Citrus Sinensis ID: 035482

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFELSSRDEDNQTVHQIRVPALPEFDVVGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPNLFEASVHEGSLSWIDSFSDNDK
cccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEccccccEEEEEEccccccccccEEEccccccccEEEEEEEccEEEEEccccccEEEEEccccccEEEcccccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccccEEEEEEccccccEEEcccccccccccccEEEcccEEEEEEEcccccccEEEEEEccccEEEEEcccccccccEEEEEEEccEEEEEEcccccEEEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccEEEEEEEEcccEEEEEEccEEEEEEccccEEEEEEEccccccEEEEEEEcccccccccccccc
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEEcccEEEEEEccccccccccccccccccccccEEEEEEccEEEEEEEcccccEEEEEccccccEEEEcccccccccEEEEEEEEccccccEEEEEEEEEEccccccccccccccEEEEEEEEccccEEEEcccccccccccccEEEEEEEEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEEccEEEEEEEcccEEEEEEEEccccccEEEEEEEEEcccccccccccccEEEEEEEEcccEEEEEEEEccccEEEEEEccEEEEEEccccccEEEEEEEccccccEEEEEEEEEEEEcccccccc
MEYLPQEIVLDilsrlpvtsLLHFKLVCKAWLNtaqnpllpslqfsrmakndpclilhcdypirnqlysfelssrdednqtvhqirvpalpefdvvgsckgllclcdsstknrlyvynpftrnyvelpkstefqtqdvvfgfgfhpttnkykvVKIDycrkthgnhryyrgygksEVQILTLGSQEwrslgqvnyhmleapsqvlvngrlhwctwpryrgpsrllisfdiadeqfrvvekpdelhRIHYDLVNLGgclsaavpcssgkeiwVMKEYDVKESWIKEynigihvprgleqdlsqsfrdskffrnrSFVRVLCLLKNGEILLEYKCRALvsynprneMFKDLLlhgtpnlfeasvhegslswidsfsdndk
MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFELSSRDEDNQTVHQIRVPALPEFDVVGSCKGLLCLCdsstknrlyvYNPFTRNYVELPKSTEFQTQDVVFGFgfhpttnkykvvKIDYCRKThgnhryyrgygKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRdskffrnrSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPNLFEASVHegslswidsfsdndk
MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFELSSRDEDNQTVHQIRVPALPEFDVVGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPNLFEASVHEGSLSWIDSFSDNDK
*****QEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFELSS****NQTVHQIRVPALPEFDVVGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPNLFEASVHEGSLSWI********
MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFELSSRDEDNQTVHQIRVPALPEFDVVGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPNLFEASVHEGSL***********
MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFELSSRDEDNQTVHQIRVPALPEFDVVGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPNLFEASVHEGSLSWIDSFSDNDK
*EYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFELSSRDEDNQTVHQIRVPALPEFDVVGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPNLFEASVHEGSLSWIDSF*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFELSSRDEDNQTVHQIRVPALPEFDVVGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPNLFEASVHEGSLSWIDSFSDNDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q9SFC7417 F-box protein At3g07870 O yes no 0.978 0.887 0.492 8e-95
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.886 0.811 0.273 8e-21
Q9LQL5302 Putative F-box protein At no no 0.674 0.844 0.289 2e-19
Q8GXC7427 F-box/kelch-repeat protei no no 0.867 0.768 0.248 5e-19
Q9SUY0402 F-box protein At4g22390 O no no 0.730 0.686 0.260 1e-16
Q9M0Q9383 Putative F-box protein At no no 0.679 0.671 0.234 3e-15
Q9FGY4359 F-box protein At5g49610 O no no 0.695 0.732 0.278 4e-15
Q9FGS3357 Putative F-box protein At no no 0.626 0.663 0.265 5e-15
O49421411 F-box protein At4g19940 O no no 0.693 0.637 0.251 8e-15
Q9ZNQ3347 F-box/LRR-repeat/kelch-re no no 0.544 0.593 0.293 3e-14
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function desciption
 Score =  347 bits (890), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 192/390 (49%), Positives = 254/390 (65%), Gaps = 20/390 (5%)

Query: 1   MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCD 60
           +E LP++I+ DI SRLP++S+     VC++W +         L  S  +   PCL+LHCD
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQH--GRLSSSSSSPTKPCLLLHCD 82

Query: 61  YPIRNQLYSFELSSRDEDNQTVH-QIR-VPALPEFDVVGSCKGLLCLCDSSTKNRLYVYN 118
            PIRN L+  +LS  ++  +T    +R   ++PEFDVVGSC GLLCL DS   + LY+YN
Sbjct: 83  SPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLYLYN 142

Query: 119 PFTRNYVELPK-STEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHR-YYRGYGK-- 174
           PFT N +ELP+ S ++  Q++VFGFGFH  T +YKV+KI Y R +  N+   YRG G+  
Sbjct: 143 PFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQ 202

Query: 175 ---SEVQILTLGSQ------EWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLL 225
              SEVQILTL S+       WRSLG+  Y  ++  S+ LVNGRLH+ T PR   P R  
Sbjct: 203 YKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKF 262

Query: 226 ISFDIADEQFRVVEKPD--ELHRIHYDLVNLGGCLSAAVPCSSGK-EIWVMKEYDVKESW 282
           +SFD+ DE+F+ + KPD   L+R ++ LVNL GCL A V  + GK +IWVMK Y VKESW
Sbjct: 263 VSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESW 322

Query: 283 IKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPR 342
            KEY+IG ++P+GL+Q+L +     K   N   VRVLCLL+NGEILLEYK R LV+Y+P+
Sbjct: 323 GKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDPK 382

Query: 343 NEMFKDLLLHGTPNLFEASVHEGSLSWIDS 372
              FKDLL HG PN F   VH G+LSW D+
Sbjct: 383 LGKFKDLLFHGLPNWFHTVVHAGTLSWFDT 412

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q9LQL5|FB30_ARATH Putative F-box protein At1g32420 OS=Arabidopsis thaliana GN=At1g32420 PE=4 SV=1 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q9M0Q9|FB223_ARATH Putative F-box protein At4g09190 OS=Arabidopsis thaliana GN=At4g09190 PE=4 SV=1 Back     alignment and function description
>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1 Back     alignment and function description
>sp|Q9FGS3|FB287_ARATH Putative F-box protein At5g50220 OS=Arabidopsis thaliana GN=At5g50220 PE=4 SV=1 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description
>sp|Q9ZNQ3|FBLK3_ARATH F-box/LRR-repeat/kelch-repeat protein At2g27520 OS=Arabidopsis thaliana GN=At2g27520 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
225447272409 PREDICTED: F-box protein At3g07870 [Viti 0.992 0.916 0.570 1e-113
224064862408 f-box family protein [Populus trichocarp 0.986 0.914 0.556 1e-112
224129122422 f-box family protein [Populus trichocarp 0.992 0.888 0.553 1e-111
255588135383 conserved hypothetical protein [Ricinus 0.960 0.947 0.536 3e-98
18398079417 F-box protein [Arabidopsis thaliana] gi| 0.978 0.887 0.492 5e-93
297829344415 F-box family protein [Arabidopsis lyrata 0.976 0.889 0.489 2e-92
449445682375 PREDICTED: F-box protein At3g07870-like 0.965 0.973 0.464 8e-90
255583018410 conserved hypothetical protein [Ricinus 0.978 0.902 0.481 3e-80
255583020263 conserved hypothetical protein [Ricinus 0.671 0.965 0.559 1e-71
255552822401 conserved hypothetical protein [Ricinus 0.962 0.907 0.421 3e-67
>gi|225447272|ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera] gi|147785390|emb|CAN68678.1| hypothetical protein VITISV_041941 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/384 (57%), Positives = 279/384 (72%), Gaps = 9/384 (2%)

Query: 1   MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCD 60
           ME LP++I+LDILSRLPVTSL+ F+ VC+ W   AQ+ LL S    R A+ +PCLILHCD
Sbjct: 27  MERLPRDIILDILSRLPVTSLVQFRFVCRGWRLMAQDSLLASKHLCRTAQYNPCLILHCD 86

Query: 61  YPIRNQLYSFELSSRDEDNQTVHQIRVP---ALPEFDVVGSCKGLLCLCDSSTKNRLYVY 117
           YPIRNQ+   ++S+   D   V ++ +P   ++PEF+VVGSC GLLCL DS  K+ +YV+
Sbjct: 87  YPIRNQISFVDISAESRDKDMVRKLTIPFWASMPEFEVVGSCNGLLCLADSLFKDAVYVH 146

Query: 118 NPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGY--GKS 175
           NPFTR++ +LPKS ++  Q+VVFGFG+HP T  YKVVK+ Y R  +G    +R     +S
Sbjct: 147 NPFTRDFKQLPKSLQYPDQEVVFGFGYHPMTEVYKVVKVVYYRNGYGGFSRFRRITCSQS 206

Query: 176 EVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQF 235
           EVQ+LTLGS  WRSLG+V+Y +   PS+ LVNGRLHW T PR R  +R ++SFD+ADEQF
Sbjct: 207 EVQVLTLGSPTWRSLGKVSYQLDRWPSEALVNGRLHWVTRPR-RYVTRFIVSFDLADEQF 265

Query: 236 RVVEKPD--ELHRIHYDLVNLGGCLSAAVPCSSGK-EIWVMKEYDVKESWIKEYNIGIHV 292
           R + KPD   L R +Y L+ LGGCLSAAV  S+GK E+WVMKEYDVKESWIKE+NIG H+
Sbjct: 266 REIPKPDCGGLSRCNYHLLVLGGCLSAAVHRSNGKLEVWVMKEYDVKESWIKEFNIGAHL 325

Query: 293 PRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLLLH 352
           P+GL+QD+++  R  +       VR+LCLLKNGEILLEYK R LVSYNP    FKDL L 
Sbjct: 326 PKGLKQDVNRPHRIWRNAPKGRGVRLLCLLKNGEILLEYKGRVLVSYNPERGKFKDLTLK 385

Query: 353 GTPNLFEASVHEGSLSWIDSFSDN 376
           G PN F+  VH GSLSWIDS +++
Sbjct: 386 GLPNWFQTFVHVGSLSWIDSNTES 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064862|ref|XP_002301588.1| f-box family protein [Populus trichocarpa] gi|222843314|gb|EEE80861.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224129122|ref|XP_002320506.1| f-box family protein [Populus trichocarpa] gi|222861279|gb|EEE98821.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255588135|ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis] gi|223525141|gb|EEF27869.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|18398079|ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein [Arabidopsis thaliana] gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21 [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1| At3g07870 [Arabidopsis thaliana] gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297829344|ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297328394|gb|EFH58813.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449445682|ref|XP_004140601.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] gi|449519392|ref|XP_004166719.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255583018|ref|XP_002532277.1| conserved hypothetical protein [Ricinus communis] gi|223528011|gb|EEF30092.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255583020|ref|XP_002532278.1| conserved hypothetical protein [Ricinus communis] gi|223528012|gb|EEF30093.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255552822|ref|XP_002517454.1| conserved hypothetical protein [Ricinus communis] gi|223543465|gb|EEF44996.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.976 0.884 0.496 1.7e-91
TAIR|locus:2033739302 AT1G32420 "AT1G32420" [Arabido 0.682 0.854 0.274 1.3e-22
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.899 0.823 0.274 1.3e-20
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.711 0.739 0.276 1.4e-16
TAIR|locus:2119787411 AT4G19940 "AT4G19940" [Arabido 0.711 0.654 0.26 3.2e-16
TAIR|locus:2157834359 AT5G49610 "AT5G49610" [Arabido 0.716 0.754 0.277 5.1e-16
TAIR|locus:2024437382 AT1G09650 "AT1G09650" [Arabido 0.740 0.732 0.266 1.2e-15
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.671 0.594 0.272 3.3e-15
TAIR|locus:2119772431 AT4G19930 "AT4G19930" [Arabido 0.825 0.723 0.256 3.4e-15
TAIR|locus:2141548383 AT4G09190 "AT4G09190" [Arabido 0.701 0.691 0.239 5e-15
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 194/391 (49%), Positives = 257/391 (65%)

Query:     1 MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNT-AQNPLLPSLQFSRMAKNDPCLILHC 59
             +E LP++I+ DI SRLP++S+     VC++W +   Q+  L S   S  +   PCL+LHC
Sbjct:    25 LESLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSS---SSSSPTKPCLLLHC 81

Query:    60 DYPIRNQLYSFELSSRDEDNQTVH-QIR-VPALPEFDVVGSCKGLLCLCDSSTKNRLYVY 117
             D PIRN L+  +LS  ++  +T    +R   ++PEFDVVGSC GLLCL DS   + LY+Y
Sbjct:    82 DSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLYLY 141

Query:   118 NPFTRNYVELPK-STEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHR-YYRGYGK- 174
             NPFT N +ELP+ S ++  Q++VFGFGFH  T +YKV+KI Y R +  N+   YRG G+ 
Sbjct:   142 NPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRI 201

Query:   175 ----SEVQILTLGSQ------EWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRL 224
                 SEVQILTL S+       WRSLG+  Y  ++  S+ LVNGRLH+ T PR   P R 
Sbjct:   202 QYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRK 261

Query:   225 LISFDIADEQFRVVEKPD--ELHRIHYDLVNLGGCLSAAVPCSSGK-EIWVMKEYDVKES 281
              +SFD+ DE+F+ + KPD   L+R ++ LVNL GCL A V  + GK +IWVMK Y VKES
Sbjct:   262 FVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKES 321

Query:   282 WIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNP 341
             W KEY+IG ++P+GL+Q+L +     K   N   VRVLCLL+NGEILLEYK R LV+Y+P
Sbjct:   322 WGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDP 381

Query:   342 RNEMFKDLLLHGTPNLFEASVHEGSLSWIDS 372
             +   FKDLL HG PN F   VH G+LSW D+
Sbjct:   382 KLGKFKDLLFHGLPNWFHTVVHAGTLSWFDT 412
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2033739 AT1G32420 "AT1G32420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024437 AT1G09650 "AT1G09650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119772 AT4G19930 "AT4G19930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141548 AT4G09190 "AT4G09190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SFC7FB135_ARATHNo assigned EC number0.49230.97880.8872yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026022001
SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (555 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 6e-20
pfam1293747 pfam12937, F-box-like, F-box-like 2e-06
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 5e-05
pfam0064648 pfam00646, F-box, F-box domain 1e-04
pfam08268125 pfam08268, FBA_3, F-box associated domain 0.003
pfam07734159 pfam07734, FBA_1, F-box associated 0.004
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 87.0 bits (216), Expect = 6e-20
 Identities = 61/258 (23%), Positives = 95/258 (36%), Gaps = 39/258 (15%)

Query: 96  VGSCKGLLCLCDSSTKNRLYVYNPFTRNYVEL--PKSTEFQTQDVVFGFGFHPTTNKYKV 153
           V  C GL+C    S   RL V+NP T     L  PKS     +   +  G+ P   +YKV
Sbjct: 1   VVPCDGLIC---FSYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKV 57

Query: 154 VKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWC 213
           +                   +SE Q+ TLGS  WR++     H       V +NG L++ 
Sbjct: 58  LCFSD---------RSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYL 108

Query: 214 TWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYD---LVNLGGCLSAAVPCSSGK-- 268
            +     P   ++SFD++ E+F+        +    D   L+N  G L+           
Sbjct: 109 AYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNF 168

Query: 269 EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEIL 328
           ++WV+ +   K+ W K +     VP     DL                 +      GEI+
Sbjct: 169 DLWVLNDAG-KQEWSKLF----TVPIPPLPDL------------VDDNFLSGFTDKGEIV 211

Query: 329 LEYKC---RALVSYNPRN 343
           L  +      +  YN   
Sbjct: 212 LCCEDENPFYIFYYNVGE 229

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain Back     alignment and domain information
>gnl|CDD|219544 pfam07734, FBA_1, F-box associated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.72
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.67
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.47
PHA02713557 hypothetical protein; Provisional 99.17
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.09
PHA03098534 kelch-like protein; Provisional 98.93
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.93
PHA02713557 hypothetical protein; Provisional 98.92
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.91
PLN02153341 epithiospecifier protein 98.87
PLN02193470 nitrile-specifier protein 98.87
PHA02790480 Kelch-like protein; Provisional 98.85
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.8
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.75
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.72
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.69
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.65
PHA02790480 Kelch-like protein; Provisional 98.58
PLN02193470 nitrile-specifier protein 98.54
PHA03098534 kelch-like protein; Provisional 98.53
PLN02153341 epithiospecifier protein 98.43
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.41
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.39
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.18
KOG4693392 consensus Uncharacterized conserved protein, conta 97.74
KOG1230 521 consensus Protein containing repeated kelch motifs 97.67
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.42
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.33
KOG4693392 consensus Uncharacterized conserved protein, conta 97.26
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.08
KOG0379482 consensus Kelch repeat-containing proteins [Genera 97.06
KOG1230 521 consensus Protein containing repeated kelch motifs 96.41
KOG2997366 consensus F-box protein FBX9 [General function pre 96.1
PF1396450 Kelch_6: Kelch motif 95.96
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 94.81
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 94.61
PF1396450 Kelch_6: Kelch motif 94.08
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 94.0
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 92.22
PLN02772 398 guanylate kinase 91.43
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 91.34
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 89.85
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 89.85
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 89.68
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 89.28
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 88.82
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 87.93
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 87.72
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 87.67
smart0061247 Kelch Kelch domain. 86.86
smart0061247 Kelch Kelch domain. 86.57
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 84.74
KOG4341483 consensus F-box protein containing LRR [General fu 83.79
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 82.93
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 82.21
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 82.06
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 82.03
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 81.95
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 80.59
PF1341549 Kelch_3: Galactose oxidase, central domain 80.19
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1.5e-35  Score=260.36  Aligned_cols=220  Identities=25%  Similarity=0.421  Sum_probs=164.1

Q ss_pred             EeeeCceEEEeecCCCceEEEEcccccceeeCCCCCCC--CCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCC
Q 035482           96 VGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEF--QTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYG  173 (378)
Q Consensus        96 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~  173 (378)
                      ++|||||||+...   ..++||||+||+++.||+++..  ......++||||+.+++||||++.......         .
T Consensus         1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---------~   68 (230)
T TIGR01640         1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---------N   68 (230)
T ss_pred             CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---------C
Confidence            4799999999853   7899999999999999875432  111236899999999999999997643111         1


Q ss_pred             ceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEe-EEcCCCccC--cceeE
Q 035482          174 KSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFR-VVEKPDELH--RIHYD  250 (378)
Q Consensus       174 ~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~--~~~~~  250 (378)
                      ...++||++++++||.+...+........+|++||++||++..........|++||+++|+|+ .+++|....  .....
T Consensus        69 ~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        69 QSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             CccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence            268999999999999987433322223349999999999987521112238999999999999 599997432  23468


Q ss_pred             EEEeCCeEEEEEeCCCC-c-eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEE
Q 035482          251 LVNLGGCLSAAVPCSSG-K-EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEIL  328 (378)
Q Consensus       251 l~~~~G~L~~v~~~~~~-~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl  328 (378)
                      |++++|+|+++...... . +||+|++++ +..|+|.++|++.....+.                ....++++.++|+|+
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~-~~~W~k~~~i~~~~~~~~~----------------~~~~~~~~~~~g~I~  211 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVPIPPLPDLV----------------DDNFLSGFTDKGEIV  211 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCC-CCceeEEEEEcCcchhhhh----------------hheeEeEEeeCCEEE
Confidence            99999999999876543 3 999999987 4569999999863111110                114578888999999


Q ss_pred             EEEcC--Ce-EEEEeCCCC
Q 035482          329 LEYKC--RA-LVSYNPRNE  344 (378)
Q Consensus       329 ~~~~~--~~-l~~yd~~t~  344 (378)
                      +...+  +. ++.||++++
T Consensus       212 ~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       212 LCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             EEeCCCCceEEEEEeccCC
Confidence            98764  44 999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 5e-06
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 8e-06
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 2e-04
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 62/443 (13%), Positives = 122/443 (27%), Gaps = 136/443 (30%)

Query: 9   VLDILSRLPVTSLLHFKLVCKAWLNTAQ----NPLLPSLQFSRMAKNDPCLILHCDYPIR 64
            LD+     V   + FK+    WLN         +L  LQ   + + DP      D+   
Sbjct: 167 ALDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSN 222

Query: 65  NQLYSFELSSRDE---------------DNQTVHQIRVPALPEFDVVGSCKGLLCLCDSS 109
            +L    + +                   N  V   +      F++  SCK LL      
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKA--WNAFNL--SCKILLTTRFKQ 276

Query: 110 TKNRLYVYNPFTRNYVELPKS-TEFQTQDVVFGF-------------GFHPTTNKYKVVK 155
             + L        +      + T  + + ++  +               +P       + 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-----RLS 331

Query: 156 IDYCRKTHGNHR--YYRGYGKSEVQ------ILTLGSQEWRSLGQVNYHMLEA------- 200
           I       G      ++     ++       +  L   E+R +    +  L         
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----FDRLSVFPPSAHI 387

Query: 201 PSQVLVNGRLHWCTWPRY----------------RGPSRLLISFDIADEQFRVVEKPDEL 244
           P+ +L    L W    +                 + P    IS  I      +  K +  
Sbjct: 388 PTILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENE 442

Query: 245 HRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKE-----------YN-IGIHV 292
           + +H  +V+                      Y++ +++  +           Y+ IG H+
Sbjct: 443 YALHRSIVD---------------------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 293 PRGLEQDLSQSFR----DSKFFRNRSFVRVLCLLKNGEI--------LLEYKCRALVSYN 340
                 +    FR    D +F   +  +R      N           L  YK   +   +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQLKFYK-PYICDND 538

Query: 341 PRNEMFKDLLLHGTPNLFEASVH 363
           P+ E   + +L   P + E  + 
Sbjct: 539 PKYERLVNAILDFLPKIEENLIC 561
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.4
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.34
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.31
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.25
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.23
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.22
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.14
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.11
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.09
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.08
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.04
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.04
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.98
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.88
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.85
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.82
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.71
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.69
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.58
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.42
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.15
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.97
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.92
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.73
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.56
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.86
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.32
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 94.89
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 90.21
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 90.15
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 89.34
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 89.22
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 88.96
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 87.79
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 87.01
3jro_A 753 Fusion protein of protein transport protein SEC13 86.97
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 86.1
1ri6_A 343 Putative isomerase YBHE; 7-bladed propeller, enzym 83.88
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 82.83
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 82.55
4e54_B435 DNA damage-binding protein 2; beta barrel, double 82.52
3v65_B386 Low-density lipoprotein receptor-related protein; 82.51
3jrp_A 379 Fusion protein of protein transport protein SEC13 82.41
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 80.99
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 80.9
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 80.89
3p5b_L400 Low density lipoprotein receptor variant; B-propel 80.67
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 80.51
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
Probab=99.40  E-value=6.5e-10  Score=100.47  Aligned_cols=250  Identities=10%  Similarity=0.005  Sum_probs=150.9

Q ss_pred             EEEEEeccCCCCcEEEEecCCCCcCCcceeeeccCCCCc-eeEEeeeCceEEEeecC---CCceEEEEcccccceeeCCC
Q 035482           54 CLILHCDYPIRNQLYSFELSSRDEDNQTVHQIRVPALPE-FDVVGSCKGLLCLCDSS---TKNRLYVYNPFTRNYVELPK  129 (378)
Q Consensus        54 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~GLl~~~~~~---~~~~~~V~NP~T~~~~~LP~  129 (378)
                      .++++......+.++.+|....     .|..++....++ ..-.+..+|.|++..+.   ....+.++||.|++|..+|+
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDY-----SWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTT-----EEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCC-----CEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            4555443322455666675422     233332111121 12234567777665431   23578999999999999987


Q ss_pred             CCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCe
Q 035482          130 STEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGR  209 (378)
Q Consensus       130 ~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~  209 (378)
                      .+..+.....+.+       +-+++.+.......        .....+++|+..+++|+.++.+|... ....++.++|.
T Consensus        88 ~p~~r~~~~~~~~-------~~~iyv~GG~~~~~--------~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~  151 (306)
T 3ii7_A           88 PPTPRDSLAACAA-------EGKIYTSGGSEVGN--------SALYLFECYDTRTESWHTKPSMLTQR-CSHGMVEANGL  151 (306)
T ss_dssp             CSSCCBSCEEEEE-------TTEEEEECCBBTTB--------SCCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTE
T ss_pred             CCccccceeEEEE-------CCEEEEECCCCCCC--------cEeeeEEEEeCCCCceEeCCCCcCCc-ceeEEEEECCE
Confidence            6654433222222       12465554432111        12367999999999999998776543 34556788999


Q ss_pred             EEEEeccCCCCC----CcEEEEEECCCceEeEEc-CCCccCcceeEEEEeCCeEEEEEeCCCCc---eEEEEeeCCCCCc
Q 035482          210 LHWCTWPRYRGP----SRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPCSSGK---EIWVMKEYDVKES  281 (378)
Q Consensus       210 lyw~~~~~~~~~----~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~~~~~---~iW~l~~~~~~~~  281 (378)
                      +|.+........    ...+.+||+.+++|+.++ +|.  ......++.++|+|+++.......   ++|+++-.  ...
T Consensus       152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~~  227 (306)
T 3ii7_A          152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE--ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK--LNE  227 (306)
T ss_dssp             EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT--TTE
T ss_pred             EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc--hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC--CCc
Confidence            999987532222    567999999999999985 343  233456777899999886543322   88888752  468


Q ss_pred             eeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEc------CCeEEEEeCCCCcEEEEEE
Q 035482          282 WIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYK------CRALVSYNPRNEMFKDLLL  351 (378)
Q Consensus       282 W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~------~~~l~~yd~~t~~~~~v~~  351 (378)
                      |+..-.+..  ++                   ......  .-++.+++..+      ...+..||+++++|+.+.-
T Consensus       228 W~~~~~~p~--~r-------------------~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~  280 (306)
T 3ii7_A          228 WKMVSPMPW--KG-------------------VTVKCA--AVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSK  280 (306)
T ss_dssp             EEECCCCSC--CB-------------------SCCEEE--EETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCC--Cc-------------------cceeEE--EECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCC
Confidence            987632211  10                   001111  12566766654      1468999999999999863
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 5e-08
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 8e-05
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 2e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 2  EYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLL 40
          + LP E++L I S L +  LL    VCK W   A +  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.22
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.58
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.5
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.5
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.48
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.13
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.08
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.81
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 86.32
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.3e-12  Score=78.31  Aligned_cols=39  Identities=38%  Similarity=0.649  Sum_probs=36.4

Q ss_pred             CCCcHHHHHHHhccCCcccccccccchhhhhhhccCCCc
Q 035482            2 EYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLL   40 (378)
Q Consensus         2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F   40 (378)
                      +.||+|++.+||++||++++.|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999988753
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure