCLEFIDISENSLSGSMVSL--------------SNLSSVEHIYLHNNAINGLIPIAL 167
           NL  L        SL     SL              +    +E +    N +  +  +  
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPEL-- 355

Query: 168 LRSSTLLTLDLRDNKL---------------FGRIPHQINELSNLHFLLLRGNYLQGRIP 212
                L  L +  N L                  +        NL  L +  N L+   P
Sbjct: 356 --PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFP 412

Query: 213 NQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS 256
           +    +  L    ++  R+  P            + + ++    
Sbjct: 413 DIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 29/198 (14%)

Query: 46  PNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVL 105
           P  ++ T L+  L  ++N + +M     +         + ++   + P   G    + V 
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 106 LMSENYLQG------------SIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIY 153
            + +   +             S+P    +L  L     S NSL+       +L S+    
Sbjct: 64  RLRDCLDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELPQSLKSLLVDN 120

Query: 154 LHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPN 213
            +  A++ L P        L  L + +N+L  ++P ++   S L  + +  N L+ ++P+
Sbjct: 121 NNLKALSDLPP-------LLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNSLK-KLPD 170

Query: 214 QLCQLRKLGIMDLSHNRL 231
               L  +      +N+L
Sbjct: 171 LPPSLEFI---AAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 35/220 (15%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
               L  L++  N  +      +     SL  LD+S N F            +L  L   
Sbjct: 255 LPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSENIF--SGLSEL--PPNLYYLNAS 305

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           +N     + D   S   LE LNVSNNKL  ++P        L  L+ S N+L   +P   
Sbjct: 306 SNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELP 356

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNL-------------SSVEHIYLHNNAINGLIPIAL 167
            NL  L               S+ +L              +++ +++  N +    P   
Sbjct: 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-PDIP 415

Query: 168 LRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYL 207
               ++  L +   ++             L   +   ++ 
Sbjct: 416 ---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 16/208 (7%)

Query: 8   LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN--YMNLTHLRSLLLDNNNFS 65
           LDLS N     L    F   P L+ LDLS      Q   +  Y +L+HL +L+L  N   
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 66  GKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ--LGNL 123
                     + L+ L      L+      IG+   L  L ++ N +Q S  +     NL
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNL 148

Query: 124 VCLEFIDISENSLS----GSMVSLSNLSSVE-HIYLHNNAINGLIPIALLRSSTLLTLDL 178
             LE +D+S N +       +  L  +  +   + L  N +N  I     +   L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELAL 207

Query: 179 RDNKLFGRIPHQI-NELSNLHFLLLRGN 205
             N+L   +P  I + L++L  + L  N
Sbjct: 208 DTNQL-KSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 18/166 (10%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLLD 60
             L TL L+ N     L+   FSG  SL+ L     N       N+   +L  L+ L + 
Sbjct: 76  SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVA 132

Query: 61  NNNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGL-------WVLLMSENYL 112
           +N           S+ T LE L++S+NK+   I     +   L         L +S N +
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSLDLSLNPM 189

Query: 113 QGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNN 157
              I       + L+ + +  N L          L+S++ I+LH N
Sbjct: 190 N-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 25/217 (11%)

Query: 28  PSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLDNNNFSGKMTDGLLSS-TLLEVLNVSN 85
            S + LDLS N     L      +   L+ L L        + DG   S + L  L ++ 
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 86  NKLSGDIPHWIGNFSG---LWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLS---- 137
           N +   +    G FSG   L  L+  E  L  S+    +G+L  L+ ++++ N +     
Sbjct: 86  NPIQ-SLAL--GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 138 -GSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTL----LTLDLRDNKLFGRIPHQIN 192
                +L+NL   EH+ L +N I  +    L     +    L+LDL  N +   I     
Sbjct: 142 PEYFSNLTNL---EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAF 197

Query: 193 ELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229
           +   L  L L  N L+        +L  L  + L  N
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 76  TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL-GNLVCLEFIDISEN 134
              + L++S N L     +   +F  L VL +S   +Q +I      +L  L  + ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 135 SLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-N 192
            +   ++ + S LSS++ +      +  L    +    TL  L++  N +      +  +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 193 ELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM----DLSHNRLN 232
            L+NL  L L  N +Q      L  L ++ ++    DLS N +N
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 13/236 (5%)

Query: 3   KELITLDLSRNNFSGELSRPIFSG----CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLL 58
             +    +S     G+L    F        +L    + ++ F       Y   +++    
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 59  LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
              +             +    L+ SNN L+  +    G+ + L  L++  N L+  +  
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSK 365

Query: 119 QLG---NLVCLEFIDISENSLSGSM--VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
                  +  L+ +DIS+NS+S        S   S+  + + +N +   I   L     +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--I 423

Query: 174 LTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229
             LDL  NK+   IP Q+ +L  L  L +  N L+        +L  L  + L  N
Sbjct: 424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 14/235 (5%)

Query: 8   LDLSRNNFSGELSRPIFS--GCPSLETLDLSNNNFYGQLFPNYM-----NLTHLRSLLLD 60
           L L+    +      I       ++    +SN    GQL          +L  L    + 
Sbjct: 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           ++ F    +      + + + N + +             S    L  S N L  ++    
Sbjct: 285 SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 121 GNLVCLEFIDISEN---SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRS-STLLTL 176
           G+L  LE + +  N    LS      + + S++ + +  N+++            +LL+L
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 177 DLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           ++  N L   I   +     +  L L  N ++  IP Q+ +L  L  ++++ N+L
Sbjct: 405 NMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 36/209 (17%), Positives = 79/209 (37%), Gaps = 10/209 (4%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +K L    +  + F       I+    ++   + + +            ++    L   N
Sbjct: 275 LKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQGSIPV 118
           N  +  + +     T LE L +  N+L  ++       +    L  L +S+N +      
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 119 QL-GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD 177
                   L  +++S N L+   +       ++ + LH+N I  + P  +++   L  L+
Sbjct: 393 GDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIKSI-PKQVVKLEALQELN 450

Query: 178 LRDNKLFGRIPHQI-NELSNLHFLLLRGN 205
           +  N+L   +P  I + L++L  + L  N
Sbjct: 451 VASNQL-KSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 18/250 (7%)

Query: 8   LDLSRNNFSGELSRPIFSGCPSLETLDLSNN------NFYGQLFPNYMNLTHLRSLLLDN 61
           +    N     +         +LE  ++         +++  +         L +L L+N
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 62  NNFSGKMTDGLL---SSTLLEVLNVSNNKLSGDIPHWIGNFSG-----LWVLLMSENYLQ 113
              +      +L     T +   ++SN KL G +     ++SG     L +  +  +   
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 114 GSIPVQLGNLVCLEFIDISENSL-SGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSST 172
                       +   + + +      M+  S +S   H+   NN +   +       + 
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 173 LLTLDLRDNKL--FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC-QLRKLGIMDLSHN 229
           L TL L+ N+L    +I     ++ +L  L +  N +        C   + L  +++S N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 230 RLNGPIPSCL 239
            L   I  CL
Sbjct: 410 ILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 18/245 (7%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           L  LDLS N F        F     L+ L LS  +          +L   + LL+    +
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 65  SGKMTDGLLSSTLLEVL--NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
             K     L     E L      NK    I            L   +  L+ +      +
Sbjct: 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 123 LVCLEFIDISENSLSGSMVSLS-----------NLSSVEHIYLHNNAINGLIPIALLRSS 171
           ++     +   ++L+ + +  +             ++V +  + N  + G +       S
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 172 -----TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL 226
                 L    +  +       +     SN++      +  +        ++     +D 
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 227 SHNRL 231
           S+N L
Sbjct: 332 SNNLL 336

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 34/241 (14%), Positives = 81/241 (33%), Gaps = 11/241 (4%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
            +K ++  +      S            +L   ++             +  T +    + 
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 61  NNNFSGKMTDGLLSSTL-----LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGS 115
           N    G++       +      L +  V ++       +    FS + +   + +  +  
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 116 IPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALL--RSST 172
             +    +     +D S N L+ ++     +L+ +E + L  N +  L  IA +  +  +
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 173 LLTLDLRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           L  LD+  N +         +   +L  L +  N L   I   L    ++ ++DL  N++
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI 433

Query: 232 N 232
            
Sbjct: 434 K 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 50/250 (20%), Positives = 83/250 (33%), Gaps = 23/250 (9%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN 63
           +L  L +S N     L   +F     LE LDLS+N          +NL HL    L  N 
Sbjct: 46  KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD---LSFNA 101

Query: 64  FSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP----- 117
           F          + + L+ L +S   L       I + +   VLL+               
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161

Query: 118 ------VQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRS 170
                 + +      EF  I + S+     + LSN+  V      +  ++ L  +     
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 171 STLLTLDLRD--NKLFGRIPHQINELSNLHFLL----LRGNYLQGRIPNQLCQLRKLGIM 224
            + LTL+  +     F RI   +   +  +F +    L+G             L+ L I 
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 225 DLSHNRLNGP 234
            +  +    P
Sbjct: 282 QVVSDVFGFP 291

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 39/233 (16%), Positives = 84/233 (36%), Gaps = 26/233 (11%)

Query: 6   ITLDLSRNNFSGELSRPIFSGCP-SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
             +D S+N         +          L++S N        + ++L+ LR L++ +N  
Sbjct: 3   FLVDRSKNGLIH-----VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ--LGN 122
                     +  LE L++S+NKL   I         L  L +S N    ++P+    GN
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFNAFD-ALPICKEFGN 113

Query: 123 LVCLEFIDISENSL-SGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           +  L+F+ +S   L   S++ +++L+  + + +             L+     +L     
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL----- 168

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP 234
                    I   +N  F  +    ++     +L  ++ +   +     L+  
Sbjct: 169 --------HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 39/185 (21%), Positives = 65/185 (35%), Gaps = 5/185 (2%)

Query: 75  STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN 134
           S    +LN+S N +S      I + S L +L++S N +Q            LE++D+S N
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 135 SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT-LDLRDNKLFGRIPHQINE 193
            L    +S     +++H+ L  NA + L       + + L  L L    L       I  
Sbjct: 80  KLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 194 LSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYS 253
           L+    LL+ G             L+      L            + +VS       + S
Sbjct: 138 LNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 254 LLSGF 258
            +   
Sbjct: 196 NIKCV 200

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 19/204 (9%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN--YMNLTHLRSLLLDNNNF 64
            L++S+N  S EL          L  L +S+N    Q      +     L  L L +N  
Sbjct: 25  ILNISQNYIS-ELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKL 81

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLW---VLLMSENYLQGSIPVQLG 121
                   ++   L+ L++S N     +P     F  +     L +S  +L+ S  + + 
Sbjct: 82  VKISCHPTVN---LKHLDLSFNAFD-ALPI-CKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLH-----NNAINGLIPIALLRSSTLLTL 176
           +L   + + +   +          L       LH     N   + ++ +++   + L   
Sbjct: 137 HLNISKVLLVLGETYG-EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 177 DLRDNKLFGRIPHQINELSNLHFL 200
           +++      +  + ++ L+ L   
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTN 219

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           +MK L  LD+S+N+ S +  +   S   SL +L++S+N     +F        ++ L L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLH 429

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGL 102
           +N     +   ++    L+ LNV++N+L   +P   G F  L
Sbjct: 430 SNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD--GIFDRL 467

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 15/182 (8%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +   +  +L + + +  +S         ++  +  N+N   Q        T+L+ L L +
Sbjct: 18  LANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSH 72

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  S      L   T LE L+V+ N+L  ++       + L  L +  N L+ +    L 
Sbjct: 73  NQIS--DLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRDTDS--LI 125

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           +L  LE + I  N L  S+V L  LS +E + LH N I     +  L+   +  +DL   
Sbjct: 126 HLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEITNTGGLTRLKK--VNWIDLTGQ 182

Query: 182 KL 183
           K 
Sbjct: 183 KC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 37/181 (20%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 25  SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84
            G  +    +L   +       +   L+ +++   DN+N   +   G+   T L+ L++S
Sbjct: 16  PGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLS 71

Query: 85  NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS 144
           +N++S D+   + + + L  L ++ N L+    +    L  L    +  N L     SL 
Sbjct: 72  HNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELR-DTDSLI 125

Query: 145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG 204
           +L ++E + + NN +  ++ +  L    L  LDL  N++       +  L  ++++ L G
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFLSK--LEVLDLHGNEI--TNTGGLTRLKKVNWIDLTG 181

Query: 205 N 205
            
Sbjct: 182 Q 182

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 39/224 (17%), Positives = 72/224 (32%), Gaps = 30/224 (13%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNY-MNLTHLRSLLLDNN 62
              TL L   +    +    FS  P++  + +S +    QL  +   NL+ +  + + N 
Sbjct: 32  STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 63  NFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPH--WIGNFSGLWVLLMSENYLQGSIPVQ 119
                +    L    LL+ L + N  L    P    + +    ++L +++N    SIP  
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP-- 147

Query: 120 LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
                              +   L N +    + L+NN     +       + L  + L 
Sbjct: 148 -----------------VNAFQGLCNET--LTLKLYNNGFTS-VQGYAFNGTKLDAVYLN 187

Query: 180 DNKLFGRIPHQI--NELSNLHFLLLRGNYLQGRIPNQLCQLRKL 221
            NK    I         S    L +    +       L  L++L
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 33/211 (15%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLD 60
           +  +  + +S +    +L    F     +  +++ N      + P+    L  L+ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 61  NNNFSG-KMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL----MSENYLQGS 115
           N           + S+ +  +L +++N     IP     F GL        +  N    S
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT-S 170

Query: 116 IPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT 175
           +     N   L+ + +++N           L+      +  +A  G+        S    
Sbjct: 171 VQGYAFNGTKLDAVYLNKN---------KYLTV-----IDKDAFGGV-------YSGPSL 209

Query: 176 LDLRDNKLFGRIPHQINELSNLHFLLLRGNY 206
           LD+    +   +P +   L +L  L+ R  +
Sbjct: 210 LDVSQTSV-TALPSKG--LEHLKELIARNTW 237

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 45/238 (18%), Positives = 84/238 (35%), Gaps = 13/238 (5%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGC----PSLETLDLSNNNFYGQLFPNYMNLTHLRS 56
             + +  L++     +  + R  F+       SL    + N  F       Y     +  
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 57  LLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI 116
            +L  ++          S +    LN + N  +  +         L  L++  N L+ + 
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF 392

Query: 117 PV---QLGNLVCLEFIDISENSLSGSMVSL--SNLSSVEHIYLHNNAINGLIPIALLRSS 171
                   N+  LE +D+S NSL+        +   S+  + L +N + G +   L    
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PP 450

Query: 172 TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229
            +  LDL +N++   IP  +  L  L  L +  N L+        +L  L  + L  N
Sbjct: 451 KVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 34/245 (13%), Positives = 69/245 (28%), Gaps = 16/245 (6%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
             L  LDLS N+F        F     L  L LS   F         +L     LL   +
Sbjct: 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVS 180

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
                     L      VL++  +  S        + + L  L +S   L      +L  
Sbjct: 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT 240

Query: 123 LVCLEFIDISENSLSGSMVSLS-----------NLSSVEHIYLHNNAINGLIPIALLRSS 171
            +       +  +++   +  +               VE++ ++N  I   I       S
Sbjct: 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300

Query: 172 -----TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL 226
                +L+   +++           +  + ++  +L  +                  ++ 
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

Query: 227 SHNRL 231
           + N  
Sbjct: 361 TQNVF 365

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 42/252 (16%), Positives = 81/252 (32%), Gaps = 16/252 (6%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN 63
            ++ L    N+          +    L+  ++  N+   Q    +++       LL+   
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 64  FSGKMTDGLLSSTL-------LEVLNVSNNKLSGDIPHWIGNFSG-----LWVLLMSENY 111
              + T               +E LN+ N  ++  I      +S      L +  +    
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316

Query: 112 LQGSIPVQLGNLVCLEFIDISENSL-SGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRS 170
              S          +    +S +      MV   + SS   +    N     +       
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376

Query: 171 STLLTLDLRDNKL--FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL-RKLGIMDLS 227
             L TL L+ N L  F ++      +S+L  L +  N L     ++ C     + +++LS
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 228 HNRLNGPIPSCL 239
            N L G +  CL
Sbjct: 437 SNMLTGSVFRCL 448

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 37/245 (15%), Positives = 87/245 (35%), Gaps = 17/245 (6%)

Query: 1   EMKELITLDLSRNNFSGELSR-PIFSGCPSLETLDLSNNNFYGQLF---PNYMNLTHLRS 56
              +L  + L+  N    ++     +  P+L  + L +     +       +     +  
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 57  LLLDNNNFSGKMTDGLLSSTL-----LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENY 111
           L + N   + ++     + +      L + +V N             F+ + + ++S + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 112 LQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRS 170
                 V   +     F++ ++N  + S+    S L  ++ + L  N +     +AL  +
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL-MT 399

Query: 171 STLLTLDLRDNKL----FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL 226
             + +L+  D  L                ++  L L  N L G +   L    K+ ++DL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDL 457

Query: 227 SHNRL 231
            +NR+
Sbjct: 458 HNNRI 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 43/279 (15%), Positives = 81/279 (29%), Gaps = 39/279 (13%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTH---------- 53
           EL  L LS N     L   +F     LE LD+S+N           +L H          
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDV 135

Query: 54  ------------LRSLLLDNNNFSGKMTDGLLSSTLLEV-LNVSNNKLSGDIPH--WIGN 98
                       L  L L    F       +    L  + L++ +  + G       I N
Sbjct: 136 LPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195

Query: 99  FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN--------SLSGSMVSLSNLSSVE 150
            + L ++    +     + + +  L  L+  +I  N        +    +     L +V 
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255

Query: 151 HIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-----NELSNLHFLLLRGN 205
             ++       +          +  L++ +  +  RI  +        L +L    ++  
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 206 YLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244
                         ++ I  LS +        C  + SS
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 38/202 (18%), Positives = 69/202 (34%), Gaps = 12/202 (5%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN--YMNLTHLRSLLLDNNNF 64
            L LS+N+ S EL  P  S    L  L LS+N    +      ++    L  L + +N  
Sbjct: 56  ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKL-SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNL 123
              ++   ++S  L  L++S N      +    GN + L  L +S    +  + +     
Sbjct: 113 Q-NISCCPMAS--LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAH 168

Query: 124 VCLEFIDISENSLSGSMVSLSNLSSVEHIYLH--NNAINGLIPIALLRSSTLLTLDLRDN 181
           + L  I +   S         +L       LH   +  +       +  + L  L L + 
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 182 KLFGRIPHQINELSNLHFLLLR 203
           KL      ++    +       
Sbjct: 229 KLNDENCQRLMTFLSELTRGPT 250

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 37/254 (14%), Positives = 74/254 (29%), Gaps = 18/254 (7%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN 63
            L  + L   ++  +         P+   L L  +          M++  L  L L N  
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 64  FSGKMTDGLLSS-----TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ----- 113
            + +    L++          +LNV+   +       +  F   W   +    +      
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 114 -----GSIPVQLGNLVCLEFIDISENSLSGSMVSL-SNLSSVEHIYLHNNAINGLIPIAL 167
                         L  L    +       S  +L S  + +    L  +    +  +  
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 168 LRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ--GRIPNQLCQLRKLGIMD 225
              S+   L+   N     +    + L  L  L+L+ N L+   ++      +  L  +D
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 226 LSHNRLNGPIPSCL 239
           +S N LN       
Sbjct: 410 VSLNSLNSHAYDRT 423

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 26/231 (11%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDN 61
           +  I L          + +  FSG   LE +++S N+    +  + + NL  L  + ++ 
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 62  NNFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
            N    +      +   L+ L +SN  +         +     +L + +N    +I    
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--- 145

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
                             S V LS  S    ++L+ N I   I  +    + L  L+L D
Sbjct: 146 ----------------RNSFVGLSFES--VILWLNKNGIQE-IHNSAFNGTQLDELNLSD 186

Query: 181 NKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR 230
           N     +P+ + +  S    L +    +       L  L+KL      + +
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 18/214 (8%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNY-MNLTHLRSLLLD 60
             +L  +++S+N+    +   +FS  P L  + +   N    + P    NL +L+ LL+ 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL----MSENYLQGSI 116
           N           + S    +L++ +N     I     +F GL        +++N +Q  I
Sbjct: 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQ-EI 169

Query: 117 PVQLGNLVCLEFIDISEN----SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSST 172
                N   L+ +++S+N     L          S    + +    I+ L    L     
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPND--VFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 173 LLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNY 206
           L      + K        + +L  L    L    
Sbjct: 228 LRARSTYNLKKL----PTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 9/161 (5%)

Query: 78  LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ-LGNLVCLEFIDISEN-- 134
              L     KL          F  L  + +S+N +   I      NL  L  I I +   
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 135 --SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI- 191
              ++       NL +++++ + N  I  L  +  + S   + LD++DN     I     
Sbjct: 92  LLYINPEA--FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 192 -NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
                    L L  N +Q    +     +   +    +N L
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFL-LLRG 204
            +   +      +  +   A      L  +++  N +   I   + + L  LH + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 205 NYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           N L    P     L  L  + +S+  +
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGI 116

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 46/231 (19%), Positives = 78/231 (33%), Gaps = 26/231 (11%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  L  + NN    ++    S   +L  L   +N        +   LT L  L  D 
Sbjct: 63  LTGLTKLICTSNN----ITTLDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDT 115

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +      +  + LL  LN + N L+ +I   + + + L  L    N     +   + 
Sbjct: 116 NKLT---KLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VT 167

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
               L  +D S N ++   + +S    +  +    N I   + +       L  LD   N
Sbjct: 168 PQTQLTTLDCSFNKITE--LDVSQNKLLNRLNCDTNNITK-LDLNQNIQ--LTFLDCSSN 222

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           KL   I   +  L+ L +     N L     + L +L  L         L 
Sbjct: 223 KL-TEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 25/241 (10%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           ++  L +LD   ++ +             L  L  ++NN       +    T+L  L  D
Sbjct: 40  QLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACD 93

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           +N  +      L   T L  LN   NKL+  +   +     L  L  + N L     + +
Sbjct: 94  SNKLTNLDVTPL---TKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDV 144

Query: 121 GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
            +   L  +D   N    + + ++  + +  +    N I  L  ++  +   L  L+   
Sbjct: 145 SHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKITEL-DVSQNKL--LNRLNCDT 200

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N +  ++   +N+   L FL    N L   I   +  L +L   D S N L     S L 
Sbjct: 201 NNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLS 254

Query: 241 N 241
            
Sbjct: 255 K 255

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 21/209 (10%)

Query: 24  FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83
                +L +LD  N++           LT L  L+  +NN +   T  L  +T L  L  
Sbjct: 38  EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLAC 92

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL 143
            +NKL+ ++   +   + L  L    N L     + +     L +++ + N+L  + + +
Sbjct: 93  DSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTL--TEIDV 144

Query: 144 SNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR 203
           S+ + +  +  H N     + +       L TLD   NK+       +++   L+ L   
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQ--LTTLDCSFNKI---TELDVSQNKLLNRLNCD 199

Query: 204 GNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
            N +  ++   L Q  +L  +D S N+L 
Sbjct: 200 TNNIT-KLD--LNQNIQLTFLDCSSNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 27/200 (13%), Positives = 67/200 (33%), Gaps = 20/200 (10%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             +L  LD S N     L+    +    L   D S N        +   L+ L +L    
Sbjct: 211 NIQLTFLDCSSNK----LTEIDVTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQ 263

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
            +        L  +T L        +   ++   + + + L++L      +   +   L 
Sbjct: 264 TDLL---EIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LS 315

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
               L ++ ++   L+   + +S+ + ++ +   N  I     +  + +  L      + 
Sbjct: 316 QNPKLVYLYLNNTELT--ELDVSHNTKLKSLSCVNAHIQDFSSVGKIPA--LNNNFEAEG 371

Query: 182 KLFGRIPHQINELSNLHFLL 201
           +    +P +    ++L   +
Sbjct: 372 QTI-TMPKETLTNNSLTIAV 390

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 12/182 (6%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  +  L L+ N  +        +   +L  L L  N    +   +  +L  L+SL L++
Sbjct: 67  LPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEH 121

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  S    +GL+    LE L + NNK++ DI   +   + L  L + +N +   I   L 
Sbjct: 122 NGIS--DINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLA 175

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
            L  L+ + +S+N +S  + +L+ L +++ + L +                  T+   D 
Sbjct: 176 GLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 182 KL 183
            L
Sbjct: 235 SL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 46/249 (18%), Positives = 91/249 (36%), Gaps = 40/249 (16%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             E I  +L + + +        +   S++ +  +N++   +       L ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNG 77

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +      L +   L  L +  NK+  D+                           L 
Sbjct: 78  NKLT--DIKPLANLKNLGWLFLDENKVK-DL-------------------------SSLK 109

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
           +L  L+ + +  N +S  +  L +L  +E +YL NN I  +  ++ L    L TL L DN
Sbjct: 110 DLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTK--LDTLSLEDN 166

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
           ++       +  L+ L  L L  N++       L  L+ L +++L          +   N
Sbjct: 167 QI--SDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 242 VSSWREVID 250
           +     V +
Sbjct: 223 LVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 13/182 (7%)

Query: 50  NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSE 109
                    L   + +  +T   L+S  ++ +  +N+ +   +   I     +  L ++ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 110 NYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLR 169
           N L    P  L NL  L ++ + EN +   + SL +L  ++ + L +N I+ +  +  L 
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 170 SSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229
              L +L L +NK+       ++ L+ L  L L  N +   I   L  L KL  + LS N
Sbjct: 135 Q--LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN 188

Query: 230 RL 231
            +
Sbjct: 189 HI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           ++K+L +L L  N  S           P LE+L L NN            LT L +L L+
Sbjct: 110 DLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLE 164

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL 120
           +N  S      L   T L+ L +S N +S D+   +     L VL +             
Sbjct: 165 DNQIS--DIVPLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQ 220

Query: 121 GNLVCLEFIDISENSL 136
            NLV    +  ++ SL
Sbjct: 221 SNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 120 LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
                     ++ + S++   V+ + L+S++ I  +N+ I  +  I  L +  +  L L 
Sbjct: 20  DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQYLPN--VTKLFLN 76

Query: 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
            NKL       +  L NL +L L  N ++  + + L  L+KL  + L HN ++
Sbjct: 77  GNKL--TDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLLDNNNF 64
            LDLS NN S   +    +   +L +L LS+N+       +     + +LR L L +N+ 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHL 100

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQGSIPVQ-- 119
                        LEVL + NN +   +      F     L  L +S+N +    PV+  
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIV-VVDR--NAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 120 --LGNLVCLEFIDISENSLS----GSMVSLSNLSSVEHIYLHNNAIN 160
                L  L  +D+S N L       +  L        +YLHNN + 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW-VKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 19/167 (11%)

Query: 28  PSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLLDNNNFSGKMTDGLLSS-TLLEVLNVS 84
                LDLS+NN   +L   +    LT+L SLLL +N+ +  ++         L  L++S
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 85  NNKLSGDIPHWIGNFSGLW---VLLMSENYLQGSIPV-QLGNLVCLEFIDISENSLS--- 137
           +N L   +      FS L    VLL+  N++   +      ++  L+ + +S+N +S   
Sbjct: 97  SNHLH-TLDE--FLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFP 152

Query: 138 -GSMVSLSNLSSVEHIYLHNNAINGLIPIAL--LRSSTLLTLDLRDN 181
              +   + L  +  + L +N +  L    L  L +     L L +N
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 14/172 (8%)

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ--LGNLVCLEFIDISENSLSG-SM 140
           S  +L  ++P  +   S   +L +S N L   +  +     L  L  + +S N L+  S 
Sbjct: 26  SKQQLP-NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 141 VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHF 199
            +   + ++ ++ L +N ++ L          L  L L +N +   +      +++ L  
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQK 140

Query: 200 LLLRGNYLQGRIPNQ----LCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWRE 247
           L L  N +  R P +      +L KL ++DLS N+L     + L  + +W +
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 58/212 (27%), Positives = 82/212 (38%), Gaps = 18/212 (8%)

Query: 24  FSGCPSLETLDLSNNNFYGQLFPNYMNL-THLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82
            S   S   ++    N      P   +L      L L  N         L+  T L  LN
Sbjct: 6   VSKVASHLEVNCDKRNL--TALP--PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 83  VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS----G 138
           +   +L+  +    G    L  L +S N LQ S+P+    L  L  +D+S N L+    G
Sbjct: 62  LDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 139 SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNL 197
           ++  L  L   + +YL  N +  L P  L  +  L  L L +N L   +P  + N L NL
Sbjct: 119 ALRGLGEL---QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENL 174

Query: 198 HFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229
             LLL+ N L   IP        L    L  N
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 49/202 (24%), Positives = 65/202 (32%), Gaps = 36/202 (17%)

Query: 8   LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK 67
           L LS N      S         L  L+L               L  L +L L +N     
Sbjct: 36  LHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-S 91

Query: 68  MTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLE 127
           +     +   L VL+VS N+L+  +P   G   GL                +L  L    
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGL---------------GELQEL---- 129

Query: 128 FIDISENSLS----GSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL 183
              +  N L     G +     L   E + L NN +  L    L     L TL L++N L
Sbjct: 130 --YLKGNELKTLPPGLLTPTPKL---EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 184 FGRIPHQINELSNLHFLLLRGN 205
              IP        L F  L GN
Sbjct: 185 -YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 16/160 (10%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRSLLLDNN 62
            L  L+L R   +      +    P L TLDLS+N    Q  P     L  L  L +  N
Sbjct: 56  RLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFN 110

Query: 63  NFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQGSIPV 118
             +  +  G L     L+ L +  N+L   +P   G  +    L  L ++ N L   +P 
Sbjct: 111 RLT-SLPLGALRGLGELQELYLKGNELK-TLPP--GLLTPTPKLEKLSLANNNLT-ELPA 165

Query: 119 QL-GNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNN 157
            L   L  L+ + + ENSL            +   +LH N
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 7/158 (4%)

Query: 75  STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN 134
                 +N     L+  +P  +       +L +SEN L       L     L  +++   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 135 SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NE 193
            L+  +     L  +  + L +N +  L P+       L  LD+  N+L   +P      
Sbjct: 66  ELT-KLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL-TSLPLGALRG 122

Query: 194 LSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           L  L  L L+GN L+   P  L    KL  + L++N L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 132 SENSLSGSMVSLSN--LSSV--------EHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
                S   V+     L+++          ++L  N +       L+  + L  L+L   
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRL 231
           +L          L  L  L L  N LQ  +P     L  L ++D+S NRL
Sbjct: 66  EL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 13/222 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
            ++L   +LS       + +     C  L+ L+  N      +      L  L       
Sbjct: 348 DEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
             FS       +       L+   +K   +       ++ + VL ++   L   +   L 
Sbjct: 406 QYFSTLKA---VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLE 460

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
            L+ +  +D+S N L     +L+ L  +E +   +NA+  +  +A L    L  L L +N
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR--LQELLLCNN 518

Query: 182 KL--FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL 221
           +L     I   +     L  L L+GN L  +      +L ++
Sbjct: 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 4e-09
 Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 11/205 (5%)

Query: 29  SLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK 87
            L   +LS       +  + + +   L+ L  +N      +   + +   L     +   
Sbjct: 350 QLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 88  LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLS 147
            S        +      L    +       V       +  + ++   L+  +  L  L 
Sbjct: 408 FSTLK---AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQLL 463

Query: 148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYL 207
            V H+ L +N +   +P AL     L  L   DN L   +   +  L  L  LLL  N L
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL 520

Query: 208 QG-RIPNQLCQLRKLGIMDLSHNRL 231
           Q       L    +L +++L  N L
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 7e-07
 Identities = 39/235 (16%), Positives = 75/235 (31%), Gaps = 29/235 (12%)

Query: 20  SRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLE 79
           +RP       L    L++          +      +  +L  +       D   +   L 
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLF 352

Query: 80  VLNVSNNKLSGDIPHWIGNFSGL--------WVLLMSENYLQGSIPVQ-----LGNLVCL 126
              +S  K +  +   + +   L        W LL     ++   P+      L     L
Sbjct: 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 127 EFIDISENSLSGSMVS---------LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD 177
           + +D    +    + S             + V  ++L +  +  L  +  L    +  LD
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL--LLVTHLD 469

Query: 178 LRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           L  N+L   +P  +  L  L  L    N L+  +   +  L +L  + L +NRL 
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 29/200 (14%), Positives = 67/200 (33%), Gaps = 7/200 (3%)

Query: 42  GQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG 101
           G+  P+++ L  L +  L++             S   +   +  ++              
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQ 350

Query: 102 LWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING 161
           L+   +S       +  +L +   L   ++   +    +  +  + +++ +      +  
Sbjct: 351 LFRCELSVEKST-VLQSELESCKEL--QELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL 221
              +  +       LD   +K          E +++  L L    L   + + L QL  +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLV 465

Query: 222 GIMDLSHNRLNGPIPSCLGN 241
             +DLSHNRL   +P  L  
Sbjct: 466 THLDLSHNRLRA-LPPALAA 484

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 44/274 (16%), Positives = 94/274 (34%), Gaps = 48/274 (17%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSG---CPSLETLDLSNNNF---------YGQLFPNYM 49
           +++   + L     +    + I S     P+L  L+L +N            G   P+  
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-- 84

Query: 50  NLTHLRSLLLDNNNFSGK----MTDGLLSSTLLEVLNVSNNKLSGD-----IPHWIGNFS 100
               ++ L L N   +G     ++  L +   L+ L++S+N L            +    
Sbjct: 85  --CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142

Query: 101 GLWVLLMSENYLQGSIPVQLGNLV----CLEFIDISENSLSGSMVSL------SNLSSVE 150
            L  L +    L  +    L +++      + + +S N ++ + V +       +   +E
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 151 HIYLHNNAIN----GLIPIALLRSSTLLTLDLRDNKLFGR-----IPHQINELSNLHFLL 201
            + L +  +       +   +   ++L  L L  NKL         P  ++  S L  L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 202 LRGNYLQGR----IPNQLCQLRKLGIMDLSHNRL 231
           +    +  +    +   L     L  + L+ N L
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 37/213 (17%)

Query: 5   LITLDLSRNNFSGELSRPIFS---GCPSLETLDLSNNNFYGQ--------LFPNYMNLTH 53
           L  L L   + S     P+ S     P  + L +SNN+            L  +   L  
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA 203

Query: 54  LRSLLLDNNNFSGK----MTDGLLSSTLLEVLNVSNNKLSGD-----IPHWIGNFSGLWV 104
           L+   L++   +      +   + S   L  L + +NKL         P  +   S L  
Sbjct: 204 LK---LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 105 LLMSENYLQ----GSIPVQLGNLVCLEFIDISENSLSGSMVSL------SNLSSVEHIYL 154
           L + E  +     G +   L     L+ + ++ N L      L           +E +++
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 155 HNNAI--NGLIPIA--LLRSSTLLTLDLRDNKL 183
            + +         +  L ++  LL L + +N+L
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 41/213 (19%), Positives = 65/213 (30%), Gaps = 32/213 (15%)

Query: 3   KELITLDLSRNNFSGE----LSRPIFSGCPSLETLDLSNNNF----YGQLFPNYMNLTHL 54
             L  L L  N         L   +      L TL +          G L         L
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 55  RSLLLDNNNFSGK----MTDGLLS-STLLEVLNVSNNKLSGD----IPHWIGNFSGLWVL 105
           + L L  N    +    + + LL     LE L V +   +          +     L  L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 106 LMSENYLQGSIPVQLGNLVC-----LEFIDISENSLSGSMVS-----LSNLSSVEHIYLH 155
            +S N L+ +   +L   +      L  + +++  +S S  S     L    S+  + L 
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 156 NNAINGLIPIALLRS-----STLLTLDLRDNKL 183
           NN +     + L+ S       L  L L D   
Sbjct: 407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 42/210 (20%), Positives = 70/210 (33%), Gaps = 38/210 (18%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSG---CPSLETLDLSNN--NFYGQLFPNYM------ 49
           E   +  + LS N    E +R +         LE  + S+          P  +      
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 50  --NLTHLRSLLLDNNNFSGK----MTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLW 103
                 L ++ L +N F       + D L   T LE L + NN         +G  +G  
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG--------LGPQAG-- 139

Query: 104 VLLMSENYLQGSIPVQLGNLVCLEFIDISENSL-SGSMVSLS----NLSSVEHIYLHNNA 158
              ++    + ++  +  N   L  I    N L +GSM   +    +   +  + +  N 
Sbjct: 140 -AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 159 IN-----GLIPIALLRSSTLLTLDLRDNKL 183
           I       L+   L     L  LDL+DN  
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 41/230 (17%), Positives = 77/230 (33%), Gaps = 48/230 (20%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSG----------CPSLETLDLSNNNFYGQ----LFP 46
             K+L   + S + F+G +   I             CP L T+ LS+N F       L  
Sbjct: 58  SKKDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 47  NYMNLTHLRSLLLDNNNFS-------------GKMTDGLLSSTLLEVLNVSNNKLSGD-- 91
                T L  L L NN                  +     ++  L  +    N+L     
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 92  --IPHWIGNFSGLWVLLMSENYL-----QGSIPVQLGNLVCLEFIDISENSLSGSMVS-- 142
                   +   L  + M +N +     +  +   L     L+ +D+ +N+ +    S  
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 143 ---LSNLSSVEHIYLHNNAI--NGLIPIA----LLRSSTLLTLDLRDNKL 183
              L +  ++  + L++  +   G   +      L +  L TL L+ N++
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 9e-07
 Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 5/89 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNY--MNLTHLRSLLL 59
            + L  L +        L      G   L  L +  +    +            L  L L
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--RFVAPDAFHFTPRLSRLNL 87

Query: 60  DNNNFSGKMTDGLLSSTLLEVLNVSNNKL 88
             N     ++   +    L+ L +S N L
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 8/133 (6%)

Query: 115 SIPVQLGNLVCLEFIDISENSLSGSM--VSLSNLSSVEHIYLHNNAINGLIPIALLRSST 172
                L     L  + I        +    L  L  + ++ +  + +  + P A   +  
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 173 LLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232
           L  L+L  N L   +  +  +  +L  L+L GN L     +  C LR L   +       
Sbjct: 82  LSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGGV 135

Query: 233 GPIPSCLGNVSSW 245
                        
Sbjct: 136 PEQKLQCHGQGPL 148

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 24  FSGCPSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82
             G  +L  L + N      L    +  L  LR+L +  +       D    +  L  LN
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 83  VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQ 113
           +S N L       +   S L  L++S N L 
Sbjct: 87  LSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 36/157 (22%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN--YMNLTHLRSLLLDNNNF 64
            + L +N     +    FS    L  +DLSNN           +  L  L SL+L  N  
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKI 92

Query: 65  S---GKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           +     + +GL     L++L ++ NK++  +      F                      
Sbjct: 93  TELPKSLFEGL---FSLQLLLLNANKINC-LRV--DAFQ--------------------- 125

Query: 122 NLVCLEFIDISENSL-SGSMVSLSNLSSVEHIYLHNN 157
           +L  L  + + +N L + +  + S L +++ ++L  N
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFLLLRGN 205
            ++  I L  N I  + P A      L  +DL +N++   +       L +L+ L+L GN
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGN 90

Query: 206 YLQGRIPNQLCQLRKLGIMDLSHNRL 231
            +     +    L  L ++ L+ N++
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKI 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 142 SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NELSNLHFL 200
           + S    +  I L NN I+ L P A     +L +L L  NK+   +P  +   L +L  L
Sbjct: 51  AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL 109

Query: 201 LLRGNYLQGRIPNQL-CQLRKLGIMDLSHNRL 231
           LL  N +   +       L  L ++ L  N+L
Sbjct: 110 LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 52/207 (25%), Positives = 79/207 (38%), Gaps = 42/207 (20%)

Query: 8   LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLLDNNNFS 65
           LDL  N  S  L    F     L  L L++N    Q  P  +   L +L +L + +N   
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 66  ---GKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQGSIPVQ 119
                + D L     L  L +  N+L   +P     F     L  L +  N LQ S+P  
Sbjct: 99  ALPIGVFDQL---VNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQ-SLP-- 149

Query: 120 LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179
                             G    L++L   + + L+NN +  +   A  + + L TL L 
Sbjct: 150 -----------------KGVFDKLTSL---KELRLYNNQLKRVPEGAFDKLTELKTLKLD 189

Query: 180 DNKLFGRIPHQI-NELSNLHFLLLRGN 205
           +N+L  R+P    + L  L  L L+ N
Sbjct: 190 NNQL-KRVPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 51/168 (30%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNN--------FYGQLFPNYMNLTHLRSLL 58
            L L+ N F+   +  IF   P L  ++ SNN         F G         + +  +L
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------ASGVNEIL 87

Query: 59  LDNN---NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGL---WVLLMSENYL 112
           L +N   N   KM  GL     L+ L + +N+++  + +   +F GL    +L + +N +
Sbjct: 88  LTSNRLENVQHKMFKGL---ESLKTLMLRSNRIT-CVGN--DSFIGLSSVRLLSLYDNQI 141

Query: 113 QGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN 160
             ++                         +   L S+  + L  N  N
Sbjct: 142 T-TVAPG----------------------AFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 116 IPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT 175
           IP     L  L   + +    +G    L  L     I   NN I  +   A   +S +  
Sbjct: 30  IPQYTAELR-LNNNEFTVLEATGIFKKLPQL---RKINFSNNKITDIEEGAFEGASGVNE 85

Query: 176 LDLRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPN----QLCQLRKLGIMDLSHNR 230
           + L  N+L   + H++   L +L  L+LR N +   + N     L  +R L    L  N+
Sbjct: 86  ILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLL---SLYDNQ 140

Query: 231 L 231
           +
Sbjct: 141 I 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 16/158 (10%)

Query: 8   LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN--YMNLTHLRSLLLDNNNFS 65
           LDL     +  LS   F G   L  L+L  N    Q      + +LT L +L L NN  +
Sbjct: 40  LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 66  GKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSG---LWVLLMSENYLQGSIPVQL- 120
             +  G+    T L+ L +  N+L   +P   G F     L  L ++ N LQ SIP    
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKS-LPS--GVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 121 GNLVCLEFIDISENSL-SGSMVSLSNLSSVEHIYLHNN 157
             L  L+ + +S N L S    +   L  ++ I L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN 63
           E + L         E      S   + + L LS NN   +   +   + +LR L L  N 
Sbjct: 26  EKVELHGMIPPI--EKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNL 81

Query: 64  FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ-LGN 122
              K+ +    +  LE L +S N+++  +   I     L VL MS N +     +  L  
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 123 LVCLEFIDISEN 134
           L  LE + ++ N
Sbjct: 139 LDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 33/177 (18%), Positives = 54/177 (30%), Gaps = 30/177 (16%)

Query: 29  SLETLDLSNN-NFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK 87
             E ++L        ++      L   + L L  NN        L     L +L++  N 
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE--KISSLSGMENLRILSLGRNL 81

Query: 88  LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLS 147
           +   I +       L  L +S N +                      SLSG    +  L 
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA---------------------SLSG----IEKLV 115

Query: 148 SVEHIYLHNNAINGLIPIALLRSSTLL-TLDLRDNKLFGRIPHQINELSNLHFLLLR 203
           ++  +Y+ NN I     I  L +   L  L L  N L+               ++ R
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSG--CPSLETLDLSNNNFYG----QLFPNYMNLTHLR 55
              L  L +        +          P LET+D+S           L  +   + HL+
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 56  SLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGD 91
            + +  N  S +M    L  +L   ++VS+++   D
Sbjct: 311 FINMKYNYLSDEMKK-ELQKSLPMKIDVSDSQEYDD 345

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 33/151 (21%)

Query: 5   LITLDLSRNNFSGELSRPIF-SGCPSLETLDLS-NNNFYG--------QLFPNYMNLTHL 54
           L +L++        +   I  S  P+LE L L      YG        +   +     +L
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 55  RSLLLDNNNFSGKMTDGLLSSTL---LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENY 111
           + L + +      + +  L S +   LE +++S   L+ +         G  +LL     
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE---------GARLLLDH--- 302

Query: 112 LQGSIPVQLGNLVCLEFIDISENSLSGSMVS 142
                   +  +  L+FI++  N LS  M  
Sbjct: 303 --------VDKIKHLKFINMKYNYLSDEMKK 325

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 39.2 bits (90), Expect = 9e-04
 Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 17/200 (8%)

Query: 48  YMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLM 107
             + + +   +++N                 E   +S  +   D+   +     L  L +
Sbjct: 121 GEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPLLNNLKI 179

Query: 108 SENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHI--------YLHNNAI 159
                         NL  LE I           +  S+L ++E +        Y  +  +
Sbjct: 180 KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239

Query: 160 NGLIPIALLRSSTLLT-LDLRDNKLFGRIPHQINE---LSNLHFLLLRGNYLQGR----I 211
           N   P+        L  L + D +    +     E   L  L  + +    L       +
Sbjct: 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299

Query: 212 PNQLCQLRKLGIMDLSHNRL 231
            + + +++ L  +++ +N L
Sbjct: 300 LDHVDKIKHLKFINMKYNYL 319

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 50  NLTHLRSLLLDNNNFS-GKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMS 108
             + ++ L+LDN+  + GK+         LE L+  N  L+  I + +   + L  L +S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 109 ENYLQGSIPVQLGNLVCLEFIDISENSLS--GSMVSLSNLSSVEHIYLHNNAI 159
           +N + G + V       L  +++S N +    ++  L  L +++ + L N  +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 114 GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
           G +         LEF+      L+ S+ +L  L+ ++ + L +N ++G + +   +   L
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 174 LTLDLRDNKLFG-RIPHQINELSNLHFLLLRGN 205
             L+L  NK+        + +L NL  L L   
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 114 GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTL 173
           G I       V LEF+ +    L  S+ +L  L  ++ + L  N I G + +   +   L
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 174 LTLDLRDNKL--FGRIPHQINELSNLHFLLLRGN 205
             L+L  NKL     +   + +L  L  L L   
Sbjct: 98  THLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 4   ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN 63
            +  L L     +      + +   +LE L L N         N   L  L+ L L  N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSENR 82

Query: 64  FSGKMTDGLLSSTLLEVLNVSNNKLS 89
             G +         L  LN+S NKL 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 25  SGCP-SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSS-TLLEVLN 82
           +G P + + L L +N         + +L +L+ L L +N     +  G+  S T L VL+
Sbjct: 36  AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94

Query: 83  VSNNKLSGDIPHWIGNF---SGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSL-SG 138
           +  N+L+  +P     F     L  L M  N L   +P  +  L  L  + + +N L S 
Sbjct: 95  LGTNQLTV-LPS--AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150

Query: 139 SMVSLSNLSSVEHIYLHNN 157
              +   LSS+ H YL  N
Sbjct: 151 PHGAFDRLSSLTHAYLFGN 169

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 27/198 (13%), Positives = 53/198 (26%), Gaps = 24/198 (12%)

Query: 5   LITLDLSRNNFSGELSRPIFSG---CPSLETLDLSNNNFYGQ--------LFPNYMNLTH 53
           + TL LS N  +      +  G     S+  L L +     +        L  N      
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN----RQ 212

Query: 54  LRSLLLDNNNFSGK----MTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSE 109
           L+ L +  N         +         LE+L++  N+LS +    + +  G        
Sbjct: 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272

Query: 110 NYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN--GLIPIA- 166
                     +     +   ++  N  S     +     +    L ++          A 
Sbjct: 273 VVSLTEGT-AVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQ 331

Query: 167 -LLRSSTLLTLDLRDNKL 183
            L     +  L  +    
Sbjct: 332 LLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY-------GQLFPNYMNLTHL 54
              L  ++L+         R +         L L  N+           L  +  +   +
Sbjct: 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQI 157

Query: 55  RSLLLDNNNFSGK----MTDGLLSSTLLEVLNVSNNKLS 89
            +L L NN  +      + +GL  +T +  L++ +  L 
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 53/323 (16%), Positives = 102/323 (31%), Gaps = 86/323 (26%)

Query: 3   KELITLDLSRNN-FSGELSRPIF----SGCPSLETLDLSNNNFYGQLFPNYMNLT----- 52
           K  + LD+  +     ++   IF      C S ET+         Q+ PN+ + +     
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 53  --------------------HLRSLL-LDN-------NNFSG--KMTDGLLSSTLLEVLN 82
                               +   LL L N       N F+   K+   LL++   +V +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQVTD 279

Query: 83  VSNNKLSGDIP--HWIGNFSGLWVLLMSENYLQ---GSIPVQ--LGN--LVCL------E 127
             +   +  I   H     +   V  +   YL      +P +    N   + +      +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 128 FIDISEN-------SLSGSM-VSLSNLSSVEH-IYLHNNAI---NGLIPIALLRSSTLLT 175
            +   +N        L+  +  SL+ L   E+       ++   +  IP  LL   +L+ 
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIW 396

Query: 176 LDLRDNKLFGRIPHQI-NELSNLHFLLLRGNYLQGRIPNQLCQLR-KLGIMDLSHNRL-- 231
            D+            + N+L     +  +       IP+   +L+ KL      H  +  
Sbjct: 397 FDVIK-----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 232 --NGPIPSCLGNVSSWREVIDDY 252
             N P      ++      +D Y
Sbjct: 452 HYNIPKTFDSDDLI--PPYLDQY 472

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
                  LDL        +   + +     + +D S+N    +    +  L  L++LL++
Sbjct: 17  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVN 72

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLS 89
           NN           +   L  L ++NN L 
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLV 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.92
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.01
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	94.58
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	87.93

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.4e-34  Score=252.06  Aligned_cols=255  Identities=34%  Similarity=0.502  Sum_probs=221.4

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|.+++.+|. .+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+++
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence            46788888888888755554 45778899999999998887788888888999999999998887788888888999999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeeccccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      ++++|.+....|..+..+++|+.|++.+|.+.+..|.++..+++|+.|++++|.+.. .+..+..+++|+.+++++|.++
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            999999887888888899999999999999988889899999999999999999874 5667888899999999998776


Q ss_pred             ccCccc----------------------------------------------------------------------hhcC
Q 035481          161 GLIPIA----------------------------------------------------------------------LLRS  170 (258)
Q Consensus       161 ~~~~~~----------------------------------------------------------------------~~~~  170 (258)
                      +..|..                                                                      +..+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            443322                                                                      2335


Q ss_pred             CCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhh
Q 035481          171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVID  250 (258)
Q Consensus       171 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l  250 (258)
                      +.|+.|++++|.++..+|..+..+++|+.|++++|.+++.+|..+.++++|+.|||++|.+++.+|..+..+++|+.|++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            67889999999999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCC
Q 035481          251 DYSLLSG  257 (258)
Q Consensus       251 ~~~~~~~  257 (258)
                      ++|+++|
T Consensus       712 s~N~l~g  718 (768)
T 3rgz_A          712 SNNNLSG  718 (768)
T ss_dssp             CSSEEEE
T ss_pred             cCCcccc
Confidence            9999876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-34  Score=227.03  Aligned_cols=251  Identities=28%  Similarity=0.392  Sum_probs=225.6

Q ss_pred             CcceEEecCcCcccc--ccCcccccCCCCccEEECCC-CccccccCccccCCcccceeecccccccccCCcccCCCCCcc
Q 035481            3 KELITLDLSRNNFSG--ELSRPIFSGCPSLETLDLSN-NNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLE   79 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   79 (258)
                      .+++.|+++++.+.+  .+|. .+.++++|++|++++ |.+.+..+..|.++++|++|++++|.++...+..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            579999999999986  5665 468899999999995 888878888999999999999999999877888899999999


Q ss_pred             EEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCC-CccEEEccccccee-ecCCCCCcCCCcEEEeecc
Q 035481           80 VLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV-CLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNN  157 (258)
Q Consensus        80 ~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~  157 (258)
                      +|++++|.+....|..+..+++|++|++.+|.+.+..|..+..++ .|+.|++++|.+.. .+..+.... |+.+++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            999999999988888999999999999999999888898999888 99999999999985 555666665 999999999


Q ss_pred             cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481          158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS  237 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~  237 (258)
                      .+++..+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            99988888899999999999999999755544 77889999999999999989999999999999999999999988887


Q ss_pred             ccccccchhhhhhcccc-cCC
Q 035481          238 CLGNVSSWREVIDDYSL-LSG  257 (258)
Q Consensus       238 ~~~~l~~L~~l~l~~~~-~~~  257 (258)
                      . ..+++|+.+++++|+ +.|
T Consensus       287 ~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             S-TTGGGSCGGGTCSSSEEES
T ss_pred             C-ccccccChHHhcCCCCccC
Confidence            6 899999999999998 443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.5e-34  Score=235.49  Aligned_cols=256  Identities=21%  Similarity=0.219  Sum_probs=153.9

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCC--cccCCCCCcc
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMT--DGLLSSTLLE   79 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~   79 (258)
                      +++|++|++++|.+.+.++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+  ..+..+++|+
T Consensus        53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            45566666666655444555555666666666666666655555556666666666666666543222  2255566666


Q ss_pred             EEEccCccccCCCCCc-CCCCCccceEEecCccccCCcCccccC----------------------------------CC
Q 035481           80 VLNVSNNKLSGDIPHW-IGNFSGLWVLLMSENYLQGSIPVQLGN----------------------------------LV  124 (258)
Q Consensus        80 ~l~l~~~~~~~~~~~~-l~~l~~L~~l~l~~~~~~~~~~~~~~~----------------------------------~~  124 (258)
                      +|++++|.+....+.. +..+++|+++++.+|.+.+..+..+..                                  ++
T Consensus       133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  212 (455)
T 3v47_A          133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT  212 (455)
T ss_dssp             EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred             EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence            6666666665444443 556666666666666655443332221                                  13


Q ss_pred             CccEEEcccccc---------------------------------------------------------------eee-c
Q 035481          125 CLEFIDISENSL---------------------------------------------------------------SGS-M  140 (258)
Q Consensus       125 ~L~~L~l~~~~~---------------------------------------------------------------~~~-~  140 (258)
                      +|+.|++++|.+                                                               ... +
T Consensus       213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  292 (455)
T 3v47_A          213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK  292 (455)
T ss_dssp             EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred             eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence            344444444432                                                               221 2


Q ss_pred             CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCc
Q 035481          141 VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK  220 (258)
Q Consensus       141 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  220 (258)
                      ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++
T Consensus       293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence            23445566666666666666665666666677777777777766555666677777777777777777666667777777


Q ss_pred             ccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          221 LGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       221 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      |++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus       373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            7777777777765444456777777777777777764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=232.68  Aligned_cols=252  Identities=22%  Similarity=0.203  Sum_probs=136.3

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      ++++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        33 ~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            4555555555555 344444555555555555555555444455555555555555555554333334444555555555


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCc------------------------cccCCCCccEEEcccccceee
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV------------------------QLGNLVCLEFIDISENSLSGS  139 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~------------------------~~~~~~~L~~L~l~~~~~~~~  139 (258)
                      ++|.+....+..+..+++|+.|++.+|.+.+..+.                        .+..+++|+.|+++.|.+...
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            55544433334444444444444444444333333                        344444444444444444332


Q ss_pred             cC-CCCCcCC------------------------CcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccC
Q 035481          140 MV-SLSNLSS------------------------VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINEL  194 (258)
Q Consensus       140 ~~-~~~~~~~------------------------L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  194 (258)
                      .. .+..+++                        |++|++++|.++......+..+++|+.|++++|.+....+..+..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            21 2333333                        3444444444443333455566666666666666665555566666


Q ss_pred             CCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481          195 SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       195 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      ++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|+++
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            77777777777776666667777777777777777776444445667777777777777664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=233.22  Aligned_cols=231  Identities=22%  Similarity=0.239  Sum_probs=154.2

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|.++ .++...|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|
T Consensus        79 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  157 (477)
T 2id5_A           79 LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL  157 (477)
T ss_dssp             CTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred             CccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence            344444444444444 4444444445555555555554444444444445555555555555444444445555555555


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccc------------------------ccce
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISE------------------------NSLS  137 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~------------------------~~~~  137 (258)
                      ++++|.+....+..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++                        |.+.
T Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  237 (477)
T 2id5_A          158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT  237 (477)
T ss_dssp             EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred             ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence            5555555433333445556666666666655544444555556555555554                        4444


Q ss_pred             eec-CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCcccc
Q 035481          138 GSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC  216 (258)
Q Consensus       138 ~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~  216 (258)
                      ..+ ..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..|.
T Consensus       238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  317 (477)
T 2id5_A          238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH  317 (477)
T ss_dssp             SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred             ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence            333 2356788999999999999988888899999999999999999888888999999999999999999977777889


Q ss_pred             CCCcccEEEccCceeec
Q 035481          217 QLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       217 ~~~~L~~l~l~~~~~~~  233 (258)
                      .+++|++|++++|.+..
T Consensus       318 ~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          318 SVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CGGGCCEEECCSSCEEC
T ss_pred             CCcccCEEEccCCCccC
Confidence            99999999999999973

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-33  Score=244.57  Aligned_cols=254  Identities=33%  Similarity=0.465  Sum_probs=207.7

Q ss_pred             cceEEecCcCccccccCccccc-CCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            4 ELITLDLSRNNFSGELSRPIFS-GCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      +|++|++++|.+++.++..... .+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|+.++
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            4555555555554433333211 156677777777777767777788888888888888888777777888888888898


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeecccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      +++|.+....|..+..+++|+.+++.+|.+.+..|..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.+++
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  528 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG  528 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence            88888887788888888999999999999888888888889999999999998874 56677888999999999999988


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChh---------------------------------------------------
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQ---------------------------------------------------  190 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------------------------------------  190 (258)
                      ..+..+..+++|+.|++++|.+...+|..                                                   
T Consensus       529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  608 (768)
T 3rgz_A          529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS  608 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred             cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence            88888999999999999999876544432                                                   


Q ss_pred             -------------------hccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhc
Q 035481          191 -------------------INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDD  251 (258)
Q Consensus       191 -------------------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~  251 (258)
                                         +..+++|+.|++++|++++.+|..+.+++.|+.|+|++|.+++.+|..++.+++|+.|+++
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs  688 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS  688 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence                               2234678899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCC
Q 035481          252 YSLLSG  257 (258)
Q Consensus       252 ~~~~~~  257 (258)
                      +|+++|
T Consensus       689 ~N~l~g  694 (768)
T 3rgz_A          689 SNKLDG  694 (768)
T ss_dssp             SSCCEE
T ss_pred             CCcccC
Confidence            999986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.4e-33  Score=231.13  Aligned_cols=255  Identities=22%  Similarity=0.239  Sum_probs=209.9

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccc-cccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY-GQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      ++|++|++++|.++ .++...|.++++|++|++++|.+. .+.+..|.++++|++|++++|.++...+..+..+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            57999999999998 666677899999999999999886 3446778999999999999999987778889999999999


Q ss_pred             EccCccccCCCC--CcCCCCCccceEEecCccccCCcCcc-ccCCCCccEEEcccccceeecC-CCC-------------
Q 035481           82 NVSNNKLSGDIP--HWIGNFSGLWVLLMSENYLQGSIPVQ-LGNLVCLEFIDISENSLSGSMV-SLS-------------  144 (258)
Q Consensus        82 ~l~~~~~~~~~~--~~l~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~-------------  144 (258)
                      ++++|.+....+  ..+..+++|++|++.+|.+.+..+.. +..+++|+.|++++|.+..... .+.             
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence            999999875333  34888999999999999998776765 7889999999999998765321 111             


Q ss_pred             ---------------------CcC--------------------------------------------------------
Q 035481          145 ---------------------NLS--------------------------------------------------------  147 (258)
Q Consensus       145 ---------------------~~~--------------------------------------------------------  147 (258)
                                           ..+                                                        
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  268 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT  268 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence                                 113                                                        


Q ss_pred             -------CCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCc
Q 035481          148 -------SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK  220 (258)
Q Consensus       148 -------~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  220 (258)
                             +++++++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence                   3444444455554445666778889999999999888777788888999999999999988777888889999


Q ss_pred             ccEEEccCceeecCCCcccccccchhhhhhcccccCCC
Q 035481          221 LGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF  258 (258)
Q Consensus       221 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  258 (258)
                      |++|++++|.+++..|..+..+++|+.|++++|+++++
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence            99999999999877788899999999999999998763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-31  Score=216.56  Aligned_cols=250  Identities=19%  Similarity=0.164  Sum_probs=134.8

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      +++++++++++.++ .+|..+|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45555666555555 55555555556666666666555544444555555566666665555544444455555566666


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC--------------------
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS--------------------  142 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------  142 (258)
                      +++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+......                    
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~  203 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  203 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence            655555533333345555555555555555544444455555555555555544321100                    


Q ss_pred             ------------------CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeC
Q 035481          143 ------------------LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG  204 (258)
Q Consensus       143 ------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  204 (258)
                                        ....++|+.+++++|.+++.  ..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus       204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred             CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence                              00112344444444444432  3445556666666666666555555666666666666666


Q ss_pred             CeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          205 NYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       205 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      |++.+ .+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus       282 n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~  332 (390)
T 3o6n_A          282 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  332 (390)
T ss_dssp             SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence            66653 2333445566666666666665 455555566666666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.5e-31  Score=227.76  Aligned_cols=251  Identities=22%  Similarity=0.203  Sum_probs=109.9

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccC-CcccCCCCCccEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKM-TDGLLSSTLLEVL   81 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l   81 (258)
                      ++|++|++++|.++ .+|.. +.++++|++|++++|.+....+..+..+++|++|++++|.+.... ...+..+++|+++
T Consensus       278 ~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          278 SGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            34444444444444 34333 233444444444444444333334444444444444444333111 2223444444444


Q ss_pred             EccCccccCCC--CCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec--CCCCCcCCCcEEEeecc
Q 035481           82 NVSNNKLSGDI--PHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM--VSLSNLSSVEHIYLHNN  157 (258)
Q Consensus        82 ~l~~~~~~~~~--~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~  157 (258)
                      ++++|.+....  +..+..+++|+++++.+|.+.+..+..+..+++|+.|++++|.+....  ..+..+++|+++++++|
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  435 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS  435 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence            44444443222  333444455555555544444343444444445555555544443321  11334444445555444


Q ss_pred             cccccCccchhcCCCceEEEccCCcccC---CCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecC
Q 035481          158 AINGLIPIALLRSSTLLTLDLRDNKLFG---RIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP  234 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~  234 (258)
                      .+....+..+..+++|++|++++|.+..   ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus       436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  515 (606)
T 3t6q_A          436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS  515 (606)
T ss_dssp             CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred             ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence            4444444444444444444444444432   1112344444444444444444444444444444444444444444444


Q ss_pred             CCcccccccchhhhhhcccccC
Q 035481          235 IPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       235 ~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      .|..+..++.| .|++++|+++
T Consensus       516 ~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          516 SIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             GGGGGTTCCSC-EEECCSSCCC
T ss_pred             ChhHhCccccc-EEECcCCccc
Confidence            44444444444 4444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=2.2e-31  Score=210.66  Aligned_cols=246  Identities=20%  Similarity=0.224  Sum_probs=136.7

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      +++++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++. .+..+  .++|++++
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~--~~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEE
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhh--cccccEEE
Confidence            34566666666665 4555555666666666666666655555556666666666666665552 22222  14566666


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccC--CcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQG--SIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      +++|.+....+..+..+++|+.+++.+|.+..  ..+..+..+++|+.|++++|.+...+..+.  ++|+++++++|.++
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence            66655554444445556666666666655532  334445555666666666665554443332  55666666666655


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG  240 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~  240 (258)
                      +..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.
T Consensus       206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            555555556666666666666655444445555666666666666555 4455555566666666666666533233332


Q ss_pred             c------ccchhhhhhccccc
Q 035481          241 N------VSSWREVIDDYSLL  255 (258)
Q Consensus       241 ~------l~~L~~l~l~~~~~  255 (258)
                      .      .++++.+++.+|++
T Consensus       285 ~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          285 PPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CSSCCTTSCCCSEEECCSSSS
T ss_pred             CcccccccccccceEeecCcc
Confidence            2      24555555555555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=3.2e-31  Score=209.72  Aligned_cols=244  Identities=22%  Similarity=0.245  Sum_probs=214.7

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      +++.++++++.++ .+|...   .++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            6889999999998 788655   478999999999999887778999999999999999998777888999999999999


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee---ecCCCCCcCCCcEEEeeccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      ++|.+. .++..+.  ++|++|++.+|.+.+..+..+..+++|+.|+++.|.+..   .+..+..+++|+++++++|.++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            999988 4555443  799999999999987777778999999999999998863   3456778899999999999988


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG  240 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~  240 (258)
                      ..... +  .++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.
T Consensus       185 ~l~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          185 TIPQG-L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             SCCSS-C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             cCCcc-c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence            65432 2  279999999999998777889999999999999999999887888999999999999999998 7899999


Q ss_pred             cccchhhhhhcccccCCC
Q 035481          241 NVSSWREVIDDYSLLSGF  258 (258)
Q Consensus       241 ~l~~L~~l~l~~~~~~~~  258 (258)
                      .+++|+.|++++|+|+++
T Consensus       261 ~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             TCSSCCEEECCSSCCCCC
T ss_pred             cCCCcCEEECCCCcCCcc
Confidence            999999999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=3.9e-32  Score=213.19  Aligned_cols=228  Identities=25%  Similarity=0.323  Sum_probs=209.2

Q ss_pred             CCccEEECCCCcccc--ccCccccCCcccceeeccc-ccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481           28 PSLETLDLSNNNFYG--QLFPNYMNLTHLRSLLLDN-NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV  104 (258)
Q Consensus        28 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  104 (258)
                      .+++.|+++++.+.+  ..+..|.++++|++|++++ +.+....+..+..+++|++|++++|.+....|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            689999999999987  7788999999999999995 8888778888999999999999999998788888999999999


Q ss_pred             EEecCccccCCcCccccCCCCccEEEcccccce-eecCCCCCcC-CCcEEEeecccccccCccchhcCCCceEEEccCCc
Q 035481          105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLS-GSMVSLSNLS-SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK  182 (258)
Q Consensus       105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  182 (258)
                      |++.+|.+.+..|..+..+++|+.|++++|.+. ..+..+..++ .|+++++++|.+++..+..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999999888999999999999999999998 5667787777 999999999999988888888887 9999999999


Q ss_pred             ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      +....+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence            9888889999999999999999999865554 7888999999999999998999999999999999999999975

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.98  E-value=1.9e-31  Score=227.21  Aligned_cols=255  Identities=23%  Similarity=0.176  Sum_probs=224.1

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCcccc-ccCccccCCcccceeecccccccccC--CcccCCCCC
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-QLFPNYMNLTHLRSLLLDNNNFSGKM--TDGLLSSTL   77 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~   77 (258)
                      ++++|++|++++|.++ .++...+.++++|++|++++|.+.. .....+..+++|++|++++|.++...  +..+..+++
T Consensus       299 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  377 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH  377 (606)
T ss_dssp             SCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred             ccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence            3689999999999998 6666677899999999999998863 34455889999999999999987554  667889999


Q ss_pred             ccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCc-cccCCCCccEEEcccccceee-cCCCCCcCCCcEEEee
Q 035481           78 LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV-QLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLH  155 (258)
Q Consensus        78 L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~  155 (258)
                      |+++++++|.+....+..+..+++|+.+++.+|.+.+..+. .+..+++|+.|++++|.+... +..+..+++|++++++
T Consensus       378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  457 (606)
T 3t6q_A          378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ  457 (606)
T ss_dssp             CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence            99999999998877788899999999999999998766544 488899999999999998764 4567789999999999


Q ss_pred             ccccccc---CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          156 NNAINGL---IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       156 ~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      +|.+++.   .+..+..+++|++|++++|.++...+..+..+++|++|++++|++.+..|..+.+++.| +|++++|.++
T Consensus       458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred             CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence            9998752   23568889999999999999988888899999999999999999998889999999999 9999999999


Q ss_pred             cCCCcccccccchhhhhhcccccCC
Q 035481          233 GPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       233 ~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      +..|..+..+++|+.|++++|++++
T Consensus       537 ~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          537 IILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             ccCHhhcccCCCCCEEeCCCCCccc
Confidence            7777789999999999999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=3.4e-31  Score=214.14  Aligned_cols=229  Identities=16%  Similarity=0.112  Sum_probs=187.7

Q ss_pred             CCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEE
Q 035481           27 CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL  106 (258)
Q Consensus        27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~  106 (258)
                      +++++.++++++.+..+.+..|..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            58899999999999877766688899999999999999877777899999999999999999977778889999999999


Q ss_pred             ecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccccCccchhc----------------
Q 035481          107 MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLR----------------  169 (258)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~----------------  169 (258)
                      +.+|.+....+..+..+++|+.|++++|.+.... ..+..+++|++|++++|.++......+..                
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~  203 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  203 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence            9999998555555788999999999999998764 45778899999999999887542222211                


Q ss_pred             ---------------------CCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccC
Q 035481          170 ---------------------SSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH  228 (258)
Q Consensus       170 ---------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~  228 (258)
                                           .++|+.|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus       204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred             CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence                                 12455555555555422  4677888999999999998877788888999999999999


Q ss_pred             ceeecCCCcccccccchhhhhhcccccCCC
Q 035481          229 NRLNGPIPSCLGNVSSWREVIDDYSLLSGF  258 (258)
Q Consensus       229 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  258 (258)
                      |.++ .++..+..+++|+.|++++|+++++
T Consensus       282 n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~  310 (390)
T 3o6n_A          282 NRLV-ALNLYGQPIPTLKVLDLSHNHLLHV  310 (390)
T ss_dssp             SCCC-EEECSSSCCTTCCEEECCSSCCCCC
T ss_pred             CcCc-ccCcccCCCCCCCEEECCCCcceec
Confidence            9987 4676777889999999999988753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=2e-31  Score=208.75  Aligned_cols=227  Identities=21%  Similarity=0.236  Sum_probs=107.1

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCcccccc--CccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQL--FPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +|++|++++++++ .++..+|.++++|++|++++|.+....  +..+..+++|++|++++|.+. ..+..+..+++|+++
T Consensus        29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            4455555555554 444444445555555555555443221  233334445555555555444 222334444555555


Q ss_pred             EccCccccCCCC-CcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee--ecCCCCCcCCCcEEEeeccc
Q 035481           82 NVSNNKLSGDIP-HWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNA  158 (258)
Q Consensus        82 ~l~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~  158 (258)
                      ++++|.+....+ ..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+.+  .+..+..+++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            555554442222 234444555555555554444444444444555555555554432  33344444555555555555


Q ss_pred             ccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCC-cccEEEccCceee
Q 035481          159 INGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLR-KLGIMDLSHNRLN  232 (258)
Q Consensus       159 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~l~l~~~~~~  232 (258)
                      +++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.++
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            5444444444455555555555554443333444445555555555555444444444442 4555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.6e-31  Score=208.97  Aligned_cols=245  Identities=24%  Similarity=0.269  Sum_probs=121.8

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      ++++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++. .+..+.  ++|+++++
T Consensus        55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRI  130 (332)
T ss_dssp             TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEEC
Confidence            4555555555555 4444445555555555555555554445555555555555555555542 222221  45555555


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccC--CcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQG--SIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      ++|.+....+..+..+++|+.+++.+|.+..  ..+..+..+ +|+.|++++|.+...+..+.  ++|++|++++|.+++
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~  207 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA  207 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCc
Confidence            5555553333345555555555555555431  223333333 44444444444433322221  345555555555554


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccccc
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN  241 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~  241 (258)
                      ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+++..+..|..
T Consensus       208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            44444555555555555555555444445555555555555555554 34444555555555555555555332233332


Q ss_pred             ------ccchhhhhhcccccC
Q 035481          242 ------VSSWREVIDDYSLLS  256 (258)
Q Consensus       242 ------l~~L~~l~l~~~~~~  256 (258)
                            .++|+.|++.+|+++
T Consensus       287 ~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          287 VGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSCCSSSCCBSEEECCSSSSC
T ss_pred             cccccccccccceEeecCccc
Confidence                  234555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.3e-31  Score=226.01  Aligned_cols=250  Identities=19%  Similarity=0.177  Sum_probs=138.9

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++++.++++++.+. .+|..+|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            44555666666555 55555555566666666666655555445555566666666666655544444555556666666


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC-------------------
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL-------------------  143 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------  143 (258)
                      +++|.+....+..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|.+...+...                   
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~  209 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  209 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence            6666555333333455566666666666555555555555555555555555543321000                   


Q ss_pred             -------------------CCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeC
Q 035481          144 -------------------SNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG  204 (258)
Q Consensus       144 -------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  204 (258)
                                         ...++|+.|++++|.+++  +..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus       210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred             CchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence                               001234444444444443  23455566666666666666555556666666666666666


Q ss_pred             CeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          205 NYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       205 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      |.+.+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++
T Consensus       288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~  338 (597)
T 3oja_B          288 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT  338 (597)
T ss_dssp             SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred             CCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence            66653 3344445566666666666665 455555666666666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=7.4e-31  Score=223.55  Aligned_cols=108  Identities=24%  Similarity=0.287  Sum_probs=60.0

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|
T Consensus        55 l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           55 FSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL  133 (606)
T ss_dssp             CTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred             CccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence            456666666666665 4544555666666666666666655555556666666666666665554443445555555555


Q ss_pred             EccCccccC-CCCCcCCCCCccceEEecCc
Q 035481           82 NVSNNKLSG-DIPHWIGNFSGLWVLLMSEN  110 (258)
Q Consensus        82 ~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~  110 (258)
                      ++++|.+.. ..|..+.++++|++|++.+|
T Consensus       134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             ECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             eCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            555555442 23444555555555554444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=213.27  Aligned_cols=246  Identities=20%  Similarity=0.163  Sum_probs=204.5

Q ss_pred             ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      .+.++.++.+++ .+|..+   .++++.|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456777888887 788765   3678899999999888777888889999999999998887777788888999999999


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccc-cceeecC-CCCCcCCCcEEEeeccccccc
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN-SLSGSMV-SLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      +|.++...+..+..+++|++|++.+|.+....+..+..+++|+.|+++++ .+...+. .+..+++|++|++++|.++..
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            99888666667888999999999999888666667888899999999884 4444443 567888999999999988754


Q ss_pred             CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccc
Q 035481          163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV  242 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l  242 (258)
                      .  .+..+++|++|++++|.++...+..+..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++..+..|..+
T Consensus       201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            3  46778899999999999887778888899999999999999988888888899999999999999986555678889


Q ss_pred             cchhhhhhcccccC
Q 035481          243 SSWREVIDDYSLLS  256 (258)
Q Consensus       243 ~~L~~l~l~~~~~~  256 (258)
                      ++|+.|++++|++.
T Consensus       279 ~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          279 HHLERIHLHHNPWN  292 (440)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEcCCCCcc
Confidence            99999999998874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=6.2e-31  Score=205.97  Aligned_cols=247  Identities=21%  Similarity=0.179  Sum_probs=214.6

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccC--CcccCCCCCccEEEc
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKM--TDGLLSSTLLEVLNV   83 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~l~l   83 (258)
                      +.++.++++++ .+|..+   .+++++|++++|.+..+....|.++++|++|++++|.++...  +..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            46888888898 788765   468999999999998776667899999999999999887332  445667899999999


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      ++|.+. ..+..+..+++|++|++.+|.+.+..+ ..+..+++|+.|++++|.+.... ..+..+++|++|++++|.+++
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            999988 456668889999999999999885544 57888999999999999997654 457788999999999999876


Q ss_pred             -cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481          162 -LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG  240 (258)
Q Consensus       162 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~  240 (258)
                       ..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence             5677888999999999999999877788899999999999999999977777889999999999999999988888899


Q ss_pred             ccc-chhhhhhcccccCC
Q 035481          241 NVS-SWREVIDDYSLLSG  257 (258)
Q Consensus       241 ~l~-~L~~l~l~~~~~~~  257 (258)
                      .++ +|+.|++++|++++
T Consensus       245 ~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCCTTCCEEECTTCCEEC
T ss_pred             hhhccCCEEEccCCCeec
Confidence            985 99999999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.6e-31  Score=208.43  Aligned_cols=243  Identities=23%  Similarity=0.265  Sum_probs=212.6

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      +++.++++++.++ .+|..+   .++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            6899999999998 888765   478999999999998877788999999999999999998777888999999999999


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee---ecCCCCCcCCCcEEEeeccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      ++|.+. .++..+.  ++|++|++.+|.+....+..+..+++|+.|++++|.+..   .+..+... +|+++++++|.++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            999988 5555443  899999999999987766778999999999999999864   33445555 8999999999998


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG  240 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~  240 (258)
                      .... .+  .++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.
T Consensus       186 ~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          186 GIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             SCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             ccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence            6433 22  279999999999998777788999999999999999999877788999999999999999998 7898999


Q ss_pred             cccchhhhhhcccccCCC
Q 035481          241 NVSSWREVIDDYSLLSGF  258 (258)
Q Consensus       241 ~l~~L~~l~l~~~~~~~~  258 (258)
                      .+++|+.|++++|+|+++
T Consensus       262 ~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             GCTTCCEEECCSSCCCBC
T ss_pred             cCccCCEEECCCCCCCcc
Confidence            999999999999999763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=2e-30  Score=213.48  Aligned_cols=246  Identities=19%  Similarity=0.143  Sum_probs=203.9

Q ss_pred             ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      .+.++.++.+++ .+|..+   .+++++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456777888887 777665   3688899999999888878888889999999999998887777788888999999999


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccc-cceeecC-CCCCcCCCcEEEeeccccccc
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN-SLSGSMV-SLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      +|.+....+..+..+++|++|++.+|.+....+..+..+++|+.|+++.+ .+...+. .+..+++|++|++++|.+++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99888666667888999999999999888666667888899999999884 4444443 467888999999999988755


Q ss_pred             CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccc
Q 035481          163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV  242 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l  242 (258)
                        ..+..+++|++|++++|.+....+..+..+++|+.|++++|++.+..+..+..+++|++|+|++|.+++..+..+..+
T Consensus       212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence              346778899999999999887778888899999999999999888888888889999999999999986555678889


Q ss_pred             cchhhhhhcccccC
Q 035481          243 SSWREVIDDYSLLS  256 (258)
Q Consensus       243 ~~L~~l~l~~~~~~  256 (258)
                      ++|+.|++++|++.
T Consensus       290 ~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          290 RYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEccCCCcC
Confidence            99999999998874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=3.7e-31  Score=211.22  Aligned_cols=252  Identities=21%  Similarity=0.225  Sum_probs=136.4

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      +|++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|+++++
T Consensus        53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            4555555555554 444444455555555555555555444444555555555555555554333333445555555555


Q ss_pred             cCccccCCCC-CcCCCCCccceEEecCcc-ccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeeccccc
Q 035481           84 SNNKLSGDIP-HWIGNFSGLWVLLMSENY-LQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        84 ~~~~~~~~~~-~~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      ++|.+..... ..+..+++|+.+++.+|. +....+..+..+++|+.|++++|.+... +..+..+++|+++++++|.+.
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            5555542222 244455555555555542 3323334445555555555555555443 334445555555555555544


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhh---ccCCCccEEEeeCCeecc----cCCccccCCCcccEEEccCceeec
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQI---NELSNLHFLLLRGNYLQG----RIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      ......+..+++|+.|++++|.+....+..+   ...+.++.++++++.+.+    .+|..+..+++|++|++++|.++ 
T Consensus       212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-  290 (353)
T 2z80_A          212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-  290 (353)
T ss_dssp             THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred             cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence            3333333344555555555555543222211   123444555555544432    23456778899999999999998 


Q ss_pred             CCCcc-cccccchhhhhhcccccCC
Q 035481          234 PIPSC-LGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       234 ~~~~~-~~~l~~L~~l~l~~~~~~~  257 (258)
                      .+|.. |..+++|+.|++++|++++
T Consensus       291 ~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          291 SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            57765 5899999999999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=7.7e-31  Score=222.75  Aligned_cols=249  Identities=18%  Similarity=0.192  Sum_probs=205.9

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|
T Consensus        74 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           74 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            678999999999998 6777778899999999999999988877888999999999999999986666667889999999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccC----------------C---------------------C
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN----------------L---------------------V  124 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~----------------~---------------------~  124 (258)
                      ++++|.+....+..+..+++|+.|++.+|.+.+.....+..                .                     +
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~  232 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV  232 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence            99999998777778889999999999998876442222211                1                     2


Q ss_pred             CccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeC
Q 035481          125 CLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG  204 (258)
Q Consensus       125 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  204 (258)
                      +|+.|++++|.+.. +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++. ++..+..+++|+.|++++
T Consensus       233 ~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          233 ELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence            34445555555443 2456688999999999999998888899999999999999999874 466667789999999999


Q ss_pred             CeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          205 NYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       205 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      |.+. .+|..+..+++|+.|++++|.+++ ++  +..+++|+.|++++|++++
T Consensus       311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          311 NHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred             CCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence            9998 567778889999999999999984 44  7789999999999999863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=4e-30  Score=199.38  Aligned_cols=223  Identities=22%  Similarity=0.269  Sum_probs=183.4

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccC
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSN   85 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   85 (258)
                      ++++.+++.++ .+|...   .+++++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56788888887 677654   56888899999888877777788888899999998888876677788888899999988


Q ss_pred             cc-ccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccccC
Q 035481           86 NK-LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLI  163 (258)
Q Consensus        86 ~~-~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~  163 (258)
                      |. +....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...+.. +..+++|++|++++|.++...
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            86 6655577788888999999988888877677788888899999988888776543 667888999999998888777


Q ss_pred             ccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          164 PIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            777888889999999999887777888888889999999999888666667888888999999988876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.8e-30  Score=204.88  Aligned_cols=227  Identities=20%  Similarity=0.258  Sum_probs=182.2

Q ss_pred             CCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEE
Q 035481           27 CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL  106 (258)
Q Consensus        27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~  106 (258)
                      .++++.|++++|.+. ..+..+..+++|++|++++|.++ ..+..+..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467778888887776 34555666778888888888777 56666777788888888887777 6677777788888888


Q ss_pred             ecCccccCCcCcccc---------CCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEE
Q 035481          107 MSENYLQGSIPVQLG---------NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD  177 (258)
Q Consensus       107 l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~  177 (258)
                      +.+|...+..|..+.         .+++|+.|++++|.+..++..+..+++|++|++++|.+++. +..+..+++|++|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEE
Confidence            877766666665554         38889999998888887777788888999999999988854 44678888999999


Q ss_pred             ccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          178 LRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      +++|.+....|..+..+++|++|++++|.+.+..|..+..+++|++|+|++|.+.+.+|+.++.+++|+.+.+..+.+..
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            99988888888888889999999999988888888888899999999999998888899999999999988888776643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=9.1e-30  Score=197.35  Aligned_cols=250  Identities=20%  Similarity=0.167  Sum_probs=207.6

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccc-ccccCCcccCCCCCccEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN-FSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l   81 (258)
                      ++|++|+++++.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|. +....+..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            57999999999998 7887788999999999999999988878889999999999999997 776667788899999999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEeeccccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~  160 (258)
                      ++++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...+. .+..+++|++|++++|.++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            999999987777888899999999999999986666678889999999999999988765 4778999999999999999


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG  240 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~  240 (258)
                      +..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+. ..-...++.+..+.+.+....|+.+.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhC
Confidence            88888899999999999999999877767789999999999999988743211 11112355556667777777787665


Q ss_pred             c--ccchhhhhhcccc
Q 035481          241 N--VSSWREVIDDYSL  254 (258)
Q Consensus       241 ~--l~~L~~l~l~~~~  254 (258)
                      +  +..++..++.+|+
T Consensus       270 g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          270 GRDLKRLAANDLQGCA  285 (285)
T ss_dssp             TCBGGGSCGGGSCCC-
T ss_pred             CcChhhcCHHHhccCC
Confidence            4  5566666677663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=218.13  Aligned_cols=108  Identities=25%  Similarity=0.334  Sum_probs=58.7

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++......+..+++|++|
T Consensus        51 l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A           51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (570)
T ss_dssp             CSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred             CCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence            456666666666665 4555556666666666666666655554555555555555555555543333334455555555


Q ss_pred             EccCccccC-CCCCcCCCCCccceEEecCc
Q 035481           82 NVSNNKLSG-DIPHWIGNFSGLWVLLMSEN  110 (258)
Q Consensus        82 ~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~  110 (258)
                      ++++|.+.. ..|..+.++++|++|++.+|
T Consensus       130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             ecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            555554442 23444444455554444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.4e-30  Score=222.48  Aligned_cols=248  Identities=21%  Similarity=0.182  Sum_probs=144.3

Q ss_pred             CCcceEEecCcCccccccCc-ccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCC-cc
Q 035481            2 MKELITLDLSRNNFSGELSR-PIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTL-LE   79 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~   79 (258)
                      +++|++|++++|+++ .+|. ..+.++++|++|++++|.+.+..+ .|..+++|++|++++|.++ ..+..+..+++ |+
T Consensus       304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~  380 (636)
T 4eco_A          304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE  380 (636)
T ss_dssp             GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred             CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence            367777777777777 6665 345777778888888777764444 6666777777777777766 45555666666 77


Q ss_pred             EEEccCccccCCCCCcCCCCC--ccceEEecCccccCCcCcccc-------CCCCccEEEcccccceeecCCCC-CcCCC
Q 035481           80 VLNVSNNKLSGDIPHWIGNFS--GLWVLLMSENYLQGSIPVQLG-------NLVCLEFIDISENSLSGSMVSLS-NLSSV  149 (258)
Q Consensus        80 ~l~l~~~~~~~~~~~~l~~l~--~L~~l~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~-~~~~L  149 (258)
                      +|++++|.+. .+|..+..+.  +|+.+++.+|.+.+..|..+.       .+++|+.|++++|.+..++..+. .+++|
T Consensus       381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L  459 (636)
T 4eco_A          381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL  459 (636)
T ss_dssp             EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred             EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence            7777777766 5555554433  666666666666655555555       45566666666666554443322 34555


Q ss_pred             cEEEeecccccccCccchhcCC-------CceEEEccCCcccCCCChhhc--cCCCccEEEeeCCeecccCCccccCCCc
Q 035481          150 EHIYLHNNAINGLIPIALLRSS-------TLLTLDLRDNKLFGRIPHQIN--ELSNLHFLLLRGNYLQGRIPNQLCQLRK  220 (258)
Q Consensus       150 ~~l~l~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~  220 (258)
                      ++|++++|.++......+....       +|+.|++++|.++ .+|..+.  .+++|+.|++++|++.+ +|..+..+++
T Consensus       460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred             CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence            5555555555533322222221       5555555555554 3444443  55555555555555553 4555555555


Q ss_pred             ccEEEc------cCceeecCCCcccccccchhhhhhccccc
Q 035481          221 LGIMDL------SHNRLNGPIPSCLGNVSSWREVIDDYSLL  255 (258)
Q Consensus       221 L~~l~l------~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  255 (258)
                      |++|++      ++|.+.+.+|..+..+++|+.|++++|++
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            555555      23444445555555555555555555555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=4.5e-30  Score=221.45  Aligned_cols=254  Identities=20%  Similarity=0.185  Sum_probs=161.7

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      +++++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++++
T Consensus        25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            46788888888887 67777778888888888888888777777777888888888888887755555677788888888


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC---CCCcCCCcEEEeecccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS---LSNLSSVEHIYLHNNAI  159 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~l~l~~~~~  159 (258)
                      +++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+......   ...+++|+++++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            888877755556777788888888888877766666777777888888877776543321   12345666666666655


Q ss_pred             cccCccc---------------------------------------------------hhcCC--CceEEEccCCcccCC
Q 035481          160 NGLIPIA---------------------------------------------------LLRSS--TLLTLDLRDNKLFGR  186 (258)
Q Consensus       160 ~~~~~~~---------------------------------------------------~~~~~--~L~~L~l~~~~~~~~  186 (258)
                      ++..+..                                                   +..++  +|++|++++|.+...
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            4443333                                                   22222  244555555544434


Q ss_pred             CChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec-----CCCc----ccccccchhhhhhcccccCC
Q 035481          187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG-----PIPS----CLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       187 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-----~~~~----~~~~l~~L~~l~l~~~~~~~  257 (258)
                      .+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|...+     .+|.    .+..+++|+.|++++|.+++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            44444455555555555555544444455555555555555443221     1121    45566666677777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=208.35  Aligned_cols=228  Identities=19%  Similarity=0.176  Sum_probs=205.8

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++++.|++++|+++ .++...|.++++|++|++++|.+..+.+..|.++++|++|++++|.++...+..+..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            46899999999998 77878889999999999999999888888999999999999999999877777889999999999


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCcc-ccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENY-LQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      +++|.+....+..+..+++|+.|++.++. +....+..+..+++|+.|++++|.+..++ .+..+++|++|++++|.+++
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc
Confidence            99999986667788999999999999854 44344457889999999999999998765 57788999999999999998


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++++..+..+..+++|+.|+|++|.+.
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            88899999999999999999998888889999999999999999999877888899999999999999986

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=1.5e-29  Score=208.20  Aligned_cols=228  Identities=20%  Similarity=0.171  Sum_probs=205.6

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      +++++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            47999999999998 67777889999999999999999988888999999999999999999877777788999999999


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCc-cccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSEN-YLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      +++|.+....+..+..+++|+.|++.++ .+....+..+..+++|+.|++++|.+...+ .+..+++|++|++++|.+++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcc
Confidence            9999998666678899999999999985 444344456888999999999999998764 57788999999999999998


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+..+++|++|+|++|.+.
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            88899999999999999999998888889999999999999999999777788899999999999999986

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=5.8e-30  Score=225.17  Aligned_cols=111  Identities=22%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             CCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEc
Q 035481          147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL  226 (258)
Q Consensus       147 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l  226 (258)
                      ++++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            45666666666666555666677777777777777776666677777788888888888777666777778888888888


Q ss_pred             cCceeecCCCcccccccchhhhhhcccccCC
Q 035481          227 SHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ++|.+.+..+..|..+++|+.|++++|.+++
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            8888775555667788888888888888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=4.9e-30  Score=219.08  Aligned_cols=247  Identities=17%  Similarity=0.155  Sum_probs=212.4

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcc-cceeecccccccccCCcccCCCC--C
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTH-LRSLLLDNNNFSGKMTDGLLSST--L   77 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~--~   77 (258)
                      ++++|++|++++|.++|.+|  .|.++++|++|++++|.+. ..+..+..+++ |++|++++|.++ ..+..+....  +
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            47889999999999998888  5788999999999999998 56677888999 999999999998 5666666554  8


Q ss_pred             ccEEEccCccccCCCCCcCC-------CCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCC-----
Q 035481           78 LEVLNVSNNKLSGDIPHWIG-------NFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSN-----  145 (258)
Q Consensus        78 L~~l~l~~~~~~~~~~~~l~-------~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----  145 (258)
                      |+++++++|.+....|..+.       .+++|+.|++.+|.+....+..+..+++|+.|++++|.+..++.....     
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~  483 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN  483 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence            99999999999877777777       788999999999999854444566789999999999999876655443     


Q ss_pred             ---cCCCcEEEeecccccccCccchh--cCCCceEEEccCCcccCCCChhhccCCCccEEEee------CCeecccCCcc
Q 035481          146 ---LSSVEHIYLHNNAINGLIPIALL--RSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR------GNYLQGRIPNQ  214 (258)
Q Consensus       146 ---~~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~~~l~~~~~~~  214 (258)
                         +++|+.|++++|.++. ++..+.  .+++|+.|++++|.++. +|..+..+++|++|+++      +|.+.+.+|..
T Consensus       484 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~  561 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG  561 (636)
T ss_dssp             CTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred             ccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence               2389999999999984 556665  89999999999999986 78889999999999994      57777888999


Q ss_pred             ccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481          215 LCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       215 l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +..+++|++|++++|.++ .+|..+.  ++|+.|++++|+++
T Consensus       562 l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          562 ITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             GGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred             HhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence            999999999999999994 7898765  89999999999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=1.9e-29  Score=217.49  Aligned_cols=255  Identities=23%  Similarity=0.234  Sum_probs=127.5

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccc--cccCccccC--CcccceeecccccccccCCcccCCCCC
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY--GQLFPNYMN--LTHLRSLLLDNNNFSGKMTDGLLSSTL   77 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~   77 (258)
                      +++|++|++++|.++ .++...|.++++|++|++++|.+.  ......|..  .+.|+.|++++|.++...+.++..+++
T Consensus       328 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             CTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            456666666666666 455555666666666666665421  111112221  134555555555555444455555666


Q ss_pred             ccEEEccCccccCCCC-CcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee---ecCCCCCcCCCcEEE
Q 035481           78 LEVLNVSNNKLSGDIP-HWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SMVSLSNLSSVEHIY  153 (258)
Q Consensus        78 L~~l~l~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~  153 (258)
                      |+.+++++|.+....+ ..+..+++|+.+++.+|.+.+..+..+..+++|+.|++.+|.+..   .+..+..+++|+.++
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~  486 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD  486 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred             CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence            6666666665543222 345555556666665555544444444445555555555544431   233444555555555


Q ss_pred             eecccccccCccchhcCCCceEEEccCCcccCCCC--------hhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481          154 LHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIP--------HQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD  225 (258)
Q Consensus       154 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~  225 (258)
                      +++|.++...+..+..+++|++|++++|.++....        ..+.++++|++|++++|++.+..+..|..+++|++|+
T Consensus       487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~  566 (680)
T 1ziw_A          487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID  566 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence            55555554444445555555555555555432111        1234445555555555555433333455555555555


Q ss_pred             ccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          226 LSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       226 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      +++|.+++..+..|..+++|+.|++++|++++
T Consensus       567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            55555553222334455555555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.2e-29  Score=202.06  Aligned_cols=241  Identities=24%  Similarity=0.306  Sum_probs=157.7

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      ++++|++|++++|.++ .++  .+.++++|++|++++|.+....+  +..+++|++|++++|..... ...+..+++|++
T Consensus        86 ~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~  159 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKIT-DIS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNY  159 (347)
T ss_dssp             TCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCE
T ss_pred             cCCcCCEEEccCCccc-Cch--HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcE
Confidence            3678888888888887 454  36778888888888888764432  66777777777777744322 233556666666


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecCccccCCcC--------------------ccccCCCCccEEEcccccceeec
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP--------------------VQLGNLVCLEFIDISENSLSGSM  140 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~  140 (258)
                      ++++++.+....+  +..+++|+.+++.+|.+.+..+                    ..+..+++|+.|++++|.+...+
T Consensus       160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~  237 (347)
T 4fmz_A          160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS  237 (347)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             EEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc
Confidence            6666665542211  4455555555555555442211                    11455566666777666665544


Q ss_pred             CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCc
Q 035481          141 VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK  220 (258)
Q Consensus       141 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  220 (258)
                      . +..+++|+++++++|.+++.  ..+..+++|++|++++|.+...  ..+..+++|+.|++++|.+.+..+..+..+++
T Consensus       238 ~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          238 P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence            4 56667777777777776643  3466777777777777777543  45677788888888888777666777777888


Q ss_pred             ccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481          221 LGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       221 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      |++|++++|.+++..|  +..+++|+.|++++|+|+
T Consensus       313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888888774333  777888888888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.6e-29  Score=201.24  Aligned_cols=242  Identities=23%  Similarity=0.328  Sum_probs=184.5

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      .+++|++|++++|.++ .++.  +.++++|++|++++|.+...  +.+..+++|++|++++|.+....+  +..+++|++
T Consensus        64 ~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~  136 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYS  136 (347)
T ss_dssp             GCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred             hcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeE
Confidence            3689999999999998 5665  78999999999999998753  568899999999999999875432  788999999


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC-------------------
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-------------------  141 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------  141 (258)
                      +++++|..... ...+..+++|+.+++.++.+.+..+  +..+++|+.|++++|.+.....                   
T Consensus       137 L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  213 (347)
T 4fmz_A          137 LNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD  213 (347)
T ss_dssp             EECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             EECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC
Confidence            99999966533 3458899999999999999874433  7788899999999888765432                   


Q ss_pred             --CCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCC
Q 035481          142 --SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLR  219 (258)
Q Consensus       142 --~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  219 (258)
                        .+..+++|+++++++|.+++..+  +..+++|++|++++|.++..  ..+..+++|++|++++|.+.+.  ..+..++
T Consensus       214 ~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~  287 (347)
T 4fmz_A          214 ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLS  287 (347)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             CchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCC
Confidence              13344556666666666554332  56667777777777766532  4566777888888888877643  4567778


Q ss_pred             cccEEEccCceeecCCCcccccccchhhhhhcccccCCC
Q 035481          220 KLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF  258 (258)
Q Consensus       220 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  258 (258)
                      +|++|++++|.+++..+..+..+++|+.|++++|+++++
T Consensus       288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            888888888888766667788888888888888888763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.1e-29  Score=200.46  Aligned_cols=226  Identities=19%  Similarity=0.250  Sum_probs=205.2

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      .++++.|++++++++ .+|..++ ++++|++|++++|.+. ..+..+..+++|++|++++|.++ ..+..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            368999999999998 8888764 4999999999999998 66778899999999999999998 667789999999999


Q ss_pred             EccCccccCCCCCcCCC---------CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEE
Q 035481           82 NVSNNKLSGDIPHWIGN---------FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHI  152 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~---------l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l  152 (258)
                      ++++|......|..+..         +++|++|++.+|.++ .+|..+..+++|+.|++++|.+...+..+..+++|++|
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEE
Confidence            99998777677776654         999999999999998 77888999999999999999999888888899999999


Q ss_pred             EeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          153 YLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       153 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++++|.+.+..+..+..+++|++|++++|.+....|..+..+++|++|++++|.+.+.+|..+.++++++.+++..+.+.
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999998888889999999999999999998899999999999999999999999999999999999999999877664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=5.1e-30  Score=218.39  Aligned_cols=247  Identities=19%  Similarity=0.122  Sum_probs=188.8

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc--CCcccCCCCCccE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK--MTDGLLSSTLLEV   80 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~   80 (258)
                      ++|++|++++|.+. .+| . + .+++|++|++++|....  ...+..+++|++|++++|.++..  .+..+..+++|++
T Consensus       307 ~~L~~L~l~~n~l~-~lp-~-~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~  380 (606)
T 3vq2_A          307 FKWQSLSIIRCQLK-QFP-T-L-DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH  380 (606)
T ss_dssp             CCCSEEEEESCCCS-SCC-C-C-CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred             ccCCEEEcccccCc-ccc-c-C-CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence            45555555555553 454 2 2 45566666666553321  12455677777777777776543  2555667788888


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeeccc
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNA  158 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~  158 (258)
                      +++++|.+. ..+..+..+++|+.+++.+|.+.+..+ ..+..+++|+.|++++|.+.. .+..+..+++|+++++++|.
T Consensus       381 L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  459 (606)
T 3vq2_A          381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS  459 (606)
T ss_dssp             EECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             eECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence            888888776 355777888889999998888876665 577888899999999998876 44567788899999999998


Q ss_pred             ccc-cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481          159 ING-LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS  237 (258)
Q Consensus       159 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~  237 (258)
                      +++ ..+..+..+++|++|++++|.++...+..+..+++|++|++++|++.+..|..+..+++|++|++++|+++ .+|.
T Consensus       460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence            876 46777888899999999999988777888888999999999999998877888889999999999999988 6787


Q ss_pred             cccccc-chhhhhhcccccCC
Q 035481          238 CLGNVS-SWREVIDDYSLLSG  257 (258)
Q Consensus       238 ~~~~l~-~L~~l~l~~~~~~~  257 (258)
                      .+..++ +|+.|++++|+++.
T Consensus       539 ~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          539 ILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CGGGSCTTCCEEECCSCCCCC
T ss_pred             hHhhhcccCcEEEccCCCccc
Confidence            788887 59999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=9.6e-30  Score=223.78  Aligned_cols=256  Identities=20%  Similarity=0.192  Sum_probs=156.4

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcc--cCCCCCc
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDG--LLSSTLL   78 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L   78 (258)
                      ++++|++|++++|...+.++...|.++++|++|++++|.+....+..|.++++|++|++++|.+....+..  +..+++|
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            46788899998886555777777888899999999999888777888888889999999988887544433  7788888


Q ss_pred             cEEEccCccccCCCC-CcCCCCCccceEEecCccccCCcCccccCC--CCccEEEccccccee-ecCCCCCcC------C
Q 035481           79 EVLNVSNNKLSGDIP-HWIGNFSGLWVLLMSENYLQGSIPVQLGNL--VCLEFIDISENSLSG-SMVSLSNLS------S  148 (258)
Q Consensus        79 ~~l~l~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~~~~~~------~  148 (258)
                      ++|++++|.+....+ ..+.++++|++|++.+|.+.+..+..+..+  ++|+.|+++.|.+.. .+..+..++      .
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  205 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV  205 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence            888888888775443 467788888888888887765555544433  455555555554433 112222222      2


Q ss_pred             CcEEEeecccccccCccch------------------------------------hc--CCCceEEEccCCcccCCCChh
Q 035481          149 VEHIYLHNNAINGLIPIAL------------------------------------LR--SSTLLTLDLRDNKLFGRIPHQ  190 (258)
Q Consensus       149 L~~l~l~~~~~~~~~~~~~------------------------------------~~--~~~L~~L~l~~~~~~~~~~~~  190 (258)
                      |+.+++++|.++...+..+                                    ..  .++++.|++++|.+....+..
T Consensus       206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~  285 (844)
T 3j0a_A          206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV  285 (844)
T ss_dssp             BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred             eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence            4555555443321111111                                    00  134555555555554444444


Q ss_pred             hccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481          191 INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       191 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++
T Consensus       286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  351 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA  351 (844)
T ss_dssp             SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred             hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence            555555555555555555444455555555555555555555444445555555555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=211.40  Aligned_cols=247  Identities=21%  Similarity=0.192  Sum_probs=158.0

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++|++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++. .+..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEE
T ss_pred             ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEe
Confidence            46888888888887 5666667888888888888888877767778888888888888888773 3333  678888888


Q ss_pred             ccCccccC-CCCCcCCCCCccceEEecCccccCCcCccccCCCCc--cEEEcccccc--ee-ecCCCCC-----------
Q 035481           83 VSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCL--EFIDISENSL--SG-SMVSLSN-----------  145 (258)
Q Consensus        83 l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~~~~~-----------  145 (258)
                      +++|.+.. ..|..++.+++|++|++.+|.+.+   ..+..+++|  +.|++++|.+  .. .+..+..           
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            88888774 356677778888888777776542   122233333  4444444333  10 0000000           


Q ss_pred             ------------------------------------------------------------------------cCCCcEEE
Q 035481          146 ------------------------------------------------------------------------LSSVEHIY  153 (258)
Q Consensus       146 ------------------------------------------------------------------------~~~L~~l~  153 (258)
                                                                                              .++|++++
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence                                                                                    01344444


Q ss_pred             eecccccccCccch-----------------------------------------------------hcCCCceEEEccC
Q 035481          154 LHNNAINGLIPIAL-----------------------------------------------------LRSSTLLTLDLRD  180 (258)
Q Consensus       154 l~~~~~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~  180 (258)
                      +++|.+++..+..+                                                     ..+++|++|++++
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~  333 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN  333 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred             eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence            44443332211111                                                     4566777777777


Q ss_pred             CcccCCCChhhccCCCccEEEeeCCeecc--cCCccccCCCcccEEEccCceeecCCCcc-cccccchhhhhhcccccC
Q 035481          181 NKLFGRIPHQINELSNLHFLLLRGNYLQG--RIPNQLCQLRKLGIMDLSHNRLNGPIPSC-LGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~l~l~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~  256 (258)
                      |.++...+..+..+++|++|++++|++.+  ..|..+..+++|++|++++|.+++.+|.. +..+++|+.|++++|+++
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence            77766666677777777777777777764  33455677777777777777777545543 666777777777777664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=7.1e-29  Score=209.49  Aligned_cols=247  Identities=23%  Similarity=0.186  Sum_probs=150.5

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++|++|++++|.++ .++...|.++++|++|++++|.+....+.+|.++++|++|++++|.++. .+..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEE
Confidence            46777777777776 5666666777777777777777776666777777777777777777763 3333  567777777


Q ss_pred             ccCccccCC-CCCcCCCCCccceEEecCccccCCcCccccCCCCc--cEEEcccccc--eee-cCCCC------------
Q 035481           83 VSNNKLSGD-IPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCL--EFIDISENSL--SGS-MVSLS------------  144 (258)
Q Consensus        83 l~~~~~~~~-~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~-~~~~~------------  144 (258)
                      +++|.+... .|..+..+++|++|++.+|.+.+.   .+..+++|  +.|+++.|.+  ... +..+.            
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~  204 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH  204 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence            777777642 345677777777777777766532   22222333  5555555443  110 00000            


Q ss_pred             --------------C-------------------------------------------------------cCCCcEEEee
Q 035481          145 --------------N-------------------------------------------------------LSSVEHIYLH  155 (258)
Q Consensus       145 --------------~-------------------------------------------------------~~~L~~l~l~  155 (258)
                                    .                                                       .++|++++++
T Consensus       205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~  284 (562)
T 3a79_B          205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY  284 (562)
T ss_dssp             SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred             CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence                          0                                                       0144445555


Q ss_pred             cccccccCccch-----------------------------------------------------hcCCCceEEEccCCc
Q 035481          156 NNAINGLIPIAL-----------------------------------------------------LRSSTLLTLDLRDNK  182 (258)
Q Consensus       156 ~~~~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~  182 (258)
                      +|.+++..+..+                                                     ..+++|++|++++|.
T Consensus       285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~  364 (562)
T 3a79_B          285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV  364 (562)
T ss_dssp             EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred             ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence            554442222111                                                     455677777777777


Q ss_pred             ccCCCChhhccCCCccEEEeeCCeecccC--CccccCCCcccEEEccCceeecCCCc-ccccccchhhhhhcccccC
Q 035481          183 LFGRIPHQINELSNLHFLLLRGNYLQGRI--PNQLCQLRKLGIMDLSHNRLNGPIPS-CLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~  256 (258)
                      ++...+..+..+++|++|++++|++.+..  |..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|+++
T Consensus       365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT  441 (562)
T ss_dssp             CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred             cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence            76666666777777777777777776422  34566777777777777777653553 3666666666666666664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.2e-28  Score=214.79  Aligned_cols=244  Identities=18%  Similarity=0.125  Sum_probs=134.6

Q ss_pred             CCcceEEecCcCccccccCc-ccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCC-cc
Q 035481            2 MKELITLDLSRNNFSGELSR-PIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTL-LE   79 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~   79 (258)
                      +++|++|++++|.++ .+|. ..+.++++|+.|++++|.+. ..+ .|..+++|+.|++++|.+. ..+..+..+++ |+
T Consensus       547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred             cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence            457777777777777 6665 34577777888888877776 333 6777777777777777776 55556666666 77


Q ss_pred             EEEccCccccCCCCCcCCCCCc--cceEEecCccccCCcCc----------------------------c-ccCCCCccE
Q 035481           80 VLNVSNNKLSGDIPHWIGNFSG--LWVLLMSENYLQGSIPV----------------------------Q-LGNLVCLEF  128 (258)
Q Consensus        80 ~l~l~~~~~~~~~~~~l~~l~~--L~~l~l~~~~~~~~~~~----------------------------~-~~~~~~L~~  128 (258)
                      .|++++|.+. .+|..+..++.  |+.|++.+|.+.+..|.                            . +..+++|+.
T Consensus       623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~  701 (876)
T 4ecn_A          623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST  701 (876)
T ss_dssp             EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred             EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence            7777777766 55555444432  66666666555443321                            1 123344444


Q ss_pred             EEcccccceeecCCCCC--------cCCCcEEEeecccccccCccchh--cCCCceEEEccCCcccCCCChhhccCCCcc
Q 035481          129 IDISENSLSGSMVSLSN--------LSSVEHIYLHNNAINGLIPIALL--RSSTLLTLDLRDNKLFGRIPHQINELSNLH  198 (258)
Q Consensus       129 L~l~~~~~~~~~~~~~~--------~~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  198 (258)
                      |++++|.+..++..+..        +++|+.|++++|.++ .++..+.  .+++|+.|++++|.+.. +|..+..+++|+
T Consensus       702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~  779 (876)
T 4ecn_A          702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK  779 (876)
T ss_dssp             EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCC
T ss_pred             EECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCC
Confidence            44444444433322221        124555555555544 2233333  45555555555555543 344444555555


Q ss_pred             EEEeeC------CeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhccccc
Q 035481          199 FLLLRG------NYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLL  255 (258)
Q Consensus       199 ~L~l~~------~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~  255 (258)
                      .|++++      |.+.+.+|..+..+++|++|+|++|.+ +.+|..+.  ++|+.|++++|++
T Consensus       780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l  839 (876)
T 4ecn_A          780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN  839 (876)
T ss_dssp             EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred             EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence            555543      344444455555555555555555555 34554433  3555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=2.4e-28  Score=208.94  Aligned_cols=108  Identities=26%  Similarity=0.274  Sum_probs=60.3

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      ++++|+|++|+++ .++...|.++++|++|++++|.+..+.+.+|.++++|++|++++|+++...+.+|..+.+|++|++
T Consensus        53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4566666666665 555555566666666666666665555555566666666666666555444444555555555555


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYL  112 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  112 (258)
                      ++|.+....+..++.+++|++|++.+|.+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            55555533333444555555555554444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.6e-29  Score=210.40  Aligned_cols=145  Identities=22%  Similarity=0.273  Sum_probs=127.3

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccC
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSN   85 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~   85 (258)
                      +++++++++++ .+|..++   +++++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            57999999999 7997764   8999999999999877778899999999999999999877788899999999999999


Q ss_pred             ccccCCCCCcCCCCCccceEEecCccccC-CcCccccCCCCccEEEcccccceeecCCCCCcCCC--cEEEeecccc
Q 035481           86 NKLSGDIPHWIGNFSGLWVLLMSENYLQG-SIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSV--EHIYLHNNAI  159 (258)
Q Consensus        86 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~l~l~~~~~  159 (258)
                      |.+. .+|..  .+++|++|++.+|.+.+ ..|..++.+++|+.|++++|.+..  ..+..++.+  +++++++|.+
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence            9998 45554  79999999999999986 467889999999999999999865  345666777  9999999887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=9.1e-30  Score=214.46  Aligned_cols=134  Identities=21%  Similarity=0.252  Sum_probs=79.9

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++|++|++++|+++ .++...|.++++|++|++++|.+....+.+|.++++|++|++++|.++...+..+..+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            35677777777766 45445556677777777777776666556666677777777777766655444566666677777


Q ss_pred             ccCccccC-CCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEcccccce
Q 035481           83 VSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLS  137 (258)
Q Consensus        83 l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  137 (258)
                      +++|.+.. ..+..+..+++|++|++.+|...+..+ ..+..+++|+.|++++|.+.
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            76666653 233455566666666666555222222 34444555555555554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=4.8e-29  Score=217.40  Aligned_cols=243  Identities=21%  Similarity=0.227  Sum_probs=153.3

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCc-ccc-ccCcccc-------CCcccceeecccccccccCCc--
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNN-FYG-QLFPNYM-------NLTHLRSLLLDNNNFSGKMTD--   70 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~--   70 (258)
                      +++|++|++++|.+.+.+| ..|.++++|+.|++++|. +++ ..|..+.       .+++|++|++++|.++ ..+.  
T Consensus       490 L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             CCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            6788888888888776676 445778888888888887 654 3444333       3448888888888877 5566  


Q ss_pred             ccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCC-ccEEEcccccceeecCCCCCcC--
Q 035481           71 GLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVC-LEFIDISENSLSGSMVSLSNLS--  147 (258)
Q Consensus        71 ~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--  147 (258)
                      .+..+++|+.|++++|.+. .+| .+..+++|+.|++.+|.+. .+|..+..+++ |+.|++++|.+..++..+....  
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~  644 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY  644 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence            6777888888888888777 555 6777788888888887777 66666777777 7777777777765554443322  


Q ss_pred             CCcEEEeecccccc-----------------------------cCccchhcCCCceEEEccCCcccCCCChhh-cc----
Q 035481          148 SVEHIYLHNNAING-----------------------------LIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NE----  193 (258)
Q Consensus       148 ~L~~l~l~~~~~~~-----------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~----  193 (258)
                      +|+.|++++|.+.+                             .....+..+++|+.|++++|.+. .+|..+ ..    
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~  723 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN  723 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence            25555555555433                             22222334455555555555554 222222 11    


Q ss_pred             ---CCCccEEEeeCCeecccCCcccc--CCCcccEEEccCceeecCCCcccccccchhhhhhcc
Q 035481          194 ---LSNLHFLLLRGNYLQGRIPNQLC--QLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDY  252 (258)
Q Consensus       194 ---~~~L~~L~l~~~~l~~~~~~~l~--~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~  252 (258)
                         +++|+.|++++|++. .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|++++
T Consensus       724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred             ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence               125666666666555 4455554  55666666666666653 555566666666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.2e-28  Score=208.08  Aligned_cols=247  Identities=22%  Similarity=0.252  Sum_probs=195.9

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      |...+++++++++++ .+|...+   +++++|++++|.+....+..|.++++|++|++++|.++...+.++..+++|++|
T Consensus        30 ~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           30 NELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ---CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            344578999999999 7887663   899999999999998877899999999999999999998778889999999999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCC-cCccccCCCCccEEEcccccceeecCCCCCcCCC--cEEEeeccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGS-IPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSV--EHIYLHNNA  158 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~l~l~~~~  158 (258)
                      ++++|.+. .+|..  .+++|++|++.+|.+.+. .|..+..+++|+.|++++|.+..  ..+..++.+  +++++++|.
T Consensus       106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESS
T ss_pred             ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeeccc
Confidence            99999998 55555  799999999999999853 35789999999999999998865  345555566  999999987


Q ss_pred             c--cccCccchhcC------------------------------------------------------------------
Q 035481          159 I--NGLIPIALLRS------------------------------------------------------------------  170 (258)
Q Consensus       159 ~--~~~~~~~~~~~------------------------------------------------------------------  170 (258)
                      +  ++..+..+..+                                                                  
T Consensus       181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~  260 (562)
T 3a79_B          181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE  260 (562)
T ss_dssp             CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred             ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence            7  43333333221                                                                  


Q ss_pred             ---------------CCceEEEccCCcccCCCChhh--------------------------------------------
Q 035481          171 ---------------STLLTLDLRDNKLFGRIPHQI--------------------------------------------  191 (258)
Q Consensus       171 ---------------~~L~~L~l~~~~~~~~~~~~~--------------------------------------------  191 (258)
                                     ++|++|++++|.+...+|..+                                            
T Consensus       261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~  340 (562)
T 3a79_B          261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD  340 (562)
T ss_dssp             ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred             CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence                           266777777776654444332                                            


Q ss_pred             ---------ccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec--CCCcccccccchhhhhhcccccCC
Q 035481          192 ---------NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG--PIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       192 ---------~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                               ..+++|++|++++|.+.+..|..+..+++|++|++++|.+++  .+|..+..+++|+.|++++|++++
T Consensus       341 n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred             CCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence                     566788888888888887778888888889999999988874  234567888899999999988875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=3.3e-29  Score=211.05  Aligned_cols=160  Identities=20%  Similarity=0.163  Sum_probs=121.0

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCcc
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLE   79 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~   79 (258)
                      ++++|++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|+
T Consensus        48 ~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           48 ACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             SCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             cCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            3678888888888887 56666778888888888888888766666688888888888888887643 345677888888


Q ss_pred             EEEccCcc-ccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC-CCcCCCcEEEeecc
Q 035481           80 VLNVSNNK-LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL-SNLSSVEHIYLHNN  157 (258)
Q Consensus        80 ~l~l~~~~-~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l~l~~~  157 (258)
                      ++++++|. +....+..+..+++|++|++.+|.+.+..+..+..+++|+.|+++.+.....+..+ ..+++|+++++++|
T Consensus       127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT  206 (549)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred             EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence            88888887 34333456788888888888888888777788888888888888887765433322 24667777777777


Q ss_pred             cccc
Q 035481          158 AING  161 (258)
Q Consensus       158 ~~~~  161 (258)
                      .+++
T Consensus       207 ~l~~  210 (549)
T 2z81_A          207 NLAR  210 (549)
T ss_dssp             BCTT
T ss_pred             cccc
Confidence            6543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.7e-29  Score=197.48  Aligned_cols=253  Identities=17%  Similarity=0.162  Sum_probs=209.5

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      |+.....+.++++++ .+|..+   .++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            455556788889998 888765   3689999999999987777789999999999999999987777889999999999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEcccc-cceeec-CCCCCcCCCcEEEeeccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISEN-SLSGSM-VSLSNLSSVEHIYLHNNA  158 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~L~~l~l~~~~  158 (258)
                      ++++|.+....+..+..+++|++|++.+|.+..... ..+..+++|+.|++++| .+...+ ..+..+++|+++++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999999985444458899999999999999985444 47888999999999998 466653 567889999999999999


Q ss_pred             ccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCcccc---CCCcccEEEccCceeec--
Q 035481          159 INGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC---QLRKLGIMDLSHNRLNG--  233 (258)
Q Consensus       159 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~l~l~~~~~~~--  233 (258)
                      +++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+.   ....++.++++++.+.+  
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            9988888999999999999999998644444455689999999999999865544332   45678888888887763  


Q ss_pred             --CCCcccccccchhhhhhcccccCCC
Q 035481          234 --PIPSCLGNVSSWREVIDDYSLLSGF  258 (258)
Q Consensus       234 --~~~~~~~~l~~L~~l~l~~~~~~~~  258 (258)
                        .+|..+..+++|+.|++++|+++++
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i  292 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKSV  292 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCcc
Confidence              4677889999999999999999753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=2.6e-29  Score=197.53  Aligned_cols=237  Identities=24%  Similarity=0.282  Sum_probs=188.9

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|.++ .++...|.++++|++|++++|.+.+..+  +..+++|++|++++|.++...     ..++|+++
T Consensus        33 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             GGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             CCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            468899999999988 6776777889999999999998865433  788899999999998876332     34789999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCC-CCcCCCcEEEeecccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSL-SNLSSVEHIYLHNNAI  159 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~l~l~~~~~  159 (258)
                      ++++|.+....+.   .+++|+.+++.+|.+.+..+..+..+++|+.|++++|.+.... ..+ ..+++|++|++++|.+
T Consensus       105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             ECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence            9999888744332   3678999999999988766667888899999999999887753 333 3678899999999988


Q ss_pred             cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee-cCCCcc
Q 035481          160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN-GPIPSC  238 (258)
Q Consensus       160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~-~~~~~~  238 (258)
                      +....  ...+++|++|++++|.++. .+..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+. +.++..
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~  257 (317)
T 3o53_A          182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (317)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred             ccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence            76532  2347899999999999874 4445888899999999999888 46777888899999999999987 667788


Q ss_pred             cccccchhhhhhccc
Q 035481          239 LGNVSSWREVIDDYS  253 (258)
Q Consensus       239 ~~~l~~L~~l~l~~~  253 (258)
                      +..++.|+.+++.++
T Consensus       258 ~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          258 FSKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHTCHHHHHHHHHHH
T ss_pred             HhccccceEEECCCc
Confidence            889999999988744

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=8.2e-29  Score=209.49  Aligned_cols=247  Identities=18%  Similarity=0.169  Sum_probs=203.0

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|+++++.+. .+|..+ ..+ +|+.|++++|.+.....   ..+++|+.|++++|.+....+.  ..+++|+++
T Consensus       281 l~~L~~L~l~~~~l~-~l~~~~-~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L  352 (570)
T 2z63_A          281 LTNVSSFSLVSVTIE-RVKDFS-YNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL  352 (570)
T ss_dssp             GTTCSEEEEESCEEC-SCCBCC-SCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred             cCcccEEEecCccch-hhhhhh-ccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence            467888888888877 566554 445 88888888887763322   4667888888888876643332  567889999


Q ss_pred             EccCccccCCC--CCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC--CCCCcCCCcEEEeecc
Q 035481           82 NVSNNKLSGDI--PHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV--SLSNLSSVEHIYLHNN  157 (258)
Q Consensus        82 ~l~~~~~~~~~--~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~  157 (258)
                      ++++|.+....  +..+..+++|+.+++.+|.+.+..+ .+..+++|+.|++++|.+.....  .+..+++|+++++++|
T Consensus       353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  431 (570)
T 2z63_A          353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  431 (570)
T ss_dssp             ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred             eCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence            99998876332  4567788999999999998875443 48889999999999999877543  5778899999999999


Q ss_pred             cccccCccchhcCCCceEEEccCCccc-CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCC
Q 035481          158 AINGLIPIALLRSSTLLTLDLRDNKLF-GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP  236 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~  236 (258)
                      .+.+..+..+..+++|++|++++|.+. ...|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++..+
T Consensus       432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence            998888888899999999999999986 4577888999999999999999998888999999999999999999997767


Q ss_pred             cccccccchhhhhhcccccCC
Q 035481          237 SCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       237 ~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ..+..+++|+.|++++|++++
T Consensus       512 ~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          512 GIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTTTTCTTCCEEECCSSCBCC
T ss_pred             HHhhcccCCcEEEecCCcccC
Confidence            789999999999999999876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=1.9e-27  Score=203.45  Aligned_cols=110  Identities=25%  Similarity=0.322  Sum_probs=83.8

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      ++++|++|++++|+++ .++.++|.++++|++|++++|++....+..|.++++|++|++++|+++...+..+..+++|++
T Consensus        74 ~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~  152 (635)
T 4g8a_A           74 SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  152 (635)
T ss_dssp             TCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence            3678888888888887 788888888888888888888887777677888888888888888887666666777888888


Q ss_pred             EEccCccccC-CCCCcCCCCCccceEEecCcc
Q 035481           81 LNVSNNKLSG-DIPHWIGNFSGLWVLLMSENY  111 (258)
Q Consensus        81 l~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~  111 (258)
                      |++++|.+.. ..+..+..+++|++|++.+|.
T Consensus       153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             eccccCccccCCCchhhccchhhhhhcccCcc
Confidence            8888877653 234555666666666665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=4.3e-30  Score=201.59  Aligned_cols=245  Identities=21%  Similarity=0.217  Sum_probs=196.7

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCcccccc-Ccccc-------CCcccceeecccccccccCCccc--
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQL-FPNYM-------NLTHLRSLLLDNNNFSGKMTDGL--   72 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--   72 (258)
                      ++|+.++++++.+  .+|..+...   ++.|++++|.+.... +..+.       ++++|++|++++|.++...+..+  
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            3466677777777  466655432   888899998885332 22222       58899999999999987677765  


Q ss_pred             CCCCCccEEEccCccccCCCCCcCCCC-----CccceEEecCccccCCcCccccCCCCccEEEcccccceee---cCCC-
Q 035481           73 LSSTLLEVLNVSNNKLSGDIPHWIGNF-----SGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS---MVSL-  143 (258)
Q Consensus        73 ~~l~~L~~l~l~~~~~~~~~~~~l~~l-----~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~-  143 (258)
                      ..+++|++|++++|.+... +..+..+     ++|++|++.+|.+.+..+..+..+++|+.|++++|.+.+.   +..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            7889999999999999855 6666665     8999999999999977778899999999999999986542   2233 


Q ss_pred             -CCcCCCcEEEeecccccc---cCccchhcCCCceEEEccCCcccCCCC-hhhccCCCccEEEeeCCeecccCCccccCC
Q 035481          144 -SNLSSVEHIYLHNNAING---LIPIALLRSSTLLTLDLRDNKLFGRIP-HQINELSNLHFLLLRGNYLQGRIPNQLCQL  218 (258)
Q Consensus       144 -~~~~~L~~l~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~  218 (258)
                       ..+++|++|++++|.++.   .....+..+++|++|++++|.+....+ ..+..+++|++|++++|.++ .+|..+.  
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--  273 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--  273 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence             788999999999999873   233445678999999999999986654 45667899999999999998 6676665  


Q ss_pred             CcccEEEccCceeecCCCcccccccchhhhhhcccccCCC
Q 035481          219 RKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF  258 (258)
Q Consensus       219 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~  258 (258)
                      ++|++|++++|++++ +|. +..+++|+.|++++|++++.
T Consensus       274 ~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCCCCCC
Confidence            899999999999985 466 99999999999999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=8.9e-28  Score=198.39  Aligned_cols=80  Identities=25%  Similarity=0.328  Sum_probs=42.4

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|.++ .++.  +.++++|++|++++|.+....+  +.++++|++|++++|.++...  .+..+++|++|
T Consensus        67 l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L  139 (466)
T 1o6v_A           67 LNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRL  139 (466)
T ss_dssp             CTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEE
Confidence            456666666666665 3433  4556666666666665543322  555555555555555554321  14444555555


Q ss_pred             EccCccc
Q 035481           82 NVSNNKL   88 (258)
Q Consensus        82 ~l~~~~~   88 (258)
                      ++++|.+
T Consensus       140 ~l~~n~l  146 (466)
T 1o6v_A          140 ELSSNTI  146 (466)
T ss_dssp             EEEEEEE
T ss_pred             ECCCCcc
Confidence            5544443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=1.3e-27  Score=197.41  Aligned_cols=104  Identities=25%  Similarity=0.360  Sum_probs=49.0

Q ss_pred             cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481          146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD  225 (258)
Q Consensus       146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~  225 (258)
                      +++|+.+++++|.+++..+  +..+++|+.|++++|.+....+  +..+++|+.|++++|++.+..+  +..+++|+.|+
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            3444444444444332221  3344444444444444432211  4445555555555555543222  44555555555


Q ss_pred             ccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          226 LSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       226 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      +++|.+++..|  +..+++|+.|++++|++++
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            55555553322  4555566666666665554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=8.8e-29  Score=194.53  Aligned_cols=238  Identities=18%  Similarity=0.088  Sum_probs=200.1

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      .++..+++++.+. ..+...+..+++|++|++++|.+....+..|..+++|++|++++|.++...+  +..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            3566777788776 6677778888999999999999987777789999999999999999875443  788999999999


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeeccccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      ++|.+...     ...++|+.+++.+|.+.+..+.   .+++|+.|++++|.+.... ..+..+++|++|++++|.+++.
T Consensus        88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            99988732     2348999999999998855433   3678999999999998764 3677889999999999999877


Q ss_pred             Cccch-hcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccccc
Q 035481          163 IPIAL-LRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN  241 (258)
Q Consensus       163 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~  241 (258)
                      .+..+ ..+++|++|++++|.++.. + ....+++|++|++++|.+.+. +..+..+++|++|++++|.++ .+|..+..
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~  235 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF  235 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence            66655 4689999999999998644 2 233589999999999999854 556889999999999999998 68888999


Q ss_pred             ccchhhhhhcccccC
Q 035481          242 VSSWREVIDDYSLLS  256 (258)
Q Consensus       242 l~~L~~l~l~~~~~~  256 (258)
                      +++|+.|++++|+++
T Consensus       236 l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          236 SQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTCCEEECTTCCCB
T ss_pred             CCCCCEEEccCCCcc
Confidence            999999999999986

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=5.8e-28  Score=200.07  Aligned_cols=235  Identities=25%  Similarity=0.291  Sum_probs=196.0

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|++++|.++ .++...|.++++|++|++++|.+.+..+  |..+++|++|++++|.++...     ..++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             CCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            468999999999998 6777778999999999999999875443  888999999999999887432     23789999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCC-CcCCCcEEEeecccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLS-NLSSVEHIYLHNNAI  159 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~l~l~~~~~  159 (258)
                      ++++|.+....+.   .+++|+.|++.+|.+.+..+..+..+++|+.|++++|.+... +..+. .+++|+.|++++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999988754433   468899999999999987787888899999999999999874 44454 689999999999998


Q ss_pred             cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee-cCCCcc
Q 035481          160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN-GPIPSC  238 (258)
Q Consensus       160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~-~~~~~~  238 (258)
                      ++..+  ...+++|+.|++++|.++. .+..+..+++|+.|++++|.+.+ +|..+..+++|+.+++++|.+. +.+|..
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence            86633  3358999999999999975 44458889999999999999984 6777888999999999999987 566778


Q ss_pred             cccccchhhhhhc
Q 035481          239 LGNVSSWREVIDD  251 (258)
Q Consensus       239 ~~~l~~L~~l~l~  251 (258)
                      +..++.|+.+.+.
T Consensus       258 ~~~l~~L~~l~~~  270 (487)
T 3oja_A          258 FSKNQRVQTVAKQ  270 (487)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCCCCcEEecc
Confidence            8899999988885

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.95  E-value=1.2e-26  Score=178.95  Aligned_cols=222  Identities=22%  Similarity=0.178  Sum_probs=182.5

Q ss_pred             EEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCc
Q 035481            7 TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNN   86 (258)
Q Consensus         7 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~   86 (258)
                      ..+..+.++. .+|..+   .+++++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            3556666676 677654   357999999999998777778889999999999999988776777888999999999999


Q ss_pred             cccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee--ecCCCCCcCCCcEEEeecccccccCc
Q 035481           87 KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIP  164 (258)
Q Consensus        87 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~  164 (258)
                      .+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+..  .+..+..+++|++|++++|.+++..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            9886667788899999999999999886666678889999999999998876  45677888999999999999887766


Q ss_pred             cchhcCCCce----EEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481          165 IALLRSSTLL----TLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       165 ~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      ..+..+++++    .+++++|.+....+..+ ...+|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            6676666666    89999999875544444 34589999999999987766778889999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=3.3e-26  Score=188.04  Aligned_cols=207  Identities=22%  Similarity=0.219  Sum_probs=149.9

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|++|+++++.++ .+|  .+..+++|++|++++|.+.+.   .+..+++|++|++++|.++..   .+..+++|+++
T Consensus        41 l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L  111 (457)
T 3bz5_A           41 LATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYL  111 (457)
T ss_dssp             HTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEE
T ss_pred             cCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCEE
Confidence            578999999999988 455  367889999999999988764   277888999999999988753   27788889999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      ++++|.+.. .+  +..+++|+++++.+|.+++.   .+..+++|+.|+++.|...... .+..+++|+++++++|.+++
T Consensus       112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC
T ss_pred             ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce
Confidence            999888874 33  67888899999888888753   2667777888888777432222 45566777777777777765


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      ..   +..+++|+.|++++|.++..   .+..+++|++|++++|++.+ +|  +..+++|+.|++++|.+++
T Consensus       185 l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          185 LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            32   55666777777777776543   25566777777777777664 33  5566677777777776664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=2.4e-26  Score=188.83  Aligned_cols=188  Identities=23%  Similarity=0.203  Sum_probs=144.5

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      ++++|++|++++|+++ .++   +..+++|++|++++|.+.+.   .+..+++|++|++++|.++.. +  +..+++|++
T Consensus        62 ~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~  131 (457)
T 3bz5_A           62 KLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTY  131 (457)
T ss_dssp             GCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             ccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCE
Confidence            3688999999999998 454   67889999999999988764   277889999999999988753 2  778899999


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccc
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  160 (258)
                      +++++|.+...   .+..+++|+.+++.+|...+..  .+..+++|+.|++++|.+...+  +..++.|+.+++++|.++
T Consensus       132 L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          132 LNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             EECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred             EECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence            99999988743   2677888888888888544343  4667788888888888877654  667778888888888777


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccC
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI  211 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  211 (258)
                      +.   .+..+++|+.|++++|.++. +|  +..+++|+.|++++|.+.+..
T Consensus       205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence            54   35667788888888887764 34  667777888888887776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=4.2e-25  Score=169.74  Aligned_cols=199  Identities=24%  Similarity=0.258  Sum_probs=112.7

Q ss_pred             ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      .+++++++++++ .+|..+   .++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            456666666666 566543   2456667777766665555566666667777776666664444445566666666666


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccccC
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLI  163 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~  163 (258)
                      +|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...+.. +..+++|++|++++|.++...
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            6666644444555666666666666666555444555566666666666555544332 344555555555555554444


Q ss_pred             ccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCee
Q 035481          164 PIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYL  207 (258)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  207 (258)
                      +..+..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            44444455555555555555433333444455555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=8.5e-26  Score=174.21  Aligned_cols=205  Identities=18%  Similarity=0.156  Sum_probs=178.0

Q ss_pred             cccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEc
Q 035481           52 THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDI  131 (258)
Q Consensus        52 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  131 (258)
                      +.+++|++++|.++...+..+..+++|+++++++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999998777778889999999999999998666678899999999999999998777788999999999999


Q ss_pred             ccccceeecC-CCCCcCCCcEEEeeccccccc-CccchhcCCCceEEEccCCcccCCCChhhccCCCcc----EEEeeCC
Q 035481          132 SENSLSGSMV-SLSNLSSVEHIYLHNNAINGL-IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH----FLLLRGN  205 (258)
Q Consensus       132 ~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~  205 (258)
                      ++|.+..... .+..+++|++|++++|.++.. .+..+..+++|++|++++|.++...+..+..+++++    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            9999987654 578899999999999999864 478899999999999999999877777777776776    8999999


Q ss_pred             eecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          206 YLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       206 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      .+.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            99866665554 4589999999999986555668999999999999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.6e-26  Score=191.47  Aligned_cols=217  Identities=19%  Similarity=0.105  Sum_probs=185.5

Q ss_pred             CCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceE
Q 035481           26 GCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVL  105 (258)
Q Consensus        26 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l  105 (258)
                      .+++|+.|++++|.+....+..|..+++|++|++++|.++...+  +..+++|++|++++|.+....     ..++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            34589999999999998877889999999999999999875443  888999999999999887322     34899999


Q ss_pred             EecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecccccccCccchh-cCCCceEEEccCCcc
Q 035481          106 LMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAINGLIPIALL-RSSTLLTLDLRDNKL  183 (258)
Q Consensus       106 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~  183 (258)
                      ++.+|.+.+..+.   .+++|+.|++++|.+... +..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999999865443   468899999999999875 44677899999999999999887776665 789999999999998


Q ss_pred             cCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481          184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       184 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +.. + ....+++|+.|++++|.+.+. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus       182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          182 YDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            744 2 234589999999999999864 455889999999999999998 58888999999999999999986

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=4.8e-25  Score=169.42  Aligned_cols=203  Identities=21%  Similarity=0.210  Sum_probs=173.6

Q ss_pred             CCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEe
Q 035481           28 PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLM  107 (258)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l  107 (258)
                      .+.+.++++++.++.+ +..+.  +.+++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAI-PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCcc-CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4678999999988743 33333  57999999999998777778889999999999999998665666788999999999


Q ss_pred             cCccccCCcCccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCC
Q 035481          108 SENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR  186 (258)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  186 (258)
                      .+|.+.+..+..+..+++|+.|++++|.+...+. .+..+++|++|++++|.++...+..+..+++|++|++++|.+...
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            9999986666678889999999999999987654 467889999999999999877777788899999999999999877


Q ss_pred             CChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481          187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       187 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            77778899999999999999987767778889999999999999873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=2.1e-25  Score=172.96  Aligned_cols=206  Identities=27%  Similarity=0.243  Sum_probs=169.7

Q ss_pred             CcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCC
Q 035481           20 SRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNF   99 (258)
Q Consensus        20 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l   99 (258)
                      |...+.++++++.++++++.++.+. ..+.  +.+++|++++|.++...+..+..+++|++|++++|.+....+ . ..+
T Consensus         2 p~C~~~~l~~l~~l~~~~~~l~~ip-~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l   76 (290)
T 1p9a_G            2 PICEVSKVASHLEVNCDKRNLTALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTL   76 (290)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCC
T ss_pred             CcccccccCCccEEECCCCCCCcCC-CCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCC
Confidence            3444678899999999999887543 3333  688999999999987777788899999999999998874332 2 678


Q ss_pred             CccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481          100 SGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL  178 (258)
Q Consensus       100 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  178 (258)
                      ++|+.|++.+|.+. .++..+..+++|+.|++++|.+...+ ..+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus        77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            99999999999988 66777888899999999999988766 45778889999999999988777777888899999999


Q ss_pred             cCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++|.++...+..+..+++|+.|++++|++. .+|..+...+.|+.+++++|.+.
T Consensus       156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            999988666667788899999999999888 56667777788999999999886

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=5.5e-26  Score=174.81  Aligned_cols=210  Identities=20%  Similarity=0.245  Sum_probs=167.4

Q ss_pred             cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481           25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV  104 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  104 (258)
                      ..+++|+.|+++++.+..  ...+..+++|++|++++|.++..  ..+..+++|++|++++|.+....+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            457788888888888753  34577788888899988887642  46778888899999888888666666788888999


Q ss_pred             EEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcc
Q 035481          105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL  183 (258)
Q Consensus       105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  183 (258)
                      |++.+|.+.+..+..+..+++|+.|++++|.+...+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            99988888866666678888889999888888776544 46788888999998888877777778888899999999988


Q ss_pred             cCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccch
Q 035481          184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSW  245 (258)
Q Consensus       184 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L  245 (258)
                      ....+..+..+++|+.|++++|.+.       +.|++++.++++.|.+++.+|..++.++..
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            8777777788889999999888765       346678888888888888888877776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.5e-26  Score=181.48  Aligned_cols=223  Identities=20%  Similarity=0.214  Sum_probs=180.8

Q ss_pred             ceEEecCcCccc-cccCcccc------cCCCCccEEECCCCccccccCccc--cCCcccceeecccccccccCCcccCCC
Q 035481            5 LITLDLSRNNFS-GELSRPIF------SGCPSLETLDLSNNNFYGQLFPNY--MNLTHLRSLLLDNNNFSGKMTDGLLSS   75 (258)
Q Consensus         5 L~~L~l~~~~l~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l   75 (258)
                      |++|+++++.+. ..++....      .++++|++|++++|.+.+..+..+  ..+++|++|++++|.++.. +..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            677889999884 23443331      258999999999999987777765  7899999999999999865 6655555


Q ss_pred             -----CCccEEEccCccccCCCCCcCCCCCccceEEecCccccCC--cCccc--cCCCCccEEEcccccceeec---C-C
Q 035481           76 -----TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGS--IPVQL--GNLVCLEFIDISENSLSGSM---V-S  142 (258)
Q Consensus        76 -----~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~~---~-~  142 (258)
                           ++|++|++++|.+....+..+..+++|++|++.+|.+.+.  .+..+  ..+++|+.|++++|.+...+   . .
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                 8999999999999977778899999999999999987644  22333  78899999999999987432   1 2


Q ss_pred             CCCcCCCcEEEeecccccccCc-cchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcc
Q 035481          143 LSNLSSVEHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL  221 (258)
Q Consensus       143 ~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  221 (258)
                      +..+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L  298 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV  298 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence            3467899999999999987653 45566899999999999997 5665555  8999999999999865 55 8899999


Q ss_pred             cEEEccCceeec
Q 035481          222 GIMDLSHNRLNG  233 (258)
Q Consensus       222 ~~l~l~~~~~~~  233 (258)
                      ++|++++|.+++
T Consensus       299 ~~L~L~~N~l~~  310 (312)
T 1wwl_A          299 GNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECTTCTTTC
T ss_pred             CEEeccCCCCCC
Confidence            999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=7.1e-25  Score=168.61  Aligned_cols=208  Identities=18%  Similarity=0.168  Sum_probs=181.2

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +++|+.|+++++.++ .++.  +..+++|++|++++|.+..  .+.+..+++|++|++++|.++...+..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            578999999999987 5553  5779999999999999875  3578899999999999999987777778899999999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeeccccc
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~  160 (258)
                      ++++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...+.. +..+++|++|++++|.++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            9999999866667788999999999999999877777788999999999999999876654 578899999999999999


Q ss_pred             ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcc
Q 035481          161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL  221 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  221 (258)
                      +..+..+..+++|+.|++++|.+.       ..+++++.|++..|.+.+.+|..++.++..
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence            888888889999999999999875       346789999999999999888888766543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=4.6e-24  Score=165.39  Aligned_cols=200  Identities=25%  Similarity=0.253  Sum_probs=177.0

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      ++++++++++++++++ .+|..+   .++++.|++++|.+....+..|..+++|++|++++|.++....  ...+++|++
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             ccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            4688999999999998 888776   3689999999999988888889999999999999999875433  267899999


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccc
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAI  159 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~  159 (258)
                      |++++|.+. .++..+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.+...+.. +..+++|+.|++++|.+
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            999999998 6777888999999999999999977777899999999999999999887654 56889999999999999


Q ss_pred             cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      +...+..+..+++|+.|++++|.++ .+|..+...++|+.|++++|.+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            9887778888999999999999997 66777778889999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=6.2e-24  Score=179.70  Aligned_cols=118  Identities=26%  Similarity=0.267  Sum_probs=84.2

Q ss_pred             CCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEee
Q 035481          124 VCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR  203 (258)
Q Consensus       124 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  203 (258)
                      ++|+.|++++|.+..++..   .++|+.|++++|.++....    .+++|+.|++++|.++. +|   ..+++|+.|+++
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls  249 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVS  249 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECC
T ss_pred             CCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECC
Confidence            4455555555554433321   2455555555555553221    23678888888888764 44   456889999999


Q ss_pred             CCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          204 GNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       204 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      +|.+. .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus       250 ~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          250 GNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             SSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             CCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence            99888 4454   5688999999999998 789999999999999999999875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.92  E-value=4.1e-28  Score=200.26  Aligned_cols=254  Identities=18%  Similarity=0.133  Sum_probs=145.6

Q ss_pred             cceEEecCcCccccc---cCcccccCCCCccEEECCCCccccccCcccc-----CCcccceeecccccccccC----Ccc
Q 035481            4 ELITLDLSRNNFSGE---LSRPIFSGCPSLETLDLSNNNFYGQLFPNYM-----NLTHLRSLLLDNNNFSGKM----TDG   71 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~   71 (258)
                      +|++|++++|++++.   .....+..+++|++|++++|.+....+..+.     ..++|++|++++|.++...    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            688888888887631   1234567788888888888877543333221     2446777777777665322    223


Q ss_pred             cCCCCCccEEEccCccccCCCCCcCC-----CCCccceEEecCccccCC----cCccccCC-------------------
Q 035481           72 LLSSTLLEVLNVSNNKLSGDIPHWIG-----NFSGLWVLLMSENYLQGS----IPVQLGNL-------------------  123 (258)
Q Consensus        72 ~~~l~~L~~l~l~~~~~~~~~~~~l~-----~l~~L~~l~l~~~~~~~~----~~~~~~~~-------------------  123 (258)
                      +..+++|+++++++|.+....+..+.     ..++|+.|++.+|.+...    ++..+..+                   
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            34456666666666655421111111     133455555555444321    12233334                   


Q ss_pred             ----------CCccEEEccccccee-----ecCCCCCcCCCcEEEeecccccccCccchh-----cCCCceEEEccCCcc
Q 035481          124 ----------VCLEFIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGLIPIALL-----RSSTLLTLDLRDNKL  183 (258)
Q Consensus       124 ----------~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~  183 (258)
                                ++|+.|++++|.+..     ++..+..+++|++|++++|.+++.....+.     ..++|++|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence                      445555555554433     222233445556666665555432222221     124666666666665


Q ss_pred             cCC----CChhhccCCCccEEEeeCCeecccCCccccC-----CCcccEEEccCceeec----CCCcccccccchhhhhh
Q 035481          184 FGR----IPHQINELSNLHFLLLRGNYLQGRIPNQLCQ-----LRKLGIMDLSHNRLNG----PIPSCLGNVSSWREVID  250 (258)
Q Consensus       184 ~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~l~l~~~~~~~----~~~~~~~~l~~L~~l~l  250 (258)
                      +..    ++..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++    .++..+..+++|+.|++
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l  405 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL  405 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence            433    2344556688888888888877554444432     5688888888888874    56777888888888888


Q ss_pred             cccccCC
Q 035481          251 DYSLLSG  257 (258)
Q Consensus       251 ~~~~~~~  257 (258)
                      ++|++++
T Consensus       406 ~~N~i~~  412 (461)
T 1z7x_W          406 SNNCLGD  412 (461)
T ss_dssp             CSSSCCH
T ss_pred             CCCCCCH
Confidence            8888763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.92  E-value=8e-27  Score=186.65  Aligned_cols=248  Identities=20%  Similarity=0.156  Sum_probs=134.0

Q ss_pred             EecCcCccccccCcccccCCCCccEEECCCCccccccC----ccccCCc-ccceeecccccccccCCcccCCC-----CC
Q 035481            8 LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLF----PNYMNLT-HLRSLLLDNNNFSGKMTDGLLSS-----TL   77 (258)
Q Consensus         8 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~   77 (258)
                      ++++++++++.+| .++...++|++|++++|.+....+    ..|..++ +|++|++++|.++...+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4556666653332 233434446677777666655444    4455565 66667776666654444444332     66


Q ss_pred             ccEEEccCccccCCCCCc----CCCC-CccceEEecCccccCCcCcc----ccC-CCCccEEEccccccee-----ecCC
Q 035481           78 LEVLNVSNNKLSGDIPHW----IGNF-SGLWVLLMSENYLQGSIPVQ----LGN-LVCLEFIDISENSLSG-----SMVS  142 (258)
Q Consensus        78 L~~l~l~~~~~~~~~~~~----l~~l-~~L~~l~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~-----~~~~  142 (258)
                      |++|++++|.++...+..    +..+ ++|++|++.+|.+.+..+..    +.. +++|+.|++++|.+.+     ....
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            667777666665333322    2233 56667777666665443332    222 2466677776666653     1122


Q ss_pred             CCCcC-CCcEEEeecccccccCcc----chhcC-CCceEEEccCCcccCCC----Chhhcc-CCCccEEEeeCCeecccC
Q 035481          143 LSNLS-SVEHIYLHNNAINGLIPI----ALLRS-STLLTLDLRDNKLFGRI----PHQINE-LSNLHFLLLRGNYLQGRI  211 (258)
Q Consensus       143 ~~~~~-~L~~l~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~l~~~~  211 (258)
                      +...+ +|++|++++|.+++..+.    .+... ++|++|++++|.+....    +..+.. .++|++|++++|.+.+..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            22333 667777777666544332    22333 46777777777665422    223333 346777777777665433


Q ss_pred             C----ccccCCCcccEEEccCceeec-------CCCcccccccchhhhhhcccccC
Q 035481          212 P----NQLCQLRKLGIMDLSHNRLNG-------PIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       212 ~----~~l~~~~~L~~l~l~~~~~~~-------~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +    ..+..+++|+.|++++|.+.+       .++..+..+++|+.|++++|++.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            2    223455667777777666321       22334556666667777766664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.92  E-value=6.3e-28  Score=199.09  Aligned_cols=253  Identities=20%  Similarity=0.167  Sum_probs=117.4

Q ss_pred             CcceEEecCcCccccccCcccccCCC----CccEEECCCCccccc----cCccccCCcccceeecccccccccCCccc--
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCP----SLETLDLSNNNFYGQ----LFPNYMNLTHLRSLLLDNNNFSGKMTDGL--   72 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~----~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--   72 (258)
                      ++|++|++++|.+.+..+..++..++    +|++|++++|.+...    .+..+..+++|++|++++|.++......+  
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  135 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  135 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence            44555555555444222222222233    355555555544421    13334445555555555554432211111  


Q ss_pred             ---CCCCCccEEEccCccccCCC----CCcCCCCCccceEEecCccccCCcCcccc-----CCCCccEEEccccccee--
Q 035481           73 ---LSSTLLEVLNVSNNKLSGDI----PHWIGNFSGLWVLLMSENYLQGSIPVQLG-----NLVCLEFIDISENSLSG--  138 (258)
Q Consensus        73 ---~~l~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~--  138 (258)
                         ...++|++|++++|.++...    +..+..+++|++|++.+|.+.......+.     ..++|+.|++++|.+..  
T Consensus       136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  215 (461)
T 1z7x_W          136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN  215 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence               11234555555555444211    22333455666666666555432222221     23466666666666543  


Q ss_pred             ---ecCCCCCcCCCcEEEeecccccccC-----ccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCe
Q 035481          139 ---SMVSLSNLSSVEHIYLHNNAINGLI-----PIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNY  206 (258)
Q Consensus       139 ---~~~~~~~~~~L~~l~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~  206 (258)
                         .+..+..+++|+++++++|.+++..     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.
T Consensus       216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence               2233345566777777777655331     11122356666777766665432    33444556666666666666


Q ss_pred             ecccCCccccC-----CCcccEEEccCceeecC----CCcccccccchhhhhhccccc
Q 035481          207 LQGRIPNQLCQ-----LRKLGIMDLSHNRLNGP----IPSCLGNVSSWREVIDDYSLL  255 (258)
Q Consensus       207 l~~~~~~~l~~-----~~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~  255 (258)
                      +.+..+..+..     .++|++|++++|.+++.    ++..+..+++|+.|++++|.+
T Consensus       296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence            54332222221     13455555555554422    233344445555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=2.7e-23  Score=170.64  Aligned_cols=230  Identities=22%  Similarity=0.290  Sum_probs=121.1

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++|++|++++|+++ .+|  .|.++++|++|++++|.+.+. +..   .++|++|++++|.++. .+ .+..+++|++++
T Consensus       131 ~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC-CCc--ccCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            46777777777777 466  266777777777777766532 111   1355556666555543 22 344455555555


Q ss_pred             ccCccccC-------------------CCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC
Q 035481           83 VSNNKLSG-------------------DIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL  143 (258)
Q Consensus        83 l~~~~~~~-------------------~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  143 (258)
                      +++|.+..                   .+| .+..+++|+.+++.+|.+.+ .+.   .+++|+.|++++|.+...+.. 
T Consensus       202 l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~-  275 (454)
T 1jl5_A          202 ADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL-  275 (454)
T ss_dssp             CCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC-
T ss_pred             CCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc-
Confidence            55444431                   233 24455555555555555542 221   123444444444444332221 


Q ss_pred             CCcCCCcEEEeecccccccC--cc-------------chhcC-CCceEEEccCCcccCCCChhhccCCCccEEEeeCCee
Q 035481          144 SNLSSVEHIYLHNNAINGLI--PI-------------ALLRS-STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYL  207 (258)
Q Consensus       144 ~~~~~L~~l~l~~~~~~~~~--~~-------------~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  207 (258)
                        .++|+++++++|.+++..  +.             .+... ++|++|++++|.++. +|.   .+++|++|++++|.+
T Consensus       276 --~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~l  349 (454)
T 1jl5_A          276 --PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHL  349 (454)
T ss_dssp             --CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred             --cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc---cCCcCCEEECCCCcc
Confidence              134455555555444311  00             01112 467777777777653 332   257888999988888


Q ss_pred             cccCCccccCCCcccEEEccCceeec--CCCcccccc-------------cchhhhhhcccccCC
Q 035481          208 QGRIPNQLCQLRKLGIMDLSHNRLNG--PIPSCLGNV-------------SSWREVIDDYSLLSG  257 (258)
Q Consensus       208 ~~~~~~~l~~~~~L~~l~l~~~~~~~--~~~~~~~~l-------------~~L~~l~l~~~~~~~  257 (258)
                      + .+|.   .+++|++|++++|.+++  .+|..+..+             ++|+.|++++|++++
T Consensus       350 ~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          350 A-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             S-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             c-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            7 4554   46789999999999987  678888888             889999999999876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.92  E-value=2.1e-24  Score=162.90  Aligned_cols=196  Identities=18%  Similarity=0.153  Sum_probs=111.0

Q ss_pred             ccceeecccccccccCCcccCCCCCccEEEccCcc-ccCCCCCcCCCCCccceEEecC-ccccCCcCccccCCCCccEEE
Q 035481           53 HLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK-LSGDIPHWIGNFSGLWVLLMSE-NYLQGSIPVQLGNLVCLEFID  130 (258)
Q Consensus        53 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~  130 (258)
                      .+++|++++|.++...+..+..+++|+++++++|. +....+..+..+++|+.|++.+ |.++...+..+..+++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34444444444443333334444444444444443 3323333444445555555544 444433334444555555555


Q ss_pred             cccccceeecCCCCCcCCCc---EEEeecc-cccccCccchhcCCCce-EEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481          131 ISENSLSGSMVSLSNLSSVE---HIYLHNN-AINGLIPIALLRSSTLL-TLDLRDNKLFGRIPHQINELSNLHFLLLRGN  205 (258)
Q Consensus       131 l~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  205 (258)
                      +++|.+..++. +..+++++   ++++++| .++...+..+..+++|+ .|++++|.++...+..+.. ++|+.|++++|
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence            55555544333 44445555   6777777 66665556666777777 7777777776333334444 77888888887


Q ss_pred             e-ecccCCccccCC-CcccEEEccCceeecCCCcccccccchhhhhhccc
Q 035481          206 Y-LQGRIPNQLCQL-RKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYS  253 (258)
Q Consensus       206 ~-l~~~~~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~  253 (258)
                      + +.+..+..+..+ ++|++|++++|.++ .+|..  .+++|+.|.+.++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            4 765656677777 77888888888776 45543  5666666666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=5.2e-24  Score=160.76  Aligned_cols=205  Identities=16%  Similarity=0.186  Sum_probs=169.1

Q ss_pred             cccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccc-ccccCCcccCCCCCccEEEccC-ccccCCC
Q 035481           15 FSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN-FSGKMTDGLLSSTLLEVLNVSN-NKLSGDI   92 (258)
Q Consensus        15 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~   92 (258)
                      ++ .+|. +   .+++++|++++|.+..+.+..|.++++|++|++++|. ++...+..+..+++|+++++++ |.+....
T Consensus        23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            55 6666 2   3589999999999987777788999999999999996 8766666788899999999998 8888666


Q ss_pred             CCcCCCCCccceEEecCccccCCcCccccCCCCcc---EEEcccc-cceeecC-CCCCcCCCc-EEEeecccccccCccc
Q 035481           93 PHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLE---FIDISEN-SLSGSMV-SLSNLSSVE-HIYLHNNAINGLIPIA  166 (258)
Q Consensus        93 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~l~l~~~~~~~~~~~~  166 (258)
                      +..+..+++|+++++.+|.+++ +|. +..+++|+   .|++++| .+...+. .+..+++|+ ++++++|.++......
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~  175 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA  175 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred             HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence            6778889999999999999885 554 77888887   9999999 8887765 477899999 9999999998666655


Q ss_pred             hhcCCCceEEEccCCc-ccCCCChhhccC-CCccEEEeeCCeecccCCccccCCCcccEEEccCce
Q 035481          167 LLRSSTLLTLDLRDNK-LFGRIPHQINEL-SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR  230 (258)
Q Consensus       167 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~  230 (258)
                      +.. ++|+.|++++|. ++...+..+..+ ++|+.|++++|++.+. |..  .+++|+.|+++++.
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            655 899999999995 876667788888 9999999999999854 433  56789999988763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=6.3e-25  Score=172.08  Aligned_cols=225  Identities=21%  Similarity=0.211  Sum_probs=177.9

Q ss_pred             CCccEEECCCCccccccCc---cccCCcccceeecccccccccCCccc--CCCCCccEEEccCccccCCCC----CcCCC
Q 035481           28 PSLETLDLSNNNFYGQLFP---NYMNLTHLRSLLLDNNNFSGKMTDGL--LSSTLLEVLNVSNNKLSGDIP----HWIGN   98 (258)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~----~~l~~   98 (258)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+....+..+  ..+++|++|++++|.+....+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4467788887766432211   12234679999999999987777776  788999999999999875433    23346


Q ss_pred             CCccceEEecCccccCCcCccccCCCCccEEEccccccee---ec--CCCCCcCCCcEEEeecccccccCcc---chhcC
Q 035481           99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SM--VSLSNLSSVEHIYLHNNAINGLIPI---ALLRS  170 (258)
Q Consensus        99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~  170 (258)
                      +++|++|++.+|.+.+..+..+..+++|++|++++|.+..   .+  ..+..+++|++|++++|.++.....   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            8999999999999987777889999999999999998754   22  2335788999999999998743221   35678


Q ss_pred             CCceEEEccCCcccCCCChhhccC---CCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhh
Q 035481          171 STLLTLDLRDNKLFGRIPHQINEL---SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWRE  247 (258)
Q Consensus       171 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~  247 (258)
                      ++|++|++++|.+....|..+..+   ++|++|++++|++. .+|..+.  ++|++|++++|++++ +|. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccE
Confidence            999999999999987767666665   79999999999998 5666654  799999999999984 454 788999999


Q ss_pred             hhhcccccCC
Q 035481          248 VIDDYSLLSG  257 (258)
Q Consensus       248 l~l~~~~~~~  257 (258)
                      |++++|+|+.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999975

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=7.8e-26  Score=179.22  Aligned_cols=245  Identities=16%  Similarity=0.160  Sum_probs=177.7

Q ss_pred             ceEEecCcCccccccCcccccCC--CCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCccEE
Q 035481            5 LITLDLSRNNFSGELSRPIFSGC--PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEVL   81 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l   81 (258)
                      ++.++++++.+.+    ..+..+  ++++.++++++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus        49 ~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            6778888876652    233444  7888999998888755443 55788899999998887643 45567778889999


Q ss_pred             EccCccccCCCCCcCCCCCccceEEecCc-cccCC-cCccccCCCCccEEEcccc-ccee--ecCCCCCcC-CCcEEEee
Q 035481           82 NVSNNKLSGDIPHWIGNFSGLWVLLMSEN-YLQGS-IPVQLGNLVCLEFIDISEN-SLSG--SMVSLSNLS-SVEHIYLH  155 (258)
Q Consensus        82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~-~L~~l~l~  155 (258)
                      ++++|.++...+..+..+++|++|++.+| .+++. .+..+..+++|+.|++++| .+..  .+..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            99888776555666777889999999888 45532 4455677888999999888 7764  344456777 89999999


Q ss_pred             ccc--cc-ccCccchhcCCCceEEEccCCc-ccCCCChhhccCCCccEEEeeCCe-ecccCCccccCCCcccEEEccCce
Q 035481          156 NNA--IN-GLIPIALLRSSTLLTLDLRDNK-LFGRIPHQINELSNLHFLLLRGNY-LQGRIPNQLCQLRKLGIMDLSHNR  230 (258)
Q Consensus       156 ~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~~  230 (258)
                      +|.  ++ ...+..+..+++|++|++++|. ++...+..+..+++|++|++++|. +.......+.++++|++|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            884  44 2345566778899999999988 555666677888999999999884 43333346778889999999988 


Q ss_pred             eecCCCccccccc-chhhhhhcccccCCC
Q 035481          231 LNGPIPSCLGNVS-SWREVIDDYSLLSGF  258 (258)
Q Consensus       231 ~~~~~~~~~~~l~-~L~~l~l~~~~~~~~  258 (258)
                      +.   .+.+..+. .++.|++++|.++++
T Consensus       283 i~---~~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          283 VP---DGTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred             cC---HHHHHHHHhhCcceEEecccCccc
Confidence            33   23455553 477777888888763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=6.1e-27  Score=189.00  Aligned_cols=234  Identities=17%  Similarity=0.164  Sum_probs=137.5

Q ss_pred             ccCCCCccEEECCCCccccccC----ccccCCcccceeeccccccc---ccCCcc-------cCCCCCccEEEccCcccc
Q 035481           24 FSGCPSLETLDLSNNNFYGQLF----PNYMNLTHLRSLLLDNNNFS---GKMTDG-------LLSSTLLEVLNVSNNKLS   89 (258)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~l~l~~~~~~   89 (258)
                      +..+++|+.|++++|.+....+    ..+..+++|++|++++|.+.   ...+..       +..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3456667777777776654322    22456667777777665332   111222       245667777777777665


Q ss_pred             C----CCCCcCCCCCccceEEecCccccCCcCccc----cCC---------CCccEEEccccccee--ec---CCCCCcC
Q 035481           90 G----DIPHWIGNFSGLWVLLMSENYLQGSIPVQL----GNL---------VCLEFIDISENSLSG--SM---VSLSNLS  147 (258)
Q Consensus        90 ~----~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~~~~--~~---~~~~~~~  147 (258)
                      .    .++..+..+++|++|++.+|.+....+..+    ..+         ++|+.|++++|.+..  .+   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            3    234455566777777777776643222222    222         677777777776642  11   2344556


Q ss_pred             CCcEEEeeccccccc-----CccchhcCCCceEEEccCCccc----CCCChhhccCCCccEEEeeCCeeccc----CCcc
Q 035481          148 SVEHIYLHNNAINGL-----IPIALLRSSTLLTLDLRDNKLF----GRIPHQINELSNLHFLLLRGNYLQGR----IPNQ  214 (258)
Q Consensus       148 ~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~  214 (258)
                      +|++|++++|.++..     .+..+..+++|+.|++++|.++    ..++..+..+++|++|++++|.+.+.    ++..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            777777777766521     2225556677777777777663    34455566667777777777776543    2344


Q ss_pred             cc--CCCcccEEEccCceeec----CCCccc-ccccchhhhhhcccccCC
Q 035481          215 LC--QLRKLGIMDLSHNRLNG----PIPSCL-GNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       215 l~--~~~~L~~l~l~~~~~~~----~~~~~~-~~l~~L~~l~l~~~~~~~  257 (258)
                      +.  .+++|++|+|++|.+++    .+|..+ ..+++|+.|++++|++++
T Consensus       268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            42  26677777777777764    355555 446777777777777764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=4e-23  Score=161.57  Aligned_cols=190  Identities=21%  Similarity=0.314  Sum_probs=99.8

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++|++|+++++.++ .++  .+..+++|++|++++|.+....+  +..+++|++|++++|.++..  ..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            45556666666555 343  23455666666666665543322  55555666666666555432  2355555566666


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      +++|.+.. .+ .+..+++|+.|++.+|.+.+..+  +..+++|+.|++++|.+...+. +..+++|+.|++++|.+++.
T Consensus       114 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          114 LTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             CTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence            66555542 22 24555556666665555553321  4455555566665555554333 44555555555555555433


Q ss_pred             CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      .+  +..+++|++|++++|.+....  .+..+++|+.|++++|.+.
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            22  445555555555555554222  2455555555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.9e-22  Score=165.53  Aligned_cols=228  Identities=28%  Similarity=0.337  Sum_probs=140.0

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ++|++|++++|+++ .++.    ..++|++|++++|.+.+ .+ .|.++++|++|++++|+++. .+..   ..+|++++
T Consensus       111 ~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~  179 (454)
T 1jl5_A          111 QSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIA  179 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred             CCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEE
Confidence            45666677666665 3332    12689999999999986 33 68999999999999999874 3332   35899999


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      +++|.+.. .+ .+..+++|+.+++.+|.+.+ .+..   .++|+.|++++|.+..++ .+..+++|+++++++|.+++.
T Consensus       180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred             CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcc
Confidence            99999884 45 57889999999998888774 3322   246677777777666444 355666666666666655532


Q ss_pred             Cccch-----------------hcCCCceEEEccCCcccC--CCChhh-------------ccC-CCccEEEeeCCeecc
Q 035481          163 IPIAL-----------------LRSSTLLTLDLRDNKLFG--RIPHQI-------------NEL-SNLHFLLLRGNYLQG  209 (258)
Q Consensus       163 ~~~~~-----------------~~~~~L~~L~l~~~~~~~--~~~~~~-------------~~~-~~L~~L~l~~~~l~~  209 (258)
                      .. ..                 ..+++|+.|++++|.++.  ..+..+             ... ++|++|++++|++.+
T Consensus       253 ~~-~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          253 PD-LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             CS-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC
T ss_pred             cc-cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc
Confidence            11 10                 012344444444444432  111100             011 245555555555442


Q ss_pred             cCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          210 RIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       210 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                       +|..   +++|+.|++++|.++ .+|.   .+++|+.|++++|++++
T Consensus       332 -lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          332 -LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             -CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred             -cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence             2222   355666666666665 3554   35666777777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=4.7e-23  Score=161.13  Aligned_cols=194  Identities=22%  Similarity=0.269  Sum_probs=163.2

Q ss_pred             cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481           25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV  104 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  104 (258)
                      ..+++|++|+++++.+...  +.+..+++|++|++++|.+....+  +..+++|++|++++|.+...  ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            4578999999999988753  367889999999999999875443  88899999999999998743  36788999999


Q ss_pred             EEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCccc
Q 035481          105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLF  184 (258)
Q Consensus       105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  184 (258)
                      |++.+|.+.+. + .+..+++|+.|++++|.+...+. +..+++|++|++++|.+++..+  +..+++|+.|++++|.+.
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            99999998854 3 38889999999999999887654 7788999999999999886543  788999999999999986


Q ss_pred             CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481          185 GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       185 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      ...+  +..+++|+.|++++|++.+..  .+..+++|+.|++++|.+++
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            4433  788999999999999998654  47889999999999999974

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=7e-23  Score=155.68  Aligned_cols=180  Identities=21%  Similarity=0.230  Sum_probs=155.1

Q ss_pred             cccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEc
Q 035481           52 THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDI  131 (258)
Q Consensus        52 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  131 (258)
                      ...++++++++.++ ..|..+  .+.++.|++++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcc-ccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45678899988887 344433  368999999999998777778899999999999999999777778899999999999


Q ss_pred             ccccceeecC-CCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeeccc
Q 035481          132 SENSLSGSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGR  210 (258)
Q Consensus       132 ~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  210 (258)
                      ++|.+...+. .+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|++.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            9999987664 457889999999999999877777788899999999999999877777888999999999999999977


Q ss_pred             CCccccCCCcccEEEccCceeecC
Q 035481          211 IPNQLCQLRKLGIMDLSHNRLNGP  234 (258)
Q Consensus       211 ~~~~l~~~~~L~~l~l~~~~~~~~  234 (258)
                      .+..+..+++|+.|++++|.+.+.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            777888999999999999999753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=7.1e-26  Score=182.76  Aligned_cols=234  Identities=21%  Similarity=0.237  Sum_probs=181.2

Q ss_pred             CCcceEEecCcCccccccCc---ccccCCCCccEEECCCCcccc---ccCcc-------ccCCcccceeecccccccc--
Q 035481            2 MKELITLDLSRNNFSGELSR---PIFSGCPSLETLDLSNNNFYG---QLFPN-------YMNLTHLRSLLLDNNNFSG--   66 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~---~~~~~-------~~~~~~L~~L~l~~~~~~~--   66 (258)
                      +++|++|++++|.+.+..+.   ..+..+++|++|++++|.+..   ..+..       +..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            67899999999998743222   236789999999999975532   22222       3678999999999999875  


Q ss_pred             --cCCcccCCCCCccEEEccCccccCCCC----CcCCCC---------CccceEEecCcccc-CCcC---ccccCCCCcc
Q 035481           67 --KMTDGLLSSTLLEVLNVSNNKLSGDIP----HWIGNF---------SGLWVLLMSENYLQ-GSIP---VQLGNLVCLE  127 (258)
Q Consensus        67 --~~~~~~~~l~~L~~l~l~~~~~~~~~~----~~l~~l---------~~L~~l~l~~~~~~-~~~~---~~~~~~~~L~  127 (258)
                        ..+..+..+++|++|++++|.++...+    ..+..+         ++|++|++.+|.+. ...+   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              244567788999999999998863222    223333         89999999999986 2333   3566788999


Q ss_pred             EEEccccccee-----ec-CCCCCcCCCcEEEeeccccc----ccCccchhcCCCceEEEccCCcccCC----CChhhc-
Q 035481          128 FIDISENSLSG-----SM-VSLSNLSSVEHIYLHNNAIN----GLIPIALLRSSTLLTLDLRDNKLFGR----IPHQIN-  192 (258)
Q Consensus       128 ~L~l~~~~~~~-----~~-~~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~-  192 (258)
                      .|++++|.+..     .. ..+..+++|+.|++++|.++    ...+..+..+++|++|++++|.++..    ++..+. 
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            99999999873     22 36778899999999999986    44566788899999999999998644    345553 


Q ss_pred             -cCCCccEEEeeCCeecc----cCCccc-cCCCcccEEEccCceeecCC
Q 035481          193 -ELSNLHFLLLRGNYLQG----RIPNQL-CQLRKLGIMDLSHNRLNGPI  235 (258)
Q Consensus       193 -~~~~L~~L~l~~~~l~~----~~~~~l-~~~~~L~~l~l~~~~~~~~~  235 (258)
                       .+++|+.|++++|.+.+    .++..+ .++++|++|++++|.+++..
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             38999999999999987    366666 56899999999999998654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=8e-24  Score=165.80  Aligned_cols=225  Identities=17%  Similarity=0.161  Sum_probs=174.1

Q ss_pred             cceEEecCcCccccccCccc--ccCCCCccEEECCCCccccccCccc--cCCcccceeecccccccccCC----cccCCC
Q 035481            4 ELITLDLSRNNFSGELSRPI--FSGCPSLETLDLSNNNFYGQLFPNY--MNLTHLRSLLLDNNNFSGKMT----DGLLSS   75 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l   75 (258)
                      .++.+.+.+..+.+.....+  +...++|++|++++|.+.+..+..+  ..+++|++|++++|.++...+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            35666666665542111111  2235679999999999987777777  789999999999999875333    234568


Q ss_pred             CCccEEEccCccccCCCCCcCCCCCccceEEecCccccCC--c--CccccCCCCccEEEcccccceeecC----CCCCcC
Q 035481           76 TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGS--I--PVQLGNLVCLEFIDISENSLSGSMV----SLSNLS  147 (258)
Q Consensus        76 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~  147 (258)
                      ++|++|++++|.+....+..+..+++|++|++.+|.+.+.  .  +..+..+++|++|++++|.+...+.    .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            8999999999999877778899999999999999987532  1  2234678899999999999865433    235678


Q ss_pred             CCcEEEeecccccccCccchhcC---CCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEE
Q 035481          148 SVEHIYLHNNAINGLIPIALLRS---STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM  224 (258)
Q Consensus       148 ~L~~l~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l  224 (258)
                      +|++|++++|.+++..+..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++.+. |. +..+++|+.|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  299 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL  299 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence            99999999999987766555555   79999999999998 5565553  7999999999999854 33 6788999999


Q ss_pred             EccCceeec
Q 035481          225 DLSHNRLNG  233 (258)
Q Consensus       225 ~l~~~~~~~  233 (258)
                      ++++|++++
T Consensus       300 ~L~~N~l~~  308 (310)
T 4glp_A          300 TLDGNPFLV  308 (310)
T ss_dssp             ECSSTTTSC
T ss_pred             ECcCCCCCC
Confidence            999999873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=5.8e-22  Score=150.58  Aligned_cols=176  Identities=20%  Similarity=0.199  Sum_probs=108.4

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      ..++++++++.++ .+|..+   .++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4566777777777 677654   256777788777777666666777777777777777776655556666777777777


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEeeccccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      ++|.+....+..+..+++|++|++.+|.+++..+..+..+++|+.|++++|.+...+. .+..+++|++|++++|.++..
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            7777665555556666677777776666664444445555666666666555554433 234444555555555544444


Q ss_pred             CccchhcCCCceEEEccCCcc
Q 035481          163 IPIALLRSSTLLTLDLRDNKL  183 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~  183 (258)
                      .+..+..+++|+.|++++|.+
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCB
T ss_pred             CHHHHhCCCCCCEEEeeCCce
Confidence            433444444444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=8.2e-22  Score=166.79  Aligned_cols=218  Identities=23%  Similarity=0.253  Sum_probs=136.7

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      +++.|++++++++ .+|..++   ++|+.|++++|.+..+..    .+++|++|++++|.++. .+.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            4677777777777 6776553   677777777777763322    45677777777777663 222   4566777777


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC-----------------CCc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL-----------------SNL  146 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~  146 (258)
                      ++|.+.. ++.   .+++|+.|++.+|.++. +|..   +++|+.|+++.|.+..++...                 ..+
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~  180 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP  180 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccC
Confidence            7776652 232   34566666666666552 2321   355666666666554433211                 223


Q ss_pred             CCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEc
Q 035481          147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL  226 (258)
Q Consensus       147 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l  226 (258)
                      ++|+.|++++|.+++...    .+++|+.|++++|.++ .++.   .+++|+.|++++|.+++ +|   ..+++|+.|++
T Consensus       181 ~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L  248 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMV  248 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence            556666666666654321    2356666666666665 2332   24778888888888874 44   35578889999


Q ss_pred             cCceeecCCCcccccccchhhhhhcccccCC
Q 035481          227 SHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       227 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ++|.++ .+|.   .+++|+.|++++|.|+.
T Consensus       249 s~N~L~-~lp~---~~~~L~~L~Ls~N~L~~  275 (622)
T 3g06_A          249 SGNRLT-SLPM---LPSGLLSLSVYRNQLTR  275 (622)
T ss_dssp             CSSCCS-CCCC---CCTTCCEEECCSSCCCS
T ss_pred             CCCCCC-cCCc---ccccCcEEeCCCCCCCc
Confidence            998887 5675   66788888899988864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1e-24  Score=172.76  Aligned_cols=234  Identities=16%  Similarity=0.159  Sum_probs=181.9

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccc-cCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQ-LFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      ++++.++++++.+.+ .+... ..+++|++|++++|.+... .+..+..+++|++|++++|.++...+..+..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~-~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQ-PLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECS-CCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccc-cchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            678999999999984 44444 4689999999999988654 55567889999999999999876667778889999999


Q ss_pred             EccCc-cccC-CCCCcCCCCCccceEEecCc-cccCC-cCccccCCC-CccEEEccccc--ce--eecCCCCCcCCCcEE
Q 035481           82 NVSNN-KLSG-DIPHWIGNFSGLWVLLMSEN-YLQGS-IPVQLGNLV-CLEFIDISENS--LS--GSMVSLSNLSSVEHI  152 (258)
Q Consensus        82 ~l~~~-~~~~-~~~~~l~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~l  152 (258)
                      ++++| .++. ..+..+..+++|++|++.+| .+++. .+..+..++ +|+.|++++|.  +.  ..+..+..+++|++|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            99998 4553 24455778999999999999 77643 455677889 99999999994  43  244455678999999


Q ss_pred             Eeeccc-ccccCccchhcCCCceEEEccCCc-ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCce
Q 035481          153 YLHNNA-INGLIPIALLRSSTLLTLDLRDNK-LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR  230 (258)
Q Consensus       153 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~  230 (258)
                      ++++|. +++.....+..+++|++|++++|. +.......+..+++|+.|++++| +.+.....+.  ..+..|++++|.
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~  304 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH  304 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence            999998 666666788899999999999995 32222235788999999999999 4433222222  246677799999


Q ss_pred             eecCCCccccc
Q 035481          231 LNGPIPSCLGN  241 (258)
Q Consensus       231 ~~~~~~~~~~~  241 (258)
                      +++..|..++.
T Consensus       305 l~~~~~~~~~~  315 (336)
T 2ast_B          305 FTTIARPTIGN  315 (336)
T ss_dssp             SCCTTCSSCSS
T ss_pred             CccccCCcccc
Confidence            99888876654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=5.2e-24  Score=170.34  Aligned_cols=231  Identities=21%  Similarity=0.243  Sum_probs=176.1

Q ss_pred             CcceEEecCcCccccccCc----ccccCCC-CccEEECCCCccccccCccccCC-----cccceeecccccccccCCcc-
Q 035481            3 KELITLDLSRNNFSGELSR----PIFSGCP-SLETLDLSNNNFYGQLFPNYMNL-----THLRSLLLDNNNFSGKMTDG-   71 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~-   71 (258)
                      ++|++|++++|.++ ..+.    ..|..++ +|++|++++|.+....+..+..+     ++|++|++++|.++...+.. 
T Consensus        22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            45999999999998 5665    6678888 99999999999987766666554     89999999999987655443 


Q ss_pred             ---cCCC-CCccEEEccCccccCCCCCc----CCC-CCccceEEecCccccCCcCc----cccCCC-CccEEEcccccce
Q 035481           72 ---LLSS-TLLEVLNVSNNKLSGDIPHW----IGN-FSGLWVLLMSENYLQGSIPV----QLGNLV-CLEFIDISENSLS  137 (258)
Q Consensus        72 ---~~~l-~~L~~l~l~~~~~~~~~~~~----l~~-l~~L~~l~l~~~~~~~~~~~----~~~~~~-~L~~L~l~~~~~~  137 (258)
                         +... ++|++|++++|.++...+..    +.. .++|++|++.+|.+......    .+...+ +|+.|++++|.+.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence               3344 79999999999988544433    333 36999999999998754333    344555 9999999999986


Q ss_pred             eecC-----CCCCc-CCCcEEEeeccccccc----Cccchhc-CCCceEEEccCCcccCCCC----hhhccCCCccEEEe
Q 035481          138 GSMV-----SLSNL-SSVEHIYLHNNAINGL----IPIALLR-SSTLLTLDLRDNKLFGRIP----HQINELSNLHFLLL  202 (258)
Q Consensus       138 ~~~~-----~~~~~-~~L~~l~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l  202 (258)
                      ....     .+... ++|++|++++|.+++.    .+..+.. .++|++|++++|.+....+    ..+..+++|++|++
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence            5332     23344 5999999999998863    2334444 5699999999999976544    33466799999999


Q ss_pred             eCCeeccc-------CCccccCCCcccEEEccCceeecC
Q 035481          203 RGNYLQGR-------IPNQLCQLRKLGIMDLSHNRLNGP  234 (258)
Q Consensus       203 ~~~~l~~~-------~~~~l~~~~~L~~l~l~~~~~~~~  234 (258)
                      ++|.+.+.       .+..+..+++|+++|+++|.+...
T Consensus       261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            99984432       234667888999999999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=1.1e-21  Score=156.14  Aligned_cols=239  Identities=15%  Similarity=0.099  Sum_probs=176.3

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCccE-EEc
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEV-LNV   83 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-l~l   83 (258)
                      ++++.++++++ ++|.++   .+++++|++++|+++.+.+.+|.++++|++|++++|++... ...+|..++++.. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46778888888 888776   36789999999999877777899999999999999987543 3456777877765 455


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccc-ccceeecC-CCCCc-CCCcEEEeeccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISE-NSLSGSMV-SLSNL-SSVEHIYLHNNAIN  160 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~-~~L~~l~l~~~~~~  160 (258)
                      ..|.+....+..+..+++|+.+++.+|.+....+..+....++..+++.. +.+...+. .+... ..++.+++++|.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            66788766778888999999999999998866555556666778888865 45555543 33433 46888999999988


Q ss_pred             ccCccchhcCCCceEEEccC-CcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccc
Q 035481          161 GLIPIALLRSSTLLTLDLRD-NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL  239 (258)
Q Consensus       161 ~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~  239 (258)
                      ...+..+ ...+++++++.+ |.+....+.+|.++++|++|++++|+++...+..+   .+|++|.+.++.--+.+|. +
T Consensus       168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l  242 (350)
T 4ay9_X          168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-L  242 (350)
T ss_dssp             EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-T
T ss_pred             CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-c
Confidence            6655444 456889999975 55554555678889999999999999885444444   4566666655543346674 7


Q ss_pred             ccccchhhhhhccc
Q 035481          240 GNVSSWREVIDDYS  253 (258)
Q Consensus       240 ~~l~~L~~l~l~~~  253 (258)
                      ..+++|+.+++.++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            88888888887653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=5.9e-21  Score=151.92  Aligned_cols=222  Identities=18%  Similarity=0.156  Sum_probs=175.4

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCcccc-ccCccccCCcccce-eecccccccccCCcccCCCCCccE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-QLFPNYMNLTHLRS-LLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      +++++|++++|+++ .++.+.|.++++|++|++++|.+.+ +...+|.+++++++ +.+.+|+++...+.++..+++|++
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            46999999999999 8999999999999999999999854 44567888888776 566678888777888999999999


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecC-ccccCCcCccccCCC-CccEEEcccccceeecCCCCCcCCCcEEEeec-c
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSE-NYLQGSIPVQLGNLV-CLEFIDISENSLSGSMVSLSNLSSVEHIYLHN-N  157 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~-~  157 (258)
                      +++++|.+....+..+....++..+++.. +.+....+..+..+. .++.|++++|.+..++.......+++++.+.+ |
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC
Confidence            99999999855555556667788888865 455544444566554 68999999999999887777778899999975 6


Q ss_pred             cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCc
Q 035481          158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN  229 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~  229 (258)
                      .++......+..+++|++|++++|.++...+..   +.+|+.|.+.++...+.+| .+..+++|+.+++.++
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            677666778899999999999999997554443   4566777766664444555 4788999999998754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.4e-20  Score=138.91  Aligned_cols=161  Identities=19%  Similarity=0.263  Sum_probs=98.7

Q ss_pred             CccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEee
Q 035481           77 LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLH  155 (258)
Q Consensus        77 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~  155 (258)
                      ++++++++++.+....+..+..+++|++|++.+|.+.+..+..+..+++|++|++++|.+...+.. +..+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            455555555555433333444555555555555555534333445555566666665555544332 3455666666666


Q ss_pred             cccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCC
Q 035481          156 NNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI  235 (258)
Q Consensus       156 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~  235 (258)
                      +|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.       +.++.|++++++.|.+++.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence            66666555555666777777777777776555555677777888888777554       34567777788888877777


Q ss_pred             Ccccccccc
Q 035481          236 PSCLGNVSS  244 (258)
Q Consensus       236 ~~~~~~l~~  244 (258)
                      |+.++.++.
T Consensus       182 p~~~~~l~~  190 (208)
T 2o6s_A          182 RNSAGSVAP  190 (208)
T ss_dssp             BCTTSSBCT
T ss_pred             eccCccccC
Confidence            777766654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.3e-20  Score=139.12  Aligned_cols=180  Identities=20%  Similarity=0.158  Sum_probs=103.2

Q ss_pred             EEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCc
Q 035481            7 TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNN   86 (258)
Q Consensus         7 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~   86 (258)
                      .++.+++.++ .+|...   .+++++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus        11 ~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           11 TVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            4555566555 455443   346666666666665554445556666666666666655444444455555555555555


Q ss_pred             cccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccc
Q 035481           87 KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIA  166 (258)
Q Consensus        87 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  166 (258)
                      .+....+..+..+++|++|++.+|.+.+..+..+                       ..+++|++|++++|.+++..+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----------------------~~l~~L~~L~l~~N~l~~~~~~~  143 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF-----------------------DKLTQLKDLRLYQNQLKSVPDGV  143 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----------------------TTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh-----------------------ccCCcCCEEECCCCccceeCHHH
Confidence            5543333334445555555555554443333233                       44555555556666555544455


Q ss_pred             hhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCc
Q 035481          167 LLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK  220 (258)
Q Consensus       167 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  220 (258)
                      +..+++|+.|++++|.+.       ..+++|+.|+++.|.+.+.+|..++.++.
T Consensus       144 ~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          144 FDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             hccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            566677777777777653       34567778888888777777777665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=1.9e-20  Score=145.23  Aligned_cols=188  Identities=24%  Similarity=0.360  Sum_probs=152.5

Q ss_pred             cEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCc
Q 035481           31 ETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSEN  110 (258)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~  110 (258)
                      ..+.+....+...  ..+..+++|+.|++++|.+...  ..+..+++|++|++++|.+....+  +..+++|+.|++.+|
T Consensus        27 ~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           27 IKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             HHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence            3345555554322  3345678999999999988744  347788999999999999884433  888999999999999


Q ss_pred             cccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChh
Q 035481          111 YLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ  190 (258)
Q Consensus       111 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  190 (258)
                      .+.+ .+ .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+....+  
T Consensus       101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--  173 (291)
T 1h6t_A          101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  173 (291)
T ss_dssp             CCCC-GG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             cCCC-Ch-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence            9874 33 488899999999999998875 4677889999999999998865  578889999999999999875443  


Q ss_pred             hccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481          191 INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       191 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|++..
T Consensus       174 l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred             hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence            88899999999999999854  358889999999999999974

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=5.3e-20  Score=142.66  Aligned_cols=186  Identities=20%  Similarity=0.280  Sum_probs=152.9

Q ss_pred             ecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccc
Q 035481            9 DLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKL   88 (258)
Q Consensus         9 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~   88 (258)
                      .+....+++..+   +..+++|+.|++++|.+...  +.+..+++|++|++++|.++...+  +..+++|++|++++|.+
T Consensus        30 ~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           30 NLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            444555542222   34578999999999998754  457889999999999999985443  88899999999999998


Q ss_pred             cCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchh
Q 035481           89 SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALL  168 (258)
Q Consensus        89 ~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~  168 (258)
                      .. . ..+..+++|+.|++.+|.+.+.  ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+  +.
T Consensus       103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~  175 (291)
T 1h6t_A          103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LA  175 (291)
T ss_dssp             CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hc
Confidence            74 3 3488899999999999998853  4678899999999999999876 567789999999999999987644  88


Q ss_pred             cCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeeccc
Q 035481          169 RSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGR  210 (258)
Q Consensus       169 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  210 (258)
                      .+++|+.|++++|.++. .+ .+..+++|+.|++++|.+.+.
T Consensus       176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred             CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence            89999999999999974 33 488999999999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=5.9e-20  Score=136.61  Aligned_cols=153  Identities=24%  Similarity=0.226  Sum_probs=123.8

Q ss_pred             ccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEee
Q 035481           78 LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLH  155 (258)
Q Consensus        78 L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~  155 (258)
                      -+.++++++.++ .+|..+  ...++.|++.+|.+.+..+ ..+..+++|+.|++++|.+..... .+..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            357888888877 455544  3456889999988875533 457788899999999998887664 67788889999999


Q ss_pred             cccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481          156 NNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       156 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      +|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            998887777778888899999999998887778888888899999999998887778888888889999999988874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1e-19  Score=152.34  Aligned_cols=186  Identities=25%  Similarity=0.312  Sum_probs=111.4

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      +++.|++++++++ .+|..+   +++|++|++++|.+..+.    ..+++|++|++++|.++. .+. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            5667777777776 466554   256777777777665322    335667777777776664 333 332  6777777


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccC
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLI  163 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  163 (258)
                      ++|.++. +|.   .+++|+.|++.+|.+++ +|.   .+++|+.|++++|.+..++. +.  ++|+.|++++|.++...
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchh
Confidence            7776663 333   46667777777776663 333   35667777777776666554 33  66677777777666332


Q ss_pred             ccchhcCCCc-------eEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccC
Q 035481          164 PIALLRSSTL-------LTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ  217 (258)
Q Consensus       164 ~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~  217 (258)
                      .  +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus       197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          197 A--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             h--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            2  322  45       66666666665 44555555666666666666666555555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.83  E-value=8.1e-20  Score=135.88  Aligned_cols=151  Identities=23%  Similarity=0.254  Sum_probs=127.8

Q ss_pred             cEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecc
Q 035481           79 EVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNN  157 (258)
Q Consensus        79 ~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~  157 (258)
                      +.+++.++.++ .+|..+.  ++++.|++.+|.+.+..+..+..+++|+.|++++|.+... +..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            56778887777 4555443  6899999999998866666888899999999999998876 567888899999999999


Q ss_pred             cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      .++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            998777777888999999999999998777888889999999999999998777778888899999999999887

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.4e-19  Score=151.53  Aligned_cols=189  Identities=25%  Similarity=0.314  Sum_probs=132.5

Q ss_pred             CccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEec
Q 035481           29 SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMS  108 (258)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~  108 (258)
                      +++.|++++|.+.+ .+..+  .++|++|++++|.++ ..+   ..+++|++|++++|.++. +|. +..  +|+.|++.
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            78888888888765 33333  267888888888877 333   346788888888887774 555 443  78888888


Q ss_pred             CccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCC
Q 035481          109 ENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIP  188 (258)
Q Consensus       109 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  188 (258)
                      +|.+++ +|.   .+++|+.|++++|.+..++.   .+++|++|++++|.+++. +. +.  ++|+.|++++|.++ .+|
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCC-chh
Confidence            888775 444   56788888888888776554   457788888888887763 33 43  78888888888876 444


Q ss_pred             hhhccCCCc-------cEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccc
Q 035481          189 HQINELSNL-------HFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS  244 (258)
Q Consensus       189 ~~~~~~~~L-------~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~  244 (258)
                      . +..  +|       +.|++++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            4 333  56       88888888877 46666667888888888888887777766665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=3.2e-20  Score=135.80  Aligned_cols=152  Identities=14%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481           99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL  178 (258)
Q Consensus        99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  178 (258)
                      +++|+.+++.++.+. ..+ .+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            344444444444444 222 344444555555555533322 23445556666666666665544555666677777777


Q ss_pred             cCCcccCCCChhhccCCCccEEEeeCCe-ecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          179 RDNKLFGRIPHQINELSNLHFLLLRGNY-LQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ++|.++...+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|+|++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            7777665556666777777777777776 44 333 56677777777777777763 44 56777777777777777764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=4.9e-20  Score=155.75  Aligned_cols=173  Identities=21%  Similarity=0.270  Sum_probs=104.5

Q ss_pred             cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481           25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV  104 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  104 (258)
                      ..+++|+.|++++|.+...  +.+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.. . ..+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence            3456666666666666432  245666667777776666654332  5566666677666666652 2 24566666677


Q ss_pred             EEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCccc
Q 035481          105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLF  184 (258)
Q Consensus       105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  184 (258)
                      |++.+|.+.+.  ..+..+++|+.|+++.|.+... ..+..+++|+.|++++|.+.+..+  +..+++|+.|+|++|.+.
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            77666666532  3455666666666666666554 445566666666666666654433  556666666666666664


Q ss_pred             CCCChhhccCCCccEEEeeCCeeccc
Q 035481          185 GRIPHQINELSNLHFLLLRGNYLQGR  210 (258)
Q Consensus       185 ~~~~~~~~~~~~L~~L~l~~~~l~~~  210 (258)
                      ..  ..+..+++|+.|++++|.+.+.
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CC--hHHccCCCCCEEEccCCcCcCC
Confidence            32  3456666666666666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=1.5e-20  Score=148.38  Aligned_cols=102  Identities=11%  Similarity=0.072  Sum_probs=89.3

Q ss_pred             cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCcc-EEEeeCCeecccCCccccCCCcccEE
Q 035481          146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH-FLLLRGNYLQGRIPNQLCQLRKLGIM  224 (258)
Q Consensus       146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~l  224 (258)
                      +++|+.+++.+|.++.+...+|.++++|+.+++.++ +......+|.++++|+ .+++.+ .+....+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            689999999999898888889999999999999998 6667788999999999 999998 6666777899999999999


Q ss_pred             EccCceeecCCCcccccccchhhhh
Q 035481          225 DLSHNRLNGPIPSCLGNVSSWREVI  249 (258)
Q Consensus       225 ~l~~~~~~~~~~~~~~~l~~L~~l~  249 (258)
                      +++++.++...+.+|.++++|+.+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            9999998855557899999998775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1.5e-19  Score=152.77  Aligned_cols=203  Identities=23%  Similarity=0.317  Sum_probs=162.7

Q ss_pred             ccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecC
Q 035481           30 LETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSE  109 (258)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~  109 (258)
                      +..+.+..+.+...  ..+..++.|+.|+++++.+...  ..+..+++|+.|++++|.+....+  +..+++|+.|++.+
T Consensus        23 l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccc--cchhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            44556666655433  2345788999999999998743  357889999999999999884433  78899999999999


Q ss_pred             ccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCCh
Q 035481          110 NYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPH  189 (258)
Q Consensus       110 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  189 (258)
                      |.+.+ .+ .+..+++|+.|+++.|.+... ..+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+....+ 
T Consensus        97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             SCCCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence            99874 33 688899999999999999875 4577889999999999999865  678899999999999999975544 


Q ss_pred             hhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhh
Q 035481          190 QINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWRE  247 (258)
Q Consensus       190 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~  247 (258)
                       +..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.+.+.....+..+..+..
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~  225 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT  225 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECC
T ss_pred             -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEeccc
Confidence             88999999999999999854  46889999999999999998543333444444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.5e-19  Score=144.38  Aligned_cols=175  Identities=23%  Similarity=0.227  Sum_probs=141.0

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccCcccc-CCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      +++++++++++ .+|..+   .+.++.|++++|.+....+..|. .+++|++|++++|.++...+..+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            46888888888 788765   35688999999998877777777 88999999999999887777778888999999999


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC----CCcCCCcEEEeeccccc
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL----SNLSSVEHIYLHNNAIN  160 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~  160 (258)
                      +|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+..++...    ..+++|+.|++++|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            99888666667888899999999999988777778888899999999999888766543    46788888999988888


Q ss_pred             ccCccchhcCCC--ceEEEccCCccc
Q 035481          161 GLIPIALLRSST--LLTLDLRDNKLF  184 (258)
Q Consensus       161 ~~~~~~~~~~~~--L~~L~l~~~~~~  184 (258)
                      ......+..++.  ++.|++++|.+.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            766666777766  377888888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.7e-19  Score=144.14  Aligned_cols=175  Identities=25%  Similarity=0.254  Sum_probs=133.9

Q ss_pred             ceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCC-CCCccceEEecCccccCCcCccccCCCCccEEEccc
Q 035481           55 RSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIG-NFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISE  133 (258)
Q Consensus        55 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~  133 (258)
                      +.++++++.++. .|..+  ...++.|++++|.++...+..+. .+++|+.|++.+|.+.+..+..+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            578888887763 44433  34588899999888866666666 788999999998888866667788888899999998


Q ss_pred             ccceeecC-CCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhh---ccCCCccEEEeeCCeecc
Q 035481          134 NSLSGSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI---NELSNLHFLLLRGNYLQG  209 (258)
Q Consensus       134 ~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~  209 (258)
                      |.+...+. .+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+   ..+++|+.|++++|++.+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            88877654 46778888888888888887777788888888888888888875544444   457888888888888876


Q ss_pred             cCCccccCCCc--ccEEEccCceee
Q 035481          210 RIPNQLCQLRK--LGIMDLSHNRLN  232 (258)
Q Consensus       210 ~~~~~l~~~~~--L~~l~l~~~~~~  232 (258)
                      ..+..+..++.  ++.|+|++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            55566666666  477888888876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=9.9e-19  Score=130.00  Aligned_cols=152  Identities=19%  Similarity=0.175  Sum_probs=132.7

Q ss_pred             ceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccc
Q 035481           55 RSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN  134 (258)
Q Consensus        55 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  134 (258)
                      +.++++++.++. .|..+  ..+++.|++++|.+....+..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            578888888773 44433  368999999999998666678899999999999999999777889999999999999999


Q ss_pred             cceeecCC-CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecc
Q 035481          135 SLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQG  209 (258)
Q Consensus       135 ~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  209 (258)
                      .+..++.. +..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99887755 5689999999999999998888899999999999999999987777788999999999999998863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=6.3e-19  Score=131.90  Aligned_cols=154  Identities=21%  Similarity=0.220  Sum_probs=131.9

Q ss_pred             CCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEe
Q 035481           76 TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYL  154 (258)
Q Consensus        76 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l  154 (258)
                      ..-+.++.+++.+. .+|..+  .++|+.|++.+|.+.+..+..+..+++|+.|++++|.+..++.. +..+++|+.|++
T Consensus        19 Cs~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           19 CSGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             EETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EeCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            34667888888777 555544  38899999999999987788899999999999999999877644 578899999999


Q ss_pred             ecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481          155 HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      ++|.++...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            999998877777888999999999999997 677788899999999999999987767788899999999999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=4e-19  Score=129.98  Aligned_cols=153  Identities=17%  Similarity=0.193  Sum_probs=120.1

Q ss_pred             cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481           25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV  104 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  104 (258)
                      ..+++|+.|++++|.+....  .+..+++|++|++++|.++.  ...+..+++|+++++++|.+....+..+..+++|+.
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            45678888888888886332  57778888889988886652  346777888999999888887666777888899999


Q ss_pred             EEecCccccCCcCccccCCCCccEEEccccc-ceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcc
Q 035481          105 LLMSENYLQGSIPVQLGNLVCLEFIDISENS-LSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL  183 (258)
Q Consensus       105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  183 (258)
                      |++.+|.+.+..+..+..+++|+.|++++|. +...+ .+..+++|++|++++|.+++..  .+..+++|+.|++++|.+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            9999888886667778888899999999887 66554 6778888999999999887643  677888999999999886


Q ss_pred             c
Q 035481          184 F  184 (258)
Q Consensus       184 ~  184 (258)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=2.6e-18  Score=127.69  Aligned_cols=150  Identities=17%  Similarity=0.219  Sum_probs=88.7

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccC-ccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLF-PNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      ++++++++.++ .+|..+   .+.+++|++++|.+....+ ..|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            35677777776 566544   3345677777777665533 345666777777777776665555556666666666666


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecccc
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAI  159 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~  159 (258)
                      +|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+... +..+..+++|+.+++++|.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            6666644444556666666666666666655555555555666666555555443 23344444455555544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.79  E-value=3.3e-21  Score=163.66  Aligned_cols=91  Identities=13%  Similarity=-0.013  Sum_probs=58.7

Q ss_pred             hhcCCCceEEEccCCc--ccCCCChhh-ccCCCccEEEeeCCeecccC-CccccCCCcccEEEccCceeecC-CCccccc
Q 035481          167 LLRSSTLLTLDLRDNK--LFGRIPHQI-NELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMDLSHNRLNGP-IPSCLGN  241 (258)
Q Consensus       167 ~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~-~~~~~~~  241 (258)
                      +..+++|+.|++++|.  ++......+ ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++.....
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            3445666666665433  222212222 23677888888888776532 34456788899999999887643 3444567


Q ss_pred             ccchhhhhhcccccCC
Q 035481          242 VSSWREVIDDYSLLSG  257 (258)
Q Consensus       242 l~~L~~l~l~~~~~~~  257 (258)
                      +++|+.|++++|++++
T Consensus       512 l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CSSCCEEEEESCBCCT
T ss_pred             cCccCeeECcCCcCCH
Confidence            8889999999998875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=5e-19  Score=135.13  Aligned_cols=170  Identities=21%  Similarity=0.277  Sum_probs=114.3

Q ss_pred             CCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEE
Q 035481           27 CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL  106 (258)
Q Consensus        27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~  106 (258)
                      +.++..++++++.+....  .+..+++|++|++++|.++.. + .+..+++|++|++++|.+.... . +..+++|+.|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEE
Confidence            344666677777765433  466777888888888877633 2 5667778888888887776333 2 67777888888


Q ss_pred             ecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCC
Q 035481          107 MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR  186 (258)
Q Consensus       107 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  186 (258)
                      +.+|.+.+. +. +.. ++|+.|++++|.+.... .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+...
T Consensus        92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence            887777643 32 222 67777777777776643 466677777777777777654  2566677777777777777544


Q ss_pred             CChhhccCCCccEEEeeCCeeccc
Q 035481          187 IPHQINELSNLHFLLLRGNYLQGR  210 (258)
Q Consensus       187 ~~~~~~~~~~L~~L~l~~~~l~~~  210 (258)
                        ..+..+++|+.|++++|.+...
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --HHhccCCCCCEEeCCCCcccCC
Confidence              5566677777777777776643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=1.3e-20  Score=160.13  Aligned_cols=253  Identities=14%  Similarity=0.050  Sum_probs=111.0

Q ss_pred             CCcceEEecCcCcccccc---CcccccCCCCccEEECCCCcccccc----CccccCCcccceeecccccccccCCcccCC
Q 035481            2 MKELITLDLSRNNFSGEL---SRPIFSGCPSLETLDLSNNNFYGQL----FPNYMNLTHLRSLLLDNNNFSGKMTDGLLS   74 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~   74 (258)
                      |++|++|++++|.+++.-   ....+.++++|+.|+++++.+....    +..+.++++|++|++++|.+.. .+..+..
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence            456666666666554221   1112344566666666666554111    1223345666666666655442 2233344


Q ss_pred             CCCccEEEccCcccc---CCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee--cCCCCCc---
Q 035481           75 STLLEVLNVSNNKLS---GDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS--MVSLSNL---  146 (258)
Q Consensus        75 l~~L~~l~l~~~~~~---~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~---  146 (258)
                      +++|+.++++.....   ......+..+++|+.+.+.+.... ..+..+..+++|+.|++++|.+...  ...+..+   
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            445555554421111   111122333444444444332211 2333334444555555555443221  1112333   


Q ss_pred             ---------------------CCCcEEEeec-----------cccccc-CccchhcCCCceEEEccCCcccCCCChhhcc
Q 035481          147 ---------------------SSVEHIYLHN-----------NAINGL-IPIALLRSSTLLTLDLRDNKLFGRIPHQINE  193 (258)
Q Consensus       147 ---------------------~~L~~l~l~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  193 (258)
                                           ++|++|++.+           +.++.. .......+++|++|+++.+.++......+..
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence                                 4455555542           222211 1111233455555555444443322223332


Q ss_pred             -CCCccEEEee----CCeeccc-----CCccccCCCcccEEEccCce--eecCCCcccc-cccchhhhhhcccccC
Q 035481          194 -LSNLHFLLLR----GNYLQGR-----IPNQLCQLRKLGIMDLSHNR--LNGPIPSCLG-NVSSWREVIDDYSLLS  256 (258)
Q Consensus       194 -~~~L~~L~l~----~~~l~~~-----~~~~l~~~~~L~~l~l~~~~--~~~~~~~~~~-~l~~L~~l~l~~~~~~  256 (258)
                       +++|+.|+++    .+.+++.     ++..+..+++|++|++++|.  +++..+..+. .+++|+.|++++|.++
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~  476 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES  476 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence             5566666664    2233321     11224456666666665433  3322222222 3677777777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.78  E-value=2.5e-17  Score=132.85  Aligned_cols=238  Identities=7%  Similarity=0.016  Sum_probs=152.0

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      +|+.+.+.++ ++ .++..+|.++ +|+.+.+.. .+..+...+|.+|++|+.+++.++.++.....+|. ..+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            3555555544 44 5666666653 466666664 45555566667777777777776666655445554 466777776


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeeccccc--
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAIN--  160 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~--  160 (258)
                      ..+ +.......|..+++|+.+.+..+ ++.....+|.. .+|+.+.+..+ +..+ ...+..|++|+.+.+.++.+.  
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            543 44344556667777777777653 33233445555 56777777433 3333 456677888888888777654  


Q ss_pred             ---ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481          161 ---GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS  237 (258)
Q Consensus       161 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~  237 (258)
                         ......|.+|++|+.+.+.++ +......+|.+|++|+.+.+..+ +......+|.+| +|+.+.+.+|......+.
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             cccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence               456677888888888888843 55566677888888888888665 444566788888 888888888876644445


Q ss_pred             cccccc-chhhhhhccc
Q 035481          238 CLGNVS-SWREVIDDYS  253 (258)
Q Consensus       238 ~~~~l~-~L~~l~l~~~  253 (258)
                      .|..++ .++.|.+-.+
T Consensus       364 ~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          364 VWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             SCCCSCTTCCEEEECGG
T ss_pred             cccCCCCCccEEEeCHH
Confidence            566664 5555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=9e-18  Score=125.60  Aligned_cols=154  Identities=19%  Similarity=0.235  Sum_probs=131.1

Q ss_pred             ccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcc
Q 035481           53 HLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDIS  132 (258)
Q Consensus        53 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~  132 (258)
                      .-+.++++++.++ ..|..+  .++|++|++++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|+++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            4567888888776 344433  4889999999999997778889999999999999999986666678899999999999


Q ss_pred             cccceeecCC-CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeeccc
Q 035481          133 ENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGR  210 (258)
Q Consensus       133 ~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  210 (258)
                      +|.+...+.. +..+++|++|++++|.++ .++..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            9999887654 578999999999999998 4566778999999999999999877777889999999999999988743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=1.8e-18  Score=132.09  Aligned_cols=168  Identities=25%  Similarity=0.295  Sum_probs=114.1

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      ++..++++++.++ .++  .+..+++|++|++++|.+...  +.+..+++|++|++++|.++...+  +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3445566667666 344  245677778888887777643  256677778888888777764433  667777888888


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccC
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLI  163 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  163 (258)
                      ++|.+.. .+... . ++|+.|++.+|.+++.  ..+..+++|+.|++++|.+.+.+ .+..+++|+.|++++|.+++. 
T Consensus        93 ~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-  165 (263)
T 1xeu_A           93 NRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-  165 (263)
T ss_dssp             CSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred             CCCccCC-cCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence            8777763 33222 2 7778888877777643  24677777888888877776654 566677788888888777755 


Q ss_pred             ccchhcCCCceEEEccCCcccCC
Q 035481          164 PIALLRSSTLLTLDLRDNKLFGR  186 (258)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~  186 (258)
                       ..+..+++|+.|++++|.+...
T Consensus       166 -~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          166 -GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -HHhccCCCCCEEeCCCCcccCC
Confidence             5566777788888887777533

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=3.4e-19  Score=140.63  Aligned_cols=110  Identities=11%  Similarity=0.069  Sum_probs=85.7

Q ss_pred             cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCccc-EE
Q 035481          146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLG-IM  224 (258)
Q Consensus       146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~-~l  224 (258)
                      ..++..+.+.++-...........+++|+.+++++|.++.....+|.++++|+.|++.+| +....+.+|.+|.+|+ .+
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence            345556666554322111122234899999999999998888889999999999999998 6667788999999999 99


Q ss_pred             EccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          225 DLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       225 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ++.+ .++...+.+|.+|++|+.|++++|.++.
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            9998 6664456889999999999998888753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.76  E-value=4.1e-17  Score=131.60  Aligned_cols=239  Identities=13%  Similarity=0.114  Sum_probs=186.7

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      .++.+.+.+. ++ .++..+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|..+.+|+.+++
T Consensus       114 ~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          114 GYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            4555555443 55 6778888886 7999999876 777778888885 799999986 566677788999999999999


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeeccccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGL  162 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~  162 (258)
                      ..+.+.......+. +.+|+.+.+..+ +......+|..|++|+.+++..+ +..+. ..+.. ..|+.+.+. +.++.+
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I  262 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI  262 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence            98888755445554 689999999754 55456678899999999999875 44433 34445 789999995 446667


Q ss_pred             CccchhcCCCceEEEccCCccc-----CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481          163 IPIALLRSSTLLTLDLRDNKLF-----GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS  237 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~  237 (258)
                      ...+|.++++|+.+.+.++...     .....+|.+|++|+.+.+..+ +......+|.+|.+|+.+.|..+ ++.....
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence            7889999999999999988764     366678999999999999954 66677789999999999999665 5534467


Q ss_pred             ccccccchhhhhhcccccC
Q 035481          238 CLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       238 ~~~~l~~L~~l~l~~~~~~  256 (258)
                      +|.++ +|+.+.+.+|.+.
T Consensus       341 aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCC
T ss_pred             hCCCC-CCCEEEEcCCCCc
Confidence            89999 9999999988653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=5.5e-18  Score=123.29  Aligned_cols=129  Identities=21%  Similarity=0.257  Sum_probs=98.0

Q ss_pred             ceEEecCccccCCcCccccCCCCccEEEcccccceeecCC--CCCcCCCcEEEeecccccccCccchhcCCCceEEEccC
Q 035481          103 WVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS--LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD  180 (258)
Q Consensus       103 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~  180 (258)
                      +.+++.++.+. .+|..+.  .+++.|++++|.+...+..  +..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67777777776 4555443  3788888888888766543  66778888888888888777777777888888888888


Q ss_pred             CcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecC
Q 035481          181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP  234 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~  234 (258)
                      |.++...+..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            888766666777788888888888888777777777888888888888887643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.74  E-value=1.5e-20  Score=159.69  Aligned_cols=253  Identities=13%  Similarity=0.111  Sum_probs=140.6

Q ss_pred             CCcceEEecCcCccccccC---cccccCCCCccEEECCCCc--cccccCcc-ccCCcccceeeccccc------------
Q 035481            2 MKELITLDLSRNNFSGELS---RPIFSGCPSLETLDLSNNN--FYGQLFPN-YMNLTHLRSLLLDNNN------------   63 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~--~~~~~~~~-~~~~~~L~~L~l~~~~------------   63 (258)
                      +++|++|++++|.+++..+   ......+++|+.|++++|.  +....... +..+++|++|++++|.            
T Consensus       155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~  234 (594)
T 2p1m_B          155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA  234 (594)
T ss_dssp             CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred             CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence            6889999999888763221   1223456788888888775  21111111 1235666666666551            


Q ss_pred             --------------------------------------cccc----CCcccCCCCCccEEEccCccccCC-CCCcCCCCC
Q 035481           64 --------------------------------------FSGK----MTDGLLSSTLLEVLNVSNNKLSGD-IPHWIGNFS  100 (258)
Q Consensus        64 --------------------------------------~~~~----~~~~~~~l~~L~~l~l~~~~~~~~-~~~~l~~l~  100 (258)
                                                            +...    .+..+..+++|++|+++++.++.. ....+..++
T Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~  314 (594)
T 2p1m_B          235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP  314 (594)
T ss_dssp             TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred             CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence                                                  0000    001111357888888888775421 122245677


Q ss_pred             ccceEEecCccccCC-cCccccCCCCccEEEc----------------------------------ccccceee-cCCCC
Q 035481          101 GLWVLLMSENYLQGS-IPVQLGNLVCLEFIDI----------------------------------SENSLSGS-MVSLS  144 (258)
Q Consensus       101 ~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l----------------------------------~~~~~~~~-~~~~~  144 (258)
                      +|+.|.+.++ +... .+.....+++|+.|++                                  ..+.+... ...+.
T Consensus       315 ~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~  393 (594)
T 2p1m_B          315 KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA  393 (594)
T ss_dssp             TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence            7777777765 2211 1111223555666655                                  22222211 01111


Q ss_pred             -CcCCCcEEEee--c----cccccc-----CccchhcCCCceEEEccCCcccCCCChhhcc-CCCccEEEeeCCeecccC
Q 035481          145 -NLSSVEHIYLH--N----NAINGL-----IPIALLRSSTLLTLDLRDNKLFGRIPHQINE-LSNLHFLLLRGNYLQGRI  211 (258)
Q Consensus       145 -~~~~L~~l~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~  211 (258)
                       .+++|+.+++.  +    +.++..     ....+..+++|+.|++++ .++......+.. +++|+.|++++|.+++..
T Consensus       394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~  472 (594)
T 2p1m_B          394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG  472 (594)
T ss_dssp             HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred             hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence             34566666666  2    223311     111244566777777765 333222233333 788888999888876554


Q ss_pred             Cccc-cCCCcccEEEccCceeecCCC-cccccccchhhhhhcccccC
Q 035481          212 PNQL-CQLRKLGIMDLSHNRLNGPIP-SCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       212 ~~~l-~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +..+ ..+++|++|++++|.+++... .....+++|+.|++++|+++
T Consensus       473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            4444 568899999999998864333 24456889999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=1e-17  Score=119.32  Aligned_cols=132  Identities=20%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             CccceEEecCcccc-CCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481          100 SGLWVLLMSENYLQ-GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL  178 (258)
Q Consensus       100 ~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  178 (258)
                      ++|+.|++.+|.+. +.++..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            45666666665554 34444445555555555555555444 44445555555555555555434444444555555555


Q ss_pred             cCCcccCCCC-hhhccCCCccEEEeeCCeecccCC---ccccCCCcccEEEccCceee
Q 035481          179 RDNKLFGRIP-HQINELSNLHFLLLRGNYLQGRIP---NQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       179 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++|.++.... ..+..+++|+.|++++|.+.+..+   ..+..+++|++|++++|.+.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555542211 344455555555555555543322   24445555555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=2.8e-17  Score=117.02  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=99.1

Q ss_pred             CCCccEEEcccccce--eecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEE
Q 035481          123 LVCLEFIDISENSLS--GSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFL  200 (258)
Q Consensus       123 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  200 (258)
                      .++|+.|++++|.+.  .++..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            467888888888877  5666667778888888888887755  666777888888888888876567777778888888


Q ss_pred             EeeCCeecccC-CccccCCCcccEEEccCceeecCCCc----ccccccchhhhhhcccccCC
Q 035481          201 LLRGNYLQGRI-PNQLCQLRKLGIMDLSHNRLNGPIPS----CLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       201 ~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~  257 (258)
                      ++++|.+.+.. +..+..+++|+.|++++|.+++ ++.    .+..+++|+.|++.+|.++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence            88888877532 2567778888888888888874 444    67788888888888887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.7e-20  Score=157.53  Aligned_cols=203  Identities=20%  Similarity=0.133  Sum_probs=139.8

Q ss_pred             cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481           25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV  104 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  104 (258)
                      ..+++|+.|++++|.+. ..|..+..+++|+.|+++++......+..      +..     .......+..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------l~~-----~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL------MRA-----LDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HHH-----HCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH------HHh-----cccccCCHHHHHHHHhccc
Confidence            45788999999999886 55777888899999998765311000000      000     0011122333334444444


Q ss_pred             EE--------------ecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcC
Q 035481          105 LL--------------MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRS  170 (258)
Q Consensus       105 l~--------------l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  170 (258)
                      |+              +.++.+... +     ...|+.|++++|.+..++. +..+++|+.|++++|.++ .+|..+..+
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             Ccchhhcccchhhhhhhhccccccc-C-----ccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence            43              333333211 1     1247888998888887765 788889999999999888 456788889


Q ss_pred             CCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccC-CccccCCCcccEEEccCceeecCCCc---ccccccchh
Q 035481          171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMDLSHNRLNGPIPS---CLGNVSSWR  246 (258)
Q Consensus       171 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~~~~---~~~~l~~L~  246 (258)
                      ++|+.|++++|.++. +| .+..+++|+.|++++|.+.+.. |..+..+++|+.|+|++|.+++..+.   .+..+++|+
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            999999999999874 55 7888999999999999998766 88899999999999999999854332   123367777


Q ss_pred             hhh
Q 035481          247 EVI  249 (258)
Q Consensus       247 ~l~  249 (258)
                      .|+
T Consensus       564 ~L~  566 (567)
T 1dce_A          564 SIL  566 (567)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.7e-20  Score=157.67  Aligned_cols=192  Identities=19%  Similarity=0.091  Sum_probs=131.8

Q ss_pred             cCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccE
Q 035481           49 MNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEF  128 (258)
Q Consensus        49 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  128 (258)
                      ..++.|+.|++++|.++ ..|..+..+.+|+.++++++......+.      .+..     ....+..+..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~------ll~~-----~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL------LMRA-----LDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHHH-----HCTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH------HHHh-----cccccCCHHHHHHHHhccc
Confidence            45778888888888876 5567777788888888765432101110      0111     1122345556666666766


Q ss_pred             EE-cccccceeecC------CCC--CcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccE
Q 035481          129 ID-ISENSLSGSMV------SLS--NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHF  199 (258)
Q Consensus       129 L~-l~~~~~~~~~~------~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  199 (258)
                      |+ ++.+.+.....      .+.  ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  490 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV  490 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred             CcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence            66 44443221110      000  113578888888888764 33 788888889999988887 67778888888999


Q ss_pred             EEeeCCeecccCCccccCCCcccEEEccCceeecCC-CcccccccchhhhhhcccccCC
Q 035481          200 LLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI-PSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       200 L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      |++++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|++++|++++
T Consensus       491 L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          491 LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            9998888885 45 7888888889999988888654 7888888889999998888875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.70  E-value=4.6e-20  Score=156.71  Aligned_cols=87  Identities=16%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             cCCCCccEEECCCCccccccCcccc-CCcccceeecccc-ccccc-CCcccCCCCCccEEEccCccccCCCC----CcCC
Q 035481           25 SGCPSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLDNN-NFSGK-MTDGLLSSTLLEVLNVSNNKLSGDIP----HWIG   97 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~----~~l~   97 (258)
                      ..+++|++|++++|.++......+. .+++|++|++++| .++.. .+.....+++|++|++++|.++...+    ....
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            3456666666666655443333343 4566666666665 33211 11122245666666666665442221    1222


Q ss_pred             CCCccceEEecCcc
Q 035481           98 NFSGLWVLLMSENY  111 (258)
Q Consensus        98 ~l~~L~~l~l~~~~  111 (258)
                      .+++|+.|++.++.
T Consensus       182 ~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          182 TYTSLVSLNISCLA  195 (594)
T ss_dssp             TCCCCCEEECTTCC
T ss_pred             cCCcCcEEEecccC
Confidence            45566666665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=1e-16  Score=115.15  Aligned_cols=129  Identities=20%  Similarity=0.180  Sum_probs=96.6

Q ss_pred             cceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccccCccchhcCCCceEEEccC
Q 035481          102 LWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD  180 (258)
Q Consensus       102 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~  180 (258)
                      .+.+++.++.+. .+|..+  .++|+.|++++|.+...+.. +..+++|++|++++|.++...+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            567777777776 334332  36788888888888765543 46778888888888888776666677888888888888


Q ss_pred             CcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481          181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       181 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      |.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            88876666667778888888888888876655566778888888888888774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.4e-16  Score=115.92  Aligned_cols=127  Identities=25%  Similarity=0.241  Sum_probs=99.0

Q ss_pred             ceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCc
Q 035481          103 WVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK  182 (258)
Q Consensus       103 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  182 (258)
                      +.+++.++.++ .+|..+  .++++.|++++|.+..++..+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            56777777776 445443  357888888888887777777778888888888888887777778888888888888888


Q ss_pred             ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            87777777888888888888888887666667778888888888888876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=2.9e-17  Score=114.57  Aligned_cols=126  Identities=16%  Similarity=0.157  Sum_probs=77.0

Q ss_pred             CCccEEEcccccce--eecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEE
Q 035481          124 VCLEFIDISENSLS--GSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLL  201 (258)
Q Consensus       124 ~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  201 (258)
                      ++++.|++++|.+.  ..+..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34555555555554  3444445555566666666655543  4455666677777777776655666666677777777


Q ss_pred             eeCCeeccc-CCccccCCCcccEEEccCceeecCCC---cccccccchhhhhhc
Q 035481          202 LRGNYLQGR-IPNQLCQLRKLGIMDLSHNRLNGPIP---SCLGNVSSWREVIDD  251 (258)
Q Consensus       202 l~~~~l~~~-~~~~l~~~~~L~~l~l~~~~~~~~~~---~~~~~l~~L~~l~l~  251 (258)
                      +++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777776642 23566677777777777777764333   356677777777665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=4.8e-16  Score=113.01  Aligned_cols=128  Identities=20%  Similarity=0.250  Sum_probs=97.5

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccCc-cccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFP-NYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      +++++++++++ .+|..++   +++++|++++|.+....+. .|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            57888888887 7777653   3788888888888765553 37778888888888888876667777788888888888


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccce
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS  137 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  137 (258)
                      +|.+....+..+..+++|++|++.+|.+++..+..+..+++|+.|++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            88887666666777888888888888877666777777777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1e-17  Score=144.75  Aligned_cols=141  Identities=23%  Similarity=0.305  Sum_probs=84.1

Q ss_pred             CcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCC
Q 035481           69 TDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSS  148 (258)
Q Consensus        69 ~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  148 (258)
                      +..+..+..|+.|++++|.+. .++..+..+++|+.|++.+|.++ .+|..+..+++|+.|++++|.+..++..+..+++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            444556666777777776665 45555556677777777777666 5566666667777777777776666666666677


Q ss_pred             CcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCC-CccEEEeeCCeecccCC
Q 035481          149 VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELS-NLHFLLLRGNYLQGRIP  212 (258)
Q Consensus       149 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~  212 (258)
                      |++|++++|.++. ++..+..+++|+.|+|++|.++...+..+.... ....+++++|.+.+.+|
T Consensus       295 L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          295 LKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            7777777776653 344466667777777777776655554443321 11224555555554444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=1.4e-16  Score=111.06  Aligned_cols=128  Identities=20%  Similarity=0.237  Sum_probs=87.6

Q ss_pred             CccceEEecCcccc-CCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481          100 SGLWVLLMSENYLQ-GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL  178 (258)
Q Consensus       100 ~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l  178 (258)
                      ++++.+++.+|.+. +..+..+..+++|+.|++++|.+... ..+..+++|+++++++|.+++..+..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45556666655554 34455555566666666666666555 45566677777777777776655666666788888888


Q ss_pred             cCCcccCC-CChhhccCCCccEEEeeCCeecccCC---ccccCCCcccEEEccC
Q 035481          179 RDNKLFGR-IPHQINELSNLHFLLLRGNYLQGRIP---NQLCQLRKLGIMDLSH  228 (258)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~l~l~~  228 (258)
                      ++|.++.. .+..+..+++|++|++++|.+.+..+   ..+..+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            88887642 23667788888888888888876554   4677888888888763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.1e-15  Score=111.22  Aligned_cols=126  Identities=27%  Similarity=0.311  Sum_probs=105.9

Q ss_pred             cEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecc
Q 035481           79 EVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNN  157 (258)
Q Consensus        79 ~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~  157 (258)
                      +.++++++.+. .+|..+  .++++.|++.+|.++ .++..+..+++|+.|++++|.+.... ..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57888888877 555544  368999999999988 66678888999999999999998765 45778899999999999


Q ss_pred             cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      .++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            998888888889999999999999998666667888999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.65  E-value=1.3e-16  Score=114.47  Aligned_cols=133  Identities=17%  Similarity=0.171  Sum_probs=92.0

Q ss_pred             CCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceE
Q 035481           96 IGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT  175 (258)
Q Consensus        96 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  175 (258)
                      +..+++|+.+++.+|.+.. ++......++|+.|++++|.+... ..+..+++|+++++++|.+++..+..+..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            4567788888888887773 343223334788888888877766 56677777888888888777665555577777888


Q ss_pred             EEccCCcccCCCCh--hhccCCCccEEEeeCCeecccCCc----cccCCCcccEEEccCceee
Q 035481          176 LDLRDNKLFGRIPH--QINELSNLHFLLLRGNYLQGRIPN----QLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       176 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~l~l~~~~~~  232 (258)
                      |++++|.+. ..+.  .+..+++|+.|++++|.+.+ .+.    .+..+++|+.||+++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888877774 3333  56677777777777777763 343    3667777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=1.1e-16  Score=138.53  Aligned_cols=118  Identities=19%  Similarity=0.302  Sum_probs=55.8

Q ss_pred             cccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCcc
Q 035481          119 QLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH  198 (258)
Q Consensus       119 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  198 (258)
                      .+..+..|+.|++++|.+..++..+..++.|++|++++|.++ .++..+..+++|++|+|++|.++ .+|..+..+++|+
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  296 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK  296 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred             hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence            344444445555544444444433444445555555555444 33344444555555555555554 3344455555555


Q ss_pred             EEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccc
Q 035481          199 FLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL  239 (258)
Q Consensus       199 ~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~  239 (258)
                      +|+|++|.+. .+|..|..+++|+.|+|++|.+++.+|..+
T Consensus       297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            5555555544 334445555555555555555544444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=8.8e-15  Score=104.93  Aligned_cols=129  Identities=19%  Similarity=0.166  Sum_probs=89.7

Q ss_pred             ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      .+.+++++++++ .+|...   .++++.|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            356777777777 666544   3678888888888776666667777888888888887775555556677777777777


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccce
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS  137 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  137 (258)
                      +|.++...+..+..+++|+.+++.+|.+++..+..+..+++|+.|++++|.+.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            77777555555667777777777777776544444566677777777666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=1.8e-15  Score=108.44  Aligned_cols=130  Identities=17%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             CCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC-CCcCCCcEE
Q 035481           74 SSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL-SNLSSVEHI  152 (258)
Q Consensus        74 ~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l  152 (258)
                      .+.+|+.+++++|.+. .++......++|+.|++.+|.+.+.  ..+..+++|+.|++++|.+...+..+ ..+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            3445555555555554 2222222222555555555555432  34455555555555555555444333 445555555


Q ss_pred             EeecccccccCc-cchhcCCCceEEEccCCcccCCCCh----hhccCCCccEEEeeCCee
Q 035481          153 YLHNNAINGLIP-IALLRSSTLLTLDLRDNKLFGRIPH----QINELSNLHFLLLRGNYL  207 (258)
Q Consensus       153 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l  207 (258)
                      ++++|.+..... ..+..+++|+.|++++|.+.. .+.    .+..+++|+.|++++|..
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            555555543221 244455555555555555542 222    244555555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.59  E-value=7.6e-14  Score=112.68  Aligned_cols=244  Identities=12%  Similarity=0.076  Sum_probs=126.3

Q ss_pred             CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccc-----------------
Q 035481            1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN-----------------   63 (258)
Q Consensus         1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----------------   63 (258)
                      +|.+|+.+.+..+ ++ .+...+|.+|.+|+.+++..+ +..+...+|.++..|+.+.+..+-                 
T Consensus        69 ~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           69 GCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             TCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence            3667777777643 66 677777888888888888654 444555666666666655443220                 


Q ss_pred             ----ccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCC---------------
Q 035481           64 ----FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV---------------  124 (258)
Q Consensus        64 ----~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~---------------  124 (258)
                          .......+|..+.+|+.+.+..+... .....+..+.+|+.+.+..+ +.......+..+.               
T Consensus       146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~  223 (394)
T 4fs7_A          146 IPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG  223 (394)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC
T ss_pred             cCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee
Confidence                01112234556667777776543222 33344555666666655432 1111111222222               


Q ss_pred             -------CccEEEcccccceeecCCCCCcCCCcEEEeeccccc--------------------ccCccchhcCCCceEEE
Q 035481          125 -------CLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN--------------------GLIPIALLRSSTLLTLD  177 (258)
Q Consensus       125 -------~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------------------~~~~~~~~~~~~L~~L~  177 (258)
                             .|+.+.+......-....+..+..++.+.+..+...                    ......+..+.+|+.+.
T Consensus       224 ~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~  303 (394)
T 4fs7_A          224 DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVK  303 (394)
T ss_dssp             TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEE
T ss_pred             hhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccc
Confidence                   233333221111101122334444554444333110                    01223455566666666


Q ss_pred             ccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcc
Q 035481          178 LRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDY  252 (258)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~  252 (258)
                      +.++ +......+|.++++|+.+++..+ +......+|.+|.+|+.+++..+ ++.....+|.+|++|+.+.+..
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            6544 33344556677777777777544 44444566777777777777655 4433345677777777666643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=2.4e-17  Score=120.52  Aligned_cols=110  Identities=21%  Similarity=0.260  Sum_probs=51.1

Q ss_pred             cCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCce
Q 035481           95 WIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLL  174 (258)
Q Consensus        95 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~  174 (258)
                      .+..+++|+.|++.+|.+.+ ++ .+..+++|+.|++++|.+..++..+..+++|++|++++|.+++..  .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence            44455555555555555543 33 444455555555555555444333333445555555555444321  234444455


Q ss_pred             EEEccCCcccCCCC-hhhccCCCccEEEeeCCeec
Q 035481          175 TLDLRDNKLFGRIP-HQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       175 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~  208 (258)
                      +|++++|.+..... ..+..+++|++|++++|.+.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            55555544432111 23444444555555544443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.55  E-value=1.6e-13  Score=110.77  Aligned_cols=220  Identities=15%  Similarity=0.089  Sum_probs=137.9

Q ss_pred             cCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccc----------
Q 035481           19 LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKL----------   88 (258)
Q Consensus        19 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~----------   88 (258)
                      +...+|.++++|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.....++..+..|+.+.+..+..          
T Consensus       153 i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~  230 (394)
T 4fs7_A          153 IGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT  230 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred             cchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence            34455666666666666543 22344555666666666665543 2223333444444444443332211          


Q ss_pred             -----------cCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecc
Q 035481           89 -----------SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNN  157 (258)
Q Consensus        89 -----------~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~  157 (258)
                                 .......+..+..++.+.+..+... .....+..+..++.+......+.  ...+..+.+|+.+.+..+
T Consensus       231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT
T ss_pred             CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--cccccccccccccccccc
Confidence                       1122234445556666665544332 33345556666666655443321  235667889999998765


Q ss_pred             cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481          158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS  237 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~  237 (258)
                       +..+...+|.++.+|+.+++.++ ++.....+|.+|++|+.+.+..+ +......+|.+|.+|+.+++..+ ++ .+..
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~  382 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRY  382 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGG
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhh
Confidence             55567788999999999999865 55567789999999999999877 55566789999999999999765 32 3456


Q ss_pred             ccccccchhhh
Q 035481          238 CLGNVSSWREV  248 (258)
Q Consensus       238 ~~~~l~~L~~l  248 (258)
                      +|.++++|+.+
T Consensus       383 ~F~~c~~L~~I  393 (394)
T 4fs7_A          383 DFEDTTKFKWI  393 (394)
T ss_dssp             GBCTTCEEEEE
T ss_pred             eecCCCCCcEE
Confidence            78899988764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=1.2e-14  Score=103.48  Aligned_cols=106  Identities=25%  Similarity=0.268  Sum_probs=88.8

Q ss_pred             ccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481          126 LEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN  205 (258)
Q Consensus       126 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  205 (258)
                      .+.++++++.+..++..+.  +.+++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            5788888888887776553  78899999999988877888888899999999999988777777788899999999999


Q ss_pred             eecccCCccccCCCcccEEEccCceeec
Q 035481          206 YLQGRIPNQLCQLRKLGIMDLSHNRLNG  233 (258)
Q Consensus       206 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~  233 (258)
                      ++.+..+..+..+++|++|+|++|.++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            8887666678888999999999998873

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.54  E-value=4e-13  Score=108.45  Aligned_cols=78  Identities=13%  Similarity=0.255  Sum_probs=43.8

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCC---ccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNN---NFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      .|+.+.+.+. ++ .+...+|.+|.+|+.+.+..+   .+..+...+|.++.+|+.+.+..+ ++.....++..+.+|+.
T Consensus        65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred             cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence            3666666543 55 667777777777777777643   244455566666666666555432 22233344444455555


Q ss_pred             EEcc
Q 035481           81 LNVS   84 (258)
Q Consensus        81 l~l~   84 (258)
                      +.+.
T Consensus       142 i~lp  145 (394)
T 4gt6_A          142 VTIP  145 (394)
T ss_dssp             EECC
T ss_pred             cccc
Confidence            5443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=5e-14  Score=100.22  Aligned_cols=106  Identities=19%  Similarity=0.187  Sum_probs=82.1

Q ss_pred             ccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEcc
Q 035481          101 GLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR  179 (258)
Q Consensus       101 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~  179 (258)
                      ..+.+++.++.++ .+|..+  .+.++.|++++|.+... +..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3567888888877 455444  36788888888888776 4456778888888888888887777777888888888888


Q ss_pred             CCcccCCCChhhccCCCccEEEeeCCeecc
Q 035481          180 DNKLFGRIPHQINELSNLHFLLLRGNYLQG  209 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  209 (258)
                      +|.+....+..+..+++|++|++++|.+..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            888876666678888888888888887763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=6.1e-14  Score=100.14  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             cEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCe
Q 035481          127 EFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNY  206 (258)
Q Consensus       127 ~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (258)
                      +.++++++.+..++..+.  +.++.|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            344444444444443332  455555555555555445555555555666666655554444444555566666666665


Q ss_pred             ecccCCccccCCCcccEEEccCceee
Q 035481          207 LQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       207 l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      +.+..+..+..+++|++|+|++|.+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            55443444555556666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=4.2e-14  Score=100.97  Aligned_cols=106  Identities=18%  Similarity=0.174  Sum_probs=91.2

Q ss_pred             CcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccC
Q 035481          149 VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH  228 (258)
Q Consensus       149 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~  228 (258)
                      -+.++++++.++..+ ..+  .+++++|++++|.+....+..+..+++|++|++++|++.+..+..|..+++|++|+|++
T Consensus        14 ~~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999887554 333  38999999999999888888999999999999999999977667788999999999999


Q ss_pred             ceeecCCCcccccccchhhhhhcccccCC
Q 035481          229 NRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       229 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      |.+++..+..|..+++|+.|++++|+++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99985444459999999999999999863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=1.3e-16  Score=116.67  Aligned_cols=132  Identities=21%  Similarity=0.227  Sum_probs=88.1

Q ss_pred             cccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCcc
Q 035481          119 QLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH  198 (258)
Q Consensus       119 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  198 (258)
                      .+..+++|+.|++++|.+..++ .+..+++|++|++++|.++. .+..+..+++|++|++++|.++. ++ .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence            5666777777777777776655 66667777777777777763 34455556777777777777753 33 566677777


Q ss_pred             EEEeeCCeecccCC-ccccCCCcccEEEccCceeecCCCc----------ccccccchhhhhhcccccC
Q 035481          199 FLLLRGNYLQGRIP-NQLCQLRKLGIMDLSHNRLNGPIPS----------CLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       199 ~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~----------~~~~l~~L~~l~l~~~~~~  256 (258)
                      +|++++|.+.+..+ ..+..+++|+++++++|.+.+..|.          .+..+++|+.|+  +++++
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            77777777764322 3566777777777777777654443          266677777654  66554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.42  E-value=1.5e-11  Score=99.31  Aligned_cols=108  Identities=6%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCccc
Q 035481          143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLG  222 (258)
Q Consensus       143 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  222 (258)
                      +..+..|+.+.+..+.. .....++.+++.|+.+.+.. .++.....+|.+|++|+.+.+..+ ++.....+|.+|.+|+
T Consensus       261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            33455555555544322 24455666667777776653 334455677888999999999765 4445667899999999


Q ss_pred             EEEccCceeecCCCcccccccchhhhhhcccc
Q 035481          223 IMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL  254 (258)
Q Consensus       223 ~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~  254 (258)
                      .+.+..+ ++.....+|.+|++|+.+.+.++.
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            9999654 553445779999999999887764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.40  E-value=2.6e-15  Score=119.98  Aligned_cols=165  Identities=16%  Similarity=0.119  Sum_probs=114.5

Q ss_pred             CCCccEEEccCccccCCCCC----cCC-CCCccceEEecCccccCCcCccc-cCCCCccEEEcccccceeec-----CCC
Q 035481           75 STLLEVLNVSNNKLSGDIPH----WIG-NFSGLWVLLMSENYLQGSIPVQL-GNLVCLEFIDISENSLSGSM-----VSL  143 (258)
Q Consensus        75 l~~L~~l~l~~~~~~~~~~~----~l~-~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-----~~~  143 (258)
                      ++.|+.+++++|.++.....    .+. ..++|+.|++.+|.+.......+ ..+++|+.|++++|.+.+..     ..+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46789999999887632222    222 23689999999998764333222 23567899999999886521     112


Q ss_pred             -CCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccC---
Q 035481          144 -SNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRI---  211 (258)
Q Consensus       144 -~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~---  211 (258)
                       ...+.|++|++++|.+++.    +...+...++|++|++++|.+...    ++..+...++|++|++++|.+++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2457899999999988653    334456788899999999988542    2445667789999999999887533   


Q ss_pred             -CccccCCCcccEEEccCceeecCCCccc
Q 035481          212 -PNQLCQLRKLGIMDLSHNRLNGPIPSCL  239 (258)
Q Consensus       212 -~~~l~~~~~L~~l~l~~~~~~~~~~~~~  239 (258)
                       ...+..+++|++|+|++|.+++.....+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence             3445567889999999998874333333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.36  E-value=1.3e-10  Score=93.21  Aligned_cols=240  Identities=11%  Similarity=0.056  Sum_probs=131.7

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      .+|+.+.+... ++ .++..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......++.. .+|+.+.
T Consensus        46 ~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~  119 (379)
T 4h09_A           46 DRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFE  119 (379)
T ss_dssp             GGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEE
T ss_pred             cCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccccc
Confidence            35677777543 66 788888999999999999754 666777778776 5666655433 33233344433 3566666


Q ss_pred             ccCcccc---------------------CCCCCcCCCCCccceEEecCcccc----------------------------
Q 035481           83 VSNNKLS---------------------GDIPHWIGNFSGLWVLLMSENYLQ----------------------------  113 (258)
Q Consensus        83 l~~~~~~---------------------~~~~~~l~~l~~L~~l~l~~~~~~----------------------------  113 (258)
                      +..+-..                     ......+..+..++.+.+......                            
T Consensus       120 lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (379)
T 4h09_A          120 FPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF  199 (379)
T ss_dssp             CCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred             CCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence            6442111                     011122233344444333221100                            


Q ss_pred             -------CCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCC
Q 035481          114 -------GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR  186 (258)
Q Consensus       114 -------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  186 (258)
                             ......+..+..++.+.+..+...-....+..+..|+.+.+..+ ++......+.++..++.+.+..+ +...
T Consensus       200 ~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i  277 (379)
T 4h09_A          200 TIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTV  277 (379)
T ss_dssp             ECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEE
T ss_pred             ccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceec
Confidence                   00011122233444444433211112233445666666666554 33445556666677777766544 3334


Q ss_pred             CChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhc
Q 035481          187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDD  251 (258)
Q Consensus       187 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~  251 (258)
                      ...+|.++++|+.+.+.++.+......+|.+|.+|+.+.|..+ ++.....+|.+|++|+.+.+.
T Consensus       278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            4556777777777777776666555667777777777777544 332334567777777777664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=1.1e-14  Score=116.27  Aligned_cols=181  Identities=15%  Similarity=0.122  Sum_probs=99.7

Q ss_pred             CCccEEECCCCccccccCccccC-----CcccceeecccccccccCCcccC-CCCCccEEEccCccccCCCCCcC-----
Q 035481           28 PSLETLDLSNNNFYGQLFPNYMN-----LTHLRSLLLDNNNFSGKMTDGLL-SSTLLEVLNVSNNKLSGDIPHWI-----   96 (258)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~l-----   96 (258)
                      +.|+.|++++|.++......+..     .+.|++|++++|.++......+. .+.+|+.|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45666666666655333222221     24666666666665432222221 23456667776666542211111     


Q ss_pred             CCCCccceEEecCccccCC----cCccccCCCCccEEEcccccceee-----cCCCCCcCCCcEEEeeccccccc----C
Q 035481           97 GNFSGLWVLLMSENYLQGS----IPVQLGNLVCLEFIDISENSLSGS-----MVSLSNLSSVEHIYLHNNAINGL----I  163 (258)
Q Consensus        97 ~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~----~  163 (258)
                      ...++|++|++.+|.+...    ++..+..+++|++|++++|.+.+.     ...+...++|++|++++|.+++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2356677777777776532    223345667788888888877542     23445566788888888887653    3


Q ss_pred             ccchhcCCCceEEEccCCcccCCCChhhccC---C--CccEEE--eeCCeec
Q 035481          164 PIALLRSSTLLTLDLRDNKLFGRIPHQINEL---S--NLHFLL--LRGNYLQ  208 (258)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~l~  208 (258)
                      ...+...++|++|++++|.++......+...   .  .++.+.  +.++.+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            3445566888899999888764433344332   1  156665  5555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=3e-12  Score=101.57  Aligned_cols=103  Identities=20%  Similarity=0.142  Sum_probs=81.2

Q ss_pred             EEEcccc-cceeecCCCCCcCCCcEEEeec-ccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481          128 FIDISEN-SLSGSMVSLSNLSSVEHIYLHN-NAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN  205 (258)
Q Consensus       128 ~L~l~~~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  205 (258)
                      .++++++ .+..++. +...++|+.|++++ |.+....+..+..+++|+.|+|++|.++...+.+|.++++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4566666 6777777 77778888888885 8888777777888888888888888887777778888888888888888


Q ss_pred             eecccCCccccCCCcccEEEccCceee
Q 035481          206 YLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       206 ~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++.+..+..+..++ |+.|+|++|.+.
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            88865555665554 888888888876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=3.1e-11  Score=95.72  Aligned_cols=103  Identities=23%  Similarity=0.192  Sum_probs=86.2

Q ss_pred             ceEEecCc-cccCCcCccccCCCCccEEEccc-ccceeec-CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEcc
Q 035481          103 WVLLMSEN-YLQGSIPVQLGNLVCLEFIDISE-NSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR  179 (258)
Q Consensus       103 ~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~  179 (258)
                      ..+++.++ .++ .+|. +..+++|+.|++++ |.+...+ ..+..+++|+.|++++|.+++..+..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45677776 777 5677 88889999999996 9998876 467889999999999999998888889999999999999


Q ss_pred             CCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          180 DNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      +|.+....+..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999866666666655 999999999876

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.20  E-value=1.7e-09  Score=86.74  Aligned_cols=222  Identities=9%  Similarity=-0.007  Sum_probs=142.6

Q ss_pred             cccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCcc
Q 035481           23 IFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGL  102 (258)
Q Consensus        23 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L  102 (258)
                      +|....+|+.+.+.. .++.+...+|.+|.+|+.+.+..+ ++.....+|..+ +|+.+.+..+ +.......+.. .+|
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            456667899999975 577788899999999999999754 555666777766 6877777543 33233334433 467


Q ss_pred             ceEEecCcccc---------------------CCcCccccCCCCccEEEccccccee-----------------------
Q 035481          103 WVLLMSENYLQ---------------------GSIPVQLGNLVCLEFIDISENSLSG-----------------------  138 (258)
Q Consensus       103 ~~l~l~~~~~~---------------------~~~~~~~~~~~~L~~L~l~~~~~~~-----------------------  138 (258)
                      +.+.+..+-..                     ......+..+..++.+.+.......                       
T Consensus       116 ~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
T 4h09_A          116 DDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT  195 (379)
T ss_dssp             SEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred             ccccCCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence            77777543111                     0111233344455544443221100                       


Q ss_pred             -------------ecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481          139 -------------SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN  205 (258)
Q Consensus       139 -------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  205 (258)
                                   ....+..+..++.+.+..+ +.......+.++..|+.+.+..+ ++.....++..+.+|+.+.+..+
T Consensus       196 ~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~  273 (379)
T 4h09_A          196 GTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK  273 (379)
T ss_dssp             CSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC
T ss_pred             ccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc
Confidence                         0011223445555555433 23344566777888888888766 44466678888899999998765


Q ss_pred             eecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcc
Q 035481          206 YLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDY  252 (258)
Q Consensus       206 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~  252 (258)
                       +......+|..|.+|+.+.+.++.++.....+|.+|++|+.+.+..
T Consensus       274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence             4445567889999999999998887744467899999999988854

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.16  E-value=1.3e-11  Score=97.94  Aligned_cols=63  Identities=21%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             CCCccEEEeeCCeecccCCcccc---CCCcccEEEccCceeecC----CCcccccccchhhhhhcccccC
Q 035481          194 LSNLHFLLLRGNYLQGRIPNQLC---QLRKLGIMDLSHNRLNGP----IPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       194 ~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +|+|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.|+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            45555555555554422211111   244555555555555431    2233344455555555555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.99  E-value=1.9e-10  Score=91.20  Aligned_cols=178  Identities=15%  Similarity=0.180  Sum_probs=95.0

Q ss_pred             cCCcccceeecccccccc---------cCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCcc
Q 035481           49 MNLTHLRSLLLDNNNFSG---------KMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ  119 (258)
Q Consensus        49 ~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~  119 (258)
                      ..+++|+.|.+.......         .....+..+++|+.|.+.++.-. ..+. + .+++|+.|.+..+.+.......
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            345677777665432110         11123445677888888665311 1222 2 2677888888766654332222


Q ss_pred             cc--CCCCccEEEcccc--c------ceeecCCC--CCcCCCcEEEeecccccccCccch---hcCCCceEEEccCCccc
Q 035481          120 LG--NLVCLEFIDISEN--S------LSGSMVSL--SNLSSVEHIYLHNNAINGLIPIAL---LRSSTLLTLDLRDNKLF  184 (258)
Q Consensus       120 ~~--~~~~L~~L~l~~~--~------~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~  184 (258)
                      +.  .+++|+.|+++.+  .      +..+...+  ..+++|++|++.+|.+.+.....+   ..+++|++|+++.|.+.
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            32  5677888777431  1      11111112  246778888887777654322222   23567778888777765


Q ss_pred             CCC----ChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCce
Q 035481          185 GRI----PHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR  230 (258)
Q Consensus       185 ~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~  230 (258)
                      ...    +..+..+++|+.|++++|.+++.....+...- ..++++++++
T Consensus       293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence            322    22234567777777777776654444444311 2356666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.83  E-value=2.9e-10  Score=79.97  Aligned_cols=86  Identities=9%  Similarity=0.005  Sum_probs=65.6

Q ss_pred             CcCCCcEEEeecccccccCccchhcCCCceEEEccCCc-ccCCCChhhcc----CCCccEEEeeCC-eecccCCccccCC
Q 035481          145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK-LFGRIPHQINE----LSNLHFLLLRGN-YLQGRIPNQLCQL  218 (258)
Q Consensus       145 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~-~l~~~~~~~l~~~  218 (258)
                      ....|++|++++|.+++.....+..+++|++|+|++|. +++.....+..    +++|++|++++| ++++.....+.++
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            34578999999998887766777888999999999986 44333334444    247899999998 5777666677788


Q ss_pred             CcccEEEccCce
Q 035481          219 RKLGIMDLSHNR  230 (258)
Q Consensus       219 ~~L~~l~l~~~~  230 (258)
                      ++|++|++++|.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            999999999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.79  E-value=2.3e-10  Score=82.29  Aligned_cols=115  Identities=16%  Similarity=0.132  Sum_probs=79.2

Q ss_pred             ccccCCCCccEEEcccc-ccee-----ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC-
Q 035481          118 VQLGNLVCLEFIDISEN-SLSG-----SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR-  186 (258)
Q Consensus       118 ~~~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-  186 (258)
                      ..+...+.|+.|++++| .+..     +...+...++|++|++++|.+.+.    +...+...++|++|++++|.+... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34566788888888888 7754     233445667888888888887643    334455667888888888887532 


Q ss_pred             ---CChhhccCCCccEEEe--eCCeecccC----CccccCCCcccEEEccCceee
Q 035481          187 ---IPHQINELSNLHFLLL--RGNYLQGRI----PNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       187 ---~~~~~~~~~~L~~L~l--~~~~l~~~~----~~~l~~~~~L~~l~l~~~~~~  232 (258)
                         +..++...+.|++|++  ++|.+.+..    ...+...+.|++|+|++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               3345566778888888  778776532    344555678888888888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.72  E-value=3.8e-09  Score=74.31  Aligned_cols=85  Identities=16%  Similarity=0.218  Sum_probs=55.3

Q ss_pred             CCccEEEccccccee-ecCCCCCcCCCcEEEeeccc-ccccCccchhcC----CCceEEEccCCc-ccCCCChhhccCCC
Q 035481          124 VCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNA-INGLIPIALLRS----STLLTLDLRDNK-LFGRIPHQINELSN  196 (258)
Q Consensus       124 ~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~  196 (258)
                      ..|+.||++++.+++ ....+..+++|++|++++|. +++..-..+...    ++|++|++++|. +++.....+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467788888777654 23445677788888888874 555444444442    467888888875 55444445667788


Q ss_pred             ccEEEeeCCe-ec
Q 035481          197 LHFLLLRGNY-LQ  208 (258)
Q Consensus       197 L~~L~l~~~~-l~  208 (258)
                      |+.|++++|. ++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            8888888873 44

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=1.9e-09  Score=77.53  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=50.2

Q ss_pred             CCCCccceEEecCc-cccCC----cCccccCCCCccEEEccccccee-----ecCCCCCcCCCcEEEeeccccccc----
Q 035481           97 GNFSGLWVLLMSEN-YLQGS----IPVQLGNLVCLEFIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGL----  162 (258)
Q Consensus        97 ~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----  162 (258)
                      ...+.|++|++.+| .+...    +...+...+.|+.|++++|.+.+     +...+...+.|++|++++|.+.+.    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            34455555555555 44321    12233344555555555555532     111222334555555555555432    


Q ss_pred             CccchhcCCCceEEEc--cCCcccCC----CChhhccCCCccEEEeeCCeec
Q 035481          163 IPIALLRSSTLLTLDL--RDNKLFGR----IPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      +...+...++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2333444455555555  44554321    1223333455555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=1.3e-08  Score=76.85  Aligned_cols=80  Identities=24%  Similarity=0.328  Sum_probs=57.4

Q ss_pred             hcCCCceEEEccCCcccC--CCChhhccCCCccEEEeeCCeecccCCccccCCC--cccEEEccCceeecCCCc------
Q 035481          168 LRSSTLLTLDLRDNKLFG--RIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLR--KLGIMDLSHNRLNGPIPS------  237 (258)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~--~L~~l~l~~~~~~~~~~~------  237 (258)
                      ..+++|+.|+|++|.++.  .++..+..+++|+.|+|++|++.+.  ..+..+.  +|++|+|++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            467889999999998875  3345667888999999999988754  2333333  889999999988765542      


Q ss_pred             -ccccccchhhhh
Q 035481          238 -CLGNVSSWREVI  249 (258)
Q Consensus       238 -~~~~l~~L~~l~  249 (258)
                       .+..+|+|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             356677776554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=4.5e-07  Score=68.49  Aligned_cols=81  Identities=26%  Similarity=0.259  Sum_probs=54.7

Q ss_pred             cCCCCccEEECCCCcccccc--CccccCCcccceeeccccccccc-CCcccCCCCCccEEEccCccccCCCC-------C
Q 035481           25 SGCPSLETLDLSNNNFYGQL--FPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEVLNVSNNKLSGDIP-------H   94 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~-------~   94 (258)
                      .++++|+.|+|++|.+..+.  +..+..+++|+.|++++|.+... ....+..+ +|++|++.+|.+....+       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            45788888888888887532  23445788888888888888643 11223333 78888888888764333       1


Q ss_pred             cCCCCCccceEE
Q 035481           95 WIGNFSGLWVLL  106 (258)
Q Consensus        95 ~l~~l~~L~~l~  106 (258)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            345678888775

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=5.6e-06  Score=59.33  Aligned_cols=112  Identities=15%  Similarity=0.098  Sum_probs=72.4

Q ss_pred             ccCCCCccEEEcccc-ccee-----ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC---
Q 035481          120 LGNLVCLEFIDISEN-SLSG-----SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR---  186 (258)
Q Consensus       120 ~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~---  186 (258)
                      +..-+.|+.|+++.+ .+.+     +...+..-+.|+.|++++|.+.+.    +...+..-+.|++|+|+.|.+...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344567888888875 6643     233445667888888888887654    334455567888888888887532   


Q ss_pred             -CChhhccCCCccEEEeeCCe---ecc----cCCccccCCCcccEEEccCcee
Q 035481          187 -IPHQINELSNLHFLLLRGNY---LQG----RIPNQLCQLRKLGIMDLSHNRL  231 (258)
Q Consensus       187 -~~~~~~~~~~L~~L~l~~~~---l~~----~~~~~l~~~~~L~~l~l~~~~~  231 (258)
                       +..++...+.|++|++++|.   +.+    .+...+..-+.|.+|+++.+.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             23345556778888887652   332    2334555567788888877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.42  E-value=2.4e-05  Score=56.01  Aligned_cols=110  Identities=10%  Similarity=0.066  Sum_probs=57.5

Q ss_pred             CCCCccceEEecCc-cccCC----cCccccCCCCccEEEcccccceee-----cCCCCCcCCCcEEEeeccccccc----
Q 035481           97 GNFSGLWVLLMSEN-YLQGS----IPVQLGNLVCLEFIDISENSLSGS-----MVSLSNLSSVEHIYLHNNAINGL----  162 (258)
Q Consensus        97 ~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~----  162 (258)
                      .+-+.|+.|++.++ .+...    +.+.+..-+.|+.|+++.|.+.+.     ...+..-+.|++|++++|.+.+.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34456667777654 44311    223344456677777777766541     12223445677777777766543    


Q ss_pred             CccchhcCCCceEEEccCCcc---cC----CCChhhccCCCccEEEeeCCe
Q 035481          163 IPIALLRSSTLLTLDLRDNKL---FG----RIPHQINELSNLHFLLLRGNY  206 (258)
Q Consensus       163 ~~~~~~~~~~L~~L~l~~~~~---~~----~~~~~~~~~~~L~~L~l~~~~  206 (258)
                      +.+.+..-+.|++|+|+++..   ..    .+..++...+.|+.|+++.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            233444445677777765422   11    122344455666777666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.11  E-value=0.00036  Score=46.58  Aligned_cols=57  Identities=25%  Similarity=0.253  Sum_probs=43.8

Q ss_pred             eEEEccCCccc-CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          174 LTLDLRDNKLF-GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       174 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ..++.++..++ ..+|..+  .++++.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777888775 2444322  247999999999998777778888999999999999886

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.01  E-value=0.0015  Score=43.52  Aligned_cols=55  Identities=22%  Similarity=0.205  Sum_probs=30.5

Q ss_pred             EEecCcCccc-cccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccc
Q 035481            7 TLDLSRNNFS-GELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF   64 (258)
Q Consensus         7 ~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   64 (258)
                      .++.++++++ ..+|..+   .++++.|+|++|.++.+....|..+++|++|+|.+|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            3455555553 1344332   23466666666666655555566666666666666544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=94.58  E-value=0.12  Score=32.42  Aligned_cols=50  Identities=14%  Similarity=0.236  Sum_probs=38.2

Q ss_pred             cCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccc
Q 035481           12 RNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN   63 (258)
Q Consensus        12 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~   63 (258)
                      +..++ .+...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+....
T Consensus         5 g~~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence            34566 677888888888888888764 555777888888888888887643

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=87.93  E-value=0.67  Score=28.94  Aligned_cols=47  Identities=13%  Similarity=0.125  Sum_probs=29.7

Q ss_pred             cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481          158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN  205 (258)
Q Consensus       158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  205 (258)
                      .++.+...+|.+|.+|+.+.+..+- +.....+|.+|.+|+.+.+.+.
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence            3444555667777777777766653 3455566777777777776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 4e-15
 Identities = 57/236 (24%), Positives = 86/236 (36%), Gaps = 2/236 (0%)

Query: 5   LITLDLSRNNFSGELSRP-IFSGCPSLETLDLSNN-NFYGQLFPNYMNLTHLRSLLLDNN 62
           +  LDLS  N       P   +  P L  L +    N  G + P    LT L  L + + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
           N SG + D L     L  L+ S N LSG +P  I +   L  +    N + G+IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182
              L        +     +  +  +        +  +       L  S            
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSC 238
                  ++    NL+ L LR N + G +P  L QL+ L  +++S N L G IP  
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 2/148 (1%)

Query: 10  LSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMT 69
              N  SG +     S      ++ +S N   G++ P + NL         + N      
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--LSRNMLEGDA 213

Query: 70  DGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFI 129
             L  S                    +G    L  L +  N + G++P  L  L  L  +
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 130 DISENSLSGSMVSLSNLSSVEHIYLHNN 157
           ++S N+L G +    NL   +     NN
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 1/204 (0%)

Query: 13  NNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGL 72
           +           S   +L TLD S N   G L P+  +L +L  +  D N  SG + D  
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 73  LSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDIS 132
            S + L      +                L  + +S N L+G   V  G+    + I ++
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 133 ENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 192
           +NSL+  +  +    ++  + L NN I G +P  L +   L +L++  N L G IP Q  
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 193 ELSNLHFLLLRGNYLQGRIPNQLC 216
            L          N      P   C
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNF 40
           +K L +L++S NN  GE+  P        +    +NN  
Sbjct: 267 LKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANNKC 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 6e-14
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 5/231 (2%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
            +   LDL  N  +  +    F    +L TL L NN         +  L  L  L L  N
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 63  NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
                      +   L V      K+   + + +     +  L  +     G        
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQG 148

Query: 123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182
           +  L +I I++ ++  + +      S+  ++L  N I  +   +L   + L  L L  N 
Sbjct: 149 MKKLSYIRIADTNI--TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233
           +       +    +L  L L  N L  ++P  L   + + ++ L +N ++ 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 2e-13
 Identities = 44/216 (20%), Positives = 74/216 (34%), Gaps = 3/216 (1%)

Query: 28  PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK 87
           P    LDL NN        ++ NL +L +L+L NN  S            LE L +S N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 88  LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLS 147
           L             L V       ++ S+   L  ++ +E       S      +   + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYL 207
            + +I + +  I  +         +L  L L  NK+       +  L+NL  L L  N +
Sbjct: 151 KLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 208 QGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS 243
                  L     L  + L++N+L         +  
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 4e-10
 Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 75  STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN 134
                +L++ NNK++        N   L  L++  N +    P     LV LE + +S+N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 135 SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIAL--LRSSTLLTLDLRDNKLFGRIPHQIN 192
            L    +      +++ + +H N I  +       L    ++ L     K  G       
Sbjct: 90  QLKE--LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 193 ELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWRE 247
            +  L ++ +    +          L +L    L  N++     + L  +++  +
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAK 199

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 4e-08
 Identities = 34/179 (18%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 13  NNFSGELSRPIFSGCPSLETLDLSNNNFY--GQLFPNYMNLTHLRSLLLDNNNFSGKMTD 70
            N   ++ + +F+G   +  ++L  N     G     +  +  L  + + + N +  +  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 167

Query: 71  GLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFID 130
           GL  S  L  L++  NK++      +   + L  L +S N +       L N   L  + 
Sbjct: 168 GLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 131 ISENSLSGSMVSLSNLSSVEHIYLHNNAINGL------IPIALLRSSTLLTLDLRDNKL 183
           ++ N L      L++   ++ +YLHNN I+ +       P    + ++   + L  N +
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 24  FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83
           F G   L  + +++ N              L  L LD N  +      L     L  L +
Sbjct: 146 FQGMKKLSYIRIADTNI---TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 84  SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG----- 138
           S N +S      + N   L  L ++ N L   +P  L +   ++ + +  N++S      
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 139 --SMVSLSNLSSVEHIYLHNNAIN 160
                  +  +S   + L +N + 
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQ 285

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 2e-11
 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 32/195 (16%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSG 66
           +L  + N  S      I     +L+ L L+ N           +LT+L  L L NN  S 
Sbjct: 201 SLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 67  KMTDGLLSSTLLEVLNVSNNKLSGDIP--------------------HWIGNFSGLWVLL 106
                 L+   L  L +  N++S   P                      I N   L  L 
Sbjct: 256 LAPLSGLTK--LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 107 MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIA 166
           +  N +    P  + +L  L+ +  + N +S  + SL+NL+++  +   +N I+ L P+A
Sbjct: 314 LYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTPLA 370

Query: 167 LLRSSTLLTLDLRDN 181
            L    +  L L D 
Sbjct: 371 NLTR--ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 2e-11
 Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +  L  LDL+ N  S        SG   L  L L  N            LT L +L L+ 
Sbjct: 240 LTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 294

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N          L +  L  L +  N +S   P  + + + L  L  + N +       L 
Sbjct: 295 NQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNA 158
           NL  + ++    N +S     L+NL+ +  + L++ A
Sbjct: 349 NLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 13/192 (6%)

Query: 45  FPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV 104
                 LT+L SL+  NN  S     G+L++  L+ L+++ N+L       + + + L  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIP 164
           L ++ N +    P  L  L  L  + +  N +S  +  L+ L+++ ++ L+ N +  + P
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISP 302

Query: 165 IALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM 224
           I+ L+   L  L L  N +    P  ++ L+ L  L    N +     + L  L  +  +
Sbjct: 303 ISNLK--NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 225 DLSHNRLNGPIP 236
              HN+++   P
Sbjct: 357 SAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 27/253 (10%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           ++ ++ TL   R       S        +L  ++ SNN           NLT L  +L++
Sbjct: 42  DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMN 96

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIP---------------HWIGNFSGLWVL 105
           NN  +       L++     L  +       +                  I   SGL  L
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 106 LMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPI 165
                  Q +    L NL  LE +DIS N     +  L+ L+++E +   NN I+ + P+
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPL 215

Query: 166 ALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD 225
            +L +  L  L L  N+L       +  L+NL  L L  N +    P  L  L KL  + 
Sbjct: 216 GILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 269

Query: 226 LSHNRLNGPIPSC 238
           L  N+++   P  
Sbjct: 270 LGANQISNISPLA 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-10
 Identities = 49/243 (20%), Positives = 78/243 (32%), Gaps = 4/243 (1%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
                + L  N  S  +    F  C +L  L L +N         +  L  L  L L +N
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 63  NFSGKMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
                +          L  L++    L    P      + L  L + +N LQ        
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 122 NLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180
           +L  L  + +  N +S     +   L S++ + LH N +  + P A      L+TL L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
           N L       +  L  L +L L  N        +      L     S + +   +P  L 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 241 NVS 243
              
Sbjct: 270 GRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 2/199 (1%)

Query: 52  THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENY 111
              + + L  N  S        +   L +L + +N L+          + L  L +S+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 112 LQGSI-PVQLGNLVCLEFIDISENSLSGSMVSLSNL-SSVEHIYLHNNAINGLIPIALLR 169
              S+ P     L  L  + +    L      L    ++++++YL +NA+  L       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 170 SSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229
              L  L L  N++          L +L  LLL  N +    P+    L +L  + L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 230 RLNGPIPSCLGNVSSWREV 248
            L+      L  + + + +
Sbjct: 212 NLSALPTEALAPLRALQYL 230

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-07
 Identities = 45/205 (21%), Positives = 64/205 (31%), Gaps = 9/205 (4%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
            + ++  + N +  L   +         L LS N  Y       M  T L  L LD    
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
           +    DG L           ++     +P        L VL +S N L       L  L 
Sbjct: 68  TKLQVDGTLPVL---GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 125 CLEFIDISENSLSGSMVSLSNLSSVEHIYLHN-NAINGLIPIALLRSSTLLTLDLRDNKL 183
            L+ + +  N L      L   +          N +  L    L     L TL L++N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 184 FGRIPHQINELSNLHFLLLRGNYLQ 208
           +  IP        L F  L GN   
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 8e-07
 Identities = 30/176 (17%), Positives = 47/176 (26%), Gaps = 22/176 (12%)

Query: 3   KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
           K+   L LS N      S         L  L+L             + +     L  +  
Sbjct: 31  KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 63  N---------------------FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG 101
                                  +      L     L+ L +  N+L    P  +     
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 102 LWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNN 157
           L  L ++ N L       L  L  L+ + + ENSL            +   +LH N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 3/174 (1%)

Query: 75  STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN 134
                +L++S N L       +  ++ L  L +    L          L  L  +D+S N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHN 87

Query: 135 SLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINEL 194
            L    +    L ++  + +  N +  L   AL     L  L L+ N+L    P  +   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 195 SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREV 248
             L  L L  N L       L  L  L  + L  N L   IP            
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-05
 Identities = 10/96 (10%), Positives = 22/96 (22%), Gaps = 4/96 (4%)

Query: 4  ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNF----YGQLFPNYMNLTHLRSLLL 59
          ++ +LD+     S      +       + + L +          +         L  L L
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 60 DNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHW 95
           +N         +L         +    L       
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 24  FSGCPSLETLDLSNNNFYGQ----LFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSS---- 75
                 L  L L++ +        L    +    LR L L NN         L+ S    
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 76  -TLLEVLNVSNNKLSGDIPHWI 96
             LLE L + +   S ++   +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 3e-04
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 8/79 (10%)

Query: 2   MKELITLDLSRNNFSGELSRPI---FSGCPSLETLDLSNNNFYGQLFPN-----YMNLTH 53
              L  L L+  + S      +        SL  LDLSNN                    
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 54  LRSLLLDNNNFSGKMTDGL 72
           L  L+L +  +S +M D L
Sbjct: 428 LEQLVLYDIYWSEEMEDRL 446

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 38/227 (16%), Positives = 67/227 (29%), Gaps = 18/227 (7%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
           +   I +   ++N +  ++    +    + TL                 L +L  L L +
Sbjct: 18  LANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLG 121
           N  +       L+      L+ +  K    I       +         +    +    L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 122 NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN 181
            L        + + L+G              YL            L   S L TL   DN
Sbjct: 133 VLYLDLNQITNISPLAGLT---------NLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 182 KLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH 228
           K+    P  +  L NL  + L+ N +    P  L     L I+ L++
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 20/194 (10%)

Query: 1   EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
           ++  + TL       +   +        +L  L+L +N          +       L  +
Sbjct: 39  DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN 95

Query: 61  NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL-------- 112
                  +       TL        +         +         + + + L        
Sbjct: 96  PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY 155

Query: 113 ------QGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIA 166
                 Q S    L NL  L  +   +N +S  +  L++L ++  ++L NN I+ + P+A
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVSPLA 214

Query: 167 LLRSSTLLTLDLRD 180
              +  L  + L +
Sbjct: 215 NTSN--LFIVTLTN 226

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 31/242 (12%), Positives = 62/242 (25%), Gaps = 15/242 (6%)

Query: 5   LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
           +  +DLS +         I S C  L+ L L        +       ++L  L L   + 
Sbjct: 48  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

Query: 65  SGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV 124
             +     L S+   +  ++ +         +          +++  L G       + +
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167

Query: 125 CLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD-NKL 183
                                   V      +  +         + + L  L L     +
Sbjct: 168 STLVRRCPNL--------------VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 213

Query: 184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS 243
                 ++ E+  L  L + G    G +      L  L I       +  P      N  
Sbjct: 214 IPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQE 273

Query: 244 SW 245
            W
Sbjct: 274 IW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSG 66
           TLDL+  N   +++  + S    +       +     L  +  +   ++ + L N+    
Sbjct: 4   TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEV 60

Query: 67  KMTDGLLSS-TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVC 125
               G+LS  + L+ L++   +LS  I + +   S L  L +S         +Q     C
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 28/190 (14%), Positives = 68/190 (35%), Gaps = 20/190 (10%)

Query: 2   MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
             E I  +L + + +  +++   +   S++ +  +N++           L ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 62  NNFSGKMTDGLLSSTLLEVLNVSNNKLS---------------GDIPHWIGNFSGLWVLL 106
           N  +       L +     L+ +  K                  +    I     L  L 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 107 MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIA 166
                      + + + +        E++    +V L+ L+ ++++YL  N I+ L  +A
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 197

Query: 167 LLRSSTLLTL 176
            L++  +L L
Sbjct: 198 GLKNLDVLEL 207

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 5e-04
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 8/178 (4%)

Query: 7   TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLDNNNFS 65
           T+D +      E+ R I         L L++N             L HL  L L  N  +
Sbjct: 12  TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 66  GKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVC 125
           G   +    ++ ++ L +  NK+             L  L + +N +   +P    +L  
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 126 LEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL 183
           L  ++++ N  + +         +    L+  A     P  +     +   DL  ++ 
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEF 182

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 12  RNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDG 71
             N S    R +    PSLE L++SNN       P       L  L+   N+ +      
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKL--IELPA--LPPRLERLIASFNHLAE--VPE 321

Query: 72  LLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV 104
           L  +  L+ L+V  N L    P    +   L +
Sbjct: 322 LPQN--LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 151 HIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGR 210
               + NA +  I        +L  L++ +NKL   +P        L  L+   N+L   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELP---ALPPRLERLIASFNHLA-E 318

Query: 211 IPNQLCQLRKLGIMDLSHNRLNG--PIPSCLGN 241
           +P     L++L    + +N L     IP  + +
Sbjct: 319 VPELPQNLKQL---HVEYNPLREFPDIPESVED 348

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.47

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=5.7e-30  Score=199.20  Aligned_cols=251  Identities=28%  Similarity=0.370  Sum_probs=217.0

Q ss_pred             cceEEecCcCccccc--cCcccccCCCCccEEECCC-CccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481            4 ELITLDLSRNNFSGE--LSRPIFSGCPSLETLDLSN-NNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      +++.|+++++++.+.  +|.. +.++++|++|++++ |.+.+..|..|.++++|++|++++|++....+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            689999999988763  4554 57899999999997 6787777889999999999999999998777777888999999


Q ss_pred             EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCc-cEEEcccccceeecCCCCCcCCCcEEEeecccc
Q 035481           81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCL-EFIDISENSLSGSMVSLSNLSSVEHIYLHNNAI  159 (258)
Q Consensus        81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~  159 (258)
                      +++..|.+....|..+..++.++.+++.+|.+.+..|..+..+..+ +.++++.|.+...............+++..+..
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999888888999999999999999999988888888887776 889999999887544433334456788888888


Q ss_pred             cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccc
Q 035481          160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL  239 (258)
Q Consensus       160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~  239 (258)
                      .+..+..+...++++.++++++.+... +..+..+++++.|++++|++++.+|..+.++++|++|+|++|+++|.+|+ +
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            877888888899999999999998754 44678889999999999999999999999999999999999999988886 6


Q ss_pred             ccccchhhhhhcccc-cCC
Q 035481          240 GNVSSWREVIDDYSL-LSG  257 (258)
Q Consensus       240 ~~l~~L~~l~l~~~~-~~~  257 (258)
                      +.+++|+.+.+.+|+ +.|
T Consensus       288 ~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEES
T ss_pred             ccCCCCCHHHhCCCccccC
Confidence            889999999999997 444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=9.4e-27  Score=180.23  Aligned_cols=245  Identities=20%  Similarity=0.229  Sum_probs=157.6

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      ++++|++++|+++ .++...|.++++|++|++++|.+....+..|.+++.|++|++++|+++.. +..  ....++.++.
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~~--~~~~l~~L~~  107 (305)
T d1xkua_          32 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEK--MPKTLQELRV  107 (305)
T ss_dssp             TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSS--CCTTCCEEEC
T ss_pred             CCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC-ccc--hhhhhhhhhc
Confidence            3444555555544 44444444445555555555544444444444445555555555444422 111  1233444444


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccc--cCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYL--QGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      ..+.+....+..+.....++.+....+..  .......+..+++|+.+++..|.+...+...  +++++++++.+|..+.
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK  185 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCE
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCC
Confidence            44444322222233344444555444332  1222345666788889999888877655433  5789999999998887


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCC-c---
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP-S---  237 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~-~---  237 (258)
                      ..+..+..++.++.|++++|.+....+..+.++++|++|++++|++. .+|..+..+++|++|+|++|+++ .++ .   
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~  263 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFC  263 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSS
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhcc
Confidence            77888888999999999999998777888889999999999999887 56778889999999999999987 343 2   


Q ss_pred             ---ccccccchhhhhhcccccC
Q 035481          238 ---CLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       238 ---~~~~l~~L~~l~l~~~~~~  256 (258)
                         .....++|+.|++++|++.
T Consensus       264 ~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         264 PPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSC
T ss_pred             CcchhcccCCCCEEECCCCcCc
Confidence               2345778899999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.3e-26  Score=177.14  Aligned_cols=243  Identities=21%  Similarity=0.228  Sum_probs=205.4

Q ss_pred             ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481            5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~   84 (258)
                      .++++-++.+++ ++|.++   .+++++|++++|+++.+.+.+|.++++|++|+++++.+....+.++..+++|+++++.
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            567888888898 899876   3689999999999987777789999999999999999987778889999999999999


Q ss_pred             CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee---ecCCCCCcCCCcEEEeecccccc
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      +|.+. .++..  ....++.+....+.+....+..+.....+..++...+....   ....+..++.++.+++.+|.+..
T Consensus        88 ~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          88 KNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             SSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            99987 44443  34678899999888876655566777788888887775533   23445677899999999998875


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccccc
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN  241 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~  241 (258)
                      ....   ..++++.|++++|......+..+.+++.+++|++++|.+.+..+..+.++++|++|+|++|.++ .+|+++..
T Consensus       165 l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         165 IPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             CCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            4332   3579999999999998888889999999999999999999888889999999999999999998 68989999


Q ss_pred             ccchhhhhhcccccCCC
Q 035481          242 VSSWREVIDDYSLLSGF  258 (258)
Q Consensus       242 l~~L~~l~l~~~~~~~~  258 (258)
                      +++|+.|++++|+|+.+
T Consensus       241 l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             CSSCCEEECCSSCCCCC
T ss_pred             ccCCCEEECCCCccCcc
Confidence            99999999999999763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.3e-26  Score=173.76  Aligned_cols=222  Identities=23%  Similarity=0.265  Sum_probs=184.5

Q ss_pred             EEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc-C
Q 035481            7 TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS-N   85 (258)
Q Consensus         7 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~-~   85 (258)
                      .++.++.+++ ++|..+.   +.+++|++++|+++.+.+.+|.+++.|++|+++++.+.......+..+..++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4577788888 7887653   568899999999987777788999999999999998887777777777888887764 4


Q ss_pred             ccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccccCc
Q 035481           86 NKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIP  164 (258)
Q Consensus        86 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~  164 (258)
                      +.+....+..+.++++|+.+++.++.+....+..+..+.+|+.+++..|.+..++ ..+...+.+++|++++|.+....+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            4555555777888999999999998887666667777888999999999888765 346678889999999999888888


Q ss_pred             cchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          165 IALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       165 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ..+.++++|+.+++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            88888999999999999988788888999999999999999998777788888999999999998876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=1.3e-26  Score=180.00  Aligned_cols=228  Identities=25%  Similarity=0.334  Sum_probs=199.4

Q ss_pred             CCccEEECCCCcccc--ccCccccCCcccceeeccc-ccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481           28 PSLETLDLSNNNFYG--QLFPNYMNLTHLRSLLLDN-NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV  104 (258)
Q Consensus        28 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  104 (258)
                      .+++.|+++++.+.+  ..++.+.++++|++|++++ |.+++..|..+..+++|++|++++|.+....+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            368999999998875  3567899999999999986 6787778889999999999999999998777788889999999


Q ss_pred             EEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCC-cEEEeecccccccCccchhcCCCceEEEccCCc
Q 035481          105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSV-EHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK  182 (258)
Q Consensus       105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L-~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  182 (258)
                      +++..|...+..|..+..++.++.+++++|.+.. .+..+.....+ +.+.+.+|.+++..+..+..+... .++++++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999999888889999999999999999999875 55566666554 889999999988877777766554 69999998


Q ss_pred             ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481          183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG  257 (258)
Q Consensus       183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  257 (258)
                      .....+..+..+++++.+++++|.+.+.+ ..+..+++|+.|++++|++++.+|+.+.++++|+.|++++|.|+|
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            88788888889999999999999998654 467888999999999999999999999999999999999999985

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-25  Score=171.32  Aligned_cols=249  Identities=20%  Similarity=0.175  Sum_probs=203.9

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecc-cccccccCCcccCCCCCccEEE
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD-NNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      .+++|++++|+++ .++...|.++++|++++++++.+..+....+.....++.+... .+.+....+..+..+++|++++
T Consensus        33 ~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            5799999999998 8999899999999999999999988888888888888888765 4566666677888999999999


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~  161 (258)
                      ++.+.+....+..+..+.+|+.+++.+|.+++..+..+..+++|+.|++++|.+...+ ..+..+++|+.+++.+|.++.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            9999987666677888899999999999998776778888999999999999998764 456789999999999999998


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccccc
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN  241 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~  241 (258)
                      ..+..+..++++++|++++|.+....+.++..+++|++|++++|.+...-+ ...-...++.+....+.+....|..+.+
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCchHHcC
Confidence            888999999999999999999988888899999999999999998874211 1101123455555566666566665543


Q ss_pred             ccchhhhhhcccccCC
Q 035481          242 VSSWREVIDDYSLLSG  257 (258)
Q Consensus       242 l~~L~~l~l~~~~~~~  257 (258)
                         ....+++.+.++|
T Consensus       271 ---~~l~~l~~~~l~g  283 (284)
T d1ozna_         271 ---RDLKRLAANDLQG  283 (284)
T ss_dssp             ---CBGGGSCGGGSCC
T ss_pred             ---CccccCCHHHCCC
Confidence               3444566666655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.6e-24  Score=161.67  Aligned_cols=202  Identities=27%  Similarity=0.274  Sum_probs=163.1

Q ss_pred             ccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccc
Q 035481           24 FSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLW  103 (258)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~  103 (258)
                      +++...+.+++-+++.++.+ |..+.  +.+++|++++|.++...+.++..+++|++|++++|.++. ++ .+..+++|+
T Consensus         6 ~~~~~~~~~v~C~~~~L~~i-P~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             EcccCCCeEEEccCCCCCee-CcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            45566777788888888743 44443  478999999999986666778899999999999998873 32 346789999


Q ss_pred             eEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCc
Q 035481          104 VLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK  182 (258)
Q Consensus       104 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  182 (258)
                      .|++.+|.+. ..+..+..+++|+.++++++.+.... ..+....+++++++.+|.+....+..+..+++++.+++++|.
T Consensus        81 ~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            9999999887 44667788899999999988887644 345577888999999998887777777888899999999999


Q ss_pred             ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481          183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      ++...+..+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            88777778888899999999999887 67777778888999999998876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=2.7e-23  Score=165.49  Aligned_cols=79  Identities=25%  Similarity=0.316  Sum_probs=47.7

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL   81 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l   81 (258)
                      +.+|++|++++++++ .+. + +..+++|++|++++|+++...  .+.++++|++|++++|.+....  .+..+++|+.+
T Consensus        43 l~~l~~L~l~~~~I~-~l~-g-l~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIK-SID-G-VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCC-Ccc-c-cccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccc
Confidence            345677777777666 442 1 345677777777777665432  3666777777777777665322  25566666666


Q ss_pred             EccCcc
Q 035481           82 NVSNNK   87 (258)
Q Consensus        82 ~l~~~~   87 (258)
                      ++.++.
T Consensus       116 ~~~~~~  121 (384)
T d2omza2         116 TLFNNQ  121 (384)
T ss_dssp             ECCSSC
T ss_pred             cccccc
Confidence            665443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.9e-23  Score=155.50  Aligned_cols=198  Identities=25%  Similarity=0.248  Sum_probs=171.8

Q ss_pred             CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481            3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN   82 (258)
Q Consensus         3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~   82 (258)
                      ..+..++.++++++ .+|.++   .+++++|++++|.+..+.+.+|.++++|++|++++|+++..  ..++.+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--ccccccccccccc
Confidence            34566799999999 788765   36899999999999888778899999999999999998743  2356789999999


Q ss_pred             ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccc
Q 035481           83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAING  161 (258)
Q Consensus        83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~  161 (258)
                      +++|.+. ..+..+..+++|+.+++.++.+....+..+..+.+++.+++..|.+...+.. +...+.++.+++++|.++.
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            9999988 5567788999999999999998877777788899999999999999876644 4578999999999999998


Q ss_pred             cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            88888999999999999999997 77778888999999999998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=5.2e-22  Score=157.95  Aligned_cols=237  Identities=24%  Similarity=0.322  Sum_probs=156.1

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccC-------------
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKM-------------   68 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------   68 (258)
                      +++|++|++++|+++ .++.  ++++++|++|++++|++...  ..+..+++|+.++++++.++...             
T Consensus        65 L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~  139 (384)
T d2omza2          65 LNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL  139 (384)
T ss_dssp             CTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEE
T ss_pred             CCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            689999999999998 5654  78899999999999998754  34778888988888766543210             


Q ss_pred             --------------------------------------------------CcccCCCCCccEEEccCccccCCCCCcCCC
Q 035481           69 --------------------------------------------------TDGLLSSTLLEVLNVSNNKLSGDIPHWIGN   98 (258)
Q Consensus        69 --------------------------------------------------~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~   98 (258)
                                                                        ......+++++.+++.++.+....+  ...
T Consensus       140 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~  217 (384)
T d2omza2         140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGI  217 (384)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred             ccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccc
Confidence                                                              0112334567777777766653322  234


Q ss_pred             CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccC---------------
Q 035481           99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLI---------------  163 (258)
Q Consensus        99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---------------  163 (258)
                      +++|+++++.++.++. . ..+..+++|+.+++++|.+.+.. .+..+++|++++++++.++...               
T Consensus       218 ~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         218 LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             cCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC-cccccccCCEeeccCcccCCCCccccccccccccccc
Confidence            5666777776666652 2 24455666666666666655433 2444555666666555443221               


Q ss_pred             -----ccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcc
Q 035481          164 -----PIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSC  238 (258)
Q Consensus       164 -----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~  238 (258)
                           ...+..+++++.+++++|.+.+. + .+..+++|++|++++|++++ + ..+.++++|++|++++|++++..|  
T Consensus       295 n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l~~--  368 (384)
T d2omza2         295 NQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQISDLTP--  368 (384)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCCCBCGG--
T ss_pred             cccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcCCCChh--
Confidence                 12355667777788887777543 2 36777888888888887764 2 357778888888888888874332  


Q ss_pred             cccccchhhhhhcccc
Q 035481          239 LGNVSSWREVIDDYSL  254 (258)
Q Consensus       239 ~~~l~~L~~l~l~~~~  254 (258)
                      +.++++|+.|++++|+
T Consensus       369 l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         369 LANLTRITQLGLNDQA  384 (384)
T ss_dssp             GTTCTTCSEEECCCEE
T ss_pred             hccCCCCCEeeCCCCc
Confidence            7788888888888774

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.8e-19  Score=133.27  Aligned_cols=215  Identities=14%  Similarity=0.067  Sum_probs=125.0

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCccEEEcc
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~   84 (258)
                      ++++.++.+++ ++|..++   +++++|++++|.+..+...+|.++++|++|++++|.+... .+.++..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            46777777787 7887663   4788999999988877777788899999999998877543 34456777888888765


Q ss_pred             C-ccccCCCCCcCCCCCccceEEecCccccCCcCc-cccCCCCccEEEcccccceeecC-CCCCc-CCCcEEEeeccccc
Q 035481           85 N-NKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV-QLGNLVCLEFIDISENSLSGSMV-SLSNL-SSVEHIYLHNNAIN  160 (258)
Q Consensus        85 ~-~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~-~~L~~l~l~~~~~~  160 (258)
                      . +.+....+..+..+++|+.+++.++.+....+. .+..+..+..+....+.+..+.. .+..+ ..++.+++.+|.++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence            3 455555566677788888888888776532221 11222333333434444444322 22222 34555666666555


Q ss_pred             ccCccchhcCCCce-EEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481          161 GLIPIALLRSSTLL-TLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD  225 (258)
Q Consensus       161 ~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~  225 (258)
                      ......+. .+++. .+++.+|.+++..+..+.++++|++|++++|++++..+..|.+++.|+.++
T Consensus       167 ~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         167 EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            44333332 23332 233444555433334455555555555555555533333444444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.1e-19  Score=132.60  Aligned_cols=189  Identities=20%  Similarity=0.252  Sum_probs=118.5

Q ss_pred             cCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccE
Q 035481           49 MNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEF  128 (258)
Q Consensus        49 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  128 (258)
                      ..+.+|+.|++.++.++..  ..+..+++|+++++++|.+....  .+..+++++.+.+.++.++ .+ ..+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NV-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-cc-ccccccccccc
Confidence            3455566666666655532  23555666666666666554221  2555666666666666554 22 23556666777


Q ss_pred             EEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          129 IDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       129 L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      ++++.+...... .+...+.+..+.+.++.+...  ..+..+++++.|++++|.+...  ..+.++++|+.|++++|++.
T Consensus       112 l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         112 LDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             EECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccc-hhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccC
Confidence            766666554332 234456667777776665532  3356677888888888876432  34677888888888888776


Q ss_pred             ccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcc
Q 035481          209 GRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDY  252 (258)
Q Consensus       209 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~  252 (258)
                      +.  ..+.++++|++|++++|++++ ++ .+..+++|+.|++++
T Consensus       187 ~l--~~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 DI--SPLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CC--GGGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             CC--hhhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            43  246778888888888888873 44 377888888887763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.1e-18  Score=128.70  Aligned_cols=203  Identities=21%  Similarity=0.268  Sum_probs=155.8

Q ss_pred             EecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCcc
Q 035481            8 LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK   87 (258)
Q Consensus         8 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~   87 (258)
                      ++++.+++++.+.   .+.+.+|+.|++.+|.+...  ..+..+++|++|++++|.+....  .+..+++++++++.++.
T Consensus        24 ~~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcCC---HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            4556666664332   34567899999999988754  45788999999999999887433  37788999999999887


Q ss_pred             ccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccch
Q 035481           88 LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIAL  167 (258)
Q Consensus        88 ~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  167 (258)
                      ++. . ..+..+++|+.+.+..+...+.  ..+...+.++.+.++.+.+.... .+...++++++++.+|.+.+.  ..+
T Consensus        97 ~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~--~~l  169 (227)
T d1h6ua2          97 LKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL--TPL  169 (227)
T ss_dssp             CSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             ccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh-hhccccccccccccccccccc--hhh
Confidence            763 2 3567889999999988776533  34566788888888887765432 456778899999999987643  347


Q ss_pred             hcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccC
Q 035481          168 LRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH  228 (258)
Q Consensus       168 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~  228 (258)
                      ..+++|+.|++++|.++. + ..+.++++|++|++++|++++..  .+.++++|+.|++++
T Consensus       170 ~~l~~L~~L~Ls~n~l~~-l-~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISD-I-SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             cccccceecccCCCccCC-C-hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            788999999999999864 3 34788999999999999988543  478999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-18  Score=129.84  Aligned_cols=218  Identities=15%  Similarity=0.055  Sum_probs=161.3

Q ss_pred             cEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCC-CCCcCCCCCccceEEecC
Q 035481           31 ETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGD-IPHWIGNFSGLWVLLMSE  109 (258)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~l~l~~  109 (258)
                      +.++.++..++.+ |..+.  +.+++|++++|.++.....+|..+++|+++++++|.+... .+..+..++.++++.+..
T Consensus        11 ~~i~c~~~~l~~i-P~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEI-PSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSC-CSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCc-CCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            5677777766633 33332  4789999999999866667789999999999999987643 345677899999998764


Q ss_pred             -ccccCCcCccccCCCCccEEEcccccceeecC--CCCCcCCCcEEEeecccccccCccchhcC-CCceEEEccCCcccC
Q 035481          110 -NYLQGSIPVQLGNLVCLEFIDISENSLSGSMV--SLSNLSSVEHIYLHNNAINGLIPIALLRS-STLLTLDLRDNKLFG  185 (258)
Q Consensus       110 -~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~  185 (258)
                       +.+....+..+.++++|+.+++..+.+...+.  .......+..+...++.+.......+..+ ..+..+++.++.++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             55665666778899999999999998865432  22344555556666666766656666655 478999999999875


Q ss_pred             CCChhhccCCCccEEE-eeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcc
Q 035481          186 RIPHQINELSNLHFLL-LRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDY  252 (258)
Q Consensus       186 ~~~~~~~~~~~L~~L~-l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~  252 (258)
                      ..+..+ ..+++..+. +.+|.+++..+..|.++++|++|++++|+++...+..|.+++.|+.+++.+
T Consensus       168 i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         168 IHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            544444 446666654 566788765566789999999999999999843345689999999888754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.1e-17  Score=121.69  Aligned_cols=163  Identities=22%  Similarity=0.275  Sum_probs=87.4

Q ss_pred             CCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEee
Q 035481           76 TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLH  155 (258)
Q Consensus        76 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~  155 (258)
                      .+|+.+++.++.+...  ..+..+++|++|++.+|.+++. + .++.+++|+.|++++|.+...+ .+..+++|+.+++.
T Consensus        46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccccc-cccccccccccccc
Confidence            3444555555444321  1234455555555555555422 1 2344555555555555554433 34445555666665


Q ss_pred             cccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCC
Q 035481          156 NNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI  235 (258)
Q Consensus       156 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~  235 (258)
                      +|.+...  ..+..++.++.++++++.++.  ...+..+++|+++++++|++.+.  ..+.++++|++|++++|.++ .+
T Consensus       121 ~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~-~l  193 (210)
T d1h6ta2         121 HNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS-DL  193 (210)
T ss_dssp             TSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-BC
T ss_pred             ccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc--ccccCCCCCCEEECCCCCCC-CC
Confidence            5554422  234555666666666666532  23445566677777777666532  23566667777777777665 34


Q ss_pred             Ccccccccchhhhhhc
Q 035481          236 PSCLGNVSSWREVIDD  251 (258)
Q Consensus       236 ~~~~~~l~~L~~l~l~  251 (258)
                      + .+..+++|+.|+++
T Consensus       194 ~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             G-GGTTCTTCSEEEEE
T ss_pred             h-hhcCCCCCCEEEcc
Confidence            4 46666667666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.4e-17  Score=120.03  Aligned_cols=161  Identities=23%  Similarity=0.306  Sum_probs=102.6

Q ss_pred             CCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEe
Q 035481           75 STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYL  154 (258)
Q Consensus        75 l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l  154 (258)
                      +.+++++++.++.+.. + ..+..+++|++|++.+|.+++..  .++.+++|+.|+++.|.+.... .+..++.|+.+++
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCccccccccccccccccc-ccccccccccccc
Confidence            3455555555555542 1 23455666666666666655332  2556666666666666554433 3556667777777


Q ss_pred             ecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecC
Q 035481          155 HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP  234 (258)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~  234 (258)
                      +++.....  ..+..+++|+.+++++|.+.. . ..+..+++++.|++.+|++++.  ..+.++++|++|++++|+++ .
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~-~  186 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS-D  186 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-C
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC-C
Confidence            76665532  345667788888888887742 2 3567788888888888887743  34778888888888888887 3


Q ss_pred             CCcccccccchhhh
Q 035481          235 IPSCLGNVSSWREV  248 (258)
Q Consensus       235 ~~~~~~~l~~L~~l  248 (258)
                      ++ .++++++|+.|
T Consensus       187 i~-~l~~L~~L~~L  199 (199)
T d2omxa2         187 IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCcC
Confidence            44 47777777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.3e-17  Score=119.93  Aligned_cols=166  Identities=25%  Similarity=0.384  Sum_probs=117.0

Q ss_pred             CCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEE
Q 035481           50 NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFI  129 (258)
Q Consensus        50 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L  129 (258)
                      .+.++++|+++++.++..  ..+..+++|++|++++|.++.. + .+..+++|+.+++.+|.++. ++ .+..+++|+.+
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            355677777777776532  2356677777787777777632 2 34667778888887777763 33 46677788888


Q ss_pred             EcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecc
Q 035481          130 DISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQG  209 (258)
Q Consensus       130 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  209 (258)
                      ++.++.+... ..+..++.++.+++.+|.+++.  ..+..+++|+++++++|.+++. + .+.++++|+.|++++|++++
T Consensus       118 ~l~~~~~~~~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccc-cccccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC
Confidence            8877776543 3456677788888888877643  3456678888888888888643 2 37788889999999888874


Q ss_pred             cCCccccCCCcccEEEccC
Q 035481          210 RIPNQLCQLRKLGIMDLSH  228 (258)
Q Consensus       210 ~~~~~l~~~~~L~~l~l~~  228 (258)
                       ++ .+..+++|++|+|++
T Consensus       193 -l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEccC
Confidence             33 578888899888864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=5.2e-16  Score=121.36  Aligned_cols=231  Identities=29%  Similarity=0.311  Sum_probs=139.1

Q ss_pred             cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      +++.|++++++++ .+|.    ..++|++|++++|+++.+ +..   ..+|+.|++.++.++.. +.   -.+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~~l-~~---lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLKAL-SD---LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSCC-CS---CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccchh-hh---hccccccccc
Confidence            5788999999988 7774    257899999999988743 332   35788888888877632 21   1246888888


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCc------------------CccccCCCCccEEEcccccceee------
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI------------------PVQLGNLVCLEFIDISENSLSGS------  139 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~------------------~~~~~~~~~L~~L~l~~~~~~~~------  139 (258)
                      ++|.+. .+|. +..+++|+.+++.++.+....                  ...+..++.++.+.+..+.....      
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             cccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccc
Confidence            888776 4443 466788888888776543211                  11233455666676665543221      


Q ss_pred             -------------cCCCCCcCCCcEEEeecccccccCc----------------cchhcCCCceEEEccCCcccC-----
Q 035481          140 -------------MVSLSNLSSVEHIYLHNNAINGLIP----------------IALLRSSTLLTLDLRDNKLFG-----  185 (258)
Q Consensus       140 -------------~~~~~~~~~L~~l~l~~~~~~~~~~----------------~~~~~~~~L~~L~l~~~~~~~-----  185 (258)
                                   ......++.++.+++++|.......                ........+...++..+....     
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~  263 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP  263 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                         1123345667777777665432211                000011222333332221110     


Q ss_pred             -----------CCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccc
Q 035481          186 -----------RIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL  254 (258)
Q Consensus       186 -----------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~  254 (258)
                                 ........+++|++|++++|++. .+|..   +++|+.|++++|+++ .+|+.   +++|+.|++++|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred             chhcccccccCccccccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc
Confidence                       01111223578899999998887 45533   568888999999887 56653   4578888899998


Q ss_pred             cCC
Q 035481          255 LSG  257 (258)
Q Consensus       255 ~~~  257 (258)
                      ++.
T Consensus       336 L~~  338 (353)
T d1jl5a_         336 LRE  338 (353)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.4e-17  Score=116.96  Aligned_cols=176  Identities=25%  Similarity=0.318  Sum_probs=136.6

Q ss_pred             ecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccc
Q 035481            9 DLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKL   88 (258)
Q Consensus         9 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~   88 (258)
                      .++.+.+++.++.   ..+++++.|+++++.+...  ..+..+++|++|++++|+++...  .+..+++|+++++++|.+
T Consensus        24 ~l~~~~~~~~~~~---~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          24 VLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HTTCSSTTSEECH---HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HhCCCCCCCccCH---HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccc
Confidence            4555555533222   3467899999999988753  45778899999999999887433  378889999999999887


Q ss_pred             cCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchh
Q 035481           89 SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALL  168 (258)
Q Consensus        89 ~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~  168 (258)
                      .. . ..+..++.|+.+++.++.....  ..+..+++|+.+++++|.+... ..+..+++++.+++.+|.+++.  ..+.
T Consensus        97 ~~-~-~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~~l--~~l~  169 (199)
T d2omxa2          97 AD-I-TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDL--KPLA  169 (199)
T ss_dssp             CC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCC--GGGT
T ss_pred             cc-c-cccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc-ccccccccccccccccccccCC--cccc
Confidence            63 2 2477899999999988877633  3577889999999999988654 3577889999999999988764  3478


Q ss_pred             cCCCceEEEccCCcccCCCChhhccCCCccEE
Q 035481          169 RSSTLLTLDLRDNKLFGRIPHQINELSNLHFL  200 (258)
Q Consensus       169 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  200 (258)
                      ++++|++|++++|++++ + ..+.++++|+.|
T Consensus       170 ~l~~L~~L~ls~N~i~~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         170 NLTTLERLDISSNKVSD-I-SVLAKLTNLESL  199 (199)
T ss_dssp             TCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             CCCCCCEEECCCCCCCC-C-ccccCCCCCCcC
Confidence            89999999999999864 3 357888998876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=6.7e-18  Score=121.08  Aligned_cols=129  Identities=19%  Similarity=0.237  Sum_probs=107.3

Q ss_pred             ceEEecCcCccccccCcccccCCCCccEEECCCCcccc-ccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481            5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-QLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV   83 (258)
Q Consensus         5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l   83 (258)
                      .++++.++++++ .+|.++   .+++++|++++|.++. .....|.++++|++|++++|.+....+..+..+++|++|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            467889999998 888876   3688999999999865 44566788899999999999888777788888899999999


Q ss_pred             cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccce
Q 035481           84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS  137 (258)
Q Consensus        84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  137 (258)
                      ++|.+....+..|.++++|++|++.+|.+++..+..|..+++|+++++++|.+.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            999888777777888899999999999888777777888888888888887764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9e-19  Score=133.34  Aligned_cols=221  Identities=16%  Similarity=0.156  Sum_probs=134.7

Q ss_pred             eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCccEEEcc
Q 035481            6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEVLNVS   84 (258)
Q Consensus         6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~   84 (258)
                      +++|++++.+.+.+....+.  ..+..+.++...+.. .........+|++|+++++.++.. ....+..+++|+++++.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~-~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeecccccccc-chhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788777654333333332  234455555544331 112223445788888887766532 22335667788888888


Q ss_pred             CccccCCCCCcCCCCCccceEEecCcc-ccCCc-CccccCCCCccEEEccccc-cee--ecCCCC-CcCCCcEEEeeccc
Q 035481           85 NNKLSGDIPHWIGNFSGLWVLLMSENY-LQGSI-PVQLGNLVCLEFIDISENS-LSG--SMVSLS-NLSSVEHIYLHNNA  158 (258)
Q Consensus        85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~-~~~~L~~l~l~~~~  158 (258)
                      ++.+....+..+..+++|++|++.++. ++... ......+++|++|++++|. +.+  ....+. .++.|+.++++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            877654445556677888888887753 33211 1123457788888887753 322  111122 34678888887653


Q ss_pred             --cccc-CccchhcCCCceEEEccCCc-ccCCCChhhccCCCccEEEeeCC-eecccCCccccCCCcccEEEccCc
Q 035481          159 --INGL-IPIALLRSSTLLTLDLRDNK-LFGRIPHQINELSNLHFLLLRGN-YLQGRIPNQLCQLRKLGIMDLSHN  229 (258)
Q Consensus       159 --~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~l~l~~~  229 (258)
                        +++. ......++++|++|++++|. +++.....+..+++|++|++++| .+++.....+.++++|+.|++++|
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              3322 22334567888888888864 45455566777888888888886 566665666778888888888887

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2.9e-17  Score=117.70  Aligned_cols=151  Identities=19%  Similarity=0.151  Sum_probs=119.0

Q ss_pred             cceEEecCccccCCcCccccCCCCccEEEccccccee-e-cCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEcc
Q 035481          102 LWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-S-MVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR  179 (258)
Q Consensus       102 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~  179 (258)
                      .+.+++.++.++ .+|..+.  +.+++|++++|.+.. . ...+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            457888888887 5565543  688999999999965 3 3456788999999999999988888888899999999999


Q ss_pred             CCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481          180 DNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  256 (258)
                      +|.+....+.+|.++++|++|++++|++++..+.+|..+++|++++|++|.+.. ......-...++...+..+.++
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~-~~~~~~~~~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLAWFAEWLRKKSLNGGAAR  162 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC-SGGGHHHHHHHHHHCCSGGGCB
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc-ccchHHHhhhhhhhcccCCCeE
Confidence            999987788889999999999999999998888889999999999999998873 2222222234566666655543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-19  Score=147.06  Aligned_cols=86  Identities=16%  Similarity=0.051  Sum_probs=56.5

Q ss_pred             CCceEEEccCCcccCCCCh----hhccCCCccEEEeeCCeecccC----Ccccc-CCCcccEEEccCceeec----CCCc
Q 035481          171 STLLTLDLRDNKLFGRIPH----QINELSNLHFLLLRGNYLQGRI----PNQLC-QLRKLGIMDLSHNRLNG----PIPS  237 (258)
Q Consensus       171 ~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~----~~~l~-~~~~L~~l~l~~~~~~~----~~~~  237 (258)
                      ..|+.++++++.+......    .+...++|++|++++|.+.+..    +..+. ..+.|++|+|++|.+++    .+++
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            4566777777665433222    3345567888888888876432    22332 35668888888888863    2445


Q ss_pred             ccccccchhhhhhcccccC
Q 035481          238 CLGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       238 ~~~~l~~L~~l~l~~~~~~  256 (258)
                      .+..+++|++|++++|+|+
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCC
T ss_pred             HHhcCCCCCEEECCCCcCC
Confidence            5677788888888888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=1.5e-14  Score=112.86  Aligned_cols=221  Identities=25%  Similarity=0.238  Sum_probs=141.2

Q ss_pred             CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCC-cccceeecccccccccCCcccCCCCCccE
Q 035481            2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNL-THLRSLLLDNNNFSGKMTDGLLSSTLLEV   80 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   80 (258)
                      +++|++|++++|+++ ++|..    ..+|+.|++++|.++.+.     .+ +.|++|++++|.+... + .+..+++|+.
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l~-----~lp~~L~~L~L~~n~l~~l-p-~~~~l~~L~~  124 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNNQLEKL-P-ELQNSSFLKI  124 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCC-----SCCTTCCEEECCSSCCSSC-C-CCTTCTTCCE
T ss_pred             CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchhh-----hhccccccccccccccccc-c-chhhhcccee
Confidence            478999999999998 78753    468999999999876432     22 4689999999988743 3 3567888999


Q ss_pred             EEccCccccCC------------------CCCcCCCCCccceEEecCccccCC------------------cCccccCCC
Q 035481           81 LNVSNNKLSGD------------------IPHWIGNFSGLWVLLMSENYLQGS------------------IPVQLGNLV  124 (258)
Q Consensus        81 l~l~~~~~~~~------------------~~~~l~~l~~L~~l~l~~~~~~~~------------------~~~~~~~~~  124 (258)
                      +++.++.+...                  ....+..++.++.+.+..+.....                  .......++
T Consensus       125 L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  204 (353)
T d1jl5a_         125 IDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP  204 (353)
T ss_dssp             EECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCT
T ss_pred             eccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccc
Confidence            99887765421                  112234456677777665543211                  011234567


Q ss_pred             CccEEEcccccceeecCCCC-----------------CcCCCcEEEeeccccccc----------------CccchhcCC
Q 035481          125 CLEFIDISENSLSGSMVSLS-----------------NLSSVEHIYLHNNAINGL----------------IPIALLRSS  171 (258)
Q Consensus       125 ~L~~L~l~~~~~~~~~~~~~-----------------~~~~L~~l~l~~~~~~~~----------------~~~~~~~~~  171 (258)
                      .++.++++.+.....+....                 ....+...++..+.+...                .......++
T Consensus       205 ~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  284 (353)
T d1jl5a_         205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP  284 (353)
T ss_dssp             TCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCC
Confidence            78888887765533221110                 112333344333322111                112223457


Q ss_pred             CceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccccccc
Q 035481          172 TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVS  243 (258)
Q Consensus       172 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~  243 (258)
                      +|++|++++|.+. .+|.   .+++|+.|++++|+++ .+|..   +.+|++|++++|+++ .+|.....+.
T Consensus       285 ~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~  347 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVE  347 (353)
T ss_dssp             TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCC
T ss_pred             CCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccC
Confidence            9999999999987 4453   4689999999999998 45543   458999999999997 6776433333

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.2e-18  Score=130.24  Aligned_cols=221  Identities=17%  Similarity=0.134  Sum_probs=152.7

Q ss_pred             cEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCC-CCCcCCCCCccceEEecC
Q 035481           31 ETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGD-IPHWIGNFSGLWVLLMSE  109 (258)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~l~l~~  109 (258)
                      +++|++++.+.......+.. .....+.+........ ........+|++++++++.++.. ....+..+++|++|++.+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccc-hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            47888887664221111111 1233455554433321 12233456899999999877632 334567899999999999


Q ss_pred             ccccCCcCccccCCCCccEEEcccc-cceee--cCCCCCcCCCcEEEeeccc-cccc-Ccc-chhcCCCceEEEccCCcc
Q 035481          110 NYLQGSIPVQLGNLVCLEFIDISEN-SLSGS--MVSLSNLSSVEHIYLHNNA-INGL-IPI-ALLRSSTLLTLDLRDNKL  183 (258)
Q Consensus       110 ~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~~L~~l~l~~~~-~~~~-~~~-~~~~~~~L~~L~l~~~~~  183 (258)
                      +.+.......++.+++|+.|+++++ .+++.  ......+++|++|++++|. +++. ... ....++.|+.|+++++..
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            9887666677888999999999986 45432  1223467999999999974 4332 112 223457999999998742


Q ss_pred             --cC-CCChhhccCCCccEEEeeCC-eecccCCccccCCCcccEEEccCc-eeecCCCcccccccchhhhhhccc
Q 035481          184 --FG-RIPHQINELSNLHFLLLRGN-YLQGRIPNQLCQLRKLGIMDLSHN-RLNGPIPSCLGNVSSWREVIDDYS  253 (258)
Q Consensus       184 --~~-~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~l~~L~~l~l~~~  253 (258)
                        +. .+...+.++|+|++|++++| .+++.....+.++++|++|++++| .+++.....+.++++|+.|++.+|
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              21 12233467899999999998 577677788889999999999997 476666667889999999999888

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-16  Score=110.25  Aligned_cols=128  Identities=17%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             CCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceE
Q 035481           96 IGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT  175 (258)
Q Consensus        96 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  175 (258)
                      +.+..++++|++.+|.++ .++..+..+++|+.|++++|.+... +.+..+++|++|++++|.++...+..+..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            345566777777777766 3344445566677777777766655 34556666666666666666554444555666666


Q ss_pred             EEccCCcccCCCC-hhhccCCCccEEEeeCCeecccC---CccccCCCcccEEE
Q 035481          176 LDLRDNKLFGRIP-HQINELSNLHFLLLRGNYLQGRI---PNQLCQLRKLGIMD  225 (258)
Q Consensus       176 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~---~~~l~~~~~L~~l~  225 (258)
                      |++++|.+..... ..+..+++|++|++++|.+.+..   +..+..+|+|+.||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666666542211 24455566666666666554321   12344555665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.61  E-value=6.1e-18  Score=132.37  Aligned_cols=232  Identities=17%  Similarity=0.127  Sum_probs=104.4

Q ss_pred             cCCCCccEEECCCCcccccc----CccccCCcccceeeccccccccc----------CCcccCCCCCccEEEccCccccC
Q 035481           25 SGCPSLETLDLSNNNFYGQL----FPNYMNLTHLRSLLLDNNNFSGK----------MTDGLLSSTLLEVLNVSNNKLSG   90 (258)
Q Consensus        25 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----------~~~~~~~l~~L~~l~l~~~~~~~   90 (258)
                      .....++.|++++|.+....    ...+...+.|+.++++++.....          ....+...++|+.+++++|.++.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            33455556666655553222    12233445555555554432110          11123334556666666555442


Q ss_pred             C----CCCcCCCCCccceEEecCccccCCcCc-------------cccCCCCccEEEccccccee-----ecCCCCCcCC
Q 035481           91 D----IPHWIGNFSGLWVLLMSENYLQGSIPV-------------QLGNLVCLEFIDISENSLSG-----SMVSLSNLSS  148 (258)
Q Consensus        91 ~----~~~~l~~l~~L~~l~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~  148 (258)
                      .    +...+..+++|+++++.+|.+......             .....+.|+.++++.+.+..     +...+..++.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            2    112223345566666655543211000             01233455556555554432     1112234455


Q ss_pred             CcEEEeeccccccc-----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccCCc----cc
Q 035481          149 VEHIYLHNNAINGL-----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRIPN----QL  215 (258)
Q Consensus       149 L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~----~l  215 (258)
                      ++.+++++|.+...     ....+...++|+.|++++|.++..    +...+..+++|++|++++|.+.+....    .+
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l  267 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  267 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHh
Confidence            66666666655421     223344455666666666654321    223344556666666666655432211    12


Q ss_pred             cC--CCcccEEEccCceeecC----CCcccc-cccchhhhhhcccccC
Q 035481          216 CQ--LRKLGIMDLSHNRLNGP----IPSCLG-NVSSWREVIDDYSLLS  256 (258)
Q Consensus       216 ~~--~~~L~~l~l~~~~~~~~----~~~~~~-~l~~L~~l~l~~~~~~  256 (258)
                      ..  .+.|++|++++|.++..    +...+. +++.|+.|++++|+++
T Consensus       268 ~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            11  24466666666655421    222232 3455666666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-15  Score=105.51  Aligned_cols=127  Identities=19%  Similarity=0.115  Sum_probs=79.2

Q ss_pred             ccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccE
Q 035481          120 LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHF  199 (258)
Q Consensus       120 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  199 (258)
                      +..+.+++.|++++|.+..+......++.|+.|++++|.++..  +.+..+++|++|++++|.++...+..+..+++|+.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3455667777777777766554445566777777777776644  23566677777777777766554555566677777


Q ss_pred             EEeeCCeecccCC-ccccCCCcccEEEccCceeecCCCc----ccccccchhhhh
Q 035481          200 LLLRGNYLQGRIP-NQLCQLRKLGIMDLSHNRLNGPIPS----CLGNVSSWREVI  249 (258)
Q Consensus       200 L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~----~~~~l~~L~~l~  249 (258)
                      |++++|++.+... ..+..+++|+++++++|.++ ..+.    .+..+|+|+.|+
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            7777776653321 34566677777777777765 3332    355666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.59  E-value=2.9e-17  Score=128.50  Aligned_cols=231  Identities=21%  Similarity=0.206  Sum_probs=163.7

Q ss_pred             CCcceEEecCcCcccccc---CcccccCCCCccEEECCCCccccc----------cCccccCCcccceeecccccccccC
Q 035481            2 MKELITLDLSRNNFSGEL---SRPIFSGCPSLETLDLSNNNFYGQ----------LFPNYMNLTHLRSLLLDNNNFSGKM   68 (258)
Q Consensus         2 ~~~L~~L~l~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~~~~~   68 (258)
                      +..|+.|++++|.+.+..   -...+...++|+.++++++.....          ....+..+++|+.|++++|.+....
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            567999999999876322   123456789999999998754321          1233456789999999999876432


Q ss_pred             C----cccCCCCCccEEEccCccccCCCC----C---------cCCCCCccceEEecCccccCCc----CccccCCCCcc
Q 035481           69 T----DGLLSSTLLEVLNVSNNKLSGDIP----H---------WIGNFSGLWVLLMSENYLQGSI----PVQLGNLVCLE  127 (258)
Q Consensus        69 ~----~~~~~l~~L~~l~l~~~~~~~~~~----~---------~l~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~  127 (258)
                      .    ..+...++|+.+++++|.+.....    .         .....+.|+.+.+..+.+....    ...+..++.++
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence            2    234456899999999987642100    0         1134678899999888765322    22345678999


Q ss_pred             EEEccccccee------ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCCCC----hhhc-
Q 035481          128 FIDISENSLSG------SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGRIP----HQIN-  192 (258)
Q Consensus       128 ~L~l~~~~~~~------~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~-  192 (258)
                      .++++.|.+..      ....+..+++|+.|++++|.++..    ....+..+++|++|++++|.+.....    .++. 
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            99999998864      234566789999999999988643    34566788999999999999864322    2333 


Q ss_pred             -cCCCccEEEeeCCeecccC----Ccccc-CCCcccEEEccCceee
Q 035481          193 -ELSNLHFLLLRGNYLQGRI----PNQLC-QLRKLGIMDLSHNRLN  232 (258)
Q Consensus       193 -~~~~L~~L~l~~~~l~~~~----~~~l~-~~~~L~~l~l~~~~~~  232 (258)
                       ..+.|++|++++|.+....    ...+. +++.|++|+|++|.+.
T Consensus       270 ~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             3478999999999987533    33343 5788999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-17  Score=133.73  Aligned_cols=111  Identities=17%  Similarity=0.155  Sum_probs=78.0

Q ss_pred             cCCCcEEEeecccccccC----ccchhcCCCceEEEccCCcccCC----CChhhc-cCCCccEEEeeCCeeccc----CC
Q 035481          146 LSSVEHIYLHNNAINGLI----PIALLRSSTLLTLDLRDNKLFGR----IPHQIN-ELSNLHFLLLRGNYLQGR----IP  212 (258)
Q Consensus       146 ~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~~~l~~~----~~  212 (258)
                      ...++.+++.++.++...    ...+...++|++|++++|.+...    ++..+. ..+.|++|++++|.+++.    +.
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            356788888888776442    23445667899999999988532    222333 467899999999998753    34


Q ss_pred             ccccCCCcccEEEccCceeecCCC----cccc-cccchhhhhhcccccC
Q 035481          213 NQLCQLRKLGIMDLSHNRLNGPIP----SCLG-NVSSWREVIDDYSLLS  256 (258)
Q Consensus       213 ~~l~~~~~L~~l~l~~~~~~~~~~----~~~~-~l~~L~~l~l~~~~~~  256 (258)
                      ..+..+++|++|+|++|.++....    ..++ ....|+.|.+.+|.+.
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            456677999999999999874322    2333 2336899999888774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.2e-14  Score=95.91  Aligned_cols=102  Identities=28%  Similarity=0.347  Sum_probs=81.6

Q ss_pred             cEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCe
Q 035481          127 EFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNY  206 (258)
Q Consensus       127 ~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (258)
                      |.|++++|.++... .+..++.|+++++++|.+++. +..+..+++|++|++++|.++. ++ .+..+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcc-hhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            57888888887664 577888899999999988754 4567888999999999998864 33 57888999999999998


Q ss_pred             ecccC-CccccCCCcccEEEccCceee
Q 035481          207 LQGRI-PNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       207 l~~~~-~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      +.+.. ...+..+++|+.+++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            87543 356788889999999998886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1e-13  Score=91.33  Aligned_cols=15  Identities=40%  Similarity=0.498  Sum_probs=5.8

Q ss_pred             cCCCccEEEeeCCee
Q 035481          193 ELSNLHFLLLRGNYL  207 (258)
Q Consensus       193 ~~~~L~~L~l~~~~l  207 (258)
                      .+++|++|++++|++
T Consensus        88 ~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          88 SCPRLVLLNLQGNSL  102 (124)
T ss_dssp             GCTTCCEEECTTSGG
T ss_pred             CCCCCCEEECCCCcC
Confidence            333333333333333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.9e-13  Score=92.92  Aligned_cols=109  Identities=18%  Similarity=0.090  Sum_probs=87.8

Q ss_pred             CCCccEEEcccccceeecCCCCCcCCCcEEEeecc-cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEE
Q 035481          123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNN-AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLL  201 (258)
Q Consensus       123 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  201 (258)
                      +.....++..++...+.+..+...+++++|++.++ .++...+..|.++++|+.|++++|.+....+.+|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            44456677777777777777888889999999766 47777777888899999999999999877788899999999999


Q ss_pred             eeCCeecccCCccccCCCcccEEEccCceee
Q 035481          202 LRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN  232 (258)
Q Consensus       202 l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~  232 (258)
                      +++|++....+..+.. ..|++|+|++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            9999998555555544 46999999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.39  E-value=3.7e-15  Score=106.83  Aligned_cols=109  Identities=21%  Similarity=0.268  Sum_probs=47.4

Q ss_pred             cCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCce
Q 035481           95 WIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLL  174 (258)
Q Consensus        95 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~  174 (258)
                      .+..+++|++|++.+|.++. ++ .+..+++|+.|++++|.+..++......+.|+.|++++|.++..  ..+..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccccccccccccccccccccccccccc--cccccccccc
Confidence            34445555555555555542 22 24445555555555555443332222233444455544444422  1233344444


Q ss_pred             EEEccCCcccCCCC-hhhccCCCccEEEeeCCee
Q 035481          175 TLDLRDNKLFGRIP-HQINELSNLHFLLLRGNYL  207 (258)
Q Consensus       175 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l  207 (258)
                      .|++++|.++.... ..+..+++|+.|++++|++
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCcc
Confidence            44444444432111 2334444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=88.08  Aligned_cols=109  Identities=19%  Similarity=0.107  Sum_probs=85.4

Q ss_pred             CCCccceEEecCccccCCcCccccCCCCccEEEcccc-cceeec-CCCCCcCCCcEEEeecccccccCccchhcCCCceE
Q 035481           98 NFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN-SLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT  175 (258)
Q Consensus        98 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~  175 (258)
                      .+.....+++.++... ..+..+..+++|+.|++.++ .+..+. ..+..+++|+.|++++|.++.+.+.+|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3445567777777776 55667788889999999765 476655 45778899999999999998888888999999999


Q ss_pred             EEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481          176 LDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ  208 (258)
Q Consensus       176 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  208 (258)
                      |+|++|.++...+..+.. .+|+.|++++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            999999997555555544 57999999998774

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=7.4e-15  Score=105.20  Aligned_cols=134  Identities=21%  Similarity=0.222  Sum_probs=86.1

Q ss_pred             CccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCC
Q 035481          117 PVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSN  196 (258)
Q Consensus       117 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  196 (258)
                      +..+..+++|+.|++++|.+..+. .+..+++|+.|++++|.++.. +.....+++|++|++++|.++..  ..+..+++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccc-ccccccccccccccccccccccc--cccccccc
Confidence            345666777888888877776553 566777788888888877643 33334455777888888777532  34666777


Q ss_pred             ccEEEeeCCeecccCC-ccccCCCcccEEEccCceeecCCCcc----------cccccchhhhhhcccccC
Q 035481          197 LHFLLLRGNYLQGRIP-NQLCQLRKLGIMDLSHNRLNGPIPSC----------LGNVSSWREVIDDYSLLS  256 (258)
Q Consensus       197 L~~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~~----------~~~l~~L~~l~l~~~~~~  256 (258)
                      |+.|++++|++.+... ..+..+++|+.|++++|++....+..          +..+|+|+.|  ++.+++
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~L--D~~~I~  185 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL--DGMPVD  185 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEE--SSGGGT
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEe--CCccCC
Confidence            8888888877764321 35667778888888887765322221          4456666654  344443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2e-09  Score=73.90  Aligned_cols=82  Identities=22%  Similarity=0.208  Sum_probs=46.2

Q ss_pred             hhcCCCceEEEccCCcccCCC--ChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc-------
Q 035481          167 LLRSSTLLTLDLRDNKLFGRI--PHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS-------  237 (258)
Q Consensus       167 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~-------  237 (258)
                      ...+++|++|++++|.++...  +..+..+++|+.|++++|.+.+..+........|+++++++|++.+....       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            345666777777777665332  23455667777777777776643332333344567777777766533221       


Q ss_pred             ccccccchhhh
Q 035481          238 CLGNVSSWREV  248 (258)
Q Consensus       238 ~~~~l~~L~~l  248 (258)
                      .+..+|+|+.|
T Consensus       141 i~~~~P~L~~L  151 (162)
T d1koha1         141 IRERFPKLLRL  151 (162)
T ss_dssp             HHTTSTTCCEE
T ss_pred             HHHHCCCCCEE
Confidence            24456666644

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.4e-08  Score=68.39  Aligned_cols=85  Identities=26%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             ccccCCCCccEEECCCCccccccC--ccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCC-----
Q 035481           22 PIFSGCPSLETLDLSNNNFYGQLF--PNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPH-----   94 (258)
Q Consensus        22 ~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-----   94 (258)
                      .++..+++|++|++++|.++.+.+  ..+..+++|+.|++++|.++....-.......|+.+++.+|.+......     
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            344567888888888888865432  3355678888888888887744332233345678888888877633322     


Q ss_pred             --cCCCCCccceEE
Q 035481           95 --WIGNFSGLWVLL  106 (258)
Q Consensus        95 --~l~~l~~L~~l~  106 (258)
                        .+..+|+|+.|+
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              245678888774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.17  E-value=1.4e-07  Score=64.77  Aligned_cols=110  Identities=15%  Similarity=0.085  Sum_probs=71.6

Q ss_pred             CCCCccEEEcccc-ccee-----ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC----C
Q 035481          122 NLVCLEFIDISEN-SLSG-----SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR----I  187 (258)
Q Consensus       122 ~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~  187 (258)
                      ..+.|+.|+++++ .+..     +...+...+.|++|++++|.+.+.    ....+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578888888764 3432     233455667888888888877643    334555667888888888877532    2


Q ss_pred             ChhhccCCCccEEEeeCCeecc-------cCCccccCCCcccEEEccCcee
Q 035481          188 PHQINELSNLHFLLLRGNYLQG-------RIPNQLCQLRKLGIMDLSHNRL  231 (258)
Q Consensus       188 ~~~~~~~~~L~~L~l~~~~l~~-------~~~~~l~~~~~L~~l~l~~~~~  231 (258)
                      ..++...+.|++|++++|....       .+...+...+.|++++++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            2345666788888888775432       1234455567888888876543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=4.4e-07  Score=62.20  Aligned_cols=108  Identities=10%  Similarity=0.066  Sum_probs=52.5

Q ss_pred             CCCccceEEecCc-cccCC----cCccccCCCCccEEEcccccceee-----cCCCCCcCCCcEEEeeccccccc----C
Q 035481           98 NFSGLWVLLMSEN-YLQGS----IPVQLGNLVCLEFIDISENSLSGS-----MVSLSNLSSVEHIYLHNNAINGL----I  163 (258)
Q Consensus        98 ~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~----~  163 (258)
                      +.+.|++|++.++ .+...    +...+...+.|+.|++++|.+...     ...+...+.|++|++++|.+++.    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455666666543 23211    122344455666666666655431     11222345666666666655432    2


Q ss_pred             ccchhcCCCceEEEccCCcccCC-------CChhhccCCCccEEEeeCC
Q 035481          164 PIALLRSSTLLTLDLRDNKLFGR-------IPHQINELSNLHFLLLRGN  205 (258)
Q Consensus       164 ~~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~  205 (258)
                      ..++...++|++|+++++.....       +...+...+.|+.|+++++
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            23444455666666666543221       1223344566666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.58  E-value=1.6e-06  Score=59.20  Aligned_cols=111  Identities=17%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             cCCCCccEEEcccc-ccee-----ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC----
Q 035481          121 GNLVCLEFIDISEN-SLSG-----SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR----  186 (258)
Q Consensus       121 ~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----  186 (258)
                      ...+.|+.|+++++ .+..     +...+...+.|++|++++|.+++.    +...+...+.++.++++++.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            45578888888763 4432     233444667888888888876543    334555667888888888776422    


Q ss_pred             CChhhccCCCccEEEee--CCeecc----cCCccccCCCcccEEEccCcee
Q 035481          187 IPHQINELSNLHFLLLR--GNYLQG----RIPNQLCQLRKLGIMDLSHNRL  231 (258)
Q Consensus       187 ~~~~~~~~~~L~~L~l~--~~~l~~----~~~~~l~~~~~L~~l~l~~~~~  231 (258)
                      +..++...++|+.++++  +|.+.+    .+...+..++.|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            22445566778776654  445543    2344555677888888776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.47  E-value=1.2e-05  Score=54.63  Aligned_cols=109  Identities=14%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             CCCccceEEecCc-cccCC----cCccccCCCCccEEEccccccee-----ecCCCCCcCCCcEEEeeccccccc----C
Q 035481           98 NFSGLWVLLMSEN-YLQGS----IPVQLGNLVCLEFIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGL----I  163 (258)
Q Consensus        98 ~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~  163 (258)
                      +.+.|+++++.+. .+...    +...+...+.|+.|++++|.+..     +...+...+.++.+++.+|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4566666666552 23211    12234455666677776666543     112233455666666666655432    2


Q ss_pred             ccchhcCCCceEEEcc--CCcccC----CCChhhccCCCccEEEeeCCe
Q 035481          164 PIALLRSSTLLTLDLR--DNKLFG----RIPHQINELSNLHFLLLRGNY  206 (258)
Q Consensus       164 ~~~~~~~~~L~~L~l~--~~~~~~----~~~~~~~~~~~L~~L~l~~~~  206 (258)
                      ...+...++++.+++.  ++.+..    .+..++...++|+.|+++.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            3444455666655443  333321    122334456666666665553