Citrus Sinensis ID: 035490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT
Secondary Structure (PSIPRED)
cccccccccccccccccccEEcEEEEcccccccEEEEEccccccccEEccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccHHccccccEEEccccEEEEEccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEEcccccccEEEEEccccccccccccccHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccHcccccccEEEcccccccccccHHHcccccccEEEccccccc
Coil and Loop (DISEMBL)
shfhdpigfttslnnsinlgqwtgvtcahrhQKVAKLDLRKYQSLRgflspyvgnlsflrhiniadnsfhgeipreignlfsletlmitdnsfsglmptnlsrcsNLIAFHAnnnklageiPEEIGCLFKLQKLSIRRNLLT
Flexible Loop (DISEMBL)
shfhdpigFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGclfklqklsirrnllt
Low Complexity Region (SEG)
SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT
Disordered region (IsUnstruct)
******IGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSI******
Disordered Region (DISOPRED)
SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT
Disordered Region (DISEMBL)
SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT
Disordered Region (DISPRO)
****DPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIR*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9SD62	1025	Putative receptor-like pr	yes	no	0.915	0.126	0.488	4e-23
C0LGT6	1031	LRR receptor-like serine/	no	no	0.922	0.127	0.424	3e-22
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.901	0.126	0.395	4e-20
O49318	1124	Probable leucine-rich rep	no	no	0.845	0.106	0.398	3e-18
Q9FL28	1173	LRR receptor-like serine/	no	no	0.845	0.102	0.370	4e-16
C0LGH8	664	Probable LRR receptor-lik	no	no	0.971	0.207	0.314	2e-15
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.767	0.101	0.4	2e-15
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.880	0.113	0.362	4e-15
O22938	890	Leucine-rich repeat recep	no	no	0.873	0.139	0.349	1e-14
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.690	0.082	0.396	2e-14

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 1/131 (0%)

Query: 12  SLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG 71
           S N+S+ L  WTGV C  +H++V  +DL   + L G +SP+VGNLSFLR +N+ADN FHG
Sbjct: 61  SWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLK-LTGVVSPFVGNLSFLRSLNLADNFFHG 119

Query: 72  EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131
            IP E+GNLF L+ L +++N F G++P  LS CS+L     ++N L   +P E G L KL
Sbjct: 120 AIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKL 179

Query: 132 QKLSIRRNLLT 142
             LS+ RN LT
Sbjct: 180 VLLSLGRNNLT 190

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 1/132 (0%)

Query: 11  TSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFH 70
            S N+S     W GVTC  R ++V  L+L  ++ L G +SP +GNLSFLR +N+ADNSF 
Sbjct: 52  ASWNHSSPFCNWIGVTCGRRRERVISLNLGGFK-LTGVISPSIGNLSFLRLLNLADNSFG 110

Query: 71  GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFK 130
             IP+++G LF L+ L ++ N   G +P++LS CS L     ++N L   +P E+G L K
Sbjct: 111 STIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSK 170

Query: 131 LQKLSIRRNLLT 142
           L  L + +N LT
Sbjct: 171 LAILDLSKNNLT 182

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 11  TSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFH 70
           +S N+S  L  W GVTC  ++++V  L+L + Q L G +SP +GNLSFL  +++ +N F 
Sbjct: 45  SSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQ-LGGVISPSIGNLSFLVSLDLYENFFG 103

Query: 71  GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFK 130
           G IP+E+G L  LE L +  N   G +P  L  CS L+    ++N+L G +P E+G L  
Sbjct: 104 GTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTN 163

Query: 131 LQKLSIRRN 139
           L +L++  N
Sbjct: 164 LVQLNLYGN 172

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 8/128 (6%)

Query: 22  WTGVTCAHRHQK-------VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP 74
           W GV C+ +          V  LDL    +L G +SP +G L  L ++N+A N+  G+IP
Sbjct: 68  WIGVNCSSQGSSSSSNSLVVTSLDLSS-MNLSGIVSPSIGGLVNLVYLNLAYNALTGDIP 126

Query: 75  REIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKL 134
           REIGN   LE + + +N F G +P  +++ S L +F+  NNKL+G +PEEIG L+ L++L
Sbjct: 127 REIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEEL 186

Query: 135 SIRRNLLT 142
               N LT
Sbjct: 187 VAYTNNLT 194

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 4/124 (3%)

Query: 4   HDPIGFTT--SLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRH 61
           +DP+G  +  ++  S+    WTG+TC      V+   L K   L G LSP + NL++L+ 
Sbjct: 43  NDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEK--QLEGVLSPAIANLTYLQV 100

Query: 62  INIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEI 121
           +++  NSF G+IP EIG L  L  L++  N FSG +P+ +    N+      NN L+G++
Sbjct: 101 LDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDV 160

Query: 122 PEEI 125
           PEEI
Sbjct: 161 PEEI 164

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH8|Y1634_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 82/140 (58%), Gaps = 2/140 (1%)

Query: 3   FHDPIGFTTSLNN-SINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRH 61
           + DP+   ++ N+ + +   WTG+ C+     V K+++    S++GFL+P +G +++L+ 
Sbjct: 39  YEDPLLVMSNWNDPNSDPCDWTGIYCSPSKDHVIKINISA-SSIKGFLAPELGQITYLQE 97

Query: 62  INIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEI 121
           + +  N   G IP+EIGNL +L+ L + +N   G +P  +   S ++  +  +N L G++
Sbjct: 98  LILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKL 157

Query: 122 PEEIGCLFKLQKLSIRRNLL 141
           P E+G L  L++L I RN L
Sbjct: 158 PAELGNLKYLRELHIDRNRL 177

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 30  RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMIT 89
           + QK+  L L    SL G + P + N S L   +++ N   G+IP ++G L  LE L ++
Sbjct: 282 KLQKITSLLLWG-NSLSGVIPPEISNCSSLVVFDVSANDLTGDIPGDLGKLVWLEQLQLS 340

Query: 90  DNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
           DN F+G +P  LS CS+LIA   + NKL+G IP +IG L  LQ   +  N
Sbjct: 341 DNMFTGQIPWELSNCSSLIALQLDKNKLSGSIPSQIGNLKSLQSFFLWEN 390

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 2/127 (1%)

Query: 14  NNSINLGQWTGVTCAHRHQKVAKLDLR-KYQSLRGFLSPYVGNLSFLRHINIADNSFHGE 72
           N+S+  G WTGV C++       L L      L G LSP +G L  L+ ++++ N   G+
Sbjct: 54  NDSVPCG-WTGVMCSNYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGK 112

Query: 73  IPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ 132
           IP+EIGN  SLE L + +N F G +P  + +  +L      NN+++G +P EIG L  L 
Sbjct: 113 IPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLS 172

Query: 133 KLSIRRN 139
           +L    N
Sbjct: 173 QLVTYSN 179

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 2/126 (1%)

Query: 14  NNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEI 73
           +N  +   W G+ C   +  V  LDL   Q LRG ++  + +L  L+H++++ N+F+G I
Sbjct: 45  SNGTDYCTWVGLKCGVNNSFVEMLDLSGLQ-LRGNVT-LISDLRSLKHLDLSGNNFNGRI 102

Query: 74  PREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQK 133
           P   GNL  LE L ++ N F G +P    +   L AF+ +NN L GEIP+E+  L +L++
Sbjct: 103 PTSFGNLSELEFLDLSLNRFVGAIPVEFGKLRGLRAFNISNNLLVGEIPDELKVLERLEE 162

Query: 134 LSIRRN 139
             +  N
Sbjct: 163 FQVSGN 168

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 58/101 (57%)

Query: 42  YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNL 101
           Y  L G+L   +GN + L+ + ++DN   GEIPREIG L SL  L +  N F G +P  L
Sbjct: 457 YNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVEL 516

Query: 102 SRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             C++L      +N L G+IP++I  L +LQ L +  N L+
Sbjct: 517 GDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLS 557

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
225455118	1009	PREDICTED: probable LRR receptor-like se	0.971	0.136	0.5	3e-31
147810637	1009	hypothetical protein VITISV_020143 [Viti	0.971	0.136	0.5	3e-31
224113119	1065	predicted protein [Populus trichocarpa]	0.943	0.125	0.488	8e-31
357483211	1018	LRR receptor-like serine/threonine-prote	0.971	0.135	0.503	1e-30
224127492	1022	predicted protein [Populus trichocarpa]	0.943	0.131	0.503	5e-30
359482058	1040	PREDICTED: probable LRR receptor-like se	0.971	0.132	0.496	7e-30
255571869	721	serine-threonine protein kinase, plant-t	0.971	0.191	0.503	7e-30
147853780	1904	hypothetical protein VITISV_030954 [Viti	0.971	0.072	0.496	7e-30
255585471	963	serine-threonine protein kinase, plant-t	0.971	0.143	0.510	1e-29
357516993	1010	Receptor protein kinase-like protein [Me	0.964	0.135	0.5	1e-29

>gi|225455118|ref|XP_002268823.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Vitis vinifera]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 2/140 (1%)

Query: 4   HDPIGFTTSLNNSINLGQWTGVTCAHRH-QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHI 62
            DP+G  +S N+S++  +W+GV C+ RH  +V KL+L  Y  L G LSP++GNL+FLR I
Sbjct: 46  QDPLGMLSSWNDSLHFCRWSGVYCSRRHVHRVTKLNLFSY-GLVGSLSPHIGNLTFLRTI 104

Query: 63  NIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIP 122
            + +NSFHG++P EIG LF L+ L++++NSF G +PTNL+ CS L   +  +NKL G+IP
Sbjct: 105 VLQNNSFHGKVPSEIGGLFRLQVLVLSNNSFEGKVPTNLTYCSELRVLNLIDNKLEGKIP 164

Query: 123 EEIGCLFKLQKLSIRRNLLT 142
           EE+G L KL+ L + RN LT
Sbjct: 165 EELGSLSKLKALGLTRNNLT 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810637|emb|CAN63094.1| hypothetical protein VITISV_020143 [Vitis vinifera]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 100/140 (71%), Gaps = 2/140 (1%)

Query: 4   HDPIGFTTSLNNSINLGQWTGVTCAHRH-QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHI 62
            DP+G  +S N+S++  +W+GV C+ RH  +V KL+L  Y  L G LSP++GNL+FLR I
Sbjct: 46  QDPLGMLSSWNDSLHFCRWSGVYCSRRHVHRVTKLNLFSY-GLVGSLSPHIGNLTFLRTI 104

Query: 63  NIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIP 122
            + +NSFHG++P EIG LF L+ L++++NSF G +PTNL+ CS L   +  +NKL G+IP
Sbjct: 105 VLQNNSFHGKVPSEIGGLFRLQVLVLSNNSFEGKVPTNLTYCSELRVLNLIDNKLEGKIP 164

Query: 123 EEIGCLFKLQKLSIRRNLLT 142
           EE+G L KL+ L + RN LT
Sbjct: 165 EELGSLSKLKALGLXRNNLT 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113119|ref|XP_002316397.1| predicted protein [Populus trichocarpa] gi|222865437|gb|EEF02568.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 5   DPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINI 64
           DP+G  +S N S +  +W+GVTC  +HQ+V +LDL+  + L G LSP+VGN+SFLR +N+
Sbjct: 48  DPLGKLSSWNESTHFCEWSGVTCGKKHQRVVQLDLQSCK-LSGSLSPHVGNMSFLRTLNL 106

Query: 65  ADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEE 124
            +NSF   IP+E+G+LF L+ L++T+NSFSG +P N+SRCSNL++     N L G++P E
Sbjct: 107 ENNSFGQNIPQELGSLFRLQALVLTNNSFSGEIPANISRCSNLLSLELEGNNLTGKLPAE 166

Query: 125 IGCLFKLQKLSIRRN 139
            G L KL+     RN
Sbjct: 167 FGSLSKLKAFYFPRN 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483211|ref|XP_003611892.1| LRR receptor-like serine/threonine-protein kinase FEI [Medicago truncatula] gi|355513227|gb|AES94850.1| LRR receptor-like serine/threonine-protein kinase FEI [Medicago truncatula]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 97/139 (69%), Gaps = 1/139 (0%)

Query: 4   HDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHIN 63
           +DP G   S N+S +  +W G+TC+  HQ+VA+L+L  YQ L G +SP+VGNLSFLR++N
Sbjct: 44  NDPYGILASWNSSTHFCKWYGITCSPMHQRVAELNLEGYQ-LHGLISPHVGNLSFLRNLN 102

Query: 64  IADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE 123
           +A NSF G+IP+++G LF L+ L++ DNS +G +PTNL+ CSNL   +   N L G+IP 
Sbjct: 103 LAHNSFFGKIPQKLGQLFRLQELVLIDNSLTGEIPTNLTSCSNLEFLYLTGNHLIGKIPI 162

Query: 124 EIGCLFKLQKLSIRRNLLT 142
            I  L KLQ L I +N LT
Sbjct: 163 GISSLQKLQVLEISKNNLT 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa]

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 92/135 (68%), Gaps = 1/135 (0%)

Query: 5   DPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINI 64
           DP+G  +S N S    QW+GVTC  RHQ+V +LDL  YQ L G LSP++GNLSFLR +N+
Sbjct: 49  DPLGKLSSWNESSQFCQWSGVTCGRRHQRVVELDLHSYQ-LVGSLSPHIGNLSFLRILNL 107

Query: 65  ADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEE 124
           A+NS    IP+E+G LF LE L++ +N+F G +P N+SRC+NL     +   L G++P E
Sbjct: 108 ANNSLSLYIPQELGRLFRLEELVLRNNTFDGGIPANISRCANLRILDFSRGNLTGKLPAE 167

Query: 125 IGCLFKLQKLSIRRN 139
           +G L KLQ L+I  N
Sbjct: 168 LGLLSKLQVLTIELN 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 1/139 (0%)

Query: 4   HDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHIN 63
            DP+G TTS N+S++   WTGVTC HRHQ+V  L+L     L G LSP +GNL+FL  +N
Sbjct: 53  QDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLH-LVGSLSPSIGNLTFLTGLN 111

Query: 64  IADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE 123
           +  N+FHG+IP+E+G L  L  L +T+NSFSG +P NLSRCSNL+ F    N L G IP 
Sbjct: 112 LELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLIGRIPS 171

Query: 124 EIGCLFKLQKLSIRRNLLT 142
            +G   K+ ++ +  N LT
Sbjct: 172 WLGSYPKVVRMQLHYNNLT 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571869|ref|XP_002526877.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533776|gb|EEF35508.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/139 (50%), Positives = 94/139 (67%), Gaps = 1/139 (0%)

Query: 4   HDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHIN 63
           HDP G   S N+S+N  +W GVTC H+H++V+ L+LR   SL G +SPY+ NL+FLR +N
Sbjct: 32  HDPHGIFDSWNDSVNFCEWRGVTCGHKHRRVSSLNLRGL-SLLGSISPYIRNLTFLRFLN 90

Query: 64  IADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE 123
            A+N FHGEIP+EIG+LF L  L + +NSF G +P N+S CS L   +   N L GEIP+
Sbjct: 91  FANNRFHGEIPQEIGHLFRLRHLNLRNNSFGGEIPGNISYCSKLRIINFEANSLVGEIPD 150

Query: 124 EIGCLFKLQKLSIRRNLLT 142
           ++G L KL  L +  N LT
Sbjct: 151 QLGSLKKLVTLFLGVNNLT 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 1/139 (0%)

Query: 4   HDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHIN 63
            DP+G TTS N+S++   WTGVTC HRHQ+V  L+L     L G LSP +GNL+FL  +N
Sbjct: 84  QDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLH-LVGSLSPSIGNLTFLTGLN 142

Query: 64  IADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE 123
           +  N+FHG+IP+E+G L  L  L +T+NSFSG +P NLSRCSNL+ F    N L G IP 
Sbjct: 143 LELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLVYFRLGFNNLIGRIPS 202

Query: 124 EIGCLFKLQKLSIRRNLLT 142
            +G   K+ ++ +  N LT
Sbjct: 203 WLGSYPKVVRMQLHYNNLT 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 90/139 (64%), Gaps = 1/139 (0%)

Query: 4   HDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHIN 63
           HDP     S N +I+  QW GVTC   H++V  LDL   + + G +SPY+GNLSFLR +N
Sbjct: 53  HDPFQVLRSWNETIHFCQWQGVTCGLLHRRVTVLDLHSLK-ISGSISPYIGNLSFLRALN 111

Query: 64  IADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE 123
           I +NSF  EIP++IG L  LE L + +NS  G +PTN+SRCSNL+      NKL G +PE
Sbjct: 112 IQNNSFGHEIPQQIGYLRRLEELRLNNNSVGGKIPTNISRCSNLVFISLGKNKLEGNVPE 171

Query: 124 EIGCLFKLQKLSIRRNLLT 142
           E+G L  LQ LSI  N LT
Sbjct: 172 ELGVLSNLQVLSIFGNKLT 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516993|ref|XP_003628785.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355522807|gb|AET03261.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 1/138 (0%)

Query: 5   DPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINI 64
           DP    T  N+S N   W GVTC+ RHQ+V  L+L+ Y  L+G + P +GNL+FLR++N+
Sbjct: 51  DPFHILTYWNSSTNFCYWHGVTCSPRHQRVIALNLQGY-GLQGIIPPVIGNLTFLRYVNL 109

Query: 65  ADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEE 124
            +NSF+GEIPRE+G LF LE L +T+N+  G +P  LS CS L       NKL G+IP E
Sbjct: 110 QNNSFYGEIPRELGQLFWLEDLYLTNNTLRGQIPAVLSNCSELKILSLTGNKLVGKIPLE 169

Query: 125 IGCLFKLQKLSIRRNLLT 142
           +G L KL+ LSI  N LT
Sbjct: 170 LGFLTKLEVLSIGMNNLT 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.915	0.126	0.488	2.4e-26
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.915	0.128	0.450	1.7e-22
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.915	0.126	0.427	5.9e-22
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.880	0.123	0.428	1.1e-20
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.901	0.126	0.395	2.1e-19
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.845	0.147	0.409	8.3e-19
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.943	0.119	0.382	2.8e-18
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.845	0.117	0.404	5.2e-18
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.964	0.116	0.354	8.6e-16
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.880	0.197	0.375	1.2e-15

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 64/131 (48%), Positives = 87/131 (66%)

Query:    12 SLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG 71
             S N+S+ L  WTGV C  +H++V  +DL   + L G +SP+VGNLSFLR +N+ADN FHG
Sbjct:    61 SWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLK-LTGVVSPFVGNLSFLRSLNLADNFFHG 119

Query:    72 EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131
              IP E+GNLF L+ L +++N F G++P  LS CS+L     ++N L   +P E G L KL
Sbjct:   120 AIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKL 179

Query:   132 QKLSIRRNLLT 142
               LS+ RN LT
Sbjct:   180 VLLSLGRNNLT 190

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 59/131 (45%), Positives = 80/131 (61%)

Query:    11 TSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFH 70
             +S NNS  L  W  VTC  +H++V  L+L   Q L G +SP +GN+SFL  ++++DN+F 
Sbjct:    45 SSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQ-LGGIVSPSIGNVSFLISLDLSDNAFG 103

Query:    71 GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFK 130
             G IPRE+GNLF LE L +  NS  G +P  LS CS L+     +N L   +P E+G L K
Sbjct:   104 GIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNLDLYSNPLRQGVPSELGSLTK 163

Query:   131 LQKLSIRRNLL 141
             L  L + RN L
Sbjct:   164 LVILDLGRNNL 174

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 5.9e-22, P = 5.9e-22
 Identities = 56/131 (42%), Positives = 81/131 (61%)

Query:    12 SLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG 71
             S N+S     W GVTC  R ++V  L+L  ++ L G +SP +GNLSFLR +N+ADNSF  
Sbjct:    53 SWNHSSPFCNWIGVTCGRRRERVISLNLGGFK-LTGVISPSIGNLSFLRLLNLADNSFGS 111

Query:    72 EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131
              IP+++G LF L+ L ++ N   G +P++LS CS L     ++N L   +P E+G L KL
Sbjct:   112 TIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKL 171

Query:   132 QKLSIRRNLLT 142
               L + +N LT
Sbjct:   172 AILDLSKNNLT 182

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 54/126 (42%), Positives = 77/126 (61%)

Query:    14 NNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEI 73
             NNS  L  W  V C  +H++V +LDL   Q L G +SP +GNLSFL ++++++NSF G I
Sbjct:    48 NNSFPLCSWKWVRCGRKHKRVTRLDLGGLQ-LGGVISPSIGNLSFLIYLDLSNNSFGGTI 106

Query:    74 PREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQK 133
             P+E+GNLF L+ L +  N   G +P +LS CS L+     +N L   +P E+G L KL  
Sbjct:   107 PQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYLDLFSNNLGDGVPSELGSLRKLLY 166

Query:   134 LSIRRN 139
             L +  N
Sbjct:   167 LYLGLN 172

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 51/129 (39%), Positives = 78/129 (60%)

Query:    11 TSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFH 70
             +S N+S  L  W GVTC  ++++V  L+L + Q L G +SP +GNLSFL  +++ +N F 
Sbjct:    45 SSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQ-LGGVISPSIGNLSFLVSLDLYENFFG 103

Query:    71 GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFK 130
             G IP+E+G L  LE L +  N   G +P  L  CS L+    ++N+L G +P E+G L  
Sbjct:   104 GTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTN 163

Query:   131 LQKLSIRRN 139
             L +L++  N
Sbjct:   164 LVQLNLYGN 172

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 237 (88.5 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 50/122 (40%), Positives = 71/122 (58%)

Query:    22 WTGVTCAHRH-QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNL 80
             W GV C  RH  +V KL LR   +L G +SP +GNLSFLR + ++DN   G+IP+E+  L
Sbjct:    67 WVGVVCGRRHPHRVVKLRLRS-SNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRL 125

Query:    81 FSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL 140
               L+ L++  NS SG +P  L   ++L      NN L+G IP  +G L  L  L++  N 
Sbjct:   126 SRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENT 185

Query:   141 LT 142
             L+
Sbjct:   186 LS 187

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 57/149 (38%), Positives = 81/149 (54%)

Query:     8 GFTTSLNNSINLG-------QWTGVTCAHRHQK-------VAKLDLRKYQSLRGFLSPYV 53
             GF  SLN   N          W GV C+ +          V  LDL    +L G +SP +
Sbjct:    47 GFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSS-MNLSGIVSPSI 105

Query:    54 GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
             G L  L ++N+A N+  G+IPREIGN   LE + + +N F G +P  +++ S L +F+  
Sbjct:   106 GGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNIC 165

Query:   114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             NNKL+G +PEEIG L+ L++L    N LT
Sbjct:   166 NNKLSGPLPEEIGDLYNLEELVAYTNNLT 194

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 231 (86.4 bits), Expect = 5.2e-18, P = 5.2e-18
 Identities = 51/126 (40%), Positives = 73/126 (57%)

Query:    22 WTGVTCAHRHQK----VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREI 77
             W GV C  R ++    V KL LR   +L G +SP +GNLSFLR +++ DN   GEIP E+
Sbjct:    65 WVGVVCGRRRRRHPHRVVKLLLRS-SNLSGIISPSLGNLSFLRELDLGDNYLSGEIPPEL 123

Query:    78 GNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFK-LQKLSI 136
               L  L+ L ++DNS  G +P  +  C+ L +   ++N+L G IP EIG   K L  L +
Sbjct:   124 SRLSRLQLLELSDNSIQGSIPAAIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYL 183

Query:   137 RRNLLT 142
              +N L+
Sbjct:   184 YKNGLS 189

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 8.6e-16, P = 8.6e-16
 Identities = 50/141 (35%), Positives = 76/141 (53%)

Query:     4 HDPIGFTT--SLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRH 61
             +DP+G  +  ++  S+    WTG+TC      V+   L K   L G LSP + NL++L+ 
Sbjct:    43 NDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEK--QLEGVLSPAIANLTYLQV 100

Query:    62 INIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEI 121
             +++  NSF G+IP EIG L  L  L++  N FSG +P+ +    N+      NN L+G++
Sbjct:   101 LDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDV 160

Query:   122 PEEIGCLFKLQKLSIRRNLLT 142
             PEEI     L  +    N LT
Sbjct:   161 PEEICKTSSLVLIGFDYNNLT 181

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 48/128 (37%), Positives = 73/128 (57%)

Query:    15 NSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP 74
             NS++   W  V+C   +  V+ LDL   QSL G LSP +GNL++L+ + + +N+  G IP
Sbjct:    59 NSVDPCSWRMVSCTDGY--VSSLDLPS-QSLSGTLSPRIGNLTYLQSVVLQNNAITGPIP 115

Query:    75 REIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKL 134
               IG L  L++L +++NSF+G +P +L    NL     NNN L G  PE +  +  L  +
Sbjct:   116 ETIGRLEKLQSLDLSNNSFTGEIPASLGELKNLNYLRLNNNSLIGTCPESLSKIEGLTLV 175

Query:   135 SIRRNLLT 142
              I  N L+
Sbjct:   176 DISYNNLS 183

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037121001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (1009 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 22  WTGVTCA----HRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREI 77
           W+G  C          +  L L   Q LRGF+   +  L  L+ IN++ NS  G IP  +
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL 462

Query: 78  GNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIG 126
           G++ SLE L ++ NSF+G +P +L + ++L   + N N L+G +P  +G
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 27/166 (16%)

Query: 1   SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQ-----SLRGFLSPYV-- 53
           S  +DP+ + ++ N+S ++  W G+TC +   +V  +DL         S   F  PY+  
Sbjct: 39  SSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQT 97

Query: 54  -----GNLSF------------LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
                  LS             LR++N+++N+F G IPR  G++ +LETL +++N  SG 
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE 155

Query: 97  MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +P ++   S+L       N L G+IP  +  L  L+ L++  N L 
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 5e-12
 Identities = 34/101 (33%), Positives = 56/101 (55%)

Query: 42  YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNL 101
           Y +L G +   +G L+ L H+++  N+  G IP  +GNL +L+ L +  N  SG +P ++
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 102 SRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
                LI+   ++N L+GEIPE +  L  L+ L +  N  T
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 7e-12
 Identities = 32/98 (32%), Positives = 52/98 (53%)

Query: 45  LRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRC 104
           L G +   + NL+ L  + +A N   G+IPRE+G + SL+ + +  N+ SG +P  +   
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 105 SNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           ++L       N L G IP  +G L  LQ L + +N L+
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 37  LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
           LDL  Y +L G +   +GNL  L+++ +  N   G IP  I +L  L +L ++DNS SG 
Sbjct: 241 LDL-VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 97  MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +P  + +  NL   H  +N   G+IP  +  L +LQ L +  N  +
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.9 bits (140), Expect = 9e-11
 Identities = 33/90 (36%), Positives = 48/90 (53%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           +G+ S L+ +++  N   G+IP  + NL SLE L +  N   G +P  L +  +L   + 
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             N L+GEIP EIG L  L  L +  N LT
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 42  YQS-LRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN 100
           YQ+ L G + P + +L  L  ++++DNS  GEIP  +  L +LE L +  N+F+G +P  
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Query: 101 LSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           L+    L      +NK +GEIP+ +G    L  L +  N LT
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 27/84 (32%), Positives = 52/84 (61%)

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
           L +++++ N F G +PR++G+L  L  L +++N  SG +P  LS C  L++   ++N+L+
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 119 GEIPEEIGCLFKLQKLSIRRNLLT 142
           G+IP     +  L +L + +N L+
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 34/90 (37%), Positives = 48/90 (53%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           +G +  L+ I +  N+  GEIP EIG L SL  L +  N+ +G +P++L    NL     
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             NKL+G IP  I  L KL  L +  N L+
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 32  QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDN 91
           QK+  LDL    SL G +   V  L  L  +++  N+F G+IP  + +L  L+ L +  N
Sbjct: 284 QKLISLDLSD-NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Query: 92  SFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEI---GCLFKL 131
            FSG +P NL + +NL     + N L GEIPE +   G LFKL
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 1/112 (0%)

Query: 30  RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMIT 89
             +++  LDL + Q   G +   +G+LS L  + +++N   GEIP E+ +   L +L ++
Sbjct: 473 GSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Query: 90  DNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
            N  SG +P + S    L     + N+L+GEIP+ +G +  L +++I  N L
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 25/123 (20%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNL----------------------- 80
           SL G +   +G    LR + + DNSF GE+P E   L                       
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 81  -FSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
             SL+ L +  N F G +P +      L     + N+ +G +P ++G L +L +L +  N
Sbjct: 451 MPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Query: 140 LLT 142
            L+
Sbjct: 510 KLS 512

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           + +L  L+ + +  N F GEIP+ +G   +L  L ++ N+ +G +P  L    NL     
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            +N L GEIP+ +G    L+++ ++ N  +
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
           L  ++++ N   G+IP     +  L  L ++ N  SG +P NL    +L+  + ++N L 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 119 GEIP 122
           G +P
Sbjct: 585 GSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query: 62  INIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEI 121
           ++++ N+  GEIP  + +  +L  L++  NS  G +P +L  C +L      +N  +GE+
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 122 PEEIGCLFKLQKLSIRRNLLT 142
           P E   L  +  L I  N L 
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQ 441

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
PLN03150	623	hypothetical protein; Provisional	99.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.4
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
PLN03150	623	hypothetical protein; Provisional	99.2
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.17
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.9
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.7
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.62
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.53
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.22
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.64
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.41
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.48
PRK15386	426	type III secretion protein GogB; Provisional	96.33
PRK15386	426	type III secretion protein GogB; Provisional	96.33
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.16
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.88
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.56
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.35
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.07
smart00370	26	LRR Leucine-rich repeats, outliers.	93.01
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.59
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.94
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.74
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.72
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.25
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.58
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=4.3e-18  Score=136.63  Aligned_cols=137  Identities=29%  Similarity=0.569  Sum_probs=96.5

Q ss_pred             ccCCCCCcccCcCCCCCceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc-CCC
Q 035490            3 FHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG-NLF   81 (142)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~   81 (142)
                      +.||...+..|+...++|.|.|++|... .+++.|++++|. +.+..+..+..+++|+.|++++|.+++.+|..+. .+.
T Consensus        41 ~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~-i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~  118 (968)
T PLN00113         41 INDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKN-ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS  118 (968)
T ss_pred             CCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCC-ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC
Confidence            4577778889988889999999999754 689999999988 8888888888888888888888888877776554 566


Q ss_pred             CCcEEEccCccccc----------------------CCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccc
Q 035490           82 SLETLMITDNSFSG----------------------LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus        82 ~L~~l~l~~n~~~~----------------------~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n  139 (142)
                      +|+.+++++|.+.+                      .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|
T Consensus       119 ~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence            66666666665544                      34444455555555555555555455555555555555555555


Q ss_pred             cC
Q 035490          140 LL  141 (142)
Q Consensus       140 ~i  141 (142)
                      .+
T Consensus       199 ~l  200 (968)
T PLN00113        199 QL  200 (968)
T ss_pred             CC
Confidence            43

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=1.2e-15  Score=117.56  Aligned_cols=128  Identities=30%  Similarity=0.551  Sum_probs=110.5

Q ss_pred             cCcCCC---CCceeeeeEecCCC----CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCc
Q 035490           12 SLNNSI---NLGQWTGVTCAHRH----QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLE   84 (142)
Q Consensus        12 ~~~~~~---~~~~~~g~~~~~~~----~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (142)
                      +|....   ..|.|.|+.|....    ..++.|++++|. +.+.+|..+..+++|+.|++++|.+.+.+|..+..++.|+
T Consensus       391 ~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~  469 (623)
T PLN03150        391 GWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE  469 (623)
T ss_pred             CCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            686421   12379999995321    358999999999 9999999999999999999999999999999999999999


Q ss_pred             EEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCC-CCCCEEEccccc
Q 035490           85 TLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCL-FKLQKLSIRRNL  140 (142)
Q Consensus        85 ~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~-~~L~~L~l~~n~  140 (142)
                      .|+++.|.+.+.+|..+..+++|+.|++++|.+++.+|..++.. .++..+++.+|.
T Consensus       470 ~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            99999999999999999999999999999999999999887653 456778887774

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=2.2e-14  Score=115.44  Aligned_cols=110  Identities=31%  Similarity=0.551  Sum_probs=100.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|++++|. +.+..|..+..++.|+.|++++|.+.+.+|..+..+++|+.+++++|.+++.+|..+..+++|+.++
T Consensus       475 ~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  553 (968)
T PLN00113        475 KRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD  553 (968)
T ss_pred             ccceEEECcCCc-cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence            578899999998 8888888888899999999999999999999999999999999999999988999999999999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|++.+.+|..+..+..|+.+++++|.++
T Consensus       554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             CCCCcccccCChhHhcCcccCEEeccCCcce
Confidence            9999999889999999999999999999763

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.40  E-value=9.7e-15  Score=94.63  Aligned_cols=106  Identities=30%  Similarity=0.451  Sum_probs=86.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccc-cCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS-GLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~-~~~p~~~~~l~~L~~l  110 (142)
                      .+++.|++.+|+ ++ .+|..+.++++|+.|++..|.+. ..|..|+.++.|+.+|++.|.+. ..+|+.|..|..|+.+
T Consensus        56 ~nlevln~~nnq-ie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen   56 KNLEVLNLSNNQ-IE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             hhhhhhhcccch-hh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence            667788888887 66 57888888888888888888888 78888888888888888888775 3467777778888888


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++.|.|+ -+|..++.+.+|++|.++.|.+
T Consensus       133 yl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             HhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            88888888 7788899999999999888753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.21  E-value=1.2e-12  Score=84.99  Aligned_cols=106  Identities=22%  Similarity=0.398  Sum_probs=87.8

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|.+++|. ++ .+|+.+..+..|+.|++.+|++. .+|..++.++.|+.+++..|++. .+|.+|+.++.|+.++
T Consensus        33 s~ITrLtLSHNK-l~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNK-LT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCc-ee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            668888888888 66 67888888888999999999888 78888888889999998888887 6788899888999999


Q ss_pred             ccCceeee-cCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +.+|.+.. .+|..|..+..|+.|.++.|.+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndf  139 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDF  139 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence            98888753 4677777777788888887754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=1.7e-11  Score=80.48  Aligned_cols=102  Identities=27%  Similarity=0.427  Sum_probs=34.4

Q ss_pred             cEEEEEcCCCCcceeecCcccc-CccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccc-cCCCCCcEE
Q 035490           33 KVAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNL-SRCSNLIAF  110 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~l  110 (142)
                      ++++|++++|. ++..  ..+. .+.+|+.|++++|.++ .++ .+..++.|+.+++++|.++ .+.+.+ ..+++|+.|
T Consensus        20 ~~~~L~L~~n~-I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQ-ISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             ccccccccccc-cccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            46778888887 6642  2344 4667788888888877 444 4666778888888888887 344433 356778888


Q ss_pred             EccCceeeecCc--hhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIP--EEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++. .+.  ..+..+++|+.|++.+|++
T Consensus        94 ~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   94 YLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             E-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             ECcCCcCC-ChHHhHHHHcCCCcceeeccCCcc
Confidence            88888876 332  3456677788888888775

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=3.6e-11  Score=93.07  Aligned_cols=84  Identities=27%  Similarity=0.522  Sum_probs=79.7

Q ss_pred             cceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEccc
Q 035490           59 LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRR  138 (142)
Q Consensus        59 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~  138 (142)
                      ++.|++++|.+.+.+|..+..+++|+.|+++.|.+.+.+|..+..+++|+.|++++|++++.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67899999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             ccCC
Q 035490          139 NLLT  142 (142)
Q Consensus       139 n~is  142 (142)
                      |.++
T Consensus       500 N~l~  503 (623)
T PLN03150        500 NSLS  503 (623)
T ss_pred             Cccc
Confidence            9764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.17  E-value=2.3e-12  Score=96.78  Aligned_cols=109  Identities=19%  Similarity=0.217  Sum_probs=60.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|+++.|+ +...-...+.++.+|+.|++++|.+...-++.|...+.|+.|+++.|+++..-++.|..+..|+.|+
T Consensus       269 ~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  269 EKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             cccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence            446666777766 6654455566666667777777766655556666666666777766666643334455555555555


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++....-..|..+++|+.|||+.|.|
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            555555411111233444444444444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.13  E-value=9.3e-12  Score=89.92  Aligned_cols=107  Identities=31%  Similarity=0.465  Sum_probs=70.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      +++.-|++++|- +. .+|..++++..|+.++++.|.|. .+|..+..+..++++-.+.|++...-++++..|..|.+++
T Consensus       435 ~kLt~L~L~NN~-Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD  511 (565)
T KOG0472|consen  435 QKLTFLDLSNNL-LN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD  511 (565)
T ss_pred             hcceeeecccch-hh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence            334445555543 33 34555555555555555555554 4454444444445544445555534445688899999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +.+|.+. .+|..+++|.+|++|++.+|+|.
T Consensus       512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  512 LQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999999 88999999999999999999874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=5.4e-10  Score=61.03  Aligned_cols=9  Identities=11%  Similarity=0.623  Sum_probs=3.3

Q ss_pred             eeeeccCcc
Q 035490           61 HINIADNSF   69 (142)
Q Consensus        61 ~L~l~~n~l   69 (142)
                      +|++++|.+
T Consensus         5 ~L~l~~n~l   13 (61)
T PF13855_consen    5 SLDLSNNKL   13 (61)
T ss_dssp             EEEETSSTE
T ss_pred             EEECCCCCC
Confidence            333333333

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=1.1e-09  Score=59.85  Aligned_cols=61  Identities=23%  Similarity=0.373  Sum_probs=53.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCccc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSF   93 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~   93 (142)
                      ++++.|++++|. +....+..|..+++|++|++++|.+....+..+..+++|+.+++++|++
T Consensus         1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            468999999999 9977667888999999999999999966667888999999999998864

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.96  E-value=6.3e-10  Score=83.96  Aligned_cols=107  Identities=25%  Similarity=0.334  Sum_probs=64.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ...+.|++++|. +...-+..|..++.|+++.+.+|.++ .+|.......+++.|++..|.|+..-.+.+..++.|+.++
T Consensus        78 ~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            345668888887 77666666677777777777777777 6665444444566666666666544444555556666666


Q ss_pred             ccCceeeecCchh-hhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEE-IGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~-~~~~~~L~~L~l~~n~i  141 (142)
                      ++.|.++ .+|.. |..-.+++.|+|++|.|
T Consensus       156 LSrN~is-~i~~~sfp~~~ni~~L~La~N~I  185 (873)
T KOG4194|consen  156 LSRNLIS-EIPKPSFPAKVNIKKLNLASNRI  185 (873)
T ss_pred             hhhchhh-cccCCCCCCCCCceEEeeccccc
Confidence            6666665 43322 22223455555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=2.7e-11  Score=94.73  Aligned_cols=104  Identities=24%  Similarity=0.335  Sum_probs=73.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++|+.|++++|. +.......+.++..|++|++++|+++ .+|..+..+..|+++.+.+|.+. ..| .+..++.|+.+|
T Consensus       383 ~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  383 KHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             cceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            667888888887 66433345666777788888888887 77777777777888877777776 556 566778888888


Q ss_pred             ccCceeeec-CchhhhCCCCCCEEEccccc
Q 035490          112 ANNNKLAGE-IPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus       112 l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~  140 (142)
                      ++.|.++.. +|. -...++|++||++||.
T Consensus       459 lS~N~L~~~~l~~-~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPE-ALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cccchhhhhhhhh-hCCCcccceeeccCCc
Confidence            888877622 222 2223678888888874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=6.1e-11  Score=83.23  Aligned_cols=126  Identities=19%  Similarity=0.213  Sum_probs=90.0

Q ss_pred             cccCcCCC-CCceeeeeEecCCC----CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCc
Q 035490           10 TTSLNNSI-NLGQWTGVTCAHRH----QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLE   84 (142)
Q Consensus        10 ~~~~~~~~-~~~~~~g~~~~~~~----~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (142)
                      +..|++-+ -.-+++.+.|....    +.++.|++++|. +..  -..+..+++|++||+++|.++ .+...=..+.+..
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            45566532 23344556665433    778888888888 663  234777888888888888887 5554445678888


Q ss_pred             EEEccCcccccCCCccccCCCCCcEEEccCceeeecCc--hhhhCCCCCCEEEcccccCC
Q 035490           85 TLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIP--EEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        85 ~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~is  142 (142)
                      ++.++.|.+..  -.++..+.+|..|++.+|+|+ .+-  ..++.+++|+++.+.+|+|+
T Consensus       356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeehhhhhHhh--hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence            88888888863  256777888999999999987 432  35788899999999998874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.95  E-value=1.2e-10  Score=91.19  Aligned_cols=106  Identities=24%  Similarity=0.394  Sum_probs=96.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCC-hhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP-REIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      +.++.|.+.+|. +++...+.+.++++|+.|++++|.+. ..| ..+.++..|+.|++++|+++ .+|..+..+..|++|
T Consensus       359 ~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  359 AALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             HHHHHHHHhcCc-ccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            668999999999 99998889999999999999999998 666 45678899999999999999 689999999999999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ...+|++. .+| .+..++.|+.+|+++|.++
T Consensus       436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            99999999 788 7888999999999999874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.91  E-value=5.9e-11  Score=90.37  Aligned_cols=89  Identities=33%  Similarity=0.531  Sum_probs=55.6

Q ss_pred             cCccccCccccceeeeccCccee-eCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhC
Q 035490           49 LSPYVGNLSFLRHINIADNSFHG-EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGC  127 (142)
Q Consensus        49 ~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~  127 (142)
                      +|..+..++.|+.|.+.+|+++- -+|..++.+..|+.+.+++|.+. ..|+++..+..|+.|.+..|++. ++|+.+.-
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl  360 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL  360 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh
Confidence            44444555555555555555432 24555555555555555555555 55677777777777777777776 67777777


Q ss_pred             CCCCCEEEcccc
Q 035490          128 LFKLQKLSIRRN  139 (142)
Q Consensus       128 ~~~L~~L~l~~n  139 (142)
                      ++-|+.||++.|
T Consensus       361 L~~l~vLDlreN  372 (1255)
T KOG0444|consen  361 LPDLKVLDLREN  372 (1255)
T ss_pred             cCCcceeeccCC
Confidence            777777777766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.90  E-value=1e-10  Score=84.25  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=95.5

Q ss_pred             CceeeeeEecCCC--CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccC-ccccc
Q 035490           19 LGQWTGVTCAHRH--QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITD-NSFSG   95 (142)
Q Consensus        19 ~~~~~g~~~~~~~--~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~-n~~~~   95 (142)
                      .|.-.|++-++..  .+.+++.+..|. ++.+.+..|..+.+|+.||+++|.++...|+.|..++.+..+-+.+ |+|+.
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            4444444433332  778999999999 8877777899999999999999999977889999999888776555 89984


Q ss_pred             CCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           96 LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        96 ~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      .-...|.++.+++.|.+.-|++.....+.+..++++..|.+..|.+
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence            4335688888899998888888866666788888888888777754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=3.1e-09  Score=69.84  Aligned_cols=100  Identities=25%  Similarity=0.301  Sum_probs=51.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhh-cCCCCCcEEEccCcccccCC-CccccCCCCCcE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLM-PTNLSRCSNLIA  109 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~  109 (142)
                      .+++.|++++|. +...  +.+..++.|+.|++++|.++ .+.+.+ ..+++|+.+++++|++...- -..+..+++|+.
T Consensus        42 ~~L~~L~Ls~N~-I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   42 DKLEVLDLSNNQ-ITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             TT--EEE-TTS---S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             cCCCEEECCCCC-Cccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            579999999999 8853  35778899999999999999 565444 46899999999999997421 245777899999


Q ss_pred             EEccCceeeecCch----hhhCCCCCCEEEc
Q 035490          110 FHANNNKLAGEIPE----EIGCLFKLQKLSI  136 (142)
Q Consensus       110 l~l~~n~~~~~~p~----~~~~~~~L~~L~l  136 (142)
                      |++.+|.++ ..+.    .+..+|+|+.||-
T Consensus       118 L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  118 LSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred             eeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence            999999998 4332    4677899999874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.88  E-value=2.6e-10  Score=86.95  Aligned_cols=105  Identities=21%  Similarity=0.337  Sum_probs=65.9

Q ss_pred             cEEEEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCcc-ccCCCCCcEE
Q 035490           33 KVAKLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAF  110 (142)
Q Consensus        33 ~l~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~-~~~l~~L~~l  110 (142)
                      .++.+.++.|+ +. ..+|+.+..+.-|+.||+++|++. ..|..+-...++..++++.|+|. .+|.. +-+++.|-.|
T Consensus        79 ~LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   79 RLRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhHHHhhhccc-cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            34455555555 33 335666666666666677777666 66666666666666677776666 34543 4456666667


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++.|++. .+|.....+..|+.|++++|++
T Consensus       156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             ccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            77777776 6666666666777777777764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=6.3e-10  Score=78.23  Aligned_cols=106  Identities=18%  Similarity=0.263  Sum_probs=82.6

Q ss_pred             CCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCc
Q 035490           29 HRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI  108 (142)
Q Consensus        29 ~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~  108 (142)
                      +.++.++++++++|. ++ .+..+..-.+.++.|++++|.+. .+. .+..+++|+.+|+++|.+. .+-+.-..+.+++
T Consensus       281 dTWq~LtelDLS~N~-I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  281 DTWQELTELDLSGNL-IT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             chHhhhhhccccccc-hh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            445778889999998 66 45566666788899999999988 443 3778889999999999887 5555555677888


Q ss_pred             EEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          109 AFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       109 ~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      .|.++.|.+. .+ ..++.+.+|..||+++|.|
T Consensus       356 tL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  356 TLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             eeehhhhhHh-hh-hhhHhhhhheeccccccch
Confidence            9999999887 54 4577788899999999986

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.76  E-value=2.2e-10  Score=82.94  Aligned_cols=59  Identities=27%  Similarity=0.414  Sum_probs=30.4

Q ss_pred             CCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEccccc
Q 035490           79 NLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus        79 ~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      .+.++..+|+.+|+++ ..|.++.-+.+|..+++++|.++ .+|..++++ .|+.|.+.||+
T Consensus       250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc
Confidence            3444555555555555 44555544555555555555555 444455554 45555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.70  E-value=5.6e-09  Score=74.40  Aligned_cols=12  Identities=50%  Similarity=0.576  Sum_probs=5.1

Q ss_pred             CCcEEEccCcee
Q 035490          106 NLIAFHANNNKL  117 (142)
Q Consensus       106 ~L~~l~l~~n~~  117 (142)
                      .|+.+++++|.+
T Consensus       194 ~L~~L~L~~n~i  205 (319)
T cd00116         194 NLEVLDLNNNGL  205 (319)
T ss_pred             CCCEEeccCCcc
Confidence            444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.69  E-value=4.1e-08  Score=77.51  Aligned_cols=76  Identities=22%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcc
Q 035490           58 FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIR  137 (142)
Q Consensus        58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~  137 (142)
                      .|+.|++++|.++ .+|..   ..+|+.+++++|.++ .+|...   ..|+.|++++|+++ .+|..+..+++|+.++++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            3555555555555 34322   245666777777766 345432   35677888888888 788888889999999999


Q ss_pred             cccCC
Q 035490          138 RNLLT  142 (142)
Q Consensus       138 ~n~is  142 (142)
                      +|+|+
T Consensus       454 ~N~Ls  458 (788)
T PRK15387        454 GNPLS  458 (788)
T ss_pred             CCCCC
Confidence            99875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.65  E-value=1.1e-08  Score=72.92  Aligned_cols=109  Identities=20%  Similarity=0.298  Sum_probs=75.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccc---cceeeeccCcceee----CChhhcCC-CCCcEEEccCcccccC----CCc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSF---LRHINIADNSFHGE----IPREIGNL-FSLETLMITDNSFSGL----MPT   99 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~---L~~L~l~~n~l~~~----~~~~~~~l-~~L~~l~l~~n~~~~~----~p~   99 (142)
                      ++++.|++++|. +.+..+..+..+..   |++|++++|.+++.    +...+..+ ++|+.++++.|.+++.    ++.
T Consensus        81 ~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            678899998888 76555555545544   89999998887732    22344556 7889999998888732    233


Q ss_pred             cccCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490          100 NLSRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       100 ~~~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      .+..+.+|+.++++.|.+++.    ++..+..+++|+.|++++|.+
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            455667899999998888732    223344456788888887765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.65  E-value=1.2e-09  Score=82.09  Aligned_cols=102  Identities=26%  Similarity=0.417  Sum_probs=63.6

Q ss_pred             EEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490           34 VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN  113 (142)
Q Consensus        34 l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~  113 (142)
                      |+.|.+++|. ++ .+|..+..+.+|.+||.++|.+. .+|..++.+.+|+.+.+..|.+. .+|..+.. -.|..|+++
T Consensus       145 Lkvli~sNNk-l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfS  219 (722)
T KOG0532|consen  145 LKVLIVSNNK-LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFS  219 (722)
T ss_pred             ceeEEEecCc-cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeecc
Confidence            4444445554 33 35555555555666666666665 55556666666666666666665 45655553 346777777


Q ss_pred             CceeeecCchhhhCCCCCCEEEcccccC
Q 035490          114 NNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      .|++. .+|-.|..|..|++|.|.+|++
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCC
Confidence            77777 6777777777777777777765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.62  E-value=8.1e-09  Score=77.71  Aligned_cols=104  Identities=28%  Similarity=0.458  Sum_probs=90.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ..++.++++.|+ +. .+|..+..++ |+.|.+++|+++ .+|+.++.+.+|..++.+.|.+. .+|..+..+.+|+.+.
T Consensus       121 ~~lt~l~ls~Nq-lS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  121 EALTFLDLSSNQ-LS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN  195 (722)
T ss_pred             hHHHHhhhccch-hh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence            568888899998 66 5787777777 899999999999 89999998899999999999997 5788899999999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +..|++. .+|+.+..++ |..||+++|+|+
T Consensus       196 vrRn~l~-~lp~El~~Lp-Li~lDfScNkis  224 (722)
T KOG0532|consen  196 VRRNHLE-DLPEELCSLP-LIRLDFSCNKIS  224 (722)
T ss_pred             Hhhhhhh-hCCHHHhCCc-eeeeecccCcee
Confidence            9999999 8888888665 899999999874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.62  E-value=1.1e-07  Score=75.00  Aligned_cols=97  Identities=21%  Similarity=0.353  Sum_probs=57.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      +.++.|++++|. ++ .+|..+.  .+|+.|++++|.++ .+|..+.  .+|+.+++++|.+. .+|..+.  .+|+.|+
T Consensus       199 ~~L~~L~Ls~N~-Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNNE-LK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD  268 (754)
T ss_pred             cCCcEEEecCCC-CC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence            456667777776 66 3444332  35667777777666 5554432  35666666666665 4555443  3566777


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+++ .+|..+.  .+|+.|++++|.|
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L  295 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSI  295 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCcc
Confidence            7777666 5555432  3566777766655

>PLN03210 Resistant to P

Probab=98.62  E-value=1.3e-07  Score=78.07  Aligned_cols=101  Identities=24%  Similarity=0.248  Sum_probs=70.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      +.|+.|++++|. ....+|..+..+++|+.|++++|...+.+|..+ .+++|+.+++++|.....+|..   ..+++.|+
T Consensus       778 ~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~  852 (1153)
T PLN03210        778 PSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN  852 (1153)
T ss_pred             ccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence            468888888887 566788888889999999998876444676554 5677777777776543344432   24567777


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRR  138 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~  138 (142)
                      ++.|.++ .+|..+..+++|+.|++.+
T Consensus       853 Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        853 LSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             CCCCCCc-cChHHHhcCCCCCEEECCC
Confidence            7777776 6666666677777777665

syringae 6; Provisional

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.57  E-value=1.2e-09  Score=68.61  Aligned_cols=104  Identities=26%  Similarity=0.287  Sum_probs=63.2

Q ss_pred             CcEEEEEcCCCCccee--ecCccccCccccceeeeccCcceeeCChhhcCC-CCCcEEEccCcccccCCCccccCCCCCc
Q 035490           32 QKVAKLDLRKYQSLRG--FLSPYVGNLSFLRHINIADNSFHGEIPREIGNL-FSLETLMITDNSFSGLMPTNLSRCSNLI  108 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~l~l~~n~~~~~~p~~~~~l~~L~  108 (142)
                      +.+..+++++++ +..  ..+-.+....+|+..++++|.+. ..|+.+... +..++++++.|.++ .+|..+..++.|+
T Consensus        27 kE~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            556666666665 431  11122333445666677777776 556555433 36677777777776 5676677777777


Q ss_pred             EEEccCceeeecCchhhhCCCCCCEEEcccc
Q 035490          109 AFHANNNKLAGEIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       109 ~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n  139 (142)
                      .+++..|.+. ..|+.+..+.++..|+...|
T Consensus       104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             hcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence            7777777776 55666665666666665554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.53  E-value=3.3e-08  Score=71.63  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=69.1

Q ss_pred             cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490           52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL  131 (142)
Q Consensus        52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L  131 (142)
                      .|..+++|++|++++|++++.-+..|..+..++.+.+..|++...--..|.++..|++|++.+|+|+..-|..|..+-.|
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            46778888888888888886666777788888888888888875444567777888888888888885556667777778


Q ss_pred             CEEEcccccC
Q 035490          132 QKLSIRRNLL  141 (142)
Q Consensus       132 ~~L~l~~n~i  141 (142)
                      ..|.+-.|++
T Consensus       349 ~~l~l~~Np~  358 (498)
T KOG4237|consen  349 STLNLLSNPF  358 (498)
T ss_pred             eeeehccCcc
Confidence            8888877765

>PLN03210 Resistant to P

Probab=98.51  E-value=3.8e-07  Score=75.44  Aligned_cols=104  Identities=24%  Similarity=0.285  Sum_probs=57.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+|+.|++.++. +. .++..+..+++|+.++++++...+.+| .+..+++|+.+++.+|.....+|..+..+++|+.|+
T Consensus       611 ~~L~~L~L~~s~-l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSK-LE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcc-cc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            456666666665 54 344445556666666666554333444 355566666666666554445666666666666666


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n  139 (142)
                      ++++.....+|..+ .+.+|+.|++++|
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            66543222455433 3445555555543

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.51  E-value=8.9e-08  Score=75.63  Aligned_cols=100  Identities=20%  Similarity=0.358  Sum_probs=62.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++|+.|++++|. ++. +|..+.  +.|+.|++++|.++ .+|..+  .+.|+.|++++|.++ .+|..+.  ..|+.++
T Consensus       325 ~sL~~L~Ls~N~-Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld  394 (754)
T PRK15370        325 PGLKTLEAGENA-LTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQ  394 (754)
T ss_pred             ccceeccccCCc-ccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence            456666666666 553 443332  46777777777776 555544  246777777777776 4565443  3567777


Q ss_pred             ccCceeeecCchhh----hCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEI----GCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~----~~~~~L~~L~l~~n~is  142 (142)
                      +++|++. .+|..+    ...+.+..+++.+|+|+
T Consensus       395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            7777776 555433    23466788888888764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.37  E-value=8.3e-07  Score=70.30  Aligned_cols=100  Identities=24%  Similarity=0.289  Sum_probs=51.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc-----------------CCCCCcEEEccCcccc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG-----------------NLFSLETLMITDNSFS   94 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----------------~l~~L~~l~l~~n~~~   94 (142)
                      .+++.|.+.+|. ++. +|.   .++.|+.|++++|.++ .+|....                 .+..|..+++++|+++
T Consensus       222 ~~L~~L~L~~N~-Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt  295 (788)
T PRK15387        222 AHITTLVIPDNN-LTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT  295 (788)
T ss_pred             cCCCEEEccCCc-CCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc
Confidence            345666666665 553 332   1345666666666665 3432110                 1123444555555554


Q ss_pred             cCCCccccCCCCCcEEEccCceeeecCchhh-------------hCC----CCCCEEEcccccCC
Q 035490           95 GLMPTNLSRCSNLIAFHANNNKLAGEIPEEI-------------GCL----FKLQKLSIRRNLLT  142 (142)
Q Consensus        95 ~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~-------------~~~----~~L~~L~l~~n~is  142 (142)
                       .+|..   .++|+.|++++|+++ .+|...             ..+    .+|+.|++++|+|+
T Consensus       296 -~LP~~---p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        296 -SLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA  355 (788)
T ss_pred             -ccccc---ccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccC
Confidence             33431   256788888888877 443311             111    25677777777663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.32  E-value=7.1e-07  Score=45.34  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=22.1

Q ss_pred             CCcEEEccCcccccCCCccccCCCCCcEEEccCceee
Q 035490           82 SLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA  118 (142)
Q Consensus        82 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~  118 (142)
                      +|+.+++++|+++ .+|..+..+++|+.+++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666677777666 44555666667777777766665

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.27  E-value=5.1e-07  Score=66.49  Aligned_cols=103  Identities=30%  Similarity=0.504  Sum_probs=61.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCcc-ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLS-FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ..++.|.+.+|. +. .+++....+. +|+.|+++.|.+. .+|..+..++.|+.++++.|.+. .+|......+.|+.+
T Consensus       116 ~~l~~L~l~~n~-i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNN-IT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcc-cc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            346666666666 55 3344444442 6677777777766 55555666677777777777766 444444355666677


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccc
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n  139 (142)
                      ++++|++. .+|...+....|+.+.++.|
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            77777776 55554433344666666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=5.1e-08  Score=61.33  Aligned_cols=89  Identities=18%  Similarity=0.286  Sum_probs=73.4

Q ss_pred             CCCcEEEEEcCCCCcceeecCccccC-ccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCc
Q 035490           30 RHQKVAKLDLRKYQSLRGFLSPYVGN-LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI  108 (142)
Q Consensus        30 ~~~~l~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~  108 (142)
                      ...+++.+++++|. |.. .|+.|.. ++.++.+++++|.++ .+|..+..|+.|+.++++.|.+. ..|+.+..+.++.
T Consensus        51 ~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   51 KGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             CCceEEEEecccch-hhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            34779999999999 875 4544444 567899999999999 89989999999999999999998 6688777788888


Q ss_pred             EEEccCceeeecCch
Q 035490          109 AFHANNNKLAGEIPE  123 (142)
Q Consensus       109 ~l~l~~n~~~~~~p~  123 (142)
                      .|+...|... +++-
T Consensus       127 ~Lds~~na~~-eid~  140 (177)
T KOG4579|consen  127 MLDSPENARA-EIDV  140 (177)
T ss_pred             HhcCCCCccc-cCcH
Confidence            8888888876 5553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.24  E-value=2.4e-06  Score=57.06  Aligned_cols=102  Identities=22%  Similarity=0.252  Sum_probs=77.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC--ccccCCCCCcE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP--TNLSRCSNLIA  109 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~  109 (142)
                      .....+++++|. +..  .+.|+.++.|++|.+.+|.++...|.--..++.|..|.+.+|.+. .+.  ..+..+++|+.
T Consensus        42 d~~d~iDLtdNd-l~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDND-LRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccc-hhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence            457788899998 653  345788899999999999999444443345678999999999987 332  45778899999


Q ss_pred             EEccCceeeecCch----hhhCCCCCCEEEccc
Q 035490          110 FHANNNKLAGEIPE----EIGCLFKLQKLSIRR  138 (142)
Q Consensus       110 l~l~~n~~~~~~p~----~~~~~~~L~~L~l~~  138 (142)
                      |.+-+|.++ ....    .+..+++|+.||+..
T Consensus       118 Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchh-cccCceeEEEEecCcceEeehhh
Confidence            999999987 3332    356788999999754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.22  E-value=4e-07  Score=67.05  Aligned_cols=80  Identities=25%  Similarity=0.429  Sum_probs=53.1

Q ss_pred             cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490           33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA  112 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l  112 (142)
                      +++.|++++|. +. .+|..+..++.|+.|+++.|.+. .++...+.++.|+.+++++|.+. .+|........|+.+.+
T Consensus       141 nL~~L~l~~N~-i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNK-IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL  216 (394)
T ss_pred             hcccccccccc-hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence            68888888887 65 34455677788888888888887 66655556677777777777776 44554333334555555


Q ss_pred             cCce
Q 035490          113 NNNK  116 (142)
Q Consensus       113 ~~n~  116 (142)
                      +.|+
T Consensus       217 ~~N~  220 (394)
T COG4886         217 SNNS  220 (394)
T ss_pred             cCCc
Confidence            5553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.22  E-value=6.7e-07  Score=71.87  Aligned_cols=106  Identities=25%  Similarity=0.378  Sum_probs=82.0

Q ss_pred             CcEEEEEcCCCCc-ceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQS-LRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      +++++|-+..|.. +.......|..++.|+.||+++|.--+.+|..++.+.+|+.|+++...++ .+|..+.++.+|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            5677777777741 22222334677899999999988766689999999999999999999998 789999999999999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEccc
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRR  138 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~  138 (142)
                      ++..+.....+|.....+.+|++|.+..
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeec
Confidence            9987765435555566688888888754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=5e-08  Score=75.60  Aligned_cols=103  Identities=20%  Similarity=0.280  Sum_probs=58.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      +.++.|++++|+ +...  +.+..+++|++||+++|.+. .+|.--..-..|+.|.+.+|.++..  .++.++.+|+.|+
T Consensus       187 ~ale~LnLshNk-~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  187 PALESLNLSHNK-FTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHhhhhccchhh-hhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccc
Confidence            556667777776 5532  25566666777777777766 4442111112366666777666522  4455666677777


Q ss_pred             ccCceeeecCc--hhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIP--EEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|-+. .+.  ..+..+..|+.|.|.||++
T Consensus       261 lsyNll~-~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  261 LSYNLLS-EHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhHhhhh-cchhhhHHHHHHHHHHHhhcCCcc
Confidence            7776665 221  1233445566666766654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=5.2e-08  Score=75.54  Aligned_cols=104  Identities=23%  Similarity=0.298  Sum_probs=84.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ..|...+++.|. +. .+..++.-++++++|++++|++.. .. .+..++.|.+||++.|.+. .+|..-..-..|..|.
T Consensus       164 n~L~~a~fsyN~-L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNR-LV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhh-HH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence            557777888888 66 466778888999999999999983 33 6788999999999999998 6676433334599999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +.+|.++ ++ ..+.++.+|..||++.|-|+
T Consensus       239 lrnN~l~-tL-~gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  239 LRNNALT-TL-RGIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             ecccHHH-hh-hhHHhhhhhhccchhHhhhh
Confidence            9999998 55 46788999999999998763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=3.8e-06  Score=42.62  Aligned_cols=36  Identities=33%  Similarity=0.623  Sum_probs=19.2

Q ss_pred             ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccc
Q 035490           58 FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS   94 (142)
Q Consensus        58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~   94 (142)
                      +|+.|++++|.++ .+|+.+..++.|+.+++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3555555555555 44444555556666666555554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.98  E-value=2.3e-06  Score=63.67  Aligned_cols=103  Identities=18%  Similarity=0.333  Sum_probs=58.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ..++.|++.+|. +.+.. ..+..+++|+.|++++|.++ .+. .+..+..|+.|++.+|.+...  ..+..+..|+.++
T Consensus        95 ~~l~~l~l~~n~-i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   95 KSLEALDLYDNK-IEKIE-NLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD  168 (414)
T ss_pred             cceeeeeccccc-hhhcc-cchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence            556666666666 55322 11455666777777777766 222 244555566677777776522  3344466666667


Q ss_pred             ccCceeeecCchh-hhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEE-IGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~-~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++. .+... ...+.+++.+.+.+|.+
T Consensus       169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  169 LSYNRIV-DIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             CCcchhh-hhhhhhhhhccchHHHhccCCch
Confidence            7776666 33221 24445555555555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.84  E-value=7.1e-06  Score=61.06  Aligned_cols=102  Identities=22%  Similarity=0.333  Sum_probs=75.5

Q ss_pred             cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490           33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA  112 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l  112 (142)
                      .++.+.++.|. +.. .-..+..+.+++.+++..|.+. .+...+..+.+|+.++++.|.|+..  .++..++.|+.|++
T Consensus        73 ~l~~l~l~~n~-i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   73 SLKELNLRQNL-IAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             hHHhhccchhh-hhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            34445556665 443 2234677888999999999988 5554467789999999999999843  45666777999999


Q ss_pred             cCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       113 ~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      .+|.++ .+ ..+..+..|+.+++++|.+
T Consensus       148 ~~N~i~-~~-~~~~~l~~L~~l~l~~n~i  174 (414)
T KOG0531|consen  148 SGNLIS-DI-SGLESLKSLKLLDLSYNRI  174 (414)
T ss_pred             ccCcch-hc-cCCccchhhhcccCCcchh
Confidence            999998 54 3455578889999998876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.73  E-value=2.2e-05  Score=63.35  Aligned_cols=84  Identities=21%  Similarity=0.260  Sum_probs=72.7

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .+.++.|++++|. --+.+|..++.+-+|+.|++++..+. .+|..+..+..|.+|++..+.....+|.....+.+|+.|
T Consensus       570 m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  570 LPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL  647 (889)
T ss_pred             CcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence            3889999999988 55689999999999999999999999 999999999999999999877654556667778999999


Q ss_pred             EccCce
Q 035490          111 HANNNK  116 (142)
Q Consensus       111 ~l~~n~  116 (142)
                      .+....
T Consensus       648 ~l~~s~  653 (889)
T KOG4658|consen  648 RLPRSA  653 (889)
T ss_pred             Eeeccc
Confidence            886544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=9.5e-05  Score=49.59  Aligned_cols=102  Identities=24%  Similarity=0.367  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCcceeecCcccc-CccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490           34 VAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA  112 (142)
Q Consensus        34 l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l  112 (142)
                      -+++++++.. ++..  ..++ .+.+...+|++.|.+. .+ +.+..+..|.+|.+.+|.|+...|.--..++.|..|.+
T Consensus        21 e~e~~LR~lk-ip~i--enlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLK-IPVI--ENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccc-ccch--hhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence            3455666665 3311  1111 1345567899999987 33 35778899999999999999666654445678999999


Q ss_pred             cCceeeecCc--hhhhCCCCCCEEEcccccC
Q 035490          113 NNNKLAGEIP--EEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       113 ~~n~~~~~~p--~~~~~~~~L~~L~l~~n~i  141 (142)
                      .+|.+. .+.  ..+..+++|+.|.+-+|.+
T Consensus        96 tnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   96 TNNSIQ-ELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             cCcchh-hhhhcchhccCCccceeeecCCch
Confidence            999987 443  2467788999999988875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=7e-06  Score=60.47  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             CCCcEEEccCcccccCCC--ccccCCCCCcEEEccCceeeec-Cchh-----hhCCCCCCEEEcccccC
Q 035490           81 FSLETLMITDNSFSGLMP--TNLSRCSNLIAFHANNNKLAGE-IPEE-----IGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        81 ~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~n~~~~~-~p~~-----~~~~~~L~~L~l~~n~i  141 (142)
                      ..|+.|++++|.+-.. +  .....++.|..++++.+.+... .|..     ...+++|+.|++..|+|
T Consensus       246 ~~L~~LdLs~N~li~~-~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  246 QTLQELDLSNNNLIDF-DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hHHhhccccCCccccc-ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            3445555555554321 2  2234455555555555555411 1211     12345677777777665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=2e-05  Score=58.12  Aligned_cols=107  Identities=17%  Similarity=0.265  Sum_probs=50.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCC--hhhcCCCCCcEEEccCcccccC-CCcc-----ccC
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP--REIGNLFSLETLMITDNSFSGL-MPTN-----LSR  103 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~l~~n~~~~~-~p~~-----~~~  103 (142)
                      +.++.|++..|. ....-..+...+..|+.||+++|.+. ..+  .....++.|..++++.+++... .|+.     ...
T Consensus       222 Psl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  222 PSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             CcHHHhhhhccc-ccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            445555555553 11111122233455666666666655 222  2334555666666666665421 1221     223


Q ss_pred             CCCCcEEEccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490          104 CSNLIAFHANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       104 l~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i  141 (142)
                      .++|+.|++..|++. .++.  .+..+.+|+.|...+|.+
T Consensus       300 f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  300 FPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccceeeecccCccc-cccccchhhccchhhhhhcccccc
Confidence            456667777766664 3332  222334555555545443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=6.1e-05  Score=52.06  Aligned_cols=101  Identities=18%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccC--cceeeCChhhcCCCCCcEEEccCcccccC-CCccccCCCCCc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADN--SFHGEIPREIGNLFSLETLMITDNSFSGL-MPTNLSRCSNLI  108 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~l~l~~n~~~~~-~p~~~~~l~~L~  108 (142)
                      ..++.+++.+.. ++.  -..+..+++|++|.++.|  .+.+.++--...+++|+++.++.|++... .-..+..+.+|.
T Consensus        43 ~~le~ls~~n~g-ltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   43 VELELLSVINVG-LTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cchhhhhhhccc-eee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            445555555554 332  123455677777788777  44444443344457778888887777621 012344455666


Q ss_pred             EEEccCceeeec--Cc-hhhhCCCCCCEEE
Q 035490          109 AFHANNNKLAGE--IP-EEIGCLFKLQKLS  135 (142)
Q Consensus       109 ~l~l~~n~~~~~--~p-~~~~~~~~L~~L~  135 (142)
                      .|++..+..+..  .. ..|.-+++|++||
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            666666555421  11 1233445666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=4.8e-05  Score=60.05  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             CcEEEEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCccccc-CCCccccCCCCCcE
Q 035490           32 QKVAKLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG-LMPTNLSRCSNLIA  109 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~-~~p~~~~~l~~L~~  109 (142)
                      +.|++|.+.+-. +. +....-..++++|..||+++..++ .+ .+++.+.+|+.|.+.+=.+.. ..-..+..+++|++
T Consensus       148 PsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  148 PSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             cccceEEecCce-ecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            455566555544 32 112223345566666666666665 22 455566666666554444331 11123455677777


Q ss_pred             EEccCceeeecCch-------hhhCCCCCCEEEcccccC
Q 035490          110 FHANNNKLAGEIPE-------EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       110 l~l~~n~~~~~~p~-------~~~~~~~L~~L~l~~n~i  141 (142)
                      ||++..... ..+.       .-..++.|+.||.++..+
T Consensus       225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             eeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence            777765543 1121       112357777777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.41  E-value=8.9e-05  Score=58.58  Aligned_cols=105  Identities=24%  Similarity=0.320  Sum_probs=62.5

Q ss_pred             CcEEEEEcCCCCcceeecCccccC-ccccceeeeccCcceeeC-ChhhcCCCCCcEEEccCcccccCCCccccCCCCCcE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGN-LSFLRHINIADNSFHGEI-PREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIA  109 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~  109 (142)
                      .+|+.|++++...+...++..++. +|.|+.|.+.+-.+.... ..-....++|..||+++..++..  .+++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            567777777766454445544444 577777777665554221 12233567777777777777633  56667777777


Q ss_pred             EEccCceeeecCc--hhhhCCCCCCEEEcccc
Q 035490          110 FHANNNKLAGEIP--EEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       110 l~l~~n~~~~~~p--~~~~~~~~L~~L~l~~n  139 (142)
                      |.+.+=.|. ...  ..+..+++|+.||++..
T Consensus       200 L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  200 LSMRNLEFE-SYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HhccCCCCC-chhhHHHHhcccCCCeeecccc
Confidence            766654554 211  23456777777777653

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.25  E-value=0.00016  Score=36.38  Aligned_cols=26  Identities=42%  Similarity=0.806  Sum_probs=18.2

Q ss_pred             cc-CCCCCcccCcCC--CCCceeeeeEec
Q 035490            3 FH-DPIGFTTSLNNS--INLGQWTGVTCA   28 (142)
Q Consensus         3 ~~-~~~~~~~~~~~~--~~~~~~~g~~~~   28 (142)
                      +. ||.+++.+|+..  +++|.|.|++|.
T Consensus        15 l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen   15 LNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             TT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cccccCcccccCCCcCCCCCeeeccEEeC
Confidence            45 677889999987  799999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.24  E-value=6e-05  Score=54.18  Aligned_cols=108  Identities=15%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             CcEEEEEcCCCCcceeecCcc----ccCccccceeeeccCcceeeCC-------------hhhcCCCCCcEEEccCcccc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPY----VGNLSFLRHINIADNSFHGEIP-------------REIGNLFSLETLMITDNSFS   94 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~l~l~~n~~~   94 (142)
                      ++|+.|++++|. |....++.    +.+...|++|.+.+|.+...--             .....-+.|+.+...+|++.
T Consensus        92 ~~L~~ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CceeEeeccccc-cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            578999999988 66433322    3445667888888887652110             11223345666666666654


Q ss_pred             cC----CCccccCCCCCcEEEccCceeee----cCchhhhCCCCCCEEEccccc
Q 035490           95 GL----MPTNLSRCSNLIAFHANNNKLAG----EIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus        95 ~~----~p~~~~~l~~L~~l~l~~n~~~~----~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      ..    +...+...+.|+.+.+.+|.|..    .+...+..++.|+.||++.|-
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt  224 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT  224 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence            22    11233344555555555555431    112234455556666665553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.08  E-value=6.3e-05  Score=54.08  Aligned_cols=109  Identities=16%  Similarity=0.237  Sum_probs=63.9

Q ss_pred             CcEEEEEcCCCCcceee----cCccccCccccceeeeccCccee----eCChhhcCCCCCcEEEccCcccccCCCccc--
Q 035490           32 QKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFHG----EIPREIGNLFSLETLMITDNSFSGLMPTNL--  101 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~--  101 (142)
                      +.++.+.+.+|. +...    +-..+...++|+.||+..|.|+.    .+...++.+++|+.+++.++.+...-...+  
T Consensus       185 ~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  185 PTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             cccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            456666666665 4311    22335556777777777777763    233455666777777777777764322211  


Q ss_pred             ---cCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490          102 ---SRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       102 ---~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i  141 (142)
                         ...++|+.+.+.+|.++..    +.......+.|..|++.+|.+
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence               1246777777777777531    112234456777777777765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.81  E-value=0.00066  Score=47.06  Aligned_cols=104  Identities=20%  Similarity=0.258  Sum_probs=62.2

Q ss_pred             EEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCc--ccccCCCccccCCCCCcEEE
Q 035490           34 VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDN--SFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        34 l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n--~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++.+.+..+....+.+..-...+..|+.+.+.+..++ .+. .+..|+.|+.+.++.|  .+.+-++-....+++|++++
T Consensus        20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN   97 (260)
T ss_pred             hhhhhcchhhhcCCCcccccccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence            4444444433222233333444566677777776666 332 4557788888888888  55544444445568889999


Q ss_pred             ccCceeeecCc--hhhhCCCCCCEEEccccc
Q 035490          112 ANNNKLAGEIP--EEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus       112 l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~  140 (142)
                      ++.|++. .+-  ..+..+.+|..|+++.+.
T Consensus        98 ls~Nki~-~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   98 LSGNKIK-DLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             ecCCccc-cccccchhhhhcchhhhhcccCC
Confidence            9988876 221  123445567777777664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.00074  Score=48.13  Aligned_cols=83  Identities=22%  Similarity=0.214  Sum_probs=37.8

Q ss_pred             cccceeeeccCccee--eCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCc-hhhhCCCCCCE
Q 035490           57 SFLRHINIADNSFHG--EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIP-EEIGCLFKLQK  133 (142)
Q Consensus        57 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p-~~~~~~~~L~~  133 (142)
                      ..++.+|+.+|.+++  .+-..+..|+.|++++++.|.+...+...-....+|+.+.+.+..+.+.-. ..+..+++++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            445556666666552  122233455666666666665542221110123355556555554432211 12334455555


Q ss_pred             EEcccc
Q 035490          134 LSIRRN  139 (142)
Q Consensus       134 L~l~~n  139 (142)
                      |.++.|
T Consensus       151 lHmS~N  156 (418)
T KOG2982|consen  151 LHMSDN  156 (418)
T ss_pred             hhhccc
Confidence            555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.48  E-value=0.0017  Score=27.65  Aligned_cols=18  Identities=22%  Similarity=0.564  Sum_probs=10.8

Q ss_pred             cceeeeccCcceeeCChhh
Q 035490           59 LRHINIADNSFHGEIPREI   77 (142)
Q Consensus        59 L~~L~l~~n~l~~~~~~~~   77 (142)
                      |++|++++|.++ .+|+.+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            566666666666 555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.33  E-value=0.011  Score=44.13  Aligned_cols=12  Identities=8%  Similarity=0.008  Sum_probs=6.0

Q ss_pred             CCcEEEccCcee
Q 035490          106 NLIAFHANNNKL  117 (142)
Q Consensus       106 ~L~~l~l~~n~~  117 (142)
                      +|+.|++.++..
T Consensus       157 SLk~L~Is~c~~  168 (426)
T PRK15386        157 SLKTLSLTGCSN  168 (426)
T ss_pred             cccEEEecCCCc
Confidence            455555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.33  E-value=0.013  Score=43.88  Aligned_cols=53  Identities=19%  Similarity=0.237  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDN   91 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n   91 (142)
                      .+++.|++++|. ++. +| .  -...|++|.++++.--..+|..+  ..+|+.|.+..|
T Consensus        52 ~~l~~L~Is~c~-L~s-LP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCD-IES-LP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCC-Ccc-cC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            456777777776 552 33 1  12346777776533222445433  245666666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.00059  Score=48.63  Aligned_cols=83  Identities=20%  Similarity=0.341  Sum_probs=58.5

Q ss_pred             CcEEEEEcCCCCcceee--cCccccCccccceeeeccCcceeeCChhh-cCCCCCcEEEccCcccccCC-CccccCCCCC
Q 035490           32 QKVAKLDLRKYQSLRGF--LSPYVGNLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLM-PTNLSRCSNL  107 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~~~~~~-p~~~~~l~~L  107 (142)
                      .+++++++.+|. +.+.  +..-+.+|++|+.|+++.|.+...+. .+ ....+|+.+-+.+..+.... ...+..++.+
T Consensus        71 ~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            668899999998 7743  33446789999999999999884432 23 35667888888877765432 2345567777


Q ss_pred             cEEEccCce
Q 035490          108 IAFHANNNK  116 (142)
Q Consensus       108 ~~l~l~~n~  116 (142)
                      +.+.++.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            777777773

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=0.0005  Score=48.53  Aligned_cols=98  Identities=18%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC--ccccCCCCCcE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP--TNLSRCSNLIA  109 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~  109 (142)
                      .+++.|++-++. +.++-  -...|+.|+.|.++-|+++ .+. .+..++.|+.+++..|.|.. +.  ..++++++|+.
T Consensus        19 ~~vkKLNcwg~~-L~DIs--ic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGCG-LDDIS--ICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCCC-ccHHH--HHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence            345666666666 55321  1344666777777777776 322 34556666777777776652 22  23556677777


Q ss_pred             EEccCceeeecCch-----hhhCCCCCCEEE
Q 035490          110 FHANNNKLAGEIPE-----EIGCLFKLQKLS  135 (142)
Q Consensus       110 l~l~~n~~~~~~p~-----~~~~~~~L~~L~  135 (142)
                      |-|..|...+.-+.     .+.-+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            76666665544332     234455666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.56  E-value=0.029  Score=39.84  Aligned_cols=38  Identities=16%  Similarity=0.296  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCcceeecCcc----ccCccccceeeeccCcce
Q 035490           32 QKVAKLDLRKYQSLRGFLSPY----VGNLSFLRHINIADNSFH   70 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~----l~~l~~L~~L~l~~n~l~   70 (142)
                      ++++.+++++|. |....|+.    +..-..|.+|.+++|.+.
T Consensus        92 p~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          92 PRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             Ccceeeeccccc-cCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            455555555555 44333322    233344555555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.16  E-value=0.18  Score=30.85  Aligned_cols=100  Identities=18%  Similarity=0.308  Sum_probs=49.8

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.+.+.. . +.......+.....|+.+.+..+ +...-...+....+++.+.+.. .+...-...+..+..++.+.
T Consensus        12 ~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            4677777774 3 45444556677777888888764 5533344566666788888865 33322234566678888888


Q ss_pred             ccCceeeecCc-hhhhCCCCCCEEEccc
Q 035490          112 ANNNKLAGEIP-EEIGCLFKLQKLSIRR  138 (142)
Q Consensus       112 l~~n~~~~~~p-~~~~~~~~L~~L~l~~  138 (142)
                      +..+ +. .++ ..+... .++.+.+..
T Consensus        88 ~~~~-~~-~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   88 IPSN-IT-EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred             cCcc-cc-EEchhhhcCC-CceEEEECC
Confidence            7654 43 222 335554 666666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.91  E-value=0.016  Score=22.93  Aligned_cols=13  Identities=23%  Similarity=0.557  Sum_probs=5.4

Q ss_pred             ccceeeeccCcce
Q 035490           58 FLRHINIADNSFH   70 (142)
Q Consensus        58 ~L~~L~l~~n~l~   70 (142)
                      +|+.|++++|.++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3555555555544

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.0013  Score=46.95  Aligned_cols=45  Identities=13%  Similarity=0.166  Sum_probs=31.2

Q ss_pred             ecCCCCcEEEEEcCCCCcceee-cCccccCccccceeeeccCccee
Q 035490           27 CAHRHQKVAKLDLRKYQSLRGF-LSPYVGNLSFLRHINIADNSFHG   71 (142)
Q Consensus        27 ~~~~~~~l~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~   71 (142)
                      |.+++.++++|+++.+.+++.. +.--+.++..|..|++++|.+..
T Consensus       229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~  274 (419)
T KOG2120|consen  229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT  274 (419)
T ss_pred             HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc
Confidence            5566688999999888766632 22235667778888888887653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.64  E-value=0.0011  Score=46.89  Aligned_cols=78  Identities=19%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             CCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCC--hhhcCCCCCcEEEccCcccccCCCc-----ccc
Q 035490           30 RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP--REIGNLFSLETLMITDNSFSGLMPT-----NLS  102 (142)
Q Consensus        30 ~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~l~~n~~~~~~p~-----~~~  102 (142)
                      +++.++.|.++-|. ++..-|  +..++.|++|++..|.+. .+.  ..+..+++|+.|.+..|...+..+.     .+.
T Consensus        39 kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             hcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            33777777777777 664322  455677778888888776 333  3456777888888877777655443     233


Q ss_pred             CCCCCcEEE
Q 035490          103 RCSNLIAFH  111 (142)
Q Consensus       103 ~l~~L~~l~  111 (142)
                      .+++|+.|+
T Consensus       115 ~LPnLkKLD  123 (388)
T KOG2123|consen  115 VLPNLKKLD  123 (388)
T ss_pred             Hcccchhcc
Confidence            456666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.56  E-value=0.00093  Score=47.68  Aligned_cols=85  Identities=21%  Similarity=0.222  Sum_probs=42.5

Q ss_pred             CcEEEEEcCCCCcceee-cCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcc-cccC-CCccccCCCCCc
Q 035490           32 QKVAKLDLRKYQSLRGF-LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNS-FSGL-MPTNLSRCSNLI  108 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~~-~p~~~~~l~~L~  108 (142)
                      .+++.|+++... ++.. +..-+....+|+.|.+.++.+.+.+-..+..-..|+.++++.+. ++.. +.-.+..+..|.
T Consensus       185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            346666666655 4421 12223445556666666666665555555555566666655433 2211 111234455555


Q ss_pred             EEEccCcee
Q 035490          109 AFHANNNKL  117 (142)
Q Consensus       109 ~l~l~~n~~  117 (142)
                      .|+++.+.+
T Consensus       264 ~LNlsWc~l  272 (419)
T KOG2120|consen  264 ELNLSWCFL  272 (419)
T ss_pred             hcCchHhhc
Confidence            555554433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.35  E-value=0.001  Score=45.91  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             ecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCC
Q 035490           27 CAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSN  106 (142)
Q Consensus        27 ~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~  106 (142)
                      -+...++.+.|++++|+ +. .+...+..+..+..++++.|.+. -.|.+++.+..+..+++..|..+ ..|..++..+.
T Consensus        37 ei~~~kr~tvld~~s~r-~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNR-LV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhccceeeeehhhhhH-HH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            33344788999999988 44 35566677788888999988887 78888888888888888888887 67888888999


Q ss_pred             CcEEEccCceee
Q 035490          107 LIAFHANNNKLA  118 (142)
Q Consensus       107 L~~l~l~~n~~~  118 (142)
                      ++.++...|.|.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999988888876

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.27  E-value=0.002  Score=44.50  Aligned_cols=87  Identities=10%  Similarity=0.195  Sum_probs=62.6

Q ss_pred             cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490           52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL  131 (142)
Q Consensus        52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L  131 (142)
                      .+..+...+.||++.|.+- ..-..++.++.+..++++.|.+. .+|..++....++.+++..|..+ ..|..++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3455566778888888776 34445666777778888888887 66777777777777777777777 667777777777


Q ss_pred             CEEEcccccC
Q 035490          132 QKLSIRRNLL  141 (142)
Q Consensus       132 ~~L~l~~n~i  141 (142)
                      +.+++.+|.+
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            7777766643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.07  E-value=0.21  Score=35.62  Aligned_cols=67  Identities=21%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             ccccCccccceeeeccCcceeeCChh----hcCCCCCcEEEccCcccccCCCc-cc-------------cCCCCCcEEEc
Q 035490           51 PYVGNLSFLRHINIADNSFHGEIPRE----IGNLFSLETLMITDNSFSGLMPT-NL-------------SRCSNLIAFHA  112 (142)
Q Consensus        51 ~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~l~l~~n~~~~~~p~-~~-------------~~l~~L~~l~l  112 (142)
                      +.+..+++|+.++++.|.|....|+.    ++....|.++.+.+|.+. .+.+ -+             ...+.|+.+..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            34566788999999999988666644    445678999999999876 2221 11             12467888888


Q ss_pred             cCceee
Q 035490          113 NNNKLA  118 (142)
Q Consensus       113 ~~n~~~  118 (142)
                      ..|++.
T Consensus       165 grNRle  170 (388)
T COG5238         165 GRNRLE  170 (388)
T ss_pred             ccchhc
Confidence            888775

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.01  E-value=0.086  Score=22.99  Aligned_cols=14  Identities=21%  Similarity=0.555  Sum_probs=7.5

Q ss_pred             cccceeeeccCcce
Q 035490           57 SFLRHINIADNSFH   70 (142)
Q Consensus        57 ~~L~~L~l~~n~l~   70 (142)
                      ++|+.|++++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.01  E-value=0.086  Score=22.99  Aligned_cols=14  Identities=21%  Similarity=0.555  Sum_probs=7.5

Q ss_pred             cccceeeeccCcce
Q 035490           57 SFLRHINIADNSFH   70 (142)
Q Consensus        57 ~~L~~L~l~~n~l~   70 (142)
                      ++|+.|++++|.+.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.59  E-value=1.3  Score=26.91  Aligned_cols=85  Identities=19%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490           52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL  131 (142)
Q Consensus        52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L  131 (142)
                      .|....+|+.+.+.. .+...-...+.....++.+.+..+ +...-...+..+..++.+.+.. .+...-...+..+.++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            455566788888874 455344456777778999998875 5533345677887899999865 3331223356667888


Q ss_pred             CEEEcccc
Q 035490          132 QKLSIRRN  139 (142)
Q Consensus       132 ~~L~l~~n  139 (142)
                      +.+++..+
T Consensus        84 ~~i~~~~~   91 (129)
T PF13306_consen   84 KNIDIPSN   91 (129)
T ss_dssp             CEEEETTT
T ss_pred             cccccCcc
Confidence            88887654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.94  E-value=0.059  Score=23.08  Aligned_cols=15  Identities=13%  Similarity=0.386  Sum_probs=7.1

Q ss_pred             cccceeeeccCccee
Q 035490           57 SFLRHINIADNSFHG   71 (142)
Q Consensus        57 ~~L~~L~l~~n~l~~   71 (142)
                      ++|++|++++|.+++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345566666665553

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.74  E-value=0.32  Score=21.52  Aligned_cols=13  Identities=23%  Similarity=0.478  Sum_probs=8.6

Q ss_pred             CCCCEEEcccccC
Q 035490          129 FKLQKLSIRRNLL  141 (142)
Q Consensus       129 ~~L~~L~l~~n~i  141 (142)
                      .+|+.|+++.|+|
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            4566777777766

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.72  E-value=0.1  Score=35.30  Aligned_cols=83  Identities=14%  Similarity=0.136  Sum_probs=56.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceee-CChhhc-CCCCCcEEEccCcc-cccCCCccccCCCCCc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE-IPREIG-NLFSLETLMITDNS-FSGLMPTNLSRCSNLI  108 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~l~l~~n~-~~~~~p~~~~~l~~L~  108 (142)
                      -.++.++-+++. +..+--..+..++.++.|.+.++.--+. .-+.++ ..++|+.|+++.|. |+...-..+..+++|+
T Consensus       101 ~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            558888888888 8877777888888888888888774322 111222 35689999998654 5533334455667777


Q ss_pred             EEEccCc
Q 035490          109 AFHANNN  115 (142)
Q Consensus       109 ~l~l~~n  115 (142)
                      .|.+.+-
T Consensus       180 ~L~l~~l  186 (221)
T KOG3864|consen  180 RLHLYDL  186 (221)
T ss_pred             HHHhcCc
Confidence            7776553

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.25  E-value=0.77  Score=20.44  Aligned_cols=12  Identities=33%  Similarity=0.553  Sum_probs=7.8

Q ss_pred             CCCEEEcccccC
Q 035490          130 KLQKLSIRRNLL  141 (142)
Q Consensus       130 ~L~~L~l~~n~i  141 (142)
                      +|+.|++++|.|
T Consensus         3 ~L~~LdL~~N~i   14 (28)
T smart00368        3 SLRELDLSNNKL   14 (28)
T ss_pred             ccCEEECCCCCC
Confidence            566666666665

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.58  E-value=0.7  Score=20.44  Aligned_cols=17  Identities=35%  Similarity=0.684  Sum_probs=12.2

Q ss_pred             CCcEEEccCceeeecCch
Q 035490          106 NLIAFHANNNKLAGEIPE  123 (142)
Q Consensus       106 ~L~~l~l~~n~~~~~~p~  123 (142)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            5677777777777 6664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.27  E-value=0.18  Score=34.21  Aligned_cols=81  Identities=14%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccC-CCcccc-CCCCCcEEEccCc-eeeecCchhhhCCCCCCEE
Q 035490           58 FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-MPTNLS-RCSNLIAFHANNN-KLAGEIPEEIGCLFKLQKL  134 (142)
Q Consensus        58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~-~p~~~~-~l~~L~~l~l~~n-~~~~~~p~~~~~~~~L~~L  134 (142)
                      .++.+|.++..+...--+.+..++.++.+.+.++.-.+- .-+.+. -.++|+.|+++.+ +|+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            367888888887755555666777777777766653211 111111 2478999999965 6773222345666777766


Q ss_pred             Eccc
Q 035490          135 SIRR  138 (142)
Q Consensus       135 ~l~~  138 (142)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-12
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-08

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 27  CAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETL 86
           C +    + +L L+      G + P + N S L  ++++ N   G IP  +G+L  L  L
Sbjct: 386 CQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 87  MITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            +  N   G +P  L     L     + N L GEIP  +     L  +S+  N LT
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 27  CAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETL 86
           C +    + +L L+      G + P + N S L  ++++ N   G IP  +G+L  L  L
Sbjct: 389 CQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 87  MITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            +  N   G +P  L     L     + N L GEIP  +     L  +S+  N LT
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 45  LRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRC 104
           L G + P +  L+ L ++ I   +  G IP  +  + +L TL  + N+ SG +P ++S  
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 105 SNLIAFHANNNKLAGEIPEEIGCLFKL-QKLSIRRNLLT 142
            NL+    + N+++G IP+  G   KL   ++I RN LT
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (273), Expect = 6e-30
 Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 1   SHFHDPIGFTTSLNNSINL--GQWTGVTCAHRHQ--KVAKLDLRKYQ-SLRGFLSPYVGN 55
               +P   + S   + +     W GV C    Q  +V  LDL          +   + N
Sbjct: 16  KDLGNPTTLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN 74

Query: 56  LSFLRHINIAD-NSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
           L +L  + I   N+  G IP  I  L  L  L IT  + SG +P  LS+   L+    + 
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N L+G +P  I  L  L  ++   N ++
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRIS 162

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.9 bits (185), Expect = 3e-17
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
            L G + P   NL+ L  ++++ N   G+     G+  + + + +  NS +  +   +  
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL 242

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             NL      NN++ G +P+ +  L  L  L++  N L 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.3 bits (168), Expect = 1e-14
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
            L G  S   G+    + I++A NS   ++  ++G   +L  L + +N   G +P  L++
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
              L + + + N L GEIP+  G L +    +   N
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 44  SLRGFLSPYVGNLSFL-RHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLS 102
            + G +    G+ S L   + I+ N   G+IP    NL +L  + ++ N   G       
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFG 218

Query: 103 RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              N    H   N LA ++  ++G    L  L +R N + 
Sbjct: 219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             VG    L  +++ +N  +G +P+ +  L  L +L ++ N+  G +P            
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS 296

Query: 111 H-ANNNKLAG 119
             ANN  L G
Sbjct: 297 AYANNKCLCG 306

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.2 bits (235), Expect = 1e-23
 Identities = 38/99 (38%), Positives = 58/99 (58%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
            L G +   +G+LS LR + +  N   GEIP+E+  + +LETL++  N  +G +P+ LS 
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           C+NL     +NN+L GEIP+ IG L  L  L +  N  +
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.5 bits (228), Expect = 1e-22
 Identities = 29/99 (29%), Positives = 43/99 (43%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
              G + P + N S L  ++++ N   G IP  +G+L  L  L +  N   G +P  L  
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              L     + N L GEIP  +     L  +S+  N LT
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 5e-21
 Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 9/147 (6%)

Query: 1   SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLR--KYQSLRGFLSPYVGNLSF 58
               D        +++ N   + GVTC      V  +DL           +S  + +L+ 
Sbjct: 22  DVLPDK-NLLPDWSSNKNPCTFDGVTCRDDK--VTSIDLSSKPLNVGFSAVSSSLLSLTG 78

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPT--NLSRCSNLIAFHANNNK 116
           L  + ++++  +G +        SL +L ++ NS SG + T  +L  CS L   + ++N 
Sbjct: 79  LESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137

Query: 117 LAGEIPEEIGC-LFKLQKLSIRRNLLT 142
           L        G  L  L+ L +  N ++
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSIS 164

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 5e-21
 Identities = 27/99 (27%), Positives = 45/99 (45%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
            L G +   +  +  L  + +  N   GEIP  + N  +L  + +++N  +G +P  + R
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             NL     +NN  +G IP E+G    L  L +  NL  
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 3e-20
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 44  SLRGFLSPYVGN--LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNL 101
           +  G + P +     + L+ + + +N F G+IP  + N   L +L ++ N  SG +P++L
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438

Query: 102 SRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              S L       N L GEIP+E+  +  L+ L +  N LT
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.0 bits (206), Expect = 9e-20
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 37  LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
           LD+    +    + P++G+ S L+H++I+ N   G+  R I     L+ L I+ N F G 
Sbjct: 205 LDVS-SNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262

Query: 97  MPTNLSRCSNLIAFHANNNKLAGEIPEEI-GCLFKLQKLSIRRNLLT 142
           +P       +L       NK  GEIP+ + G    L  L +  N   
Sbjct: 263 IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 9e-18
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAFHA 112
           G    L  ++++ N F+G +P   G+   LE+L ++ N+FSG +P + L +   L     
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 113 NNNKLAGEIPEEIG-CLFKLQKLSIRRNLLT 142
           + N+ +GE+PE +      L  L +  N  +
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLS- 102
            L G  S  +   + L+ +NI+ N F G IP     L SL+ L + +N F+G +P  LS 
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 291

Query: 103 RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            C  L     + N   G +P   G    L+ L++  N  +
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 30/88 (34%), Positives = 45/88 (51%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
            L G +   + N + L  I++++N   GEIP+ IG L +L  L +++NSFSG +P  L  
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKL 131
           C +LI    N N   G IP  +      
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 6e-16
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADN--SFHGEIPREIGNLFSLETLMITDNSFSGLMPTNL 101
            + G    Y+ N    +  + A N   F G    ++  L +     IT   + G      
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 102 SRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
               +++    + N L+G IP+EIG +  L  L++  N ++
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 1e-15
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPRE-IGNLFSLETLMITDNSFSGLMPTNLS 102
              G + P+ G+ S L  + ++ N+F GE+P + +  +  L+ L ++ N FSG +P +L+
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 103 RCS-NLIAFHANNNKLAGEIPEEIG--CLFKLQKLSIRRNLLT 142
             S +L+    ++N  +G I   +       LQ+L ++ N  T
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 37  LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
           + L     L G +  ++G L  L  + +++NSF G IP E+G+  SL  L +  N F+G 
Sbjct: 495 ISLS-NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

Query: 97  MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
           +P  + + S  IA     N +AG+    I      ++     NLL
Sbjct: 554 IPAAMFKQSGKIA----ANFIAGKRYVYIKNDGMKKECHGAGNLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.9 bits (172), Expect = 4e-15
 Identities = 26/99 (26%), Positives = 41/99 (41%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
             +G  S  +  LS     NI    + G       N  S+  L ++ N  SG +P  +  
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              L   +  +N ++G IP+E+G L  L  L +  N L 
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 9e-14
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 50  SPYVGNLSFLRHINIADNSFHGEIPREI---GNLFSLETLMITDNSFSGLMPTNLSRCSN 106
                 L+ L  ++++ NS  G              L+ L I+ N  SG +   +SRC N
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201

Query: 107 LIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           L     ++N  +  IP  +G    LQ L I  N L+
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 23/128 (17%)

Query: 37  LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP--------------------RE 76
           L L    S  G +   +G+   L  +++  N F+G IP                      
Sbjct: 519 LKLS-NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577

Query: 77  IGNLFSLETLMITDN--SFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKL 134
           I N    +      N   F G+    L+R S     +  +    G           +  L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 135 SIRRNLLT 142
            +  N+L+
Sbjct: 638 DMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
           G++ +L  +N+  N   G IP E+G+L  L  L ++ N   G +P  +S  + L     +
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 114 NNKLAGEIPE 123
           NN L+G IPE
Sbjct: 713 NNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN 100
           G+L  L  ++++ N   G IP+ +  L  L  + +++N+ SG +P  
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 4e-15
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 8/131 (6%)

Query: 18  NLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG----EI 73
             G   GV+  + + +V  L L       G +   +G L+ L  + +  +          
Sbjct: 68  MWGAQPGVSL-NSNGRVTGLSLE-GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 74  PREIGNLFSLETLMITDNSFSGLMPTNLSR--CSNLIAFHANNNKLAGEIPEEIGCLFKL 131
           P+ I    S E        +         R   S+LI    N++     I +      K 
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 132 QKLSIRRNLLT 142
            ++    N +T
Sbjct: 186 TQIGQLSNNIT 196

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 14/116 (12%), Positives = 33/116 (28%), Gaps = 9/116 (7%)

Query: 36  KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG 95
           + +  +Y            NL  L  + + +     ++P  +  L  ++ + +  N    
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 96  LM--------PTNLSRCSNLIAFHANNNKLA-GEIPEEIGCLFKLQKLSIRRNLLT 142
                       +      +   +   N L    +   +  + KL  L    N L 
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 48  FLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNL 107
           F+S  V  L+ LR   + ++ F  E   E     + E                     +L
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDL 251

Query: 108 IAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
                 N     ++P  +  L ++Q +++  N   
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 8e-12
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 49  LSPYVGNLSFLRHINIADNSFHGEIPREI--GNLFSLETLMITDNSFSGLMPTNLSRCSN 106
            +    N   L  I++  N     +  +     L  L  + ++ NSFS   PT     S 
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSST 537

Query: 107 LIAFHANN------NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           L  F   N      N+   E PE I     L +L I  N + 
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 53  VGNLSFLRHINIADNSF-HGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111
                 ++ I I  N+     +   +  +  L  L    N   G +P        L + +
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLN 359

Query: 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              N++        G   +++ LS   N L 
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 14/104 (13%)

Query: 53  VGNLSFLRHINIADNSFHG-------EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCS 105
             ++S +  I+ + N            +        ++ ++ +++N  S       S  S
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 106 NLIAFHANNNKLAG-------EIPEEIGCLFKLQKLSIRRNLLT 142
            L + +   N L         +  E     + L  + +R N LT
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
             +  L  +    N   G++P   G+   L +L +  N  + +          +      
Sbjct: 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 114 NNKLAGEIPE--EIGCLFKLQKLSIRRNLLT 142
           +NKL   IP   +   +  +  +    N + 
Sbjct: 386 HNKL-KYIPNIFDAKSVSVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 9/106 (8%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHG-------EIPREIGNLFSLETLMITDNSFSGL 96
            +  F        S L  IN+  N           +      N + L ++ +  N  + L
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

Query: 97  MPT-NLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
                 +    L+    + N    + P +      L+   IR    
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRD 548

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 49  LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-------MPTNL 101
           L P       +  IN+++N               L ++ +  N  + +          N 
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 102 SRCSNLIAFHANNNKLAGEIPEEI--GCLFKLQKLSIRRNLLT 142
                L +     NKL   + ++     L  L  + +  N  +
Sbjct: 485 KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFS 526

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 8/100 (8%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPT-NLSRCSNLIA 109
           P  G+   L  +N+A N          G    +E L    N    +    +    S + A
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 110 FHANNNKLAG-------EIPEEIGCLFKLQKLSIRRNLLT 142
              + N++          +         +  +++  N ++
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 6e-07
 Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 9/97 (9%)

Query: 49  LSPYVGNLSFLRHINI------ADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLS 102
                 N S L+   I        N    E P  I    SL  L I  N    +    + 
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKI- 585

Query: 103 RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
              N+      +N         +    +     +  +
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 41  KYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN 100
           K      ++  Y+        +N  + S  G   +   N    + L    + +      +
Sbjct: 21  KLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVS 76

Query: 101 LSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           L+    +          +G +P+ IG L +L+ L++  +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 36  KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG 95
            LDL  +  LR   S    +   L+ ++++             +L  L TL++T N    
Sbjct: 32  NLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 96  LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           L     S  S+L    A    LA      IG L  L++L++  NL+ 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG-LMPTNLSRCSNLIAFHA 112
            +L  L +++I+              L SLE L +  NSF    +P   +   NL     
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +  +L    P     L  LQ L++  N   
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 5e-12
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEI-PREIGNLFSLETLMITDNSFSGLMPTNLS 102
             R   +     LS L  + +A NSF     P     L +L  L ++      L PT  +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 103 RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             S+L   + ++N           CL  LQ L    N + 
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 2/107 (1%)

Query: 37  LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
           LDL     ++        +LS L  + +  N            L SL+ L+  + + + L
Sbjct: 57  LDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 97  MPTNLSRCSNLIAFHANNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT 142
               +     L   +  +N +   ++PE    L  L+ L +  N + 
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 8e-10
 Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 3/140 (2%)

Query: 5   DPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQ-SLRGFLSPYVGNLSFLRHIN 63
             +   +    +    +            +  LDL +   S +G  S      + L++++
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 64  IADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAFHANNNKLAGEIP 122
           ++ N     +      L  LE L    ++   +   +      NLI    ++        
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 123 EEIGCLFKLQKLSIRRNLLT 142
                L  L+ L +  N   
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQ 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 37  LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
           L +        FL      L  L  ++++        P    +L SL+ L ++ N+F  L
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 97  MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFK-LQKLSIRRNLLT 142
                   ++L     + N +     +E+      L  L++ +N   
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHG-EIPREIGNLFSLETLMITDNSFSGLMPTNLS 102
           +L    +  +G+L  L+ +N+A N     ++P    NL +LE L ++ N    +  T+L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 103 RCSNLIAFHAN----NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
               +   + +     N +    P     + +L KL++R N  +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 12/84 (14%), Positives = 25/84 (29%)

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
            ++++++ N           +   L+ L ++      +        S+L       N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 119 GEIPEEIGCLFKLQKLSIRRNLLT 142
                    L  LQKL      L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLA 113

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 8/135 (5%)

Query: 14  NNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNS----- 68
           NN  +L             +V +L L ++++           L  L ++ I +       
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 69  -FHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGC 127
            +  +I      L ++ +  +   +   +   + S           N K       ++  
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 128 LFKLQKLSIRRNLLT 142
           L +L   S +     
Sbjct: 327 LKRLTFTSNKGGNAF 341

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 72  EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131
           +IP  +    S + L ++ N    L   +      L     +  ++          L  L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 132 QKLSIRRNLLT 142
             L +  N + 
Sbjct: 79  STLILTGNPIQ 89

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 21/99 (21%), Positives = 34/99 (34%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
            LR   +      S L  +++  N+     P     L  L+ L +  N  S L     + 
Sbjct: 36  QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           C+NL   H  +N +             L  L +  N L+
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 36  KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG 95
           +L L    S++   +        L  ++++ N            L +L+ L++++N    
Sbjct: 101 ELHLM-SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 96  LMPTNLS--RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           L    L     S+L     ++N++    P     + +L  L +    L 
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 14  NNSINLGQWTGVTCAH-RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE 72
           N+  +L   T  T     H  +  L+L     +    S     L  L  +++  N    E
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLT-KNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 73  IP-REIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAG--EIPEEIGCLF 129
           +  +E   L ++  + ++ N +  L   + +   +L         L      P     L 
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 130 KLQKLSIRRNLLT 142
            L  L +  N + 
Sbjct: 481 NLTILDLSNNNIA 493

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL--MPTNLSRCSNLIAFH 111
             L  +  I ++ N +          + SL+ LM+   +   +   P+      NL    
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            +NN +A    + +  L KL+ L ++ N L 
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 6e-10
 Identities = 18/89 (20%), Positives = 32/89 (35%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
             L  L+ +N+  N       +      +L  L +  NS   +      +  NLI    +
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +N L+         L  LQ+L +  N + 
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS--------GLMPTNLSRCS 105
             L  L  +++++N+        +  L  LE L +  N+ +        G     L   S
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 106 NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +L   +  +N       E    LF+L+ + +  N L 
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 9/115 (7%)

Query: 36  KLDLRKYQSLRGFLSPYVGNLSFLRHINIADN--------SFHGEIPREIGNLFSLETLM 87
            LDL    ++       +  L  L  +++  N        +  G     +  L  L  L 
Sbjct: 484 ILDLS-NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 88  ITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +  N F  +          L       N L             L+ L++++NL+T
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 14/87 (16%), Positives = 30/87 (34%)

Query: 56  LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNN 115
            + +  +N+  N               L +L +  N+ S L P    +   L   +  +N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 116 KLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +L+    +       L +L +  N + 
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQ 110

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 43  QSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLS 102
            +  G    ++  LS L  +N+  N F         +LF L+ + +  N+ + L  +  +
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 103 RCSNLIAFHANNNKLAGEIPEEIGCLFK-LQKLSIRRNLLT 142
              +L + +   N +     +  G  F+ L +L +R N   
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 12/90 (13%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLF--SLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
             + +R+++++++            L   +L  L ++ N+ + +   + +    L  F  
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             N +       +  LF ++ L+++R+   
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLF--SLETLMITDNSFSGLMPTNL 101
            L          L  L+ + +++N        E+      SL+ L ++ N      P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 102 SRCSNLIAFHANNNKLAGEIPEEIG---CLFKLQKLSIRRNLLT 142
                L     NN +L   + E++        ++ LS+  + L+
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
              + L  +++  NS             +L TL ++ N  S        +  NL     +
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 114 NNKLAGEIPEEIG--CLFKLQKLSIRRNLLT 142
           NNK+     EE+       L+KL +  N + 
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 9/97 (9%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCS--------- 105
             + L  ++++ N+ +         L  LE   +  N+   L   +L             
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 106 NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +      +   L          L  L+ L++  N + 
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 5/94 (5%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLS---RCSNLIAF 110
              S L+ + ++ N      P     +  L  L + +      +   L      +++   
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 111 HANNNKLAGEIPEEIG--CLFKLQKLSIRRNLLT 142
             +N++L+              L  L +  N L 
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 44  SLRGFLSPYVGNLSFLRHIN---------IADNSFHGEIPREIGNLFSLETLMITDNSFS 94
           +++   S  +  L  +R++N         I+  S           L  LE L + DN   
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 95  GLMPTNLSRCSNLIAFHANNNKLAGEIPEEIG----CLFKLQKLSIRRNLLT 142
           G+     +   NL     +N+  +                L  L++ +N ++
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 12/115 (10%)

Query: 39  LRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-- 96
              Y            NL  L  + + +     ++P  + +L  L++L I  N       
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 97  -------MPTNLSRCSNLIAFHANNNKLAGEIPEE--IGCLFKLQKLSIRRNLLT 142
                  +  +      +  F+   N L  E P    +  + KL  L    N + 
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 8e-12
 Identities = 21/164 (12%), Positives = 46/164 (28%), Gaps = 28/164 (17%)

Query: 7   IGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIAD 66
           +  +  L ++IN               +    +    +   F+S  +  L+ L+ I  A+
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 67  NSFHG-------------------EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNL 107
           + F                            NL  L  + + +      +P  L     L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 108 IAFHANNNKLAG---------EIPEEIGCLFKLQKLSIRRNLLT 142
            + +   N+             + ++     K+Q   +  N L 
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 9e-12
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 47  GFLSPYVGNLSFLRHINIADNSFHGEIPREI--GNLFSLETLMITDNSFSGLMPTNLSRC 104
                   N   L  I++  N     +  +     L  L  + ++ N FS   PT     
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNS 775

Query: 105 SNLIAFH------ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           S L AF       A  N++  + P  I     L +L I  N + 
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 10/114 (8%)

Query: 36  KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSF-------HGEIPREIGNLFSLETLMI 88
            + L  Y  ++ F +      S +  I +++N                  N + L T+ +
Sbjct: 677 TVTLS-YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 89  TDNSFSGLMPT-NLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL 141
             N  + L      +    L     + N  +   P +     +L+   IR    
Sbjct: 736 RFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRD 788

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 10/95 (10%), Positives = 29/95 (30%), Gaps = 8/95 (8%)

Query: 55  NLSFLRHINIADNSFHGEIPR--EIGNLFSLETLMITDNSFSGL-----MPTNLSRCSNL 107
               +  +  + N     IP      +++ + ++  + N             +  +  N 
Sbjct: 617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 108 IAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
                + N++     E       +  + +  NL+T
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 12/104 (11%), Positives = 29/104 (27%), Gaps = 10/104 (9%)

Query: 48  FLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-------MPTN 100
             S           + ++ N               + T+++++N  + +          N
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 101 LSRCSNLIAFHANNNKLAGEIPEEIGC--LFKLQKLSIRRNLLT 142
                 L       NKL   + ++     L  L  + +  N  +
Sbjct: 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
             +  L  ++   N          G    L  L +  N    +     +    +     +
Sbjct: 570 QKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 114 NNKLAGEIPE--EIGCLFKLQKLSIRRNLLT 142
           +NKL   IP       ++ +  +    N + 
Sbjct: 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 8e-08
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           + N   +  +++A     G +P  IG L  L+ L    +S +                  
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 113 NNNKLAGEIPEEIGCLF-KLQKLSIRRNLLT 142
             +++     +       +L    + ++ + 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 12/101 (11%)

Query: 54  GNLSFLRHINIADNSFHGEIPR-----EIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI 108
            ++  +  ++ + N    E        +     +  T+ ++ N          +  S + 
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 109 AFHANNNKL-------AGEIPEEIGCLFKLQKLSIRRNLLT 142
               +NN +                  + L  + +R N LT
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 34/170 (20%)

Query: 5   DPIGFTTSLNNSINLGQWTGVTCA--HRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHI 62
           +    + + N +  L  W          + +V  L L      +G +   +G L+ L+ +
Sbjct: 294 NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLA-GFGAKGRVPDAIGQLTELKVL 352

Query: 63  NIADNSFHG--------------------EIPREIGNLF-----SLETLMITDNSFSGL- 96
           +   +S                        I      +F      L    +  ++ +   
Sbjct: 353 SFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412

Query: 97  ----MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
               +  +              N++   I + I  L KLQ +    +  T
Sbjct: 413 EMKPIKKDSRISLKDTQIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFT 461

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 10/89 (11%)

Query: 53  VGNLSFLRHINI------ADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSN 106
             N S L+   I        N    + P  I    SL  L I  N    +    L     
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKL--TPQ 828

Query: 107 LIAFHANNNKL-AGEIPEEIGCLFKLQKL 134
           L      +N   + ++      +     +
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYV 857

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 49  LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI 108
           L   + NL  L+ + I ++     +   I +L  LE L +   +     P      + L 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 109 AFH-ANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
                + + L   +P +I  L +L+KL +R  
Sbjct: 257 RLILKDCSNLL-TLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 49  LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNS---------FSGLMPT 99
           L   +   + L  + +A N     +P  I +L  L  L I              S     
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 100 NLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
                 NL +       +   +P  I  L  L+ L IR + L+
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
              LS L+H+ I       E+P  +     LETL +  N    L P +++  + L     
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSI 157

Query: 113 NNNKLAGEIPEEIG---------CLFKLQKLSIRRNLLT 142
                  E+PE +           L  LQ L +    + 
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 25/107 (23%)

Query: 36  KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG 95
           +LDLR   +LR    P  G  + L+ + + D S    +P +I  L  LE L         
Sbjct: 233 ELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL--------- 282

Query: 96  LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
               +L  C NL             +P  I  L     + +  +L  
Sbjct: 283 ----DLRGCVNL-----------SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 6/115 (5%)

Query: 31  HQKVAKLDLRKYQSLRGFLSPY-VGNLSFLRHINIADNSFHGEIPREIGNL--FSLETLM 87
           H  +++           + S +   N +  +       +        + +        L 
Sbjct: 29  HDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALE 87

Query: 88  ITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +         P    R S+L     +   L  E+P+ +     L+ L++ RN L 
Sbjct: 88  LRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 36  KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG 95
           +L L+   +L   L   +  L+ L  +++        +P  I  L +   +++  +  + 
Sbjct: 257 RLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 96  L 96
           L
Sbjct: 316 L 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 22/89 (24%), Positives = 37/89 (41%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
            N S L+ ++++         +    L  L  L++T N      P + S  ++L    A 
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             KLA      IG L  L+KL++  N + 
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIH 141

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 2/107 (1%)

Query: 37  LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSG 95
           LD+  Y + +         L+ L  + +A NSF       +  N  +L  L ++      
Sbjct: 429 LDIS-YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 96  LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +          L   + ++N L          L+ L  L    N + 
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAFHA 112
            +L  L +++I+  +   +       L SL TL +  NSF     +N  +  +NL     
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +  +L          L +LQ L++  N L 
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 14/106 (13%), Positives = 35/106 (33%)

Query: 37  LDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL 96
           L +         LS    N + L  ++++              L  L+ L ++ N+   L
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 97  MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             ++ ++  +L     + N++             L   ++  N + 
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
             L  L ++ +  N      P     L SLE L+  +   + L    + +   L   +  
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136

Query: 114 NNKLAG-EIPEEIGCLFKLQKLSIRRNLLT 142
           +N +   ++P     L  L  + +  N + 
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 2/96 (2%)

Query: 49  LSPYVGNLSFLRHINIADNSFHGEIPRE-IGNLFSLETLMITDNSFSGLMPTNLSRCSNL 107
           +S     L  L+H++   ++           +L  L  L I+  +            ++L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 108 IAFHANNNKLAGEIPEEI-GCLFKLQKLSIRRNLLT 142
                  N         +      L  L + +  L 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAFHAN 113
             + LRH++++ N     +      L  L+ L    ++   +   +       L+    +
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
                 +       L  L  L +  N   
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR--CSNLIAFH 111
            +L FL+ + +  N   G I  +   L SL  L ++ N+ S     + S    ++L    
Sbjct: 325 LDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            + N     +      L +LQ L  + + L 
Sbjct: 383 LSFNGA-IIMSANFMGLEELQHLDFQHSTLK 412

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 13/86 (15%), Positives = 25/86 (29%)

Query: 57  SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNK 116
           S  ++I+++ N           N   L+ L ++      +         +L       N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 117 LAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +    P     L  L+ L      L 
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLA 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 14/89 (15%), Positives = 30/89 (33%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
             L  L  +++     +        +   L+TL++T N    +  T LS    L      
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              ++      +     L+ L +  N ++
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHIS 142

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL---MPTNLSRCSNLIAF 110
            NL  L+ +N++ +       +    L +L+ L +  N F         +L     L   
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             +   L+         L  +  + +  N LT
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAFHAN 113
           NLS L+ +N++ N               LE L +           +       L   + +
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           ++ L     +    L  LQ L+++ N   
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 12/89 (13%), Positives = 28/89 (31%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
            +   L  + +  N         +    +L+ L       S +    L     L + +  
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +N ++     +     KL+ L  + N + 
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
              S L+ +++       E+P  +  L +L+ L+++ N F  L   + S   +L      
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 114 NNKLAGEIPEE-IGCLFKLQKLSIRRNLLT 142
            N    E+    +  L  L++L +  + + 
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIE 363

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 17/96 (17%), Positives = 30/96 (31%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSR 103
            L       +     L+H+              + N  +LE+L +  N  S +       
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 104 CSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
              L      NN +     E++  L +   LS+  N
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 54  GNLSFLRHINIADNSFHGEIPRE-IGNLFSLETLMITDN--SFSGLMPTNLSRCSNLIAF 110
            N   L H++I  N+   E+    + NL +L  L ++ +    S      L   S+L + 
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           + + N+      E      +L+ L +    L 
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
             L  L  + ++             +L  +  + ++ N  +      LS    +   +  
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLA 531

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +N ++  +P  +  L + + +++R+N L 
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 10/87 (11%), Positives = 21/87 (24%)

Query: 56  LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNN 115
            +    +  + N            L +L  L +T      +          L       N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 116 KLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            L       +     L+ L   +  ++
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGIS 118

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 3/92 (3%)

Query: 54  GNLSFLRHINIADNSFH--GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH 111
            NL  LR ++++ +          ++ NL  L++L ++ N    L       C  L    
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 112 ANNNKLAGEIPEEI-GCLFKLQKLSIRRNLLT 142
               +L  +  +     L  L+ L++  +LL 
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 49  LSPYVGNLSFLRHINIADNSFHGEIPREIGN--LFSLETLMITDNSFSGLMPTNLSRCS- 105
           + P   + +  + +N         I + + N  + SL      D     + P        
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 106 -NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            ++ + +   +           C   LQ+L +    L+
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
           +  IN+  + F             L+ L +T    S L P+ L   S L     + NK  
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFE 314

Query: 119 GEIPEEIGCLFKLQKLSIRRNLL 141
                       L  LSI+ N  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTK 337

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 49  LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNL 107
           L   +  LS L+ + ++ N F         N  SL  L I  N+    + T  L    NL
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 108 IAFHANNNKLA--GEIPEEIGCLFKLQKLSIRRNLLT 142
                +++ +        ++  L  LQ L++  N   
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 9e-09
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
            NLS L  + I  N         + +L  L+ L +  N  S +  + L+  S L +   N
Sbjct: 240 ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN 295

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           NN+L  E  E IG L  L  L + +N +T
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             + NL+ +  +N+  N    ++   + N+  L  L +T++    +  T ++  ++L + 
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSL 182

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             N N++    P  +  L  L   +   N +T
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
                L  +  + +A       I   I  L +LE L +  N  + + P  LS    L   
Sbjct: 38  VTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNL 93

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +   NK+       +  L  L++L +  + ++
Sbjct: 94  YIGTNKI--TDISALQNLTNLRELYLNEDNIS 123

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             V +L+ L+ +N+  N         + NL  L +L + +N         +   +NL   
Sbjct: 259 NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             + N +    P  +  L K+        ++ 
Sbjct: 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             + NL+ L  +++  N      P  + +L SL       N  + +  T ++  + L + 
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI--TPVANMTRLNSL 226

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              NNK+    P  +  L +L  L I  N ++
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             + NL  L ++ I  N         + NL +L  L + +++ S +  + L+  + + + 
Sbjct: 82  SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSL 137

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +   N         +  +  L  L++  + + 
Sbjct: 138 NLGANHN-LSDLSPLSNMTGLNYLTVTESKVK 168

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 36  KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG 95
            LDL  +  LR   S    +   L+ ++++             +L  L TL++T N    
Sbjct: 32  NLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 96  LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           L     S  S+L    A    LA      IG L  L++L++  NL+ 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 32  QKVAKLDLRKYQ-SLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITD 90
             +  LDL +   S +G  S      + L++++++ N     +      L  LE L    
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 91  NSFSGLMPTN-LSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           ++   +   +      NLI    ++             L  L+ L +  N   
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 44  SLRGFLSPYVGNLSFLRHINIADNSF-HGEIPREIGNLFSLETLMITDNSFSGLMPTNLS 102
           +L    +  +G+L  L+ +N+A N     ++P    NL +LE L ++ N    +  T+L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 103 RCSNLIAF----HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
               +         + N +   I        +L KL++R N  +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDS 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG-LMPTNLSRCSNLIAFHAN 113
           +L  L +++I+              L SLE L +  NSF    +P   +   NL     +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             +L    P     L  LQ L++  N L 
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 56  LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNL----IAFH 111
            + L  +++ +N     +P    +L   E L ++ N    L P    R  +     I F 
Sbjct: 159 PTSLEVLSVRNNQL-TFLPELPESL---EALDVSTNLLESL-PAVPVRNHHSEETEIFFR 213

Query: 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              N++   IPE I  L     + +  N L+
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
           +  + I  N+    +P    +L   E L   DN  S L P   +   +L     +NN+L 
Sbjct: 82  ITVLEITQNALI-SLPELPASL---EYLDACDNRLSTL-PELPASLKHL---DVDNNQLT 133

Query: 119 GEIPEEIGCLFKLQKLSIRRNLLT 142
             +PE       L+ ++   N LT
Sbjct: 134 -MLPELPA---LLEYINADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 6/91 (6%)

Query: 56  LSFLRHINIADNSFHGEIPREIGNLFSLETLMIT----DNSFSGLMPTNLSRCSNLIAFH 111
              L  ++++ N     +P         E   I     +N  + + P N+          
Sbjct: 179 PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTII 236

Query: 112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             +N L+  I E +            R   +
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 56  LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNN 115
            S L+ + ++ N     +P     L   + LM++ N  + L P   S    L++     N
Sbjct: 220 PSGLKELIVSGNRL-TSLPVLPSEL---KELMVSGNRLTSL-PMLPS---GLLSLSVYRN 271

Query: 116 KLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +L   +PE +  L     +++  N L+
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 12/88 (13%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
             S L+ ++++DN     +P     L+ L      +N  + L P      S L     + 
Sbjct: 179 LPSGLQELSVSDNQLA-SLPTLPSELYKLWAY---NNRLTSL-PALP---SGLKELIVSG 230

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N+L   +P       +L++L +  N LT
Sbjct: 231 NRL-TSLPVLPS---ELKELMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 9e-06
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
              +N+ ++     +P  +     + TL+I DN+ + L P        L     + N+L 
Sbjct: 42  NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTSL-PALPPELRTL---EVSGNQLT 94

Query: 119 GEIPEEIGCLFKLQKLSIRRNLLT 142
             +P     L +L   S     L 
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLP 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
               LR + ++ N     +P     L  L            L P+ L +           
Sbjct: 79  LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-PSGLCK------LWIFG 130

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N+L   +P        LQ+LS+  N L 
Sbjct: 131 NQLT-SLPVLPP---GLQELSVSDNQLA 154

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 14/89 (15%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
            N +  +   + D+S    +     + ++++ L ++ N  S +   +L+  + L   + +
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +N L      ++  L  L+ L +  N + 
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
            +   ++ ++++ N        ++     LE L ++ N        +L   S L     N
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLN 88

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           NN +     +E+     ++ L    N ++
Sbjct: 89  NNYV-----QELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 54  GNLSFLRHINIADNSFHG-EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           G  S ++++++  N            +  +LE L +  N    +        + L     
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDL 198

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           ++NKLA  +  E      +  +S+R N L 
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 73  IPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ 132
           I     N    +   +TD+S    + +      N+     + N L+     ++    KL+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 133 KLSIRRNLLT 142
            L++  N+L 
Sbjct: 62  LLNLSSNVLY 71

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-MPTNLSRCSNLIAFHA 112
                 ++I +A+N        + G    ++ L +  N    +      +    L   + 
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             N +  ++  ++    KL+ L +  N L 
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
             +   L H+N+  N  + ++  ++     L+TL ++ N  + +        + +     
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISL 221

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            NNKL   I + +     L+   +R N   
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 11/91 (12%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           +     +  ++ A+N+    +    G     + + + +N  + L   +    S +     
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 113 NNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT 142
             N++      E       L+ L+++ N + 
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
           P + NL FL  I   +NS   ++P    +   LE+++  +N    L    L     L   
Sbjct: 189 PELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILEEL--PELQNLPFLTTI 242

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +A+NN L   +P+       L+ L++R N LT
Sbjct: 243 YADNNLLK-TLPDLPP---SLEALNVRDNYLT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
                L  I   +N    E+P E+ NL  L  +   +NS   L P       +L +  A 
Sbjct: 170 DLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL-PDLPL---SLESIVAG 223

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           NN L  E   E+  L  L  +    NLL 
Sbjct: 224 NNIL--EELPELQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
               L  +  + NS   E+P    +L SL        + S L P        L     +N
Sbjct: 89  LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSN 140

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N+L  ++P E+     L+ + +  N L 
Sbjct: 141 NQLE-KLP-ELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
           L ++ +++N    ++P E+ N   L+ + + +NS   L P       +L    A NN+L 
Sbjct: 133 LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKL-PDLP---PSLEFIAAGNNQLE 186

Query: 119 GEIPEEIGCLFKLQKLSIRRNLLT 142
            E+P E+  L  L  +    N L 
Sbjct: 187 -ELP-ELQNLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 48  FLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNL 107
           F++P   + +FL+      ++   E+P E  N+ S        + +    P        +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 108 IAFHANNNKLAG------------EIPEEIGCLFKLQKLSIRRNLLT 142
                 +                  +PE       L+ L    N LT
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLT 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           +  L+ L ++ + +N      P  I NL +L  L +  N+ S +  + +S  + L     
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFF 338

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            NNK+       +  L  +  LS   N ++
Sbjct: 339 YNNKV--SDVSSLANLTNINWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           V  L+ L  IN ++N      P  + NL  L  +++ +N  + +  T L+  +NL     
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTL 119

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
            NN++    P  +  L  L +L +  N ++
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTIS 147

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             +G L+ L  +++  N    +    + +L +L  L + +N  S L    LS  + L   
Sbjct: 215 TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTEL 270

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
               N+++   P  +  L  L  L +  N L 
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLE 300

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           + NL+ L  ++I+ N         +  L +LE+L+ T+N  S +  T L   +NL     
Sbjct: 173 LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSL 228

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N N+L       +  L  L  L +  N ++
Sbjct: 229 NGNQLKD--IGTLASLTNLTDLDLANNQIS 256

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
            L+      +   +    +     +L  + TL         +    +   +NL   + +N
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 77

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N+L    P  +  L KL  + +  N + 
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIA 103

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             + NL+ +  ++   N      P  + NL  +  L + D +++       +  S     
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
                 L    P  I       +  I  NL +
Sbjct: 405 KNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             + NL+ L  + + +N      P  + NL +L  L ++ N+ S +  + LS  ++L   
Sbjct: 106 TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQL 161

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              N        + +  L  L++L I  N ++
Sbjct: 162 SFGNQVT---DLKPLANLTTLERLDISSNKVS 190

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 54  GNLSFLRHINIADNSFHG-EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           G  S ++++++  N            +  +LE L +  N    +        + L     
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDL 198

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           ++NKLA  +  E      +  +S+R N L 
Sbjct: 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 15/88 (17%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
           N +  +   + D+S    +     + ++++ L ++ N  S +   +L+  + L   + ++
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N L  E   ++  L  L+ L +  N + 
Sbjct: 68  NVLY-ETL-DLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-MPTNLSRCSNLIAFHA 112
                 ++I +A+N        + G    ++ L +  N    +      +    L   + 
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             N +  ++  ++    KL+ L +  N L 
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 73  IPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ 132
           I     N    +   +TD+S    + +      N+     + N L+     ++    KL+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 133 KLSIRRNLLT 142
            L++  N+L 
Sbjct: 62  LLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
           +   ++ ++++ N        ++     LE L ++ N        +L   S L     NN
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNN 89

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N +     +E+     ++ L    N ++
Sbjct: 90  NYV-----QELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 11/91 (12%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           +     +  ++ A+N+    +    G     + + + +N  + L   +    S +     
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151

Query: 113 NNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT 142
             N++      E       L+ L+++ N + 
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 55  NLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
            L+ L  + +   +    IP E   +L  L  L +   + + +   +  R   L     +
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           +      +         L  LSI    LT
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
            L  L+ + I+   +   +        +L +L IT  + + +    +     L   + + 
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257

Query: 115 NKLAGEIPEEI-GCLFKLQKLSIRRNLLT 142
           N ++  I   +   L +LQ++ +    L 
Sbjct: 258 NPIS-TIEGSMLHELLRLQEIQLVGGQLA 285

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
               ++ + I +       P  I  L +LE L I     +     NLS  ++L     ++
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRN 139
           +     I  +I  L K+  + +  N
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 53  VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
           +  LS L  + I       +    +  L SL  L I+ ++    + T ++    + +   
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           + N    +I   +  L +L+ L+I+ + + 
Sbjct: 144 SYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 55  NLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
            L  L+ + +        I +E   NL +L  L +  +    L P       +L      
Sbjct: 46  FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105

Query: 114 NNKLAGEI--PEEIGCLFKLQKLSIRRNLLT 142
              L+  +        L  L +L + +N + 
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 35/88 (39%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
            L  L+ +N+A N  +         L +L+ L ++ N    L  +N      +       
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           N +A    +    L KLQ L +R N LT
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 54  GNLSFLRHINIADNSFHGEIPRE-IGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA 112
            NL+ L+ + I +     EI R     L SL  L I   S       +L    ++     
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           + ++ A  +      L  ++ L +R   L 
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLA 209

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLMPTNLSRCSNLIA 109
            ++ N   L  ++++ N    +I       +  LE L I++N    L          L  
Sbjct: 242 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKV 299

Query: 110 FHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              ++N L   +        +L+ L +  N + 
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 54  GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN 113
                L  + +  N+   +    + N   L  + ++ N    +M     +   L   + +
Sbjct: 223 PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
           NN+L   +      +  L+ L +  N L 
Sbjct: 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 37  LDLRKYQSLRGFLSPYV-GNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG 95
           LDL + + L  ++S      LS LR++N+A  +   EIP  +  L  L+ L ++ N  S 
Sbjct: 165 LDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221

Query: 96  LMPTNLSRCSNLIAFHANNNKLAGEIPEE-IGCLFKLQKLSIRRNLLT 142
           + P +     +L       +++   I       L  L ++++  N LT
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 55  NLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH-A 112
            L+ L  + + DN     IP      L  L+ L + +N    +     +R  +L      
Sbjct: 110 GLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168

Query: 113 NNNKLAGEIPEEI-GCLFKLQKLSIRRNLLT 142
              +L+  I E     L  L+ L++    L 
Sbjct: 169 ELKRLS-YISEGAFEGLSNLRYLNLAMCNLR 198

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 55  NLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSF-SGLMPTNLSRCSNLIAFHA 112
           +L  L +++I+           I   L SLE L +  NSF    +P   +   NL     
Sbjct: 124 SLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 113 NNNKLAGEIPEEI-GCLFKLQKLSIRRNLLT 142
           +  +L  ++       L  LQ L++  N   
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF 212

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 76  EIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLS 135
            +  L  +  L ++ N    L P  L+    L    A++N L  E  + +  L +LQ+L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELL 514

Query: 136 IRRNLLT 142
           +  N L 
Sbjct: 515 LCNNRLQ 521

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 32  QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNL---FSLETLMI 88
             V +L L   +S  G +         L  +++ +          + NL     L+ L +
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPKLKKLEL 78

Query: 89  TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKL 134
           ++N   G +     +  NL   + + NKL       +  L KL+ L
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECL 122

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREI-GNLFSLETLMITDNSFSGLMPTNLSRCSNLIA 109
            ++ N   L  ++++ N    +I       +  LE L I++N    L          L  
Sbjct: 248 AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKV 305

Query: 110 FHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
              ++N L   +        +L+ L +  N + 
Sbjct: 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.65
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.6
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.6
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.6
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.6
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.59
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.57
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.56
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.56
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.53
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.53
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.53
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.53
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.53
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.52
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.47
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.46
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.45
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.45
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.41
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.41
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.41
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.41
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.39
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.37
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.35
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.34
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.22
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.21
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.2
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.03
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.02
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.01
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.93
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.18
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.91
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.66
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.47
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.14
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=3.6e-23  Score=146.36  Aligned_cols=137  Identities=28%  Similarity=0.471  Sum_probs=119.6

Q ss_pred             ccCCCCCcccCcCCCCCce--eeeeEecCCC--CcEEEEEcCCCCccee--ecCccccCccccceeeecc-CcceeeCCh
Q 035490            3 FHDPIGFTTSLNNSINLGQ--WTGVTCAHRH--QKVAKLDLRKYQSLRG--FLSPYVGNLSFLRHINIAD-NSFHGEIPR   75 (142)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~--~~l~~L~l~~n~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~   75 (142)
                      +.||. .+.+|..++++|.  |.|++|....  .+++.|++++|. +.+  .+|..+..+++|++|++++ |.+.+.+|.
T Consensus        18 ~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~   95 (313)
T 1ogq_A           18 LGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP   95 (313)
T ss_dssp             TTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG
T ss_pred             cCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCCh
Confidence            34565 6888988888998  9999998654  789999999999 988  8889999999999999994 889888898


Q ss_pred             hhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           76 EIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        76 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      .+..+++|+.++++.|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.|
T Consensus        96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A           96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence            899999999999999999878888888899999999999999877888888888999999988876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=4.2e-20  Score=141.46  Aligned_cols=130  Identities=17%  Similarity=0.297  Sum_probs=117.2

Q ss_pred             cccCcCCCCCcee---eeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccC-------------------
Q 035490           10 TTSLNNSINLGQW---TGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADN-------------------   67 (142)
Q Consensus        10 ~~~~~~~~~~~~~---~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n-------------------   67 (142)
                      ..+|+.+++.|.|   .|++|... .+++.|+++++. +.|.+|+.+..+++|+.|++++|                   
T Consensus        57 ~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~  134 (636)
T 4eco_A           57 GANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS  134 (636)
T ss_dssp             -CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC
T ss_pred             CCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCch
Confidence            4579988999999   99999765 799999999999 99999999999999999999888                   


Q ss_pred             -----------------------------------------------------------cceeeCChhhcCCCCCcEEEc
Q 035490           68 -----------------------------------------------------------SFHGEIPREIGNLFSLETLMI   88 (142)
Q Consensus        68 -----------------------------------------------------------~l~~~~~~~~~~l~~L~~l~l   88 (142)
                                                                                 .+++ +|..++.+++|+.+++
T Consensus       135 ~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~L  213 (636)
T 4eco_A          135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYM  213 (636)
T ss_dssp             HHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEE
T ss_pred             HHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEEC
Confidence                                                                       3444 7888999999999999


Q ss_pred             cCcccccC-----------------CCcccc--CCCCCcEEEccCceeeecCchhhhCCCCCCEEEccccc-CC
Q 035490           89 TDNSFSGL-----------------MPTNLS--RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL-LT  142 (142)
Q Consensus        89 ~~n~~~~~-----------------~p~~~~--~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~-is  142 (142)
                      +.|.+++.                 +|..+.  .+++|+.|++++|.+.+.+|..++.+++|+.|++++|. ++
T Consensus       214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~  287 (636)
T 4eco_A          214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS  287 (636)
T ss_dssp             ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred             cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence            99999974                 899888  99999999999999988899999999999999999997 53

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=1.3e-19  Score=141.31  Aligned_cols=137  Identities=20%  Similarity=0.232  Sum_probs=109.7

Q ss_pred             CCccCCCCCcccCcCCCCCceeeeeEecCCCCcEEEEEcCCCCcceee---cC-----------------------cccc
Q 035490            1 SHFHDPIGFTTSLNNSINLGQWTGVTCAHRHQKVAKLDLRKYQSLRGF---LS-----------------------PYVG   54 (142)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~L~l~~n~~~~~~---~~-----------------------~~l~   54 (142)
                      +++.||. .+.+|+.++++|.|.|++|.  ..+++.|+++++. +.+.   ++                       ..+.
T Consensus        22 ~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~-l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~   97 (768)
T 3rgz_A           22 DVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKP-LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK   97 (768)
T ss_dssp             TTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSC-CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCC
T ss_pred             hhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCC-cCCccCccChhHhccCcccccCCcCCCcCCCchhhc
Confidence            3567888 89999988899999999998  3899999999988 7775   33                       4667


Q ss_pred             CccccceeeeccCcceeeCCh--hhcCCCCCcEEEccCcccccCCCccc-cCCCCCcEEEccCceeeecCchh---hhCC
Q 035490           55 NLSFLRHINIADNSFHGEIPR--EIGNLFSLETLMITDNSFSGLMPTNL-SRCSNLIAFHANNNKLAGEIPEE---IGCL  128 (142)
Q Consensus        55 ~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~l~l~~n~~~~~~p~~---~~~~  128 (142)
                      .+++|++|++++|.+.+.+|.  .++.+++|++++++.|.+.+..|..+ ..+++|++|++++|.+++..+..   +..+
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A           98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC  177 (768)
T ss_dssp             CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred             cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence            788899999999999988887  88889999999999998887766654 67788888888888888666554   5566


Q ss_pred             CCCCEEEcccccC
Q 035490          129 FKLQKLSIRRNLL  141 (142)
Q Consensus       129 ~~L~~L~l~~n~i  141 (142)
                      ++|+.|++++|.+
T Consensus       178 ~~L~~L~Ls~n~l  190 (768)
T 3rgz_A          178 GELKHLAISGNKI  190 (768)
T ss_dssp             TTCCEEECCSSEE
T ss_pred             CCCCEEECCCCcc
Confidence            6666666666643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=4e-19  Score=120.59  Aligned_cols=131  Identities=21%  Similarity=0.228  Sum_probs=105.4

Q ss_pred             cccCcCCCCCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCC
Q 035490           10 TTSLNNSINLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNL   80 (142)
Q Consensus        10 ~~~~~~~~~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l   80 (142)
                      ...|...+..|.|+++.|....         ++++.|++++|. +.+..+..+..+++|+.|++++|.+....+..+..+
T Consensus         9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l   87 (229)
T 3e6j_A            9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL   87 (229)
T ss_dssp             --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence            3446667899999999997633         679999999999 998778888889999999999999974444556788


Q ss_pred             CCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490           81 FSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        81 ~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ++|+.+++++|.++...+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.|+
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            89999999999988555555778888888888888888 77877778888888888888763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=3.7e-18  Score=112.94  Aligned_cols=124  Identities=19%  Similarity=0.263  Sum_probs=107.3

Q ss_pred             CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCc-cccCccccceeeeccCcceeeCChhhcCCCCCcEEE
Q 035490           18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSP-YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLM   87 (142)
Q Consensus        18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~   87 (142)
                      ..|.|+.+.|....         .+++.|++++|. +.+..+. .+..+++|++|++++|.+++..|..+..++.|+.++
T Consensus         6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A            6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            35667667665432         479999999999 8866554 488899999999999999977788999999999999


Q ss_pred             ccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490           88 ITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        88 l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++.
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9999999777777999999999999999999777888999999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=4.3e-18  Score=134.12  Aligned_cols=117  Identities=21%  Similarity=0.303  Sum_probs=105.2

Q ss_pred             eeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeee-ccCcceee-----------------------------
Q 035490           23 TGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINI-ADNSFHGE-----------------------------   72 (142)
Q Consensus        23 ~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l-~~n~l~~~-----------------------------   72 (142)
                      .|+.|... .+++.|+++++. +.|.+|+.+..+++|+.|++ ++|.++|.                             
T Consensus       315 ~GV~C~~~-~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l  392 (876)
T 4ecn_A          315 PGVDLDNN-GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL  392 (876)
T ss_dssp             TTEEECTT-SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHT
T ss_pred             CceEecCC-CCEEEEECccCC-CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhh
Confidence            99999863 889999999999 99999999999999999999 77755433                             


Q ss_pred             -----------------------------------------------CChhhcCCCCCcEEEccCccccc----------
Q 035490           73 -----------------------------------------------IPREIGNLFSLETLMITDNSFSG----------   95 (142)
Q Consensus        73 -----------------------------------------------~~~~~~~l~~L~~l~l~~n~~~~----------   95 (142)
                                                                     +|..++.+++|+.|+++.|.+++          
T Consensus       393 ~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~  472 (876)
T 4ecn_A          393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA  472 (876)
T ss_dssp             CCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             ccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence                                                           78889999999999999999997          


Q ss_pred             -------CCCcccc--CCCCCcEEEccCceeeecCchhhhCCCCCCEEEccccc-C
Q 035490           96 -------LMPTNLS--RCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL-L  141 (142)
Q Consensus        96 -------~~p~~~~--~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~-i  141 (142)
                             .+|..+.  .+++|+.|++++|.+.+.+|..++.+++|+.|++++|. +
T Consensus       473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence                   2888877  99999999999999988999999999999999999997 5

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.7e-17  Score=111.97  Aligned_cols=122  Identities=20%  Similarity=0.228  Sum_probs=81.0

Q ss_pred             CceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEcc
Q 035490           19 LGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMIT   89 (142)
Q Consensus        19 ~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~   89 (142)
                      .|.+..+.|....         +.++.|++++|. +.+..+..+..+++|+.|++++|.+++..|..+..+++|+.++++
T Consensus        10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            4556666665422         457777777777 776655567777777777777777776666677777777777777


Q ss_pred             CcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           90 DNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        90 ~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.|
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            7777643333456667777777777777644455566666677777766655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=2.5e-17  Score=109.92  Aligned_cols=123  Identities=20%  Similarity=0.230  Sum_probs=82.2

Q ss_pred             CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490           18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI   88 (142)
Q Consensus        18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l   88 (142)
                      ..|.|.++.|....         ++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            45677777775432         457888888887 77555555667777888888888777443444567777777777


Q ss_pred             cCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.|
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  136 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL  136 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence            77777744444466677777777777777633333456666777777777655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=2.4e-17  Score=107.48  Aligned_cols=123  Identities=18%  Similarity=0.283  Sum_probs=102.8

Q ss_pred             CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490           18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI   88 (142)
Q Consensus        18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l   88 (142)
                      ..|.|.++.|....         ++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++
T Consensus         5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            45778888886532         679999999999 88766667788999999999999999555555789999999999


Q ss_pred             cCcccccCCCccccCCCCCcEEEccCceeeecCch-hhhCCCCCCEEEcccccCC
Q 035490           89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE-EIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~is  142 (142)
                      ++|.+++..+..+..+++|+.+++++|.++ .+|. .+..+++|+.|++++|++.
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence            999999665556788999999999999999 5554 4678899999999999863

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.72  E-value=2.2e-18  Score=122.62  Aligned_cols=114  Identities=21%  Similarity=0.318  Sum_probs=65.4

Q ss_pred             CCCCCcccC----cCCCCCceeeeeEecC--------CCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceee
Q 035490            5 DPIGFTTSL----NNSINLGQWTGVTCAH--------RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE   72 (142)
Q Consensus         5 ~~~~~~~~~----~~~~~~~~~~g~~~~~--------~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~   72 (142)
                      |+...+..|    ....+.|.|.|+.|..        ...+++.|++++|. +. .+|+.+..+++|++|++++|.++ .
T Consensus        42 ~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~n~l~-~  118 (328)
T 4fcg_A           42 DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LP-QFPDQAFRLSHLQHMTIDAAGLM-E  118 (328)
T ss_dssp             CCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSC-CS-SCCSCGGGGTTCSEEEEESSCCC-C
T ss_pred             CchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCC-ch-hcChhhhhCCCCCEEECCCCCcc-c
Confidence            565667778    4466899999998842        12456666666665 55 44555555555555555555555 5


Q ss_pred             CChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCc
Q 035490           73 IPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIP  122 (142)
Q Consensus        73 ~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p  122 (142)
                      +|..+..+++|+.+++++|.+. .+|..+..+++|+.|++++|.+.+.+|
T Consensus       119 lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p  167 (328)
T 4fcg_A          119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP  167 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred             hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC
Confidence            5555555555555555555555 445445555555555555443333333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=1.3e-16  Score=107.61  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus        57 ~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           57 PQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            445555555555 5544444555555566666666665544444455566666666666666554455555666666666


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..|..+..+++|+.|++++|++
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            666666644455556666666666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=105.92  Aligned_cols=107  Identities=22%  Similarity=0.329  Sum_probs=96.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. ++ .+|..+..+++|+.|++++|.+++..+..+..++.|+.+++++|.++...+..+..+++|+.|+
T Consensus        31 ~~l~~L~L~~n~-i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQ-FT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSC-CC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-Cc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            679999999999 87 5778899999999999999999966667799999999999999999977777899999999999


Q ss_pred             ccCceeeecCch-hhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPE-EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|.++ .+|. .+..+++|+.|++++|++
T Consensus       109 L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          109 LHGNDIS-VVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCSSCCC-BCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCC-eeChhhhhcCccccEEEeCCCCe
Confidence            9999999 5554 588899999999999976

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=8.4e-17  Score=108.52  Aligned_cols=124  Identities=18%  Similarity=0.208  Sum_probs=105.1

Q ss_pred             CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecC-ccccCccccceeeeccCcceeeCChhhcCCCCCcEEE
Q 035490           18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLS-PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLM   87 (142)
Q Consensus        18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~   87 (142)
                      ..|.|..+.|....         ..++.|++++|. +.+..+ ..+..+++|+.|++++|.+++..+..+..+++|+.++
T Consensus         9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A            9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            34666666665422         468899999999 987755 4478899999999999999977677899999999999


Q ss_pred             ccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490           88 ITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        88 l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.|+
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence            9999999766667999999999999999999666788999999999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.67  E-value=1.6e-16  Score=112.23  Aligned_cols=109  Identities=27%  Similarity=0.457  Sum_probs=97.0

Q ss_pred             CcEEEEEcCC-CCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRK-YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~-n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++++.|++++ |. +.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.++++.|.+.+.+|..+..+++|+.|
T Consensus        76 ~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            7799999995 77 888889889999999999999999998889889999999999999999988888888889999999


Q ss_pred             EccCceeeecCchhhhCCC-CCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLF-KLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~-~L~~L~l~~n~i  141 (142)
                      ++++|++++.+|..++.+. +|+.|++++|.+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            9999999888888888887 889999988865

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=3.2e-16  Score=105.65  Aligned_cols=110  Identities=20%  Similarity=0.234  Sum_probs=97.8

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .++++.|++++|. +.+..|..|..+++|+.|++++|.++...+..+..+++|+.+++++|.+++..+..+..+++|+.|
T Consensus        55 l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B           55 YKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             CTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence            3789999999999 998889999999999999999999994444456889999999999999997778889999999999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++++..+..+..+++|+.|++++|++
T Consensus       134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            9999999955455688899999999999976

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=1.9e-16  Score=120.07  Aligned_cols=109  Identities=25%  Similarity=0.219  Sum_probs=88.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ..++.|++++|. +++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|+++...+..|..+++|+.|+
T Consensus        52 ~~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            578999999999 8877777888999999999999999865566788899999999999988854445678888888888


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..+..++.+++|+.|++++|.|
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            888888733333577788888888888765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.65  E-value=1.2e-15  Score=104.54  Aligned_cols=109  Identities=24%  Similarity=0.277  Sum_probs=64.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus        59 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           59 TKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            455666666665 5554444555566666666666666643344455566666666666666643333455666666666


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..+..+..+++|+.|++++|.|
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            666666633233466666677777776655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.65  E-value=1.2e-15  Score=105.76  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|.+++..+..+..+++|+.|+
T Consensus        85 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           85 TNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence            445555555554 4443333344444555555555554433333344444444444444444433223334444444444


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      +++|++++..+..++.+++|+.|++++|.
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            44444442222223344444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=1.3e-15  Score=104.37  Aligned_cols=109  Identities=18%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++|+.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus        83 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  161 (251)
T 3m19_A           83 TELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS  161 (251)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence            556666666666 6654445556666666666666666633333445666666666666666644333566666666666


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..+..+..+++|+.|++++|++
T Consensus       162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            666666633333555666666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=1.5e-15  Score=102.91  Aligned_cols=110  Identities=17%  Similarity=0.188  Sum_probs=95.9

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .++|+.|++++|. +....+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++ .+|..+..+++|+.|
T Consensus        63 l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  140 (229)
T 3e6j_A           63 LINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL  140 (229)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred             ccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence            3789999999999 87655566788999999999999999555556788999999999999998 789889999999999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ++++|++++..+..+..+++|+.|++++|++.
T Consensus       141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            99999999443456888999999999999863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.64  E-value=2.3e-15  Score=104.18  Aligned_cols=109  Identities=29%  Similarity=0.321  Sum_probs=69.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      +.++.|++++|. +.+..+..+..+++|++|++++|.++...+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus        37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            457788888887 7765555677777777777777777733333446677777777777777644334455666666666


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..+..+..+++|+.|++++|.|
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  145 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNEL  145 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence            666666633334455555666666665544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.64  E-value=1.7e-15  Score=108.88  Aligned_cols=109  Identities=19%  Similarity=0.163  Sum_probs=61.2

Q ss_pred             CcEEEEEcCCCCcceeecCcccc-CccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ..++.|++++|. +++..+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            346666666666 6655444444 56666666666666664444455566666666666666654433445555556666


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|+++...+..+..+++|+.|++++|.|
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence            6665555533344455555555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.1e-15  Score=101.25  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=88.7

Q ss_pred             ecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcc-cccCCCccccCCC
Q 035490           27 CAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNS-FSGLMPTNLSRCS  105 (142)
Q Consensus        27 ~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~~~p~~~~~l~  105 (142)
                      .....++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|. ++ .++ .+..++
T Consensus        83 ~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~  159 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP  159 (197)
T ss_dssp             GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS
T ss_pred             hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC
Confidence            33444788899999988 887778888888899999999999887677788888999999999987 65 455 678888


Q ss_pred             CCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          106 NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       106 ~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +|+.+++++|+++ .++ .+..+++|+.|++++|+|+
T Consensus       160 ~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          160 ELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC---
T ss_pred             CCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCcccC
Confidence            9999999999888 554 6778888999999998874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.63  E-value=1.5e-15  Score=111.61  Aligned_cols=109  Identities=20%  Similarity=0.201  Sum_probs=74.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeC-ChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEI-PREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++++.|++++|. +.+..|..+..+++|++|++++|.+.+.+ +..+..+++|+.+++++|.+.+..|..+..+++|+.|
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            567888888887 77766777777777777777777765444 3456677777777777777765556667777777777


Q ss_pred             EccCceeeecCchh--hhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEE--IGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~--~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|.+++..+..  ++.+++|+.|++++|.|
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  141 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI  141 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCcc
Confidence            77777766433333  55566666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=6.4e-16  Score=98.00  Aligned_cols=107  Identities=21%  Similarity=0.263  Sum_probs=63.1

Q ss_pred             CcEEEEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++++.|++++|. +. +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.+++++|.+++.+|..+..+++|+.+
T Consensus        17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            456666666666 55 45555556666666666666666533  445566666666666666664455555556666666


Q ss_pred             EccCceeeec-CchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGE-IPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~-~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++++. .+..+..+++|+.|++++|.+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            6666666521 124555666666666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.1e-15  Score=98.69  Aligned_cols=105  Identities=16%  Similarity=0.182  Sum_probs=71.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC--ccccCCCCCcE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP--TNLSRCSNLIA  109 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p--~~~~~l~~L~~  109 (142)
                      ++++.|++++|. +.+.  ..+..+++|++|++++|.+.+.+|..+..+++|+.+++++|.+++ ++  ..+..+++|+.
T Consensus        49 ~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           49 VNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred             CCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence            667777777777 6654  556667777777777777775566666567777777777777763 23  45666777777


Q ss_pred             EEccCceeeecCch----hhhCCCCCCEEEcccccC
Q 035490          110 FHANNNKLAGEIPE----EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       110 l~l~~n~~~~~~p~----~~~~~~~L~~L~l~~n~i  141 (142)
                      +++++|.++ .+|.    .+..+++|+.|++++|.+
T Consensus       125 L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          125 LDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCCh
Confidence            777777776 4443    566677777777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.62  E-value=2.7e-15  Score=104.38  Aligned_cols=109  Identities=19%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCc-ceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNS-FHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|. +....+..+..+++|+.+++++|.+....+..+..+++|+.+
T Consensus        56 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           56 RNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            344444554444 444444444445555555555554 332223444445555555555555544334445555555555


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++++..+..++.+++|+.|++++|.|
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            5555555522223345555566666655544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=3.2e-15  Score=103.56  Aligned_cols=123  Identities=18%  Similarity=0.163  Sum_probs=102.0

Q ss_pred             CceeeeeEe--cCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccC
Q 035490           19 LGQWTGVTC--AHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL   96 (142)
Q Consensus        19 ~~~~~g~~~--~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~   96 (142)
                      +|.+.++..  ....++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+++.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  172 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL  172 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence            444555443  2233889999999999 9877777788999999999999999965566678899999999999999966


Q ss_pred             CCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490           97 MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        97 ~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      .+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            6666788999999999999999655666888999999999999763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=3.8e-15  Score=99.27  Aligned_cols=110  Identities=17%  Similarity=0.189  Sum_probs=93.9

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.++++.|.++...+..+..+++|+.+
T Consensus        51 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           51 LTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence            3889999999999 886656667889999999999999995555557899999999999999986655568889999999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++++..+..+..+++|+.|++++|.+
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            9999999944444578899999999999976

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=4.5e-15  Score=96.32  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccC
Q 035490           35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN  114 (142)
Q Consensus        35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~  114 (142)
                      +.+++++|. ++. +|..+  .+.++.|++++|.+++..+..+..+++|+.+++++|+++...+..+..+++|+.|++++
T Consensus        12 ~~l~~s~n~-l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKS-LAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSC-CSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCC-cCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            356666666 553 44433  25667777777777755566666677777777777777644444456667777777777


Q ss_pred             ceeeecCchhhhCCCCCCEEEcccccC
Q 035490          115 NKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       115 n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      |++++..+..+..+++|+.|++++|++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            777633233466667777777777755

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.60  E-value=2.9e-15  Score=107.11  Aligned_cols=124  Identities=21%  Similarity=0.199  Sum_probs=95.7

Q ss_pred             CcCCCCCceeeeeEecCC-----------CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCC
Q 035490           13 LNNSINLGQWTGVTCAHR-----------HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLF   81 (142)
Q Consensus        13 ~~~~~~~~~~~g~~~~~~-----------~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~   81 (142)
                      |..+...|.|.++ |.-.           .++++.|++++|. +++..+..+..+++|+.|++++|.+++..+..+..++
T Consensus        23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            4555667777765 4321           1579999999999 8876666888899999999999999876677788899


Q ss_pred             CCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCch--hhhCCCCCCEEEcccc
Q 035490           82 SLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE--EIGCLFKLQKLSIRRN  139 (142)
Q Consensus        82 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n  139 (142)
                      +|+.+++++|.++...+..+..+++|+.|++++|+++ .+|.  .+..+++|+.|++++|
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCC
Confidence            9999999999998433334788889999999999888 5655  5777888888888887

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.60  E-value=3.3e-15  Score=116.54  Aligned_cols=109  Identities=28%  Similarity=0.421  Sum_probs=68.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|.+.+.+|..+..+++|+.|+
T Consensus       442 ~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          442 SKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             TTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCc-ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            445555555555 5555555555566666666666666655666666666666666666666656666666666666666


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++.+|..++.+++|+.|++++|.+
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            666666666666666666666666666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.60  E-value=4.8e-15  Score=108.91  Aligned_cols=110  Identities=21%  Similarity=0.196  Sum_probs=86.5

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+++..|..+..+++|+.|+
T Consensus       299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence            678888888888 7777777777888888888888888766677777888888888888888766677788888888888


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|++++..+..+..+++|+.|++++|+++
T Consensus       378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            8888888433345677888888888888763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.60  E-value=1.2e-14  Score=100.69  Aligned_cols=110  Identities=18%  Similarity=0.289  Sum_probs=84.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|.+.+..+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus        52 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           52 PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             TTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             cCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            678888888887 7766666777778888888888888766666777788888888888887755444677788888888


Q ss_pred             ccCceeee-cCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|.+++ .+|..++.+++|+.|++++|.|+
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            88888874 25777888888888888888763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=6.1e-15  Score=105.99  Aligned_cols=110  Identities=22%  Similarity=0.230  Sum_probs=95.2

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ..+|+.|++++|. +.+..+..|..+++|+.|++++|.++...+..+..+.+|+.|++++|.+....+..+..+++|+.|
T Consensus        63 l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           63 LTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            3789999999999 998777889999999999999999996666678899999999999999987777889999999999


Q ss_pred             EccCceeeecCchh-h---hCCCCCCEEEcccccCC
Q 035490          111 HANNNKLAGEIPEE-I---GCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       111 ~l~~n~~~~~~p~~-~---~~~~~L~~L~l~~n~is  142 (142)
                      ++++|+++ .+|.. +   ..+++|+.|++++|.|+
T Consensus       142 ~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             ECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             ECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            99999999 56654 3   56889999999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.60  E-value=3.5e-15  Score=106.04  Aligned_cols=106  Identities=21%  Similarity=0.237  Sum_probs=65.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. ++ .+|..+..+++|++|++++|.++ .+|+.+..+++|+.+++++|.+.+.+|..+..+++|+.|+
T Consensus       183 ~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          183 VNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             TTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            456666666665 55 45555666666666666666666 4555566666666666666666555666666666666666


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      +++|.+.+.+|..+..+++|+.|++++|.
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            66665555566666666666666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.59  E-value=4.7e-15  Score=112.49  Aligned_cols=109  Identities=17%  Similarity=0.276  Sum_probs=61.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..|..|..+++|++|++++|.+++..|..+..+++|+.+++++|.+....+..+..+++|+.|+
T Consensus        56 ~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  134 (606)
T 3vq2_A           56 SELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN  134 (606)
T ss_dssp             TTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred             ccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence            445555555555 5544444555555555555555555544455555555555555555555533334455556666666


Q ss_pred             ccCceeee-cCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|.+++ .+|..++.+++|+.|++++|.+
T Consensus       135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             CCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             CCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            66666553 3466666666677777766654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=1.3e-14  Score=101.57  Aligned_cols=107  Identities=25%  Similarity=0.298  Sum_probs=59.5

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +. .+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus        77 ~~L~~L~Ls~N~-l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           77 PVLGTLDLSHNQ-LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             TTCCEEECCSSC-CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCEEECCCCc-CC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            455555555555 44 3444555566666666666666633334555666666666666666543333455556666666


Q ss_pred             ccCceeeecCch-hhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPE-EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+++ .+|. .+..+++|+.|++++|.|
T Consensus       155 L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          155 LANNNLT-ELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CTTSCCS-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCC-ccCHHHhcCcCCCCEEECCCCcC
Confidence            6666665 3333 344555666666655554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.59  E-value=9.4e-15  Score=107.69  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..|..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus        75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            679999999999 9988888999999999999999999977778899999999999999999865556688899999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRR  138 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~  138 (142)
                      +++|+++...+..+..+++|+.|++++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCC
Confidence            999998843333455556666666655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.59  E-value=4e-15  Score=111.62  Aligned_cols=108  Identities=19%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.+.+..+..+..+++|+.|+
T Consensus        26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            568888888887 7776677777788888888888888766666777778888888888877755445577777788888


Q ss_pred             ccCceeee-cCchhhhCCCCCCEEEccccc
Q 035490          112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus       112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      +++|.+++ ..|..++.+++|+.|++++|.
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCc
Confidence            88777763 234556667777777777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1.2e-14  Score=94.73  Aligned_cols=102  Identities=16%  Similarity=0.252  Sum_probs=73.2

Q ss_pred             EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccC
Q 035490           35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN  114 (142)
Q Consensus        35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~  114 (142)
                      +.+++++|. +. .+|..+.  +.|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus        15 ~~l~~~~n~-l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIR-LA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSC-CS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCC-CC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            467777777 64 4555443  6778888888888865566777788888888888888754334466778888888888


Q ss_pred             ceeeecCch-hhhCCCCCCEEEcccccC
Q 035490          115 NKLAGEIPE-EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       115 n~~~~~~p~-~~~~~~~L~~L~l~~n~i  141 (142)
                      |+++ .+|. .+..+++|+.|++++|++
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCCc
Confidence            8887 4444 477778888888888875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.58  E-value=9.1e-15  Score=101.68  Aligned_cols=60  Identities=25%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             CCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccc
Q 035490           80 LFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus        80 l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n  139 (142)
                      +++|+.+++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus       176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            333333333333333333333333333444444443333221222333344444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.58  E-value=1e-14  Score=110.70  Aligned_cols=109  Identities=15%  Similarity=0.068  Sum_probs=79.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ..++.|++++|. +++..|..+..+++|++|++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus        33 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            567788888887 7776677777778888888888877766677777777788888887777766666777777777777


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..+..++.+++|+.|++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcc
Confidence            777777633344566666777777776655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=107.56  Aligned_cols=109  Identities=22%  Similarity=0.291  Sum_probs=83.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|++++|. +.+..+..|..+++|+.|++++|.+++..|..+..+++|+.++++.|.++...+..+..+++|+.|+
T Consensus        32 ~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            568888888888 8877777788888888888888888866677788888888888888888744334567778888888


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++.+..+..+..+++|+.|++++|.+
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l  140 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDL  140 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCcc
Confidence            888887755566677777777777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.57  E-value=1.7e-14  Score=109.30  Aligned_cols=110  Identities=18%  Similarity=0.289  Sum_probs=97.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++|+.|++++|. +++..+..|..+++|++|++++|.+++..+..+..+++|+.++++.|.+++..+..+..+++|+.|+
T Consensus        76 ~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           76 PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  154 (635)
T ss_dssp             TTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence            789999999999 9987777899999999999999999955556789999999999999999865556799999999999


Q ss_pred             ccCceeee-cCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|.++. ..|..++.+++|+.|++++|.|+
T Consensus       155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccCccccCCCchhhccchhhhhhcccCcccc
Confidence            99999974 35778888999999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=5.6e-15  Score=114.77  Aligned_cols=106  Identities=32%  Similarity=0.451  Sum_probs=98.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ..|+.|++++|. +. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus       224 ~~L~~L~Ls~n~-l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQ-IF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSC-CS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCC-CC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            679999999999 77 67878889999999999999999 89999999999999999999999 7899999999999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|.++ .+|..++.+++|+.|++++|.|+
T Consensus       300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence            9999998 88988999999999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=9.9e-15  Score=101.07  Aligned_cols=110  Identities=25%  Similarity=0.217  Sum_probs=97.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      +.++.|++++|. +++..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.++
T Consensus        28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            579999999999 9987777899999999999999999966667889999999999999999877667899999999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|.+.+..+..++.+++|+.|++++|.+.
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  137 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccc
Confidence            9999998444446888999999999999763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.56  E-value=3e-14  Score=101.07  Aligned_cols=120  Identities=18%  Similarity=0.252  Sum_probs=101.7

Q ss_pred             CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490           18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI   88 (142)
Q Consensus        18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l   88 (142)
                      ..|.++.+.|....         ++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            35788888886432         579999999999 99877788999999999999999999777888999999999999


Q ss_pred             cCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +.|.+. .+|..+.  ++|+.|++++|+++...+..+..+++|+.|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            999998 6676554  7899999999999844445688899999999999876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.56  E-value=1.8e-14  Score=109.32  Aligned_cols=110  Identities=24%  Similarity=0.294  Sum_probs=97.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.+....|..+..+++|+.|+
T Consensus        32 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            779999999999 8887777899999999999999999977788889999999999999999877788899999999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|.+++..+..++.+++|+.|++++|.+.
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  141 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIH  141 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCccc
Confidence            9999998444467888999999999998763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.56  E-value=1.4e-14  Score=101.61  Aligned_cols=109  Identities=17%  Similarity=0.234  Sum_probs=53.8

Q ss_pred             CcEEEEEcCCCCccee-ecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRG-FLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++++.|++++|. +.+ ..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+....+..+..+++|+.+
T Consensus       150 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          150 SSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             TTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             cCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            445555555554 443 334444445555555555555554444444455555555555555543333344445555555


Q ss_pred             EccCceeeecCchhhhCCC-CCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLF-KLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~-~L~~L~l~~n~i  141 (142)
                      ++++|++++..|..+..++ +|+.|++++|++
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            5555555544444444442 555555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.56  E-value=2.5e-14  Score=98.95  Aligned_cols=62  Identities=23%  Similarity=0.297  Sum_probs=23.0

Q ss_pred             CCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEccccc
Q 035490           79 NLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus        79 ~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      .+++|+.+++++|.+....+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            33334444444333332222223333444444444444431111123333444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.56  E-value=1.3e-14  Score=101.86  Aligned_cols=111  Identities=23%  Similarity=0.271  Sum_probs=99.0

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCccee-eCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG-EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIA  109 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~  109 (142)
                      .++++.|++++|. +.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.+++++|.+++..|..+..+++|+.
T Consensus       125 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          125 LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             CTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            3789999999999 988888888999999999999999986 57888889999999999999999777888999999999


Q ss_pred             EEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          110 FHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       110 l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      |++++|++++..+..+..+++|+.|++++|.|.
T Consensus       204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             EECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            999999998554557888999999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.1e-14  Score=94.03  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=95.0

Q ss_pred             CcEEEEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++++.|++++|. +. +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.+++++|.+.+.+|..+..+++|+.|
T Consensus        24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            779999999999 87 67788888999999999999999854  678889999999999999997678777779999999


Q ss_pred             EccCceeeecCc--hhhhCCCCCCEEEcccccCC
Q 035490          111 HANNNKLAGEIP--EEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       111 ~l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~is  142 (142)
                      ++++|.++ .++  ..+..+++|+.|++++|.|+
T Consensus       101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc
Confidence            99999998 554  67888999999999999863

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=3.4e-14  Score=99.38  Aligned_cols=109  Identities=19%  Similarity=0.155  Sum_probs=95.9

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .++++.|++++|. +++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|+++...+..+..+++|+.|
T Consensus        99 l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G           99 LPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             CTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence            3789999999999 997777789999999999999999995555667889999999999999995444557889999999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|+++ .+|..+....+|+.+++++|++
T Consensus       178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             ECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            99999999 8888888888999999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.54  E-value=1.5e-14  Score=95.69  Aligned_cols=106  Identities=16%  Similarity=0.232  Sum_probs=76.8

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +..  ++.+..+++|++|++++|.+++..+..+..+++|+.++++.|.+++..+..+..+++|+.|+
T Consensus        66 ~~L~~L~l~~n~-~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           66 HNIKDLTINNIH-ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             TTCSEEEEESCC-CSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCEEEccCCC-CCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            667777777776 552  23566777788888888877765666777777888888888887765666677777888888


Q ss_pred             ccCce-eeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNK-LAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~-~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|. ++ .++ .+..+++|+.|++++|.|+
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            88776 55 555 5677778888888877663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.54  E-value=1.5e-14  Score=113.81  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=56.7

Q ss_pred             CcEEEEEcCCCCcceeec-CccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCcc--ccCCCCCc
Q 035490           32 QKVAKLDLRKYQSLRGFL-SPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN--LSRCSNLI  108 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~--~~~l~~L~  108 (142)
                      ++|+.|++++|. ..+.+ |..+..+++|+.|++++|.+.+..|..+..+++|+.++++.|.+.+..|..  +..+++|+
T Consensus        48 ~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           48 EQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             ccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            344444444443 22222 344555555555555555555444555555555555555555555433332  55555666


Q ss_pred             EEEccCceeeecCc-hhhhCCCCCCEEEcccccC
Q 035490          109 AFHANNNKLAGEIP-EEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       109 ~l~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~i  141 (142)
                      .|++++|.+++..+ ..++.+++|+.|++++|.+
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            66666666553322 3455666666666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=4e-14  Score=93.47  Aligned_cols=104  Identities=17%  Similarity=0.233  Sum_probs=89.5

Q ss_pred             EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCCh-hhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490           35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPR-EIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN  113 (142)
Q Consensus        35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~  113 (142)
                      +.++++++. ++ .+|..+.  ..++.|++++|.+.+..+. .+..+++|+.+++++|.+++..|..+..+++|+.|+++
T Consensus        11 ~~l~~s~~~-l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRG-LK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSC-CS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCC-cC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            688999998 75 5676554  3899999999999854443 38899999999999999998778899999999999999


Q ss_pred             CceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +|++++..+..+..+++|+.|++++|.|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            99999766667889999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=2.5e-14  Score=108.46  Aligned_cols=104  Identities=22%  Similarity=0.331  Sum_probs=90.1

Q ss_pred             cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490           33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA  112 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l  112 (142)
                      .++.|++++|. +++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus       442 ~L~~L~Ls~n~-l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKD-LTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSC-CSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCC-CCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            47889999998 886 565 888999999999999999 888889999999999999999985 67 7888999999999


Q ss_pred             cCceeeecC-chhhhCCCCCCEEEcccccCC
Q 035490          113 NNNKLAGEI-PEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       113 ~~n~~~~~~-p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ++|++++.. |..++.+++|+.|++++|.|+
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            999998554 888889999999999999763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=6.2e-14  Score=92.69  Aligned_cols=103  Identities=20%  Similarity=0.288  Sum_probs=88.7

Q ss_pred             EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccC
Q 035490           35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN  114 (142)
Q Consensus        35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~  114 (142)
                      +.++++++. ++ .+|..+  .+.++.|++++|.++ .+|..+..+++|+.++++.|.++...+..|..+++|+.|++++
T Consensus        13 ~~l~~~~~~-l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKG-LK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSC-CS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCC-CC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            467788887 66 456544  357999999999998 8888999999999999999999977667899999999999999


Q ss_pred             ceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          115 NKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       115 n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      |++++..+..+..+++|+.|++++|.|+
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence            9999555667899999999999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.53  E-value=6.4e-14  Score=99.26  Aligned_cols=120  Identities=18%  Similarity=0.256  Sum_probs=92.2

Q ss_pred             CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490           18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI   88 (142)
Q Consensus        18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l   88 (142)
                      ..|.++.+.|....         +.++.|++++|. +++..+..+..+++|++|++++|.+++..|..+..+++|+.+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            36778888876422         678999999999 98777778899999999999999999777888999999999999


Q ss_pred             cCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +.|.++ .+|..+.  ++|+.+++++|++++..+..+..+++|+.|++++|.+
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  157 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL  157 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence            999987 5565443  5677777777777644444566666666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.53  E-value=6.7e-14  Score=95.06  Aligned_cols=105  Identities=19%  Similarity=0.219  Sum_probs=72.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCc-ceeeCChhhcCCCCCcEEEccC-cccccCCCccccCCCCCcE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNS-FHGEIPREIGNLFSLETLMITD-NSFSGLMPTNLSRCSNLIA  109 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~l~~-n~~~~~~p~~~~~l~~L~~  109 (142)
                      ..++.|++++|. +++..+..+..+++|+.|++++|. ++...+..+..+++|+.+++++ |.++...+..+..+++|+.
T Consensus        31 ~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            467888888888 776666677778888888888886 6644445677777888888877 7777544456777777777


Q ss_pred             EEccCceeeecCchhhhCCCCCC---EEEcccc
Q 035490          110 FHANNNKLAGEIPEEIGCLFKLQ---KLSIRRN  139 (142)
Q Consensus       110 l~l~~n~~~~~~p~~~~~~~~L~---~L~l~~n  139 (142)
                      +++++|+++ .+|. +..+.+|+   .|++++|
T Consensus       110 L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          110 LGIFNTGLK-MFPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEEEEECCC-SCCC-CTTCCBCCSEEEEEEESC
T ss_pred             EeCCCCCCc-cccc-cccccccccccEEECCCC
Confidence            777777666 3544 44555555   5555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.53  E-value=5.7e-14  Score=101.60  Aligned_cols=108  Identities=19%  Similarity=0.247  Sum_probs=72.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCcc-ccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~-~~~l~~L~~l  110 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+. .+|.. +..+++|+.|
T Consensus        69 ~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           69 RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence            456777777776 66655556677777777777777777555555667777777777777776 34433 5667777777


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++++..+..+..+++|+.|++++|.+
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            7777777644455566677777777777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=5.2e-14  Score=104.89  Aligned_cols=118  Identities=19%  Similarity=0.150  Sum_probs=76.6

Q ss_pred             CceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc-CCCCCcEEEccCcccccCC
Q 035490           19 LGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG-NLFSLETLMITDNSFSGLM   97 (142)
Q Consensus        19 ~~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~n~~~~~~   97 (142)
                      +|.+.++.+... ++++.|++++|. +.+..|..+..+++|+.|++++|.+++..|..+. .+++|+.+++++|.+++. 
T Consensus       108 ~N~l~~~~~~~l-~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          108 NNNISRVSCSRG-QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             SSCCCCEEECCC-SSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             CCcCCCCCcccc-CCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            445555555433 667888888887 7776676777777888888888888766666654 567777777777776643 


Q ss_pred             CccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           98 PTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        98 p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      + ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.|
T Consensus       185 ~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          185 K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC
T ss_pred             c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC
Confidence            2 22345666666666666663 344455566666666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=5.2e-14  Score=107.06  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=80.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|+.|++++|.+++..|..++.+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        75 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            457777777777 7766666777778888888888887765566667788888888888887743333457778888888


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|.+++..|..++.+++|+.|++++|.|
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence            888888755566677778888888887765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.52  E-value=8.2e-14  Score=102.36  Aligned_cols=106  Identities=17%  Similarity=0.180  Sum_probs=86.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        64 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            668999999999 9988888899999999999999999976677888999999999999999855455688889999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRR  138 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~  138 (142)
                      +++|+++...+..+..+++|+.|++++
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCC
Confidence            999988744343555566666666655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.52  E-value=5.4e-14  Score=106.11  Aligned_cols=107  Identities=19%  Similarity=0.170  Sum_probs=94.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.++ .+|..  .+++|+.|+
T Consensus        52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            789999999999 98777788999999999999999999777888999999999999999998 56765  789999999


Q ss_pred             ccCceeee-cCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|++++ ..|..++.+++|+.|++++|.|+
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            99999984 34578999999999999998763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.51  E-value=3e-14  Score=103.05  Aligned_cols=109  Identities=16%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|+++++. +....+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..|..+..+++|+.|+
T Consensus        45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            678999999998 7754444567899999999999999976677899999999999999999977677789999999999


Q ss_pred             ccCceeeecCchh-hhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEE-IGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~-~~~~~~L~~L~l~~n~is  142 (142)
                      +++|+++ .+|.. +..+++|+.|++++|.|.
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~  154 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE  154 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccC
Confidence            9999999 66654 688999999999999763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.51  E-value=4.7e-14  Score=106.10  Aligned_cols=109  Identities=24%  Similarity=0.280  Sum_probs=71.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcce-eeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFH-GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++++.|++++|. +.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++|.+++..|..+..+++|+.+
T Consensus       421 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          421 RNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             TTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            556666666666 66555556666666666666666665 3556666666677777777777665556666667777777


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++++..+..+..+++|+.|++++|++
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            7777777644444566667777777777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=1.6e-14  Score=101.79  Aligned_cols=108  Identities=18%  Similarity=0.197  Sum_probs=69.3

Q ss_pred             CcEEEEEcCCCCcceeecCccc--cCccccceeeeccCcceeeCChhhcCC-----CCCcEEEccCcccccCCCccccCC
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYV--GNLSFLRHINIADNSFHGEIPREIGNL-----FSLETLMITDNSFSGLMPTNLSRC  104 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~p~~~~~l  104 (142)
                      ++++.|++++|. +.+..|..+  ..+++|++|++++|.+++. |..+..+     ++|+.+++++|.+.+..+..+..+
T Consensus        95 ~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           95 SGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             SCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            567777777777 766666655  6677777777777777744 5555544     667777777777765555666667


Q ss_pred             CCCcEEEccCceeeec--Cchhh--hCCCCCCEEEcccccC
Q 035490          105 SNLIAFHANNNKLAGE--IPEEI--GCLFKLQKLSIRRNLL  141 (142)
Q Consensus       105 ~~L~~l~l~~n~~~~~--~p~~~--~~~~~L~~L~l~~n~i  141 (142)
                      ++|+.|++++|++.+.  .+..+  ..+++|+.|++++|.|
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l  213 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM  213 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence            7777777777765533  22222  5556666666666655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.51  E-value=2.6e-14  Score=106.68  Aligned_cols=106  Identities=21%  Similarity=0.188  Sum_probs=76.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.++ .+|..  .+++|+.|+
T Consensus        21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            667777777777 77665566777777777777777777666677777777777777777776 45554  567777777


Q ss_pred             ccCceeee-cCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++ .+|..++.+++|+.|++++|.|
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             ccCCccccccchhhhccCCcceEEEecCccc
Confidence            77777764 3566777777777777777765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.51  E-value=1.3e-13  Score=103.68  Aligned_cols=109  Identities=18%  Similarity=0.291  Sum_probs=84.8

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus        52 ~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  130 (570)
T 2z63_A           52 PELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (570)
T ss_dssp             SSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred             CCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence            678888888887 7776666777788888888888888766666777888888888888887744334577888888888


Q ss_pred             ccCceeee-cCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAG-EIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~-~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|.+++ .+|..++.+++|+.|++++|.+
T Consensus       131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             cCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence            88888874 3577888888888888888875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.51  E-value=6.2e-14  Score=103.75  Aligned_cols=109  Identities=19%  Similarity=0.189  Sum_probs=76.5

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++|+.|++++|. +.+..|..+..+++|+.|++++|.++...+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus        56 ~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           56 PHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            678888888887 7777777777778888888888877743334466777777777777777765566666777777777


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|.+.+..+..+..+++|+.|++++|.+
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            777776644455566666666666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=5.9e-14  Score=91.31  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCc--cccCCCCCcEE
Q 035490           33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPT--NLSRCSNLIAF  110 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~--~~~~l~~L~~l  110 (142)
                      +++.|++++|. +.+.  ..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++ .+|.  .+..+++|+.+
T Consensus        43 ~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCEEECCCCC-CCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            77888888887 7754  56777778888888888887433333477788888888888876 4454  67777788888


Q ss_pred             EccCceeeecCchh----hhCCCCCCEEEccccc
Q 035490          111 HANNNKLAGEIPEE----IGCLFKLQKLSIRRNL  140 (142)
Q Consensus       111 ~l~~n~~~~~~p~~----~~~~~~L~~L~l~~n~  140 (142)
                      ++++|.++ .+|..    +..+++|+.||++.|.
T Consensus       119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            88888887 55553    6777788888887765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=3.2e-14  Score=92.59  Aligned_cols=104  Identities=24%  Similarity=0.306  Sum_probs=87.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCcc-ccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLS-FLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .+++.|++++|. +.. ++ .+..+. +|+.|++++|.+++.  +.+..+++|+.+++++|.++...+..+..+++|+.|
T Consensus        19 ~~L~~L~l~~n~-l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYK-IPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSC-CCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCC-Cch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            679999999999 884 34 455555 899999999999954  578889999999999999985433445889999999


Q ss_pred             EccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++. .+|.  .+..+++|+.|++++|.+
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence            99999997 6776  788899999999999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.50  E-value=8.4e-14  Score=106.96  Aligned_cols=108  Identities=21%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..+++|+.+++++|.++...+..+..+++|+.|+
T Consensus        25 ~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            445555555555 5544444455555555555555555544444455555555555555555422222344555555555


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      +++|++++..|..++.+++|+.|++++|.
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  132 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNG  132 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCc
Confidence            55555542222334444445555554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.1e-13  Score=89.83  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=85.1

Q ss_pred             CceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEcc
Q 035490           19 LGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMIT   89 (142)
Q Consensus        19 ~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~   89 (142)
                      .|.|+.+.|....         .+++.|++++|. +++..+..+..+++|++|++++|.+++..+..+..+++|+.++++
T Consensus         8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A            8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4566666665422         679999999999 998888889999999999999999995555567899999999999


Q ss_pred             CcccccCCCccccCCCCCcEEEccCceeeec
Q 035490           90 DNSFSGLMPTNLSRCSNLIAFHANNNKLAGE  120 (142)
Q Consensus        90 ~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~  120 (142)
                      +|.+++..+..+..+++|+.+++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999965555688999999999999999754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.48  E-value=8.5e-14  Score=105.88  Aligned_cols=109  Identities=16%  Similarity=0.200  Sum_probs=95.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.+++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus        51 ~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            567899999998 7765555577899999999999999977777899999999999999999977777789999999999


Q ss_pred             ccCceeeecCch-hhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPE-EIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|.++ .+|. .++.+++|+.|++++|.|+
T Consensus       130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~  160 (597)
T 3oja_B          130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE  160 (597)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC
Confidence            9999999 5555 4688999999999999864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.48  E-value=1.4e-14  Score=110.94  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=96.4

Q ss_pred             CceeeeeEe-cCCCCcEEEEEcCCCCcceee-----------------cCcccc--CccccceeeeccCcceeeCChhhc
Q 035490           19 LGQWTGVTC-AHRHQKVAKLDLRKYQSLRGF-----------------LSPYVG--NLSFLRHINIADNSFHGEIPREIG   78 (142)
Q Consensus        19 ~~~~~g~~~-~~~~~~l~~L~l~~n~~~~~~-----------------~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~   78 (142)
                      .+.+.|+.- ....++++.|++++|. +++.                 +|..+.  .+++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            345666322 1233789999999999 8875                 888888  899999999999998888898888


Q ss_pred             CCCCCcEEEccCcc-ccc-CCCccccCC------CCCcEEEccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490           79 NLFSLETLMITDNS-FSG-LMPTNLSRC------SNLIAFHANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        79 ~l~~L~~l~l~~n~-~~~-~~p~~~~~l------~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i  141 (142)
                      .+++|+.++++.|. +++ .+|..+..+      ++|+.|++++|+++ .+|.  .++.+++|+.|++++|.+
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence            89999999999998 776 677766665      78888888888888 7777  788888888888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.48  E-value=2.6e-13  Score=95.79  Aligned_cols=108  Identities=18%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc-CCCCCcEEEccCccccc---------------
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG-NLFSLETLMITDNSFSG---------------   95 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~n~~~~---------------   95 (142)
                      ++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+. .+++|+.+++++|.++.               
T Consensus       120 ~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~L  198 (317)
T 3o53_A          120 QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL  198 (317)
T ss_dssp             SSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred             CCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEEC
Confidence            445555555555 5544444455555555555555555543333332 34445555555554442               


Q ss_pred             ------CCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           96 ------LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        96 ------~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                            .+|..+..+++|+.+++++|+++ .+|..+..+++|+.|++++|.+
T Consensus       199 s~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          199 SSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             CSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred             CCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence                  22333444455555555555554 3444444455555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=3.7e-14  Score=89.80  Aligned_cols=104  Identities=17%  Similarity=0.171  Sum_probs=89.3

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccC-CCccccCCCCCcE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL-MPTNLSRCSNLIA  109 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~  109 (142)
                      .++++.|++++|. +.+.  ..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|.+++. .+..+..+++|+.
T Consensus        41 l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A           41 FEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             CTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred             cCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence            3889999999999 8865  7788899999999999999966887777899999999999999852 2377889999999


Q ss_pred             EEccCceeeecCc---hhhhCCCCCCEEEcc
Q 035490          110 FHANNNKLAGEIP---EEIGCLFKLQKLSIR  137 (142)
Q Consensus       110 l~l~~n~~~~~~p---~~~~~~~~L~~L~l~  137 (142)
                      +++++|++++..+   ..+..+++|+.|+++
T Consensus       118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999999984333   368889999999986

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.47  E-value=1.9e-13  Score=103.69  Aligned_cols=110  Identities=15%  Similarity=0.072  Sum_probs=87.3

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .++++.|++++|. +.+..|..|..+++|++|++++|.+.+..|..+..+++|+.+++++|.++...+..+..+++|+.|
T Consensus        56 l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L  134 (606)
T 3t6q_A           56 LINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL  134 (606)
T ss_dssp             CTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred             CccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence            3789999999998 888788888889999999999999887778888888899999999888885445667788888888


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|++++.....+..+++|+.|++++|.+
T Consensus       135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A          135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             ECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCcccccCCcccCEEEcccCcc
Confidence            8888888742223333477788888887765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.46  E-value=3.3e-13  Score=95.60  Aligned_cols=108  Identities=15%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+. .+|..+..+++|+.++
T Consensus       192 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          192 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  269 (330)
T ss_dssp             TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence            445555555555 55555555555666666666666665444445555666666666666665 4555555556666666


Q ss_pred             ccCceeeecCchhhhC------CCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGC------LFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~------~~~L~~L~l~~n~i  141 (142)
                      +++|++++.-+..+..      ...++.+++.+|++
T Consensus       270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            6666665221222211      23455566666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.45  E-value=2.4e-13  Score=97.18  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=87.6

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCCh-hhcCCCCCcEEEccCcccccCCCc--cccCCCCC
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPR-EIGNLFSLETLMITDNSFSGLMPT--NLSRCSNL  107 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~n~~~~~~p~--~~~~l~~L  107 (142)
                      .++++.|++++|. +.+..+..+..+++|++|++++|.++ .++. .+..+++|+.+++++|.+. .+|.  .+..+++|
T Consensus        75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L  151 (353)
T 2z80_A           75 CVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL  151 (353)
T ss_dssp             CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTC
T ss_pred             CCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCC
Confidence            3789999999998 88877788889999999999999998 4554 4788999999999999988 4554  67788899


Q ss_pred             cEEEccCc-eeeecCchhhhCCCCCCEEEcccccC
Q 035490          108 IAFHANNN-KLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       108 ~~l~l~~n-~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +.+++++| .+....+..+..+++|+.|++++|.+
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            99999888 46644455677778888888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.45  E-value=2.5e-13  Score=100.07  Aligned_cols=107  Identities=19%  Similarity=0.244  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++|+.|++++|. +.+.  +.+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+....+..+..+++|+.|+
T Consensus       196 ~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  272 (452)
T 3zyi_A          196 FNLKYLNLGMCN-IKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN  272 (452)
T ss_dssp             TTCCEEECTTSC-CSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-cccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence            556666666666 5532  2456667777777777777766667777777788888877777766666777777888888


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..+..+..+++|+.|++++|++
T Consensus       273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            888877733334566677788888887764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=102.13  Aligned_cols=109  Identities=24%  Similarity=0.259  Sum_probs=70.4

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCccee--eCChhhcCCCCCcEEEccCcccccCCCcc-ccCCC--
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG--EIPREIGNLFSLETLMITDNSFSGLMPTN-LSRCS--  105 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~p~~-~~~l~--  105 (142)
                      .++++.|++++|. +.+..|..+..+++|+.|++++|.+++  .+|..+..+++|+.+++++|.+.+.+|.. +..++  
T Consensus       323 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          323 ISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            3667777777777 776667777777777777777777764  34455666777777777777776434432 33333  


Q ss_pred             --------------------CCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          106 --------------------NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       106 --------------------~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                                          +|+.|++++|+++ .+|..+..+++|+.|++++|+|
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l  456 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL  456 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence                                5555555555555 5555555666777777777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.45  E-value=2e-13  Score=104.84  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=72.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..|..+..+++|+.|++++|.+++..+..+..+++|+.++++.|.+.+..+..+..+++|++|+
T Consensus        49 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           49 SQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             CcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            567777777777 7766666666777777777777777632233466677777777777777644445666677777777


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|.+++..+..++.+++|+.|++++|.+
T Consensus       128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          128 LSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             CCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             CCCCcccccCchhhcccccCCEEEccCCcc
Confidence            777776655455566666677777666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.45  E-value=3.2e-13  Score=99.24  Aligned_cols=107  Identities=16%  Similarity=0.253  Sum_probs=74.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++|+.|++++|. ++. +| .+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+....+..+..+++|+.|+
T Consensus       185 ~~L~~L~L~~n~-l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (440)
T 3zyj_A          185 SNLRYLNLAMCN-LRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN  261 (440)
T ss_dssp             SSCCEEECTTSC-CSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred             cccCeecCCCCc-Ccc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence            556666666666 552 22 356666777777777777766666777777777777777777766666677777788888


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+++...+..+..+++|+.|++++|++
T Consensus       262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            888877743344566777788888877764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.44  E-value=2.9e-13  Score=101.50  Aligned_cols=123  Identities=20%  Similarity=0.216  Sum_probs=98.2

Q ss_pred             CceeeeeEe--cCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCccccc-
Q 035490           19 LGQWTGVTC--AHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSG-   95 (142)
Q Consensus        19 ~~~~~g~~~--~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~-   95 (142)
                      ++...++..  ....++++.|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+++|+.+++++|.+.+ 
T Consensus        35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  113 (549)
T 2z81_A           35 FNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL  113 (549)
T ss_dssp             SSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred             CCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence            444555432  2333889999999999 998888889999999999999999996666668999999999999999975 


Q ss_pred             CCCccccCCCCCcEEEccCceeeecCc-hhhhCCCCCCEEEcccccCC
Q 035490           96 LMPTNLSRCSNLIAFHANNNKLAGEIP-EEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        96 ~~p~~~~~l~~L~~l~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~is  142 (142)
                      ..|..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|.++
T Consensus       114 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A          114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            246678889999999999988433554 46888888899998888763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=7.5e-13  Score=86.03  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=86.0

Q ss_pred             EEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490           34 VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN  113 (142)
Q Consensus        34 l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~  113 (142)
                      .+.++++++. +.. +|..+  .+.|+.|++++|.+.+..+..+..+++|+.+++++|.++...+..+..+++|+.|+++
T Consensus         9 ~~~l~~~~~~-l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKG-LTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSC-CSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCC-Ccc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4678899988 763 45433  3689999999999995555567889999999999999986555567889999999999


Q ss_pred             CceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +|++++..+..+..+++|+.|++++|.|+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcce
Confidence            99999544455788999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.44  E-value=5.2e-14  Score=111.13  Aligned_cols=121  Identities=19%  Similarity=0.233  Sum_probs=95.4

Q ss_pred             ceeeeeEe-cCCCCcEEEEEcCCCCccee-----------------ecCcccc--CccccceeeeccCcceeeCChhhcC
Q 035490           20 GQWTGVTC-AHRHQKVAKLDLRKYQSLRG-----------------FLSPYVG--NLSFLRHINIADNSFHGEIPREIGN   79 (142)
Q Consensus        20 ~~~~g~~~-~~~~~~l~~L~l~~n~~~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~   79 (142)
                      +.+.|+.. ....++|+.|++++|. +.+                 .+|..+.  .+++|+.|++++|.+.+.+|..+..
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            45666332 1233789999999999 887                 3788877  8999999999999988889988999


Q ss_pred             CCCCcEEEccCcc-ccc-CCCccccCC-------CCCcEEEccCceeeecCch--hhhCCCCCCEEEcccccCC
Q 035490           80 LFSLETLMITDNS-FSG-LMPTNLSRC-------SNLIAFHANNNKLAGEIPE--EIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        80 l~~L~~l~l~~n~-~~~-~~p~~~~~l-------~~L~~l~l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|+.+++++|. +++ .+|..+..+       ++|+.|++++|+++ .+|.  .++.+++|+.|++++|.|+
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence            9999999999997 776 566655444       48888888888888 7787  7888888888888888763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.43  E-value=6.1e-13  Score=94.80  Aligned_cols=90  Identities=20%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             cCccccCccccceeeecc-CcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCch-hhh
Q 035490           49 LSPYVGNLSFLRHINIAD-NSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPE-EIG  126 (142)
Q Consensus        49 ~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~-~~~  126 (142)
                      +|. +..+.+|+.|++++ |.+.+..+..+..+.+|+.|+++.|.+++..|..|..+++|+.|+|++|+|+ .+|. .+.
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~  101 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ  101 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcc
Confidence            444 55555666666664 6665444455556666666666666665554555556666666666666665 3333 233


Q ss_pred             CCCCCCEEEcccccC
Q 035490          127 CLFKLQKLSIRRNLL  141 (142)
Q Consensus       127 ~~~~L~~L~l~~n~i  141 (142)
                      .+. |+.|++.+|.|
T Consensus       102 ~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A          102 GLS-LQELVLSGNPL  115 (347)
T ss_dssp             SCC-CCEEECCSSCC
T ss_pred             cCC-ceEEEeeCCCc
Confidence            332 66666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.43  E-value=4.5e-13  Score=94.63  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +++. + ....+++|++|++++|.++ .+++.+..+++|+.+++++|.+. .+|..+..+++|+.++
T Consensus       169 ~~L~~L~L~~N~-l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          169 DTLEHLNLQYNF-IYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD  243 (317)
T ss_dssp             TTCCEEECTTSC-CCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEE
T ss_pred             CcCCEEECCCCc-Cccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEE
Confidence            566777777776 6644 2 2234778888899999888 56666889999999999999998 5688888999999999


Q ss_pred             ccCceee-ecCchhhhCCCCCCEEEccc
Q 035490          112 ANNNKLA-GEIPEEIGCLFKLQKLSIRR  138 (142)
Q Consensus       112 l~~n~~~-~~~p~~~~~~~~L~~L~l~~  138 (142)
                      +++|.+. +.++..+..+++|+.+++.+
T Consensus       244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          244 LRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccCCCccCcCHHHHHhccccceEEECCC
Confidence            9999998 56677788888888777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.41  E-value=4e-13  Score=95.56  Aligned_cols=103  Identities=18%  Similarity=0.333  Sum_probs=44.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+.  +.+..+++|+.|++++|.+++ + +.+..+++|+.+++++|.+.+..+..+..+++|+.++
T Consensus       243 ~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  317 (347)
T 4fmz_A          243 SQLTWLEIGTNQ-ISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF  317 (347)
T ss_dssp             TTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred             CCCCEEECCCCc-cCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence            344444444444 3321  223444444444444444442 2 2344444455555554444433334444445555555


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..|  +..+++|+.|++++|.|
T Consensus       318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          318 LSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             CCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             ccCCccccccC--hhhhhccceeehhhhcc
Confidence            55555542222  44445555555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.41  E-value=6.1e-13  Score=100.39  Aligned_cols=111  Identities=20%  Similarity=0.262  Sum_probs=72.7

Q ss_pred             CCCcEEEEEcCCCCcceeecCccccCccccceeeeccCccee--eCChhhcCCCCCcEEEccCcccccCCCcc-ccCC--
Q 035490           30 RHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG--EIPREIGNLFSLETLMITDNSFSGLMPTN-LSRC--  104 (142)
Q Consensus        30 ~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~p~~-~~~l--  104 (142)
                      ..++++.|++++|. +.+..|..+..+++|+.|++++|.+++  .+|..+..+++|+.+++++|.+.+.+|.. +..+  
T Consensus       351 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          351 SPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             CCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            33677888888887 777677777777777888887777774  22344667777777777777776534432 3333  


Q ss_pred             --------------------CCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          105 --------------------SNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       105 --------------------~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                                          ++|+.|++++|+++ .+|..+..+++|+.|++++|.|+
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence                                35556666666665 55555556677777777777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.41  E-value=7.6e-13  Score=92.56  Aligned_cols=102  Identities=24%  Similarity=0.373  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .++++.|++++|. +.+  .+.+..+++|++|++++|.+.+ + +.+..+++|+.+++++|.++..  ..+..+++|+.|
T Consensus        89 l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  161 (291)
T 1h6t_A           89 LKNLGWLFLDENK-VKD--LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL  161 (291)
T ss_dssp             CTTCCEEECCSSC-CCC--GGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCCCEEECCCCc-CCC--ChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE
Confidence            3556666666665 553  1235555556666666665552 2 2344555555555555555422  334445555555


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++++|+++ .++. +..+++|+.|++++|.|
T Consensus       162 ~L~~N~l~-~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          162 SLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             ECCSSCCC-CCGG-GTTCTTCCEEECCSSCC
T ss_pred             EccCCccc-cchh-hcCCCccCEEECCCCcC
Confidence            55555554 2222 44444555555554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=103.10  Aligned_cols=110  Identities=25%  Similarity=0.223  Sum_probs=94.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|++++|. +.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.++++.|.+....+..+..+++|+.|+
T Consensus       266 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            578999999998 8888888888899999999999999977788888899999999999999877778888899999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|++.+..+..+..+++|+.|++++|.++
T Consensus       345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             CCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            9999988544556788889999999988763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.41  E-value=1.8e-12  Score=90.64  Aligned_cols=100  Identities=20%  Similarity=0.307  Sum_probs=51.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+.  +.+..+++|+.|++++|.+++ + +.+..+++|+.+++++|.+.+. +. +..+++|+.|+
T Consensus       112 ~~L~~L~L~~n~-i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~  184 (291)
T 1h6t_A          112 KKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLY  184 (291)
T ss_dssp             TTCCEEECTTSC-CCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-CCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEE
Confidence            455555555555 4432  334455555555555555552 2 3445555555555555555532 22 44555555555


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      +++|.++ .++ .+..+++|+.|++++|+
T Consensus       185 L~~N~i~-~l~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          185 LSKNHIS-DLR-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CCSSCCC-BCG-GGTTCTTCSEEEEEEEE
T ss_pred             CCCCcCC-CCh-hhccCCCCCEEECcCCc
Confidence            5555555 333 24455555555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.40  E-value=1e-12  Score=89.19  Aligned_cols=108  Identities=18%  Similarity=0.174  Sum_probs=79.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeecc-CcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCc--
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIAD-NSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI--  108 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~--  108 (142)
                      ++++.|++++|..++...+..+..+++|++|++++ |.++...+..+..+++|+.+++++|.+++ +|. +..+++|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            77888888888425555555777888888888887 88885555667788888888888888874 565 66667776  


Q ss_pred             -EEEccCc-eeeecCchhhhCCCCCC-EEEcccccC
Q 035490          109 -AFHANNN-KLAGEIPEEIGCLFKLQ-KLSIRRNLL  141 (142)
Q Consensus       109 -~l~l~~n-~~~~~~p~~~~~~~~L~-~L~l~~n~i  141 (142)
                       .+++++| .+++..+..+..+++|+ .|++++|.|
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence             8888887 77733334567777777 888877765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=8.5e-13  Score=98.35  Aligned_cols=106  Identities=20%  Similarity=0.212  Sum_probs=93.0

Q ss_pred             CcEEEEEcCCCCcceeecCcccc-CccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++|+.|++++|. +.+..|..+. .++.|+.|++++|.+++. + ....+++|+.+++++|.+++ +|..+..+++|+.|
T Consensus       144 ~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L  219 (487)
T 3oja_A          144 SRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (487)
T ss_dssp             SSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             CCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence            789999999999 9988887776 789999999999999955 3 24468999999999999995 45668889999999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ++++|.++ .+|..+..+++|+.|++++|.+.
T Consensus       220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             EecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence            99999999 57888888999999999999863

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.39  E-value=1.4e-12  Score=90.01  Aligned_cols=100  Identities=23%  Similarity=0.352  Sum_probs=52.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+  +..+++|+.|++++|.++ .++.. .. .+|+.+++++|.+++ + ..+..+++|+.|+
T Consensus        63 ~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~  134 (263)
T 1xeu_A           63 TNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILS  134 (263)
T ss_dssp             TTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEE
T ss_pred             CCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccCCccCC-C-hhhcCcccccEEE
Confidence            556666666666 554322  555666666666666665 23321 12 455555555555542 2 2355555555555


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+++ .++ .+..+++|+.|++++|.|
T Consensus       135 Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          135 IRNNKLK-SIV-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             CTTSCCC-BCG-GGGGCTTCCEEECTTSCC
T ss_pred             CCCCcCC-CCh-HHccCCCCCEEECCCCcC
Confidence            5555555 332 344555555555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.39  E-value=2e-12  Score=91.08  Aligned_cols=80  Identities=16%  Similarity=0.361  Sum_probs=32.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+.  +.+..+++|++|++++|.+++ ++ .+..+++|+.+++++|.+++. +. +..+++|+.|+
T Consensus        85 ~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           85 TKITELELSGNP-LKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS  157 (308)
T ss_dssp             CSCCEEECCSCC-CSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred             CCCCEEEccCCc-CCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence            444444444444 4321  123444444444444444442 22 133444444444444444321 11 33334444444


Q ss_pred             ccCceee
Q 035490          112 ANNNKLA  118 (142)
Q Consensus       112 l~~n~~~  118 (142)
                      +++|+++
T Consensus       158 l~~n~l~  164 (308)
T 1h6u_A          158 IGNAQVS  164 (308)
T ss_dssp             CCSSCCC
T ss_pred             ccCCcCC
Confidence            4444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.39  E-value=1.8e-13  Score=96.47  Aligned_cols=108  Identities=15%  Similarity=0.153  Sum_probs=45.4

Q ss_pred             cEEEEEcCCCCcceeecCccccCccccceeeeccCcceee--CChhh--cCCCCCcEEEccCcccccC--CC-ccccCCC
Q 035490           33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE--IPREI--GNLFSLETLMITDNSFSGL--MP-TNLSRCS  105 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~l~l~~n~~~~~--~p-~~~~~l~  105 (142)
                      +++.|++++|. +.+..+..+..+++|++|++++|.+.+.  .+..+  ..+++|+.+++++|.++..  ++ ..+..++
T Consensus       150 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          150 GLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            34444444444 4433334444444444444444444322  11222  3444444444444444310  01 1122344


Q ss_pred             CCcEEEccCceeeecCc-hhhhCCCCCCEEEcccccC
Q 035490          106 NLIAFHANNNKLAGEIP-EEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       106 ~L~~l~l~~n~~~~~~p-~~~~~~~~L~~L~l~~n~i  141 (142)
                      +|+.|++++|++++..| ..+..+++|+.|++++|.|
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence            55555555555543222 2233344555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.39  E-value=8.4e-13  Score=93.60  Aligned_cols=108  Identities=15%  Similarity=0.131  Sum_probs=75.5

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.++ .+|..+..+++|+.++
T Consensus       193 ~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          193 ETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             SSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred             CCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence            467777777777 77666667777777888888888777555556777778888888888777 5677777777788888


Q ss_pred             ccCceeeecCchhhhC------CCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGC------LFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~------~~~L~~L~l~~n~i  141 (142)
                      +++|++++.-+..+..      ...++.+++.+|++
T Consensus       271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             CCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            8887777332333332      24567777777754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.39  E-value=2.4e-12  Score=90.63  Aligned_cols=101  Identities=25%  Similarity=0.394  Sum_probs=49.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+. + .+..+++|++|++++|.+++ ++. +..+++|+.+++++|.++. ++. +..+++|+.|+
T Consensus       107 ~~L~~L~l~~n~-l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  179 (308)
T 1h6u_A          107 QSIKTLDLTSTQ-ITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLK  179 (308)
T ss_dssp             TTCCEEECTTSC-CCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred             CCCCEEECCCCC-CCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEE
Confidence            556666666665 5532 2 24555555555555555552 222 4455555555555555542 222 44445555555


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+++ .++. +..+++|+.|++++|.|
T Consensus       180 l~~n~l~-~~~~-l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          180 ADDNKIS-DISP-LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             CCSSCCC-CCGG-GGGCTTCCEEECTTSCC
T ss_pred             CCCCccC-cChh-hcCCCCCCEEEccCCcc
Confidence            5555554 2222 34444444455444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.38  E-value=9.9e-13  Score=99.71  Aligned_cols=113  Identities=22%  Similarity=0.298  Sum_probs=93.0

Q ss_pred             ceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCC-C
Q 035490           20 GQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLM-P   98 (142)
Q Consensus        20 ~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~-p   98 (142)
                      +...++.-....++|+.|++++|. +. .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |
T Consensus       451 n~l~~lp~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p  526 (567)
T 1dce_A          451 KDLTVLCHLEQLLLVTHLDLSHNR-LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI  526 (567)
T ss_dssp             SCCSSCCCGGGGTTCCEEECCSSC-CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred             CCCCCCcCccccccCcEeecCccc-cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc
Confidence            334444333334789999999999 88 778899999999999999999994 77 8999999999999999999665 8


Q ss_pred             ccccCCCCCcEEEccCceeeecCch---hhhCCCCCCEEEc
Q 035490           99 TNLSRCSNLIAFHANNNKLAGEIPE---EIGCLFKLQKLSI  136 (142)
Q Consensus        99 ~~~~~l~~L~~l~l~~n~~~~~~p~---~~~~~~~L~~L~l  136 (142)
                      ..+..+++|+.|++++|.+++..|.   .+..+++|+.|++
T Consensus       527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999999999999999844332   2345789999874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2.2e-12  Score=83.91  Aligned_cols=87  Identities=16%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|++++|. +.+..|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.++...+..+..+++|+.++
T Consensus        33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            779999999999 9988788899999999999999999954444568899999999999999955444588999999999


Q ss_pred             ccCceeee
Q 035490          112 ANNNKLAG  119 (142)
Q Consensus       112 l~~n~~~~  119 (142)
                      +++|.+..
T Consensus       112 L~~N~~~c  119 (174)
T 2r9u_A          112 LYNNPWDC  119 (174)
T ss_dssp             CCSSCBCT
T ss_pred             eCCCCccc
Confidence            99999974

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=5.9e-13  Score=93.66  Aligned_cols=109  Identities=15%  Similarity=0.151  Sum_probs=74.3

Q ss_pred             CcEEEEEcCCCCcceeecCccc--cCccccceeeeccCcceeeCC----hhhcCCCCCcEEEccCcccccCCCccccCCC
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYV--GNLSFLRHINIADNSFHGEIP----REIGNLFSLETLMITDNSFSGLMPTNLSRCS  105 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~  105 (142)
                      .++++|++++|. +.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|+.++++.|.+....+..+..++
T Consensus        91 ~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            348888888888 887777776  778888888888888875443    2234577788888888888766566777777


Q ss_pred             CCcEEEccCceeeec--Cc--hhhhCCCCCCEEEcccccC
Q 035490          106 NLIAFHANNNKLAGE--IP--EEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       106 ~L~~l~l~~n~~~~~--~p--~~~~~~~~L~~L~l~~n~i  141 (142)
                      +|+.|++++|++.+.  ++  ..++.+++|+.|++++|.|
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM  209 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence            788888887776431  11  1124455566666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.37  E-value=2.6e-12  Score=91.34  Aligned_cols=105  Identities=28%  Similarity=0.388  Sum_probs=84.6

Q ss_pred             CCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           31 HQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .++++.|++++|. +.+..+  +..+++|++|++++|.+++ + +.+..+++|+.+++++|.++. + ..+..+++|+.+
T Consensus       220 ~~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L  292 (347)
T 4fmz_A          220 MTRLNSLKIGNNK-ITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL  292 (347)
T ss_dssp             CTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             CCcCCEEEccCCc-cCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence            3678888888888 775433  7788888999999888873 3 467788899999999998874 3 457788899999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ++++|++++..+..+..+++|+.|++++|+++
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            99999998666777888999999999999864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.35  E-value=2.2e-13  Score=95.83  Aligned_cols=61  Identities=23%  Similarity=0.347  Sum_probs=33.4

Q ss_pred             cCCCCCcEEEccCcccccCCCccccCC---CCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           78 GNLFSLETLMITDNSFSGLMPTNLSRC---SNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        78 ~~l~~L~~l~l~~n~~~~~~p~~~~~l---~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ..+++|+.+++++|.+.+..|..+..+   ++|+.|++++|+++ .+|..+.  ++|+.|++++|+|
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l  284 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL  284 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence            344555566666666554445444443   45666666666665 4554432  4566666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.34  E-value=4.2e-12  Score=96.93  Aligned_cols=82  Identities=27%  Similarity=0.447  Sum_probs=33.3

Q ss_pred             ccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCC
Q 035490           53 VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ  132 (142)
Q Consensus        53 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~  132 (142)
                      +..+++|+.|++++|.+.+ + +.+..+++|+.|+++.|.+...  ..+..+++|+.|++++|.+.+..|  +..+++|+
T Consensus       105 l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~  178 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ  178 (605)
T ss_dssp             STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence            3344444444444444442 2 2233444444444444444321  233444444444444444442211  33344444


Q ss_pred             EEEccccc
Q 035490          133 KLSIRRNL  140 (142)
Q Consensus       133 ~L~l~~n~  140 (142)
                      .|++++|.
T Consensus       179 ~L~Ls~N~  186 (605)
T 1m9s_A          179 NLYLSKNH  186 (605)
T ss_dssp             EEECCSSC
T ss_pred             EEECcCCC
Confidence            44444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.34  E-value=3.2e-12  Score=97.57  Aligned_cols=114  Identities=18%  Similarity=0.292  Sum_probs=93.2

Q ss_pred             CceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC
Q 035490           19 LGQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP   98 (142)
Q Consensus        19 ~~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p   98 (142)
                      .|...++......++|+.|++++|. +.+.  +.+..+++|+.|++++|.+++ + ..+..+++|+.|+++.|.+.+..|
T Consensus        96 ~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           96 ENKIKDLSSLKDLKKLKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SSCCCCCTTSTTCTTCCEEECTTSC-CCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCCChhhccCCCCCEEEecCCC-CCCC--ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh
Confidence            3344444434444789999999998 8753  468889999999999999994 4 578899999999999999986544


Q ss_pred             ccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           99 TNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        99 ~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                        +..+++|+.|++++|++. .++ .+..+++|+.|++++|.+
T Consensus       171 --l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSEEE
T ss_pred             --hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCCcC
Confidence              888999999999999998 554 588899999999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=1.8e-12  Score=100.83  Aligned_cols=91  Identities=21%  Similarity=0.338  Sum_probs=80.0

Q ss_pred             cCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCC
Q 035490           49 LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCL  128 (142)
Q Consensus        49 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~  128 (142)
                      .+..+..+..|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.|+ .+|..++.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3566788899999999999999 88888889999999999999999 88999999999999999999999 889999999


Q ss_pred             CCCCEEEcccccCC
Q 035490          129 FKLQKLSIRRNLLT  142 (142)
Q Consensus       129 ~~L~~L~l~~n~is  142 (142)
                      ++|+.|+|++|.|+
T Consensus       293 ~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT  306 (727)
T ss_dssp             TTCSEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC
Confidence            99999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.32  E-value=1.2e-11  Score=85.30  Aligned_cols=101  Identities=21%  Similarity=0.316  Sum_probs=86.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.. ++ .+..+++|+.|++++|.++ .+++ +..+++|+.+++++|.+++ ++.. .. ++|+.|+
T Consensus        41 ~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~  112 (263)
T 1xeu_A           41 SGVQNFNGDNSN-IQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF  112 (263)
T ss_dssp             TTCSEEECTTSC-CCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred             CcCcEEECcCCC-ccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence            789999999998 874 44 6888999999999999999 4554 8899999999999999984 4543 33 8999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|+++ .++ .+..+++|+.|++++|.|+
T Consensus       113 L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A          113 LDNNELR-DTD-SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CCSSCCS-BSG-GGTTCTTCCEEECTTSCCC
T ss_pred             ccCCccC-CCh-hhcCcccccEEECCCCcCC
Confidence            9999998 554 5888999999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=1.2e-11  Score=88.01  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=81.8

Q ss_pred             CceeeeeEecCC-----------CCcEEEEEcCC-CCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEE
Q 035490           19 LGQWTGVTCAHR-----------HQKVAKLDLRK-YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETL   86 (142)
Q Consensus        19 ~~~~~g~~~~~~-----------~~~l~~L~l~~-n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l   86 (142)
                      .|.+..+.|...           ..+|+.|++++ |. +.+..+..|..+++|+.|++++|.+++..|..|..+++|+.|
T Consensus         7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A            7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            366666666544           25699999996 88 998777889999999999999999998888889999999999


Q ss_pred             EccCcccccCCCccccCCCCCcEEEccCceeee
Q 035490           87 MITDNSFSGLMPTNLSRCSNLIAFHANNNKLAG  119 (142)
Q Consensus        87 ~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~  119 (142)
                      ++++|.+++..+..+..+. |+.|++.+|.+..
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999999954344455444 9999999999974

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=6.8e-14  Score=92.64  Aligned_cols=103  Identities=23%  Similarity=0.308  Sum_probs=83.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+ +| .+..+++|+.|++++|.++ .+|..+..+++|+.+++++|.+++ +| .+..+++|+.++
T Consensus        48 ~~L~~L~ls~n~-l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           48 KACKHLALSTNN-IEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCSEEECSEEE-ESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCEEECCCCC-Ccc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            678999999998 776 55 7788889999999999988 777777777889999999998874 44 577778899999


Q ss_pred             ccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+++ .++.  .+..+++|+.|++++|.+
T Consensus       122 l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCCcCC-chhHHHHHhcCCCCCEEEecCCcc
Confidence            9999888 4443  577888899999988865

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.27  E-value=1.2e-11  Score=91.44  Aligned_cols=101  Identities=21%  Similarity=0.359  Sum_probs=48.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+  +..+++|+.|++++|.+++..+  +..+++|+.+++++|.+++.  ..+..+++|+.++
T Consensus       287 ~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  359 (466)
T 1o6v_A          287 TALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS  359 (466)
T ss_dssp             TTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             CccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence            344444444444 333211  3444445555555555443222  34455555555555555432  2344555555555


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++..|  +..+++|+.|++++|.+
T Consensus       360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          360 AGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             CCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            55555553332  45555566666655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.27  E-value=3.3e-12  Score=96.86  Aligned_cols=114  Identities=24%  Similarity=0.323  Sum_probs=66.5

Q ss_pred             cccCcCCCCCc-----eeeee-EecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCC
Q 035490           10 TTSLNNSINLG-----QWTGV-TCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSL   83 (142)
Q Consensus        10 ~~~~~~~~~~~-----~~~g~-~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (142)
                      +..|......|     .|.++ .|..  .+++.|++++|. +.+ +|..+  +++|+.|++++|.++ .+|   ..+++|
T Consensus        33 l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~-L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L  102 (571)
T 3cvr_A           33 WDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLN-LSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASL  102 (571)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSC-CSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred             HHHHhccCCccccccchhhhcccccc--CCccEEEeCCCC-CCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence            45676666667     67777 5653  467777777777 665 55544  256677777777766 555   345566


Q ss_pred             cEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           84 ETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        84 ~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +.+++++|.+++ +|. +..  +|+.|++++|+++ .+|.   .+++|+.|++++|.|
T Consensus       103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l  152 (571)
T 3cvr_A          103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE---LPALLEYINADNNQL  152 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred             CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC---cCccccEEeCCCCcc
Confidence            666666666653 444 332  5555555555555 2443   334444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.26  E-value=6.5e-14  Score=92.75  Aligned_cols=105  Identities=20%  Similarity=0.324  Sum_probs=86.7

Q ss_pred             CcEEEEEcCCCCcceeecCc------cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCC
Q 035490           32 QKVAKLDLRKYQSLRGFLSP------YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCS  105 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~  105 (142)
                      ..++.++++.+. +.+..|.      .+..+++|+.|++++|.+++ +| .+..+++|+.+++++|.+. .+|..+..++
T Consensus        18 ~~l~~l~l~~~~-l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVVATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TCCCCTTCSEEE-CCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             ccccCcchheeE-eccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            345555555555 5555554      78889999999999999994 77 8889999999999999998 6787777778


Q ss_pred             CCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          106 NLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       106 ~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +|+.|++++|+++ .+| .+..+++|+.|++++|.|+
T Consensus        94 ~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A           94 TLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECC
T ss_pred             cCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCC
Confidence            9999999999998 555 6788899999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.25  E-value=2.4e-11  Score=89.82  Aligned_cols=101  Identities=25%  Similarity=0.370  Sum_probs=53.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +.+..+  +..+++|+.|++++|.+.+ ++. +..+++|+.+++++|.+.+..|  +..+++|+.++
T Consensus       265 ~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          265 TKLTELKLGANQ-ISNISP--LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             TTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             CCCCEEECCCCc-cCcccc--ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence            445555555554 443222  4445555555555555552 221 4455566666666665553322  45556666666


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|++++ + ..+..+++|+.|++++|.+
T Consensus       338 l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          338 FYNNKVSD-V-SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             CCSSCCCC-C-GGGTTCTTCCEEECCSSCC
T ss_pred             CCCCccCC-c-hhhccCCCCCEEeCCCCcc
Confidence            66666652 2 3455666677777766655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.24  E-value=3e-11  Score=91.69  Aligned_cols=97  Identities=23%  Similarity=0.309  Sum_probs=68.3

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCC----
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNL----  107 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L----  107 (142)
                      ++|+.|++++|. +++ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.+++++|.++ .+|. +..  +|    
T Consensus       140 ~~L~~L~Ls~N~-l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~  206 (571)
T 3cvr_A          140 ALLEYINADNNQ-LTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE  206 (571)
T ss_dssp             TTCCEEECCSSC-CSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred             ccccEEeCCCCc-cCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence            456666666666 554 333   35667777777777773 555 44  67888888888887 5666 443  66    


Q ss_pred             ---cEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          108 ---IAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       108 ---~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                         +.|++++|+++ .+|..+..+++|+.|++++|+|+
T Consensus       207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence               88899999888 78887777889999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.23  E-value=2.5e-12  Score=92.93  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=79.5

Q ss_pred             CcEEEEEcCCCCccee-----ecCccccCccccceeeeccCcce----eeCChhhcCCCCCcEEEccCcccccC----CC
Q 035490           32 QKVAKLDLRKYQSLRG-----FLSPYVGNLSFLRHINIADNSFH----GEIPREIGNLFSLETLMITDNSFSGL----MP   98 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~l~l~~n~~~~~----~p   98 (142)
                      ++++.|++++|. +..     ..+..+..+++|+.|++++|.++    ..++..+..+++|+.+++++|.++..    ++
T Consensus       187 ~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          187 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            567888888887 662     23336677788888888888875    45666777788888888888887643    34


Q ss_pred             cccc--CCCCCcEEEccCceeee----cCchhh-hCCCCCCEEEcccccCC
Q 035490           99 TNLS--RCSNLIAFHANNNKLAG----EIPEEI-GCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        99 ~~~~--~l~~L~~l~l~~n~~~~----~~p~~~-~~~~~L~~L~l~~n~is  142 (142)
                      ..+.  .+++|+.|++++|.++.    .+|..+ ..+++|+.|++++|.|+
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            4453  37788888888888885    366665 55788888888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.22  E-value=5.4e-11  Score=88.04  Aligned_cols=97  Identities=18%  Similarity=0.245  Sum_probs=43.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +++. | .+..+++|+.|++++|.+++ ++  +..+++|+.+++++|.+++. +  +..+++|+.|+
T Consensus        42 ~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            444555555554 4432 2 34444455555555554442 22  34444444555544444421 1  34444444444


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEccccc
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      +++|+++ .++  ++.+++|+.|++++|.
T Consensus       113 L~~N~l~-~l~--~~~l~~L~~L~l~~N~  138 (457)
T 3bz5_A          113 CDTNKLT-KLD--VSQNPLLTYLNCARNT  138 (457)
T ss_dssp             CCSSCCS-CCC--CTTCTTCCEEECTTSC
T ss_pred             CCCCcCC-eec--CCCCCcCCEEECCCCc
Confidence            4444444 222  3344444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.22  E-value=5e-12  Score=89.46  Aligned_cols=107  Identities=17%  Similarity=0.241  Sum_probs=51.4

Q ss_pred             CcEEEEEcCCCCcceee-cCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCc-ccccC-CCccccCCCCCc
Q 035490           32 QKVAKLDLRKYQSLRGF-LSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDN-SFSGL-MPTNLSRCSNLI  108 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n-~~~~~-~p~~~~~l~~L~  108 (142)
                      ++++.|++++|. +.+. ++..+..+++|++|++++|.+++..+..+..+++|+.+++++| .+++. ++..+..+++|+
T Consensus        93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            445555555554 4433 3344444555555555555554444444445555555555555 33321 233344455555


Q ss_pred             EEEccCc-eeeec-CchhhhCCC-CCCEEEcccc
Q 035490          109 AFHANNN-KLAGE-IPEEIGCLF-KLQKLSIRRN  139 (142)
Q Consensus       109 ~l~l~~n-~~~~~-~p~~~~~~~-~L~~L~l~~n  139 (142)
                      .|++++| .+++. ++..+..++ +|+.|++++|
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            5555555 44422 333444455 5555555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.21  E-value=3.3e-11  Score=86.14  Aligned_cols=100  Identities=17%  Similarity=0.153  Sum_probs=78.0

Q ss_pred             CCceeeeeEecCCC---------CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCCh-hhcCCCCCcE-E
Q 035490           18 NLGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPR-EIGNLFSLET-L   86 (142)
Q Consensus        18 ~~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~-l   86 (142)
                      ..|.++.+.|....         .++++|++++|. ++...+..|..+++|++|++++|.+.+.++. .+..++++.. +
T Consensus         7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X            7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            34667777776422         579999999999 8865556789999999999999998766654 4667777665 4


Q ss_pred             EccCcccccCCCccccCCCCCcEEEccCceee
Q 035490           87 MITDNSFSGLMPTNLSRCSNLIAFHANNNKLA  118 (142)
Q Consensus        87 ~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~  118 (142)
                      .+..|++....|+.+..+++|+.+++++|++.
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             cccCCcccccCchhhhhccccccccccccccc
Confidence            56678888666777888899999999988886

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.20  E-value=2.1e-12  Score=91.45  Aligned_cols=106  Identities=12%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceee-CChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGE-IPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      +.++.|++++|. +.+..+. +..+++|++|++++|.+++. ++..+..+++|+.+++++|.+++..+..+..+++|+.|
T Consensus        70 ~~l~~L~l~~n~-l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSF-MDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCE-ECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCcc-ccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            345555555555 5443332 34455555556555555433 44445555555666555555544444445555555556


Q ss_pred             EccCc-eeeec-CchhhhCCCCCCEEEcccc
Q 035490          111 HANNN-KLAGE-IPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       111 ~l~~n-~~~~~-~p~~~~~~~~L~~L~l~~n  139 (142)
                      ++++| .+++. ++..+..+++|+.|++++|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            55555 34421 3444455555555555555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.16  E-value=8.2e-12  Score=89.63  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             cEEEEEcCCCCcceeecCccccCc-----cccceeeeccCcceeeCChh----hcCC-CCCcEEEccCcccccCCCccc-
Q 035490           33 KVAKLDLRKYQSLRGFLSPYVGNL-----SFLRHINIADNSFHGEIPRE----IGNL-FSLETLMITDNSFSGLMPTNL-  101 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~----~~~l-~~L~~l~l~~n~~~~~~p~~~-  101 (142)
                      +++.|++++|. +.+..+..+..+     +.|++|++++|.+++..+..    +..+ ++|+.+++++|.++...+..+ 
T Consensus        52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            56777777776 665544444443     66777777777766444432    2233 567777777777664433222 


Q ss_pred             ---cC-CCCCcEEEccCceeeec----CchhhhCCC-CCCEEEcccccC
Q 035490          102 ---SR-CSNLIAFHANNNKLAGE----IPEEIGCLF-KLQKLSIRRNLL  141 (142)
Q Consensus       102 ---~~-l~~L~~l~l~~n~~~~~----~p~~~~~~~-~L~~L~l~~n~i  141 (142)
                         .. ..+|+.|++++|.++..    ++..+..++ +|+.|++++|.|
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence               22 24677777777776632    223334443 677777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.15  E-value=2.2e-10  Score=87.78  Aligned_cols=77  Identities=23%  Similarity=0.365  Sum_probs=63.0

Q ss_pred             cccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEc
Q 035490           57 SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSI  136 (142)
Q Consensus        57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l  136 (142)
                      ++|+.|++++|.++ .+|   ..+++|+.+++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            56778888888777 355   35578888888888887 5565   5678999999999999 88888999999999999


Q ss_pred             ccccCC
Q 035490          137 RRNLLT  142 (142)
Q Consensus       137 ~~n~is  142 (142)
                      ++|+|+
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.14  E-value=2.7e-10  Score=84.32  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             ccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCC
Q 035490           53 VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ  132 (142)
Q Consensus        53 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~  132 (142)
                      +..+++|+.|++++|.+++ +|  +..+++|+.++++.|.+++.   .+..+++|+.+++++|++++ +|  ++.+++|+
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~  236 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT  236 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred             cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence            3444555555555555552 33  44555555555555555532   24555666666666666663 44  55556666


Q ss_pred             EEEcccccC
Q 035490          133 KLSIRRNLL  141 (142)
Q Consensus       133 ~L~l~~n~i  141 (142)
                      .|++++|.+
T Consensus       237 ~L~l~~N~l  245 (457)
T 3bz5_A          237 YFDCSVNPL  245 (457)
T ss_dssp             EEECCSSCC
T ss_pred             EEEeeCCcC
Confidence            666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.13  E-value=1.1e-11  Score=89.53  Aligned_cols=108  Identities=18%  Similarity=0.272  Sum_probs=53.2

Q ss_pred             cEEEEEcCCCCcce-eecC---ccccCccccceeeeccCcceee-----CChhhcCCCCCcEEEccCcccc----cCCCc
Q 035490           33 KVAKLDLRKYQSLR-GFLS---PYVGNLSFLRHINIADNSFHGE-----IPREIGNLFSLETLMITDNSFS----GLMPT   99 (142)
Q Consensus        33 ~l~~L~l~~n~~~~-~~~~---~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~l~l~~n~~~----~~~p~   99 (142)
                      +++.|++++|. +. ..++   ..+..++.|++|++++|.+...     .+..+..+++|+.+++++|.++    ..+|.
T Consensus       160 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          160 PLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            44555555554 43 1122   2333445555555555555421     1224445555666666666553    23444


Q ss_pred             cccCCCCCcEEEccCceeeec----CchhhhC--CCCCCEEEcccccC
Q 035490          100 NLSRCSNLIAFHANNNKLAGE----IPEEIGC--LFKLQKLSIRRNLL  141 (142)
Q Consensus       100 ~~~~l~~L~~l~l~~n~~~~~----~p~~~~~--~~~L~~L~l~~n~i  141 (142)
                      .+..+++|+.|++++|.+++.    ++..+..  +++|+.|++++|.|
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            555555666666666665532    2333322  55666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.11  E-value=2.4e-11  Score=93.03  Aligned_cols=97  Identities=19%  Similarity=0.273  Sum_probs=49.3

Q ss_pred             CCcccCcCCCCCceeeee--------EecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcC
Q 035490            8 GFTTSLNNSINLGQWTGV--------TCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGN   79 (142)
Q Consensus         8 ~~~~~~~~~~~~~~~~g~--------~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~   79 (142)
                      .+...|...++.|.|+|.        .|..  ..++.|++++|. ++ .+|..+.  ++|+.|++++|.++ .+|.   .
T Consensus        10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~-L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~   79 (622)
T 3g06_A           10 AVWSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESG-LT-TLPDCLP--AHITTLVIPDNNLT-SLPA---L   79 (622)
T ss_dssp             CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSC-CS-CCCSCCC--TTCSEEEECSCCCS-CCCC---C
T ss_pred             HHHHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCC-cC-ccChhhC--CCCcEEEecCCCCC-CCCC---c
Confidence            335667777777877542        1211  335566666665 55 3444333  45555555555555 3443   3


Q ss_pred             CCCCcEEEccCcccccCCCccccCCCCCcEEEccCceee
Q 035490           80 LFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA  118 (142)
Q Consensus        80 l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~  118 (142)
                      +++|+.|++++|.++ .+|.   .+++|+.|++++|.++
T Consensus        80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            445555555555554 2333   2344444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.09  E-value=4e-11  Score=86.04  Aligned_cols=110  Identities=18%  Similarity=0.201  Sum_probs=87.1

Q ss_pred             CcEEEEEcCCCCcceeecC----ccccCcc-ccceeeeccCcceeeCChhhcCC-----CCCcEEEccCcccccCCCcc-
Q 035490           32 QKVAKLDLRKYQSLRGFLS----PYVGNLS-FLRHINIADNSFHGEIPREIGNL-----FSLETLMITDNSFSGLMPTN-  100 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~p~~-  100 (142)
                      ++++.|++++|. +.+..+    ..+..++ +|++|++++|.+++..+..+..+     ++|+.+++++|.++...+.. 
T Consensus        22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            569999999999 887655    6677788 89999999999997666666664     89999999999998665543 


Q ss_pred             ---ccCC-CCCcEEEccCceeeecCchhh----hC-CCCCCEEEcccccCC
Q 035490          101 ---LSRC-SNLIAFHANNNKLAGEIPEEI----GC-LFKLQKLSIRRNLLT  142 (142)
Q Consensus       101 ---~~~l-~~L~~l~l~~n~~~~~~p~~~----~~-~~~L~~L~l~~n~is  142 (142)
                         +..+ ++|+.|++++|+++...+..+    .. ..+|+.|++++|.|+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence               4444 799999999999985444333    33 258999999999863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.06  E-value=7.6e-10  Score=81.84  Aligned_cols=56  Identities=29%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS   94 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~   94 (142)
                      ++++.|++++|. +.+ +| .+..+++|++|++++|.+++ +|..   ..+|+.+++++|.+.
T Consensus       131 ~~L~~L~L~~n~-l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~  186 (454)
T 1jl5_A          131 PLLEYLGVSNNQ-LEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE  186 (454)
T ss_dssp             TTCCEEECCSSC-CSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCC-CCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC
Confidence            456666666666 554 44 35556666666666665552 3321   124444444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.03  E-value=2e-11  Score=89.65  Aligned_cols=85  Identities=16%  Similarity=0.179  Sum_probs=48.5

Q ss_pred             ccceeeeccCcceee----CChhhcCCCCCcEEEccCcccccCCCccccC-----CCCCcEEEccCceeee----cCchh
Q 035490           58 FLRHINIADNSFHGE----IPREIGNLFSLETLMITDNSFSGLMPTNLSR-----CSNLIAFHANNNKLAG----EIPEE  124 (142)
Q Consensus        58 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~-----l~~L~~l~l~~n~~~~----~~p~~  124 (142)
                      +|++|++++|.+++.    ++..+..+++|+.+++++|.++...+..+..     .++|+.|++++|.++.    .+|..
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            455555555554432    2333444566667777666665332222221     4567777777777764    45556


Q ss_pred             hhCCCCCCEEEcccccCC
Q 035490          125 IGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       125 ~~~~~~L~~L~l~~n~is  142 (142)
                      +..+++|+.|++++|.|+
T Consensus       394 l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          394 LLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHCCCCCEEECCSSSCC
T ss_pred             HHhCCCccEEECCCCCCC
Confidence            666777777777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.02  E-value=6.4e-10  Score=79.47  Aligned_cols=104  Identities=14%  Similarity=0.060  Sum_probs=81.9

Q ss_pred             EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCC-ccccCCCCCcE-EEc
Q 035490           35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMP-TNLSRCSNLIA-FHA  112 (142)
Q Consensus        35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p-~~~~~l~~L~~-l~l  112 (142)
                      +.++.+++. ++ .+|..+  ...+++|++++|.++...+..|..+++|+.|++++|.+.+.++ ..|.+++++.. +.+
T Consensus        12 ~~v~C~~~~-Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESK-VT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTT-CC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCC-CC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            356778887 77 567655  3679999999999994334568999999999999999865555 45788888765 556


Q ss_pred             cCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          113 NNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       113 ~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ..|+++...|..|..+++|+.|++++|.|.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             cCCcccccCchhhhhccccccccccccccc
Confidence            678898555677899999999999999763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.01  E-value=1.2e-09  Score=80.86  Aligned_cols=76  Identities=26%  Similarity=0.394  Sum_probs=36.8

Q ss_pred             cccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEc
Q 035490           57 SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSI  136 (142)
Q Consensus        57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l  136 (142)
                      ++|++|++++|.+++ +| .+..+++|+.+++++|.+++ +|..+   .+|+.+++++|+++ .+| .++.+++|+.|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEEC
Confidence            345555555555552 44 35555555555555555552 33322   24445555555444 233 2444444444444


Q ss_pred             cccc
Q 035490          137 RRNL  140 (142)
Q Consensus       137 ~~n~  140 (142)
                      ++|.
T Consensus       203 ~~N~  206 (454)
T 1jl5_A          203 DNNS  206 (454)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            4443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.95  E-value=7.1e-11  Score=86.74  Aligned_cols=109  Identities=18%  Similarity=0.189  Sum_probs=49.9

Q ss_pred             CcEEEEEcCCCCcceee----cCccccCccccceeeeccCcceeeCChhhcC-----CCCCcEEEccCcccccC----CC
Q 035490           32 QKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFHGEIPREIGN-----LFSLETLMITDNSFSGL----MP   98 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~n~~~~~----~p   98 (142)
                      ++++.|++++|. ++..    ++..+..++.|++|++++|.+.+..+..+..     .++|+.+++++|.++..    ++
T Consensus       256 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          256 SRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             CCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            344444444444 4432    2333333444555555555444322222211     13555555555555432    22


Q ss_pred             ccccCCCCCcEEEccCceeeecCchhhhC-----CCCCCEEEcccccC
Q 035490           99 TNLSRCSNLIAFHANNNKLAGEIPEEIGC-----LFKLQKLSIRRNLL  141 (142)
Q Consensus        99 ~~~~~l~~L~~l~l~~n~~~~~~p~~~~~-----~~~L~~L~l~~n~i  141 (142)
                      ..+..+++|+.+++++|.+....+..+..     .++|+.|++++|.|
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            33444566666666666665322222221     44666666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.93  E-value=2.7e-10  Score=82.31  Aligned_cols=109  Identities=14%  Similarity=0.158  Sum_probs=62.3

Q ss_pred             cEEEEEcCCCCcceeecCccc-----cCccccceeeeccCcceee----CChhhcCCCCCcEEEccCcccccC----CCc
Q 035490           33 KVAKLDLRKYQSLRGFLSPYV-----GNLSFLRHINIADNSFHGE----IPREIGNLFSLETLMITDNSFSGL----MPT   99 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~p~   99 (142)
                      +++.|++++|. +.......+     ...+.|++|++++|.++..    ++..+...++|+.+++++|.++..    ++.
T Consensus       127 ~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          127 RARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             TEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             hccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            45555666555 543222222     1235567777777766531    233345566777777777776532    133


Q ss_pred             cccCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccCC
Q 035490          100 NLSRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       100 ~~~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      .+...++|+.|++++|.++..    ++..+...++|+.|++++|.|+
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            455566777777777777632    2233445567778888777763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.79  E-value=9.7e-10  Score=79.40  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=80.5

Q ss_pred             CcEEEEEcCCCCcceeecCccc-cCccccceeeeccCcceeeCChhh-----cCCCCCcEEEccCcccccC----CCccc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYV-GNLSFLRHINIADNSFHGEIPREI-----GNLFSLETLMITDNSFSGL----MPTNL  101 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~l~l~~n~~~~~----~p~~~  101 (142)
                      .+++.|++++|. +.......+ ..+.+|++|++++|.++......+     ...+.|+.+++++|.++..    ++..+
T Consensus       101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            579999999998 765433333 345678999999999875433333     2457899999999998642    33445


Q ss_pred             cCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccCC
Q 035490          102 SRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       102 ~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ...++|+.|++++|.+...    ++..+...++|+.|++++|.|+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            6788999999999998732    2445666788999999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.69  E-value=3.2e-09  Score=69.53  Aligned_cols=110  Identities=13%  Similarity=0.177  Sum_probs=84.2

Q ss_pred             CCcEEEEEcCCC-Ccceee----cCccccCccccceeeeccCcceee----CChhhcCCCCCcEEEccCcccccC----C
Q 035490           31 HQKVAKLDLRKY-QSLRGF----LSPYVGNLSFLRHINIADNSFHGE----IPREIGNLFSLETLMITDNSFSGL----M   97 (142)
Q Consensus        31 ~~~l~~L~l~~n-~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~   97 (142)
                      .+.++.|++++| . +...    +...+...+.|++|++++|.+...    +...+...++|+.|++++|.++..    +
T Consensus        35 ~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            378999999999 7 7643    334456678899999999998743    334455668899999999999843    3


Q ss_pred             CccccCCCCCcEEEc--cCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490           98 PTNLSRCSNLIAFHA--NNNKLAGE----IPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        98 p~~~~~l~~L~~l~l--~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ...+...+.|+.|++  +.|.+...    +.+.+...++|+.|++++|.|
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            456677789999999  88999743    334555668999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=1.2e-07  Score=67.05  Aligned_cols=102  Identities=19%  Similarity=0.152  Sum_probs=83.6

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCc-EEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLE-TLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      .+++.+++++|. ++......|..+.+|+.+++..| +....+..|..+.+|+ .+.+.. .++..-+..|..+++|+.+
T Consensus       226 ~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          226 PNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             CCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            679999999998 88766677888999999999988 6645556788899999 999988 6664556789999999999


Q ss_pred             EccCceeeecCchhhhCCCCCCEEEc
Q 035490          111 HANNNKLAGEIPEEIGCLFKLQKLSI  136 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L~~L~l  136 (142)
                      ++..|.++..-+..|..+++|+.+..
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999988343457888889988764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.60  E-value=3.9e-08  Score=67.99  Aligned_cols=78  Identities=17%  Similarity=0.237  Sum_probs=44.7

Q ss_pred             ccccceeeeccCccee--eCChhhcCCCCCcEEEccCcccccCCCccccCCC--CCcEEEccCceeeecCc-------hh
Q 035490           56 LSFLRHINIADNSFHG--EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCS--NLIAFHANNNKLAGEIP-------EE  124 (142)
Q Consensus        56 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~--~L~~l~l~~n~~~~~~p-------~~  124 (142)
                      +++|+.|++++|.+++  .++..+..+++|+.|++++|.+.+.  ..+..+.  +|+.|++.+|.+.+.+|       ..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            4566677777777664  3344455666677777777766632  2222222  66677777766664333       13


Q ss_pred             hhCCCCCCEEE
Q 035490          125 IGCLFKLQKLS  135 (142)
Q Consensus       125 ~~~~~~L~~L~  135 (142)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45566666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.55  E-value=1.2e-08  Score=77.09  Aligned_cols=90  Identities=13%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             ccCccccceeeeccCc--ceeeCChhhc-CCCCCcEEEccCcccccC-CCccccCCCCCcEEEccCceeeec-CchhhhC
Q 035490           53 VGNLSFLRHINIADNS--FHGEIPREIG-NLFSLETLMITDNSFSGL-MPTNLSRCSNLIAFHANNNKLAGE-IPEEIGC  127 (142)
Q Consensus        53 l~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~l~l~~n~~~~~-~p~~~~~l~~L~~l~l~~n~~~~~-~p~~~~~  127 (142)
                      +..+++|+.|++++|.  +++.....+. .+++|+.++++.|.+++. ++..+..+++|+.|++++|.++.. ++.....
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            4446677777776433  4433333333 367788888888887642 233456678899999998887643 3444566


Q ss_pred             CCCCCEEEcccccCC
Q 035490          128 LFKLQKLSIRRNLLT  142 (142)
Q Consensus       128 ~~~L~~L~l~~n~is  142 (142)
                      +++|+.|++++|+++
T Consensus       512 l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          512 LPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CSSCCEEEEESCBCC
T ss_pred             cCccCeeECcCCcCC
Confidence            788999999988764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.52  E-value=7.9e-09  Score=71.45  Aligned_cols=63  Identities=24%  Similarity=0.300  Sum_probs=50.0

Q ss_pred             cCCCCCcEEEccCccccc--CCCccccCCCCCcEEEccCceeeecCchhhhCCC--CCCEEEcccccCC
Q 035490           78 GNLFSLETLMITDNSFSG--LMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLF--KLQKLSIRRNLLT  142 (142)
Q Consensus        78 ~~l~~L~~l~l~~n~~~~--~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~--~L~~L~l~~n~is  142 (142)
                      ..++.|+.|++++|.+++  .++..+..+++|+.|++++|++.+ + ..+..+.  +|+.|++.+|++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCc
Confidence            357899999999999986  334556688999999999999984 3 2344444  8999999999873

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.38  E-value=3.1e-07  Score=69.38  Aligned_cols=62  Identities=16%  Similarity=0.142  Sum_probs=32.9

Q ss_pred             CcEEEEEcCCCCcceee----cCccccCccccceeeeccCcce----eeCChhhcCCCCCcEEEccCcccc
Q 035490           32 QKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFH----GEIPREIGNLFSLETLMITDNSFS   94 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~l~l~~n~~~   94 (142)
                      ++|+.|++++|. +.+.    ++..+..+++|++|++++|.++    +.++..+..+++|+.+++..+.+.
T Consensus       164 ~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          164 RKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             TTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             CCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            567777777776 5543    2222334556666666666654    122333344556666666555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.31  E-value=2.4e-07  Score=69.91  Aligned_cols=107  Identities=9%  Similarity=0.157  Sum_probs=66.2

Q ss_pred             CcEEEEEcCCCCcceeecCcccc-CccccceeeeccC-cceee-CChhhcCCCCCcEEEccCcccccCCCcccc----CC
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVG-NLSFLRHINIADN-SFHGE-IPREIGNLFSLETLMITDNSFSGLMPTNLS----RC  104 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~----~l  104 (142)
                      ++++.|++++|. +.+..+..+. .+++|++|++++| .++.. ++.....+++|+.+++++|.+++..+..+.    .+
T Consensus       105 ~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            567888888887 7665555554 4677888888877 44422 333344677888888888876644333232    45


Q ss_pred             CCCcEEEccCce--eee-cCchhhhCCCCCCEEEcccc
Q 035490          105 SNLIAFHANNNK--LAG-EIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       105 ~~L~~l~l~~n~--~~~-~~p~~~~~~~~L~~L~l~~n  139 (142)
                      ++|+.|+++.+.  +.. .++..+..+++|+.|++++|
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            678888887765  221 12222344577777777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.20  E-value=1e-07  Score=71.99  Aligned_cols=88  Identities=16%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             ccCccccceeeeccCcceeeCChhhcC-CCCCcEEEccCcccccCCCccc-cCCCCCcEEEccCceeeecCch-hhhCCC
Q 035490           53 VGNLSFLRHINIADNSFHGEIPREIGN-LFSLETLMITDNSFSGLMPTNL-SRCSNLIAFHANNNKLAGEIPE-EIGCLF  129 (142)
Q Consensus        53 l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~l~l~~n~~~~~~p~~~-~~l~~L~~l~l~~n~~~~~~p~-~~~~~~  129 (142)
                      +..+++|+.|++++ .+++.....+.. +++|+.++++.|.+++.....+ ..+++|+.|++++|.+++.... ....++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34456666777655 444333333433 6778888888777754322222 4567888888888887532222 334567


Q ss_pred             CCCEEEcccccC
Q 035490          130 KLQKLSIRRNLL  141 (142)
Q Consensus       130 ~L~~L~l~~n~i  141 (142)
                      +|+.|++++|++
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            888888888765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=5.1e-07  Score=58.60  Aligned_cols=86  Identities=12%  Similarity=0.108  Sum_probs=64.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCc-ceeeCChhhcCC----CCCcEEEccCcc-cccCCCccccCCC
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNS-FHGEIPREIGNL----FSLETLMITDNS-FSGLMPTNLSRCS  105 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~l~l~~n~-~~~~~p~~~~~l~  105 (142)
                      .+|+.|+++++. ++...-..+..+++|++|++++|. +++..-..+..+    ++|+.|++++|. ++...-..+..++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            579999999998 887766778889999999999986 664433445554    369999998875 6644334566788


Q ss_pred             CCcEEEccCce-ee
Q 035490          106 NLIAFHANNNK-LA  118 (142)
Q Consensus       106 ~L~~l~l~~n~-~~  118 (142)
                      +|+.|++++.. ++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            99999998764 54

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.18  E-value=3.3e-07  Score=65.98  Aligned_cols=62  Identities=16%  Similarity=0.203  Sum_probs=30.0

Q ss_pred             CCCCcEEEccCcccccCCCccc---cCCCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490           80 LFSLETLMITDNSFSGLMPTNL---SRCSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        80 l~~L~~l~l~~n~~~~~~p~~~---~~l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+.|++.+|.+....+..+   ..++.|+.|+++.|.+...    ++..+..+++|+.|+++.|.|
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            3455555555554432111111   1345566666666665532    122223445666666666655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=4.4e-06  Score=58.98  Aligned_cols=84  Identities=10%  Similarity=0.046  Sum_probs=69.0

Q ss_pred             ccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCc-EEEccCceeeecCchhhhCCCCCCEE
Q 035490           56 LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLI-AFHANNNKLAGEIPEEIGCLFKLQKL  134 (142)
Q Consensus        56 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~-~l~l~~n~~~~~~p~~~~~~~~L~~L  134 (142)
                      ++.|+.++++.|.++...+..|..+.+|+.+++..| +...-+..|..+.+|+ .+++.. .++..-+..|..+.+|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999998555567889999999999997 6645556799999999 999987 6652335678999999999


Q ss_pred             EcccccC
Q 035490          135 SIRRNLL  141 (142)
Q Consensus       135 ~l~~n~i  141 (142)
                      ++.+|.|
T Consensus       303 ~l~~n~i  309 (329)
T 3sb4_A          303 LATGDKI  309 (329)
T ss_dssp             EECSSCC
T ss_pred             EeCCCcc
Confidence            9988765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.17  E-value=7.2e-07  Score=58.24  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=70.8

Q ss_pred             cCccccCccccceeeeccC-cceee----CChhhcCCCCCcEEEccCcccccC----CCccccCCCCCcEEEccCceeee
Q 035490           49 LSPYVGNLSFLRHINIADN-SFHGE----IPREIGNLFSLETLMITDNSFSGL----MPTNLSRCSNLIAFHANNNKLAG  119 (142)
Q Consensus        49 ~~~~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~~~~  119 (142)
                      +...+...+.|++|++++| .+...    +...+...++|+.+++++|.+...    +...+...+.|+.|++++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3344566788999999999 87642    334566678999999999998743    23445556889999999999974


Q ss_pred             c----CchhhhCCCCCCEEEc--ccccCC
Q 035490          120 E----IPEEIGCLFKLQKLSI--RRNLLT  142 (142)
Q Consensus       120 ~----~p~~~~~~~~L~~L~l--~~n~is  142 (142)
                      .    +...+...+.|+.|++  ++|.|+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            2    3455666788999999  888874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.11  E-value=1.1e-06  Score=57.01  Aligned_cols=83  Identities=10%  Similarity=0.045  Sum_probs=62.7

Q ss_pred             cccceeeeccCcceeeCChhhcCCCCCcEEEccCcc-cccCCCccccCC----CCCcEEEccCc-eeeecCchhhhCCCC
Q 035490           57 SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNS-FSGLMPTNLSRC----SNLIAFHANNN-KLAGEIPEEIGCLFK  130 (142)
Q Consensus        57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~-~~~~~p~~~~~l----~~L~~l~l~~n-~~~~~~p~~~~~~~~  130 (142)
                      ..|+.||++++.++..--..+..+++|+.|+++.+. ++...-..+..+    ++|+.|+++++ +++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999999886655667889999999999986 654322334443    37999999986 477432345677899


Q ss_pred             CCEEEcccc
Q 035490          131 LQKLSIRRN  139 (142)
Q Consensus       131 L~~L~l~~n  139 (142)
                      |+.|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            999999886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.93  E-value=1.5e-05  Score=57.41  Aligned_cols=107  Identities=17%  Similarity=0.192  Sum_probs=67.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhc--CCCCCcEEEccC--cccccC-----CCccc-
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIG--NLFSLETLMITD--NSFSGL-----MPTNL-  101 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~l~l~~--n~~~~~-----~p~~~-  101 (142)
                      ++|+.|.++++..+  .++. + .+++|++|++..+.+.......+.  .+++|+.|++..  +...+.     +...+ 
T Consensus       172 P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          172 PLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             TTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             CCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            67888888776312  1232 3 367888888888877644333443  688999998853  221111     11122 


Q ss_pred             -cCCCCCcEEEccCceeeecCchhhh---CCCCCCEEEcccccCC
Q 035490          102 -SRCSNLIAFHANNNKLAGEIPEEIG---CLFKLQKLSIRRNLLT  142 (142)
Q Consensus       102 -~~l~~L~~l~l~~n~~~~~~p~~~~---~~~~L~~L~l~~n~is  142 (142)
                       ..+++|+.|.+..|.+....+..+.   .+++|+.|+++.|.|.
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence             2468999999998888643333332   4788999999998763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.70  E-value=0.00019  Score=52.30  Aligned_cols=88  Identities=11%  Similarity=0.026  Sum_probs=46.0

Q ss_pred             CccccCccccceeeeccCcce-----eeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchh
Q 035490           50 SPYVGNLSFLRHINIADNSFH-----GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEE  124 (142)
Q Consensus        50 ~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~  124 (142)
                      ...|..+.+|+.+++..+.+.     ...+..|..+.+|+.+.+.. .+...-...|..+.+|+.+.+..+ ++..-...
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            444555666666666555443     12234455566666666653 344333345666666666666433 33122334


Q ss_pred             hhCCCCCCEEEccccc
Q 035490          125 IGCLFKLQKLSIRRNL  140 (142)
Q Consensus       125 ~~~~~~L~~L~l~~n~  140 (142)
                      |..+ +|+.+++.+|.
T Consensus       342 F~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             SSSS-CCCEEEECCSS
T ss_pred             CCCC-CCCEEEEcCCC
Confidence            5555 66666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.40  E-value=0.00058  Score=49.67  Aligned_cols=105  Identities=8%  Similarity=0.022  Sum_probs=76.5

Q ss_pred             CcEEEEEcCCCCcce-----eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCC
Q 035490           32 QKVAKLDLRKYQSLR-----GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSN  106 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~  106 (142)
                      .+|+.+.+.++. +.     ......|..+.+|+.+++.. .+...-...|..+.+|+.+.+..+ ++..-...|..+ +
T Consensus       271 ~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          271 PELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-G  346 (401)
T ss_dssp             TTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-C
T ss_pred             CCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-C
Confidence            668888887765 43     34456788899999999984 466444567888899999999665 554455778888 9


Q ss_pred             CcEEEccCceeeecCchhhhCCC-CCCEEEccccc
Q 035490          107 LIAFHANNNKLAGEIPEEIGCLF-KLQKLSIRRNL  140 (142)
Q Consensus       107 L~~l~l~~n~~~~~~p~~~~~~~-~L~~L~l~~n~  140 (142)
                      |+.+++..|.+.......|..++ .++.+.+..+.
T Consensus       347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            99999999887733344566663 67788776653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.29  E-value=6.5e-05  Score=49.54  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             CCcEEEEEcCCC-Ccceee----cCccccCccccceeeeccCcceeeC----ChhhcCCCCCcEEEccCcccccC----C
Q 035490           31 HQKVAKLDLRKY-QSLRGF----LSPYVGNLSFLRHINIADNSFHGEI----PREIGNLFSLETLMITDNSFSGL----M   97 (142)
Q Consensus        31 ~~~l~~L~l~~n-~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~l~l~~n~~~~~----~   97 (142)
                      ...++.|+++++ . +...    +-..+..-..|++|++++|.+.+..    ...+..-.+|+.|+++.|.|+..    +
T Consensus        40 n~~L~~L~L~~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKR-VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            377999999986 5 6532    2344556678999999999988532    33444567899999999999743    2


Q ss_pred             CccccCCCCCcEEEccCc---eeee----cCchhhhCCCCCCEEEccccc
Q 035490           98 PTNLSRCSNLIAFHANNN---KLAG----EIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus        98 p~~~~~l~~L~~l~l~~n---~~~~----~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      .+.+..-..|+.|+++++   .+..    .+.+.+..-+.|+.|+++.|.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            234555567999999754   3432    234455566789999988764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.22  E-value=0.00071  Score=41.52  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=41.0

Q ss_pred             ceeeeccCcce-eeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeee
Q 035490           60 RHINIADNSFH-GEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAG  119 (142)
Q Consensus        60 ~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~  119 (142)
                      ..++.+++.++ ..+|..+  ..+++.|++++|.++..-+..|..+++|+.++|.+|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            35677777765 2455432  3468899999999985444567788889999999988853

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.91  E-value=0.00061  Score=44.88  Aligned_cols=87  Identities=11%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             ccCccccceeeeccC-ccee----eCChhhcCCCCCcEEEccCcccccC----CCccccCCCCCcEEEccCceeeec---
Q 035490           53 VGNLSFLRHINIADN-SFHG----EIPREIGNLFSLETLMITDNSFSGL----MPTNLSRCSNLIAFHANNNKLAGE---  120 (142)
Q Consensus        53 l~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~~~~~---  120 (142)
                      +..-+.|++|++++| .+..    .+...+..-.+|+.|+++.|.+...    +.+.+..-+.|+.|+|+.|.|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344577999999986 6653    2345566678899999999999843    233454557899999999999732   


Q ss_pred             -CchhhhCCCCCCEEEcccc
Q 035490          121 -IPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       121 -~p~~~~~~~~L~~L~l~~n  139 (142)
                       +.+.+..-..|+.|++++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence             2344555567999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.66  E-value=0.019  Score=41.32  Aligned_cols=101  Identities=11%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             cEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEc
Q 035490           33 KVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHA  112 (142)
Q Consensus        33 ~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l  112 (142)
                      .++.+.+.++.  .......+.....|+.+.+. +.+...-...|..+.+|+.+.+..+ ++..-...|..+.+|+.+.+
T Consensus       266 ~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          266 YLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            34445444332  22223345556667776664 3344233345666777888877654 33233456777778888877


Q ss_pred             cCceeeecC-chhhhCCCCCCEEEcccc
Q 035490          113 NNNKLAGEI-PEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       113 ~~n~~~~~~-p~~~~~~~~L~~L~l~~n  139 (142)
                      ..+ ++ .+ ...|.++.+|+.+++.++
T Consensus       342 p~s-v~-~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          342 PSS-VT-KIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred             Ccc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence            543 44 33 345777777887777665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.62  E-value=0.0011  Score=40.57  Aligned_cols=56  Identities=16%  Similarity=0.142  Sum_probs=33.8

Q ss_pred             EEEcCCCCcce-eecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccc
Q 035490           36 KLDLRKYQSLR-GFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFS   94 (142)
Q Consensus        36 ~L~l~~n~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~   94 (142)
                      .++.+++. ++ ..+|..+  ...+++|++++|.++..-+..+..++.|+.+++.+|.+.
T Consensus        12 ~v~Cs~~~-L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRG-LTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSC-CCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCC-CccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            55666665 44 2344332  234777788888777333345566777777777777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.47  E-value=0.017  Score=41.24  Aligned_cols=81  Identities=15%  Similarity=0.153  Sum_probs=39.8

Q ss_pred             ccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecC-chhhhCCCCC
Q 035490           53 VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEI-PEEIGCLFKL  131 (142)
Q Consensus        53 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~-p~~~~~~~~L  131 (142)
                      +.....|+.+.+..+ +.......+..+.+|+.+.+..+.+...-...|..+.+|+.+.+..+ ++ .+ ...|.++.+|
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L  335 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKAL  335 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCC
Confidence            344445555554332 22122234455566666666655554333345666666666666433 33 22 2345555555


Q ss_pred             CEEEc
Q 035490          132 QKLSI  136 (142)
Q Consensus       132 ~~L~l  136 (142)
                      +.+.+
T Consensus       336 ~~i~i  340 (379)
T 4h09_A          336 STISY  340 (379)
T ss_dssp             CCCCC
T ss_pred             CEEEE
Confidence            55544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.22  E-value=0.017  Score=41.56  Aligned_cols=103  Identities=13%  Similarity=0.201  Sum_probs=66.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ..|+.+.+...  +.......|.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++..-...|..+.+|+.++
T Consensus       288 ~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          288 PALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             TTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             cccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            56788877643  55455566778899999998754 55344567888899999999764 5534446799999999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +..+...   ...+.....|+.+.+..+.+
T Consensus       364 ~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          364 YSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ESSCHHH---HHTCBCCCCC----------
T ss_pred             ECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            9876543   13455567788887766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.14  E-value=0.016  Score=41.75  Aligned_cols=84  Identities=12%  Similarity=0.075  Sum_probs=49.1

Q ss_pred             cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490           52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL  131 (142)
Q Consensus        52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L  131 (142)
                      .+.....|+.+.+..+ +...-...+..+.+|+.+.+..+ ++..-...|..+.+|+.+++..+ ++..-...|..+.+|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3455666777766543 44233445666677777777543 44233456777777777777654 441223456667777


Q ss_pred             CEEEccc
Q 035490          132 QKLSIRR  138 (142)
Q Consensus       132 ~~L~l~~  138 (142)
                      +.+++..
T Consensus       369 ~~i~lp~  375 (394)
T 4fs7_A          369 KKVELPK  375 (394)
T ss_dssp             CEEEEEG
T ss_pred             CEEEECC
Confidence            7777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.66  E-value=0.064  Score=38.53  Aligned_cols=61  Identities=13%  Similarity=0.079  Sum_probs=30.5

Q ss_pred             ccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490           51 PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN  113 (142)
Q Consensus        51 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~  113 (142)
                      ..|..+.+|+.+++..+ ++..-...+..+.+|+.+.+..+ +...-...|..+.+|+.+++.
T Consensus       314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            34455555666655432 33222344555556666665544 332333455556666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.40  E-value=0.15  Score=36.30  Aligned_cols=88  Identities=19%  Similarity=0.124  Sum_probs=58.6

Q ss_pred             CccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCC
Q 035490           50 SPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLF  129 (142)
Q Consensus        50 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~  129 (142)
                      ...+.....|+.+.+..+ ++..-...+.....|+.+.+..+ +...-...|..+.+|+.+.+..+.++..-...|..+.
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            344556667777777554 44233445666778888887654 3323345688889999999987777622245688888


Q ss_pred             CCCEEEcccc
Q 035490          130 KLQKLSIRRN  139 (142)
Q Consensus       130 ~L~~L~l~~n  139 (142)
                      +|+.+.+..+
T Consensus       311 ~L~~i~lp~~  320 (379)
T 4h09_A          311 KLSSVTLPTA  320 (379)
T ss_dssp             TCCEEECCTT
T ss_pred             CCCEEEcCcc
Confidence            9999888643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 3e-07
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 55  NLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN 114
           NL  L ++ +  N+     P  + +L  L+ L   +N  S    ++L+  +N+    A +
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 115 NKLAGEIPEEIGCLFKLQKLSIRRN 139
           N+++   P  +  L ++ +L +   
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
             V +L+ L+ +  A+N         + NL ++  L    N  S L P  L+  + +   
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378

Query: 111 HANNN 115
             N+ 
Sbjct: 379 GLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 21  QWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNL 80
                       K       +   + G L   +  L FL  +N++ N+  GEIP + GNL
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 81  FSLETLMITDNSFSGLMPTNLSRCS 105
              +     +N      P  L  C+
Sbjct: 291 QRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 2e-06
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 57  SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNK 116
             L  +++ +N  +G +P+ +  L  L +L ++ N+  G +P               NNK
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 117 LAGEIP 122
                P
Sbjct: 303 CLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 90  DNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN 139
           +N   G +P  L++   L + + + N L GEIP + G L +    +   N
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 10/120 (8%)

Query: 21  QWTGVTCAHRH---------QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG 71
               V C+               A LDL+    +         NL  L  + + +N    
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 72  EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131
             P     L  LE L ++ N    L          L        K+   +   +  +  +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 72  EIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL 131
           ++P+++        L + +N  + +   +     NL      NNK++   P     L KL
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 132 QKLSIRRNLLT 142
           ++L + +N L 
Sbjct: 82  ERLYLSKNQLK 92

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 6e-04
 Identities = 14/83 (16%), Positives = 32/83 (38%)

Query: 59  LRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLA 118
              +++ +N        +  NL +L TL++ +N  S + P   +    L   + + N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 119 GEIPEEIGCLFKLQKLSIRRNLL 141
               +    L +L+        +
Sbjct: 93  ELPEKMPKTLQELRVHENEITKV 115

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 67  NSFHGEIPREIGNLFSLETLMITDNSFSG-LMPTNLSRCSNLIAFHANNNKLAGEIPEEI 125
            SF  +   E  + F ++ + ++++      +   LS+CS L        +L+  I   +
Sbjct: 32  RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 91

Query: 126 GCLFKLQKLSIRRN 139
                L +L++   
Sbjct: 92  AKNSNLVRLNLSGC 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 51  PYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF 110
            ++  L  + H++++ N      P  +  L  LE L  +DN+   +           +  
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLPRLQELLL 72

Query: 111 HANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT 142
             NN        + +    +L  L+++ N L 
Sbjct: 73  C-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.51
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.27
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.09
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.06
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.99
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.91
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.14
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.13
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.11
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.74

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=1.9e-22  Score=140.67  Aligned_cols=138  Identities=28%  Similarity=0.466  Sum_probs=121.3

Q ss_pred             CccCCCCCcccCcCCCCCc--eeeeeEecCCC--CcEEEEEcCCCCccee--ecCccccCccccceeeecc-CcceeeCC
Q 035490            2 HFHDPIGFTTSLNNSINLG--QWTGVTCAHRH--QKVAKLDLRKYQSLRG--FLSPYVGNLSFLRHINIAD-NSFHGEIP   74 (142)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~--~~l~~L~l~~n~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~   74 (142)
                      ++.|| .++..|..++|+|  .|.|++|....  .+++.|+++++. +.+  .+|+.+..+++|++|++++ |.++|.+|
T Consensus        17 ~~~~~-~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~-l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP   94 (313)
T d1ogqa_          17 DLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP   94 (313)
T ss_dssp             HTTCC-GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCC
T ss_pred             HCCCC-CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCC-CCCCCCCChHHhcCccccccccccccccccccc
Confidence            34565 3688999888998  49999998654  479999999998 876  4789999999999999986 89999999


Q ss_pred             hhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           75 REIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        75 ~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +.+..+++|+++++++|++.+..+..+..+..|+.++++.|.+.+.+|..+..++.++.+++++|.+
T Consensus        95 ~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_          95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccc
Confidence            9999999999999999999987778888889999999999999888888899999999999998865

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=1.1e-17  Score=109.07  Aligned_cols=122  Identities=18%  Similarity=0.264  Sum_probs=103.4

Q ss_pred             CceeeeeEecCCC---------CcEEEEEcCCCCcceeec-CccccCccccceeeeccCcceeeCChhhcCCCCCcEEEc
Q 035490           19 LGQWTGVTCAHRH---------QKVAKLDLRKYQSLRGFL-SPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMI   88 (142)
Q Consensus        19 ~~~~~g~~~~~~~---------~~l~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l   88 (142)
                      .|.+..+.|....         .+++.|++++|. ++... +..|..+++|++|++++|.+....+..+..++.|+.+++
T Consensus         7 ~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             EEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCC-CcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3556666665322         579999999999 87644 456788999999999999999777888899999999999


Q ss_pred             cCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           89 TDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        89 ~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++|++....+..|..+++|+.|++++|++++..+..|..+++|+++++++|.+
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            99999976677899999999999999999955566788999999999999976

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=9e-16  Score=93.44  Aligned_cols=100  Identities=22%  Similarity=0.332  Sum_probs=83.0

Q ss_pred             EEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccC
Q 035490           35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANN  114 (142)
Q Consensus        35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~  114 (142)
                      +.|++++|. ++. ++ .+..+.+|++|++++|.++ .+|+.+..+++|+.+++++|.++ .+| .+..+++|+.+++++
T Consensus         1 R~L~Ls~n~-l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKD-LTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSC-CSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCC-CCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            468899998 873 33 5788899999999999998 78888888999999999999998 444 588889999999999


Q ss_pred             ceeeecCc--hhhhCCCCCCEEEcccccC
Q 035490          115 NKLAGEIP--EEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       115 n~~~~~~p--~~~~~~~~L~~L~l~~n~i  141 (142)
                      |+++ .++  ..+..+++|+.+++++|+|
T Consensus        75 N~i~-~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          75 NRLQ-QSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SCCC-SSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CccC-CCCCchhhcCCCCCCEEECCCCcC
Confidence            9998 444  4577888999999999876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9.6e-15  Score=92.67  Aligned_cols=105  Identities=24%  Similarity=0.320  Sum_probs=77.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .++++|++++|. ++. ++..+..+++|+.|++++|.++ .++ .+..+++|+.+++++|.++...+..+..+++|+.++
T Consensus        18 ~~lr~L~L~~n~-I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYK-IPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSC-CCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCC-CCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            457888888888 774 3544566788888888888887 454 467788888888888888744333455678888888


Q ss_pred             ccCceeeecCch--hhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPE--EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~--~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+++ .++.  .+..+++|+.+++++|++
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ecccccc-ccccccccccccccchhhcCCCcc
Confidence            8888887 4443  466778888888888865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.6e-14  Score=97.09  Aligned_cols=109  Identities=21%  Similarity=0.262  Sum_probs=91.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.+++++|. +++..+..+..+.+|++|++++|.+.+..+..+..+++|+.+++..|.+++..|..+..+++++.++
T Consensus       129 ~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         129 AALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            668888888888 8866666777888899999999998866677778889999999999998877788888889999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++.|++.+..+..++.+++|+.+++++|++
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccccccccccccccccccCEEEecCCCC
Confidence            999999855566788888999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=5.5e-14  Score=91.26  Aligned_cols=104  Identities=17%  Similarity=0.228  Sum_probs=89.3

Q ss_pred             EEEEcCCCCcceeecCccccCccccceeeeccCcceeeC-ChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490           35 AKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEI-PREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN  113 (142)
Q Consensus        35 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~  113 (142)
                      +.++.+++. ++ .+|..+.  +.+++|++++|.++..+ +..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus        11 ~~v~Cs~~~-L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRG-LK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSC-CS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCC-cC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            468899998 77 5676653  67999999999998544 4567889999999999999997778889999999999999


Q ss_pred             CceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +|+++...+..|.++++|+.|++++|.|+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             cccccccCHHHHhCCCcccccccCCcccc
Confidence            99999555667899999999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.51  E-value=3.2e-14  Score=98.54  Aligned_cols=109  Identities=28%  Similarity=0.479  Sum_probs=99.7

Q ss_pred             CcEEEEEcCC-CCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEE
Q 035490           32 QKVAKLDLRK-YQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAF  110 (142)
Q Consensus        32 ~~l~~L~l~~-n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l  110 (142)
                      ++|+.|++++ |. +.|.+|+.+..+++|++|++++|.+.+..+..+..+..|+.++++.|.+...+|..+..++.++.+
T Consensus        76 ~~L~~L~Ls~~N~-l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccc-cccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            7899999997 67 999999999999999999999999998888889999999999999999998899999999999999


Q ss_pred             EccCceeeecCchhhhCCCCC-CEEEcccccC
Q 035490          111 HANNNKLAGEIPEEIGCLFKL-QKLSIRRNLL  141 (142)
Q Consensus       111 ~l~~n~~~~~~p~~~~~~~~L-~~L~l~~n~i  141 (142)
                      ++++|.+.+.+|..+..+..+ +.++++.|++
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eccccccccccccccccccccccccccccccc
Confidence            999999998999888887765 7888888765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.1e-13  Score=92.51  Aligned_cols=119  Identities=21%  Similarity=0.189  Sum_probs=76.5

Q ss_pred             ceeeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceee------------------------eccCcceeeCCh
Q 035490           20 GQWTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHIN------------------------IADNSFHGEIPR   75 (142)
Q Consensus        20 ~~~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~------------------------l~~n~l~~~~~~   75 (142)
                      +..+.+......++++.|++++|. +.. .+..+..+++|+.|+                        +++|.+....+.
T Consensus        65 N~l~~l~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~  142 (266)
T d1p9ag_          65 AELTKLQVDGTLPVLGTLDLSHNQ-LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG  142 (266)
T ss_dssp             SCCCEEECCSCCTTCCEEECCSSC-CSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             cccccccccccccccccccccccc-ccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccc
Confidence            334444333334566666666666 543 233344444444444                        445554422333


Q ss_pred             hhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           76 EIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        76 ~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      .+..++.++.+++++|+++...++.+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            4456777888888888887655566777888888888888888 7787777788888888888875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.8e-13  Score=91.27  Aligned_cols=120  Identities=21%  Similarity=0.246  Sum_probs=84.2

Q ss_pred             CceeeeeEec--CCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccC
Q 035490           19 LGQWTGVTCA--HRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL   96 (142)
Q Consensus        19 ~~~~~g~~~~--~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~   96 (142)
                      +....++.-.  ...++|+.|++++|. ++.. + .+..+++|+.|++++|.++ ..+..+..++.|+.++++.+.+...
T Consensus        40 ~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~  115 (266)
T d1p9ag_          40 ENLLYTFSLATLMPYTRLTQLNLDRAE-LTKL-Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL  115 (266)
T ss_dssp             TSCCSEEEGGGGTTCTTCCEEECTTSC-CCEE-E-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCCcCHHHhhcccccccccccccc-cccc-c-ccccccccccccccccccc-cccccccccccccccccccccccee
Confidence            4445555432  334889999999999 8843 3 3567899999999999998 4555666777777777776655432


Q ss_pred             C------------------------CccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490           97 M------------------------PTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        97 ~------------------------p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      .                        +..+..++.++.+++++|++++..+..+..+++|+.|++++|.|+
T Consensus       116 ~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             eccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            2                        223444667777888888777444455777888888888888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3e-13  Score=85.12  Aligned_cols=91  Identities=18%  Similarity=0.157  Sum_probs=44.6

Q ss_pred             CccccCccccceeeeccC-cceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCC
Q 035490           50 SPYVGNLSFLRHINIADN-SFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCL  128 (142)
Q Consensus        50 ~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~  128 (142)
                      |..+..++.|++|++++| .++...+..|..++.|+.+++++|+++..-+..|..+++|+.|++++|+++ .+|......
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~  102 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQG  102 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCS
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcc
Confidence            444444555555555433 244222334555555555555555555443444555555555555555555 443332223


Q ss_pred             CCCCEEEcccccC
Q 035490          129 FKLQKLSIRRNLL  141 (142)
Q Consensus       129 ~~L~~L~l~~n~i  141 (142)
                      ..|+.|++++|++
T Consensus       103 ~~l~~L~L~~Np~  115 (156)
T d2ifga3         103 LSLQELVLSGNPL  115 (156)
T ss_dssp             CCCCEEECCSSCC
T ss_pred             ccccccccCCCcc
Confidence            3455555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.3e-13  Score=91.20  Aligned_cols=110  Identities=19%  Similarity=0.218  Sum_probs=94.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. +....+..+..+..|+.+++++|.+++..+..+..++.|+.+++++|.+....+..+..+++|+.++
T Consensus       105 ~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         105 GRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            679999999998 7766666677788899999999999855556777888999999999999866677888899999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      ++.|++++..|..|..+++|+.|++++|++.
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hhhccccccChhHhhhhhhcccccccccccc
Confidence            9999998777888999999999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=2.8e-12  Score=88.20  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=89.4

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      ++++.|++++|. .....+..+..++.++.|++++|.+.+..+..+..+++|+.+++++|+++ .+|..+..+++|+.|+
T Consensus       171 ~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         171 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  248 (305)
T ss_dssp             TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             CccCEEECCCCc-CCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEE
Confidence            678899999988 77777788888889999999999998766777888999999999999998 5688888899999999


Q ss_pred             ccCceeeecCchh-------hhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEE-------IGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~-------~~~~~~L~~L~l~~n~is  142 (142)
                      +++|+++ .++..       ......|+.|++++|++.
T Consensus       249 Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         249 LHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            9999988 55432       234567899999999763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.8e-12  Score=77.61  Aligned_cols=78  Identities=22%  Similarity=0.359  Sum_probs=69.6

Q ss_pred             ceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccc
Q 035490           60 RHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus        60 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n  139 (142)
                      +.|++++|.++ .++ .+..+..|+.+++++|.++ .+|..+..+++|+.+++++|.++ .+| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            57899999998 665 4889999999999999998 67888999999999999999999 665 5888999999999999


Q ss_pred             cCC
Q 035490          140 LLT  142 (142)
Q Consensus       140 ~is  142 (142)
                      +|+
T Consensus        76 ~i~   78 (124)
T d1dcea3          76 RLQ   78 (124)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=5.2e-12  Score=86.84  Aligned_cols=106  Identities=19%  Similarity=0.240  Sum_probs=92.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.+++.+|. +.. ++..  .+++|++|++++|...+..+..+..++.++.++++.|.+....+..+..+++|+.|+
T Consensus       150 ~~L~~l~l~~n~-l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         150 KKLSYIRIADTN-ITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             TTCCEEECCSSC-CCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             cccCccccccCC-ccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            568899999998 663 4443  357899999999999988888899999999999999999877677888999999999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +++|+++ .+|..+..+++|+.|++++|+|+
T Consensus       226 L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         226 LNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccccc-ccccccccccCCCEEECCCCccC
Confidence            9999999 88888999999999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-11  Score=77.44  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=72.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      +++++|++++++.++..-+..|..+++|+.|++++|.++...+..+..+++|+.++++.|+++ .+|........++.++
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccc
Confidence            679999998775377666678999999999999999999666778999999999999999998 5565544455799999


Q ss_pred             ccCceee
Q 035490          112 ANNNKLA  118 (142)
Q Consensus       112 l~~n~~~  118 (142)
                      +++|.|.
T Consensus       110 L~~Np~~  116 (156)
T d2ifga3         110 LSGNPLH  116 (156)
T ss_dssp             CCSSCCC
T ss_pred             cCCCccc
Confidence            9999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.6e-12  Score=80.05  Aligned_cols=88  Identities=17%  Similarity=0.131  Sum_probs=73.5

Q ss_pred             cccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCC
Q 035490           52 YVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKL  131 (142)
Q Consensus        52 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L  131 (142)
                      .+.++..+++|++++|+++ .++..+..+..|+.+++++|.++ .+ +.+..+++|+.|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            3456778999999999999 67766678999999999999998 44 458889999999999999984333446778999


Q ss_pred             CEEEcccccCC
Q 035490          132 QKLSIRRNLLT  142 (142)
Q Consensus       132 ~~L~l~~n~is  142 (142)
                      +.|++++|.|+
T Consensus        90 ~~L~L~~N~i~  100 (162)
T d1a9na_          90 TELILTNNSLV  100 (162)
T ss_dssp             CEEECCSCCCC
T ss_pred             ccceecccccc
Confidence            99999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=7.1e-11  Score=76.62  Aligned_cols=103  Identities=22%  Similarity=0.385  Sum_probs=61.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCC---------------------hhhcCCCCCcEEEccC
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP---------------------REIGNLFSLETLMITD   90 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~l~l~~   90 (142)
                      ++++.|++++|. +++..+  +..+++|++|++++|.+. .++                     ..+..++.|+.+++++
T Consensus        62 ~nL~~L~Ls~N~-l~~~~~--l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  137 (199)
T d2omxa2          62 NNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  137 (199)
T ss_dssp             TTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCcCcCcccccc-ccCccc--ccCCcccccccccccccc-cccccccccccccccccccccccccccchhhhhHHhhhhh
Confidence            556666666665 554222  455555555555555544 222                     2344556666666666


Q ss_pred             cccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490           91 NSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        91 n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      |.+. .+ ..+..+++++.+++.+|+++ .++ .++.+++|+.|++++|+|+
T Consensus       138 n~l~-~~-~~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         138 NTIS-DI-SALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             SCCC-CC-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC
T ss_pred             hhhc-cc-cccccccccccccccccccc-CCc-cccCCCCCCEEECCCCCCC
Confidence            6654 22 34556667777777777776 443 3677788888888888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=1.8e-13  Score=89.39  Aligned_cols=103  Identities=22%  Similarity=0.309  Sum_probs=84.1

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|++++|. ++. ++ .+..+++|+.|++++|.++ .++.....++.|+.+++++|.++. + ..+..+++|+.|+
T Consensus        48 ~~L~~L~Ls~n~-I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          48 KACKHLALSTNN-IEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLY  121 (198)
T ss_dssp             TTCCEEECSEEE-ESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEE
T ss_pred             cccceeECcccC-CCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccccccccc
Confidence            679999999998 874 33 5788999999999999988 666555556789999999999873 3 4577788999999


Q ss_pred             ccCceeeecCc--hhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIP--EEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p--~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|+++ .++  ..+..+++|+.|++++|++
T Consensus       122 L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccchhc-cccccccccCCCccceeecCCCcc
Confidence            9999998 554  3578889999999999865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=6.1e-11  Score=76.94  Aligned_cols=101  Identities=23%  Similarity=0.401  Sum_probs=75.0

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .+++.|+++++. +...  +.+..+++|++|++++|.+++ ++ .+..+++|+.++++.|.+. .++ .+..++.|+.++
T Consensus        40 ~~l~~L~l~~~~-i~~l--~~l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLG-IKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             cCCCEEECCCCC-CCCc--cccccCCCcCcCccccccccC-cc-cccCCcccccccccccccc-ccc-cccccccccccc
Confidence            678999999998 7742  357789999999999999984 44 3889999999999999887 333 466677777777


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ++.+.+. .. ..+..+++|+.+++++|.+
T Consensus       113 l~~~~~~-~~-~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2         113 LFNNQIT-DI-DPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             CCSSCCC-CC-GGGTTCTTCSEEECCSSCC
T ss_pred             ccccccc-cc-cccchhhhhHHhhhhhhhh
Confidence            7776665 22 2355566666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=1.1e-10  Score=76.38  Aligned_cols=103  Identities=26%  Similarity=0.367  Sum_probs=51.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccC---------------
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGL---------------   96 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~---------------   96 (142)
                      +++++|++++|. +++..  .+..+++|+.|++++|.++ .++ .+..++.|+.+++.++.+...               
T Consensus        68 ~~L~~L~L~~n~-i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2          68 PNVTKLFLNGNK-LTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG  142 (210)
T ss_dssp             TTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCCEEeCCCcc-ccCcc--ccccCcccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccc
Confidence            455555555555 54321  2344555555555555554 232 244444444444444433210               


Q ss_pred             -----CCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490           97 -----MPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        97 -----~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                           .+..+..+++|+.+++++|+++ .++ .+..+++|+.|++++|.|
T Consensus       143 ~n~l~~~~~~~~l~~L~~l~l~~n~l~-~i~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         143 NNKITDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccc-ccc-cccCCCCCCEEECCCCCC
Confidence                 0122344556666666666665 333 356666777777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=1.3e-10  Score=81.54  Aligned_cols=81  Identities=20%  Similarity=0.384  Sum_probs=59.8

Q ss_pred             ccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCC
Q 035490           53 VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ  132 (142)
Q Consensus        53 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~  132 (142)
                      +..++.+++|++++|.+++ ++ .+..+++|+.+++++|+++. ++ .+..+++|+.+++++|+++ .++. +..+++|+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~-~l~~-l~~l~~L~  376 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS-DLTP-LANLTRIT  376 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC-BCGG-GTTCTTCS
T ss_pred             cchhcccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC-CChh-hccCCCCC
Confidence            4556777788888888774 33 36778888888888888873 33 5777888888888888887 4433 67778888


Q ss_pred             EEEcccc
Q 035490          133 KLSIRRN  139 (142)
Q Consensus       133 ~L~l~~n  139 (142)
                      .|++++|
T Consensus       377 ~L~L~~N  383 (384)
T d2omza2         377 QLGLNDQ  383 (384)
T ss_dssp             EEECCCE
T ss_pred             EeeCCCC
Confidence            8888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.09  E-value=3.5e-10  Score=73.91  Aligned_cols=110  Identities=19%  Similarity=0.267  Sum_probs=72.8

Q ss_pred             eeeeEecCCCCcEEEEEcCCCCcceeecCccccCccccceeeeccCccee--------------------eCChhhcCCC
Q 035490           22 WTGVTCAHRHQKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHG--------------------EIPREIGNLF   81 (142)
Q Consensus        22 ~~g~~~~~~~~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--------------------~~~~~~~~l~   81 (142)
                      ..++......++++.|++++|. +++ ++ .+..+++|+.|++++|.+..                    ..+..+..++
T Consensus        80 i~~l~~~~~l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~  156 (210)
T d1h6ta2          80 LTDIKPLANLKNLGWLFLDENK-VKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT  156 (210)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSC-CCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccCccccccCcccccccccccc-ccc-cc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3333333333556666666665 553 22 24445555555555444321                    0123455678


Q ss_pred             CCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEccc
Q 035490           82 SLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRR  138 (142)
Q Consensus        82 ~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~  138 (142)
                      +|+.+++++|.+.+ ++ .+..+++|+.|++++|+++ .++ .+..+++|++|++++
T Consensus       157 ~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         157 KLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            99999999999974 33 4888999999999999998 665 588899999999975

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=4.1e-10  Score=78.89  Aligned_cols=104  Identities=22%  Similarity=0.305  Sum_probs=73.7

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeC--------------------ChhhcCCCCCcEEEccCc
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEI--------------------PREIGNLFSLETLMITDN   91 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--------------------~~~~~~l~~L~~l~l~~n   91 (142)
                      ++++.|++.+|. +.+..  .+..+++|+.|+++++.+.+..                    ...+..+++++.++++.|
T Consensus       241 ~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n  317 (384)
T d2omza2         241 TNLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN  317 (384)
T ss_dssp             TTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred             cccchhccccCc-cCCCC--cccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCC
Confidence            556666666666 55432  2455556666666665554211                    123566788889999999


Q ss_pred             ccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEcccccCC
Q 035490           92 SFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        92 ~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      .+.+. + .+..+++|+.|++++|+++ .++ .++.+++|+.|++++|.|+
T Consensus       318 ~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         318 NISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCC
T ss_pred             CCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCC
Confidence            88753 3 4778899999999999998 555 5888999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=1.4e-09  Score=71.58  Aligned_cols=80  Identities=24%  Similarity=0.398  Sum_probs=54.6

Q ss_pred             ccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCC
Q 035490           53 VGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQ  132 (142)
Q Consensus        53 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~  132 (142)
                      +..++.|++|++++|.+.+ .+ .+..+++|+.+++++|+++. ++ .+..+++|+.|++++|+++ .++ .++.+++|+
T Consensus       147 ~~~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~  220 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLF  220 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCC
T ss_pred             hcccccccccccccccccc-ch-hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCc-ccccCCCCC
Confidence            4556667777777777652 22 36677778888888777763 33 3667777888888887777 554 366777777


Q ss_pred             EEEccc
Q 035490          133 KLSIRR  138 (142)
Q Consensus       133 ~L~l~~  138 (142)
                      .|++++
T Consensus       221 ~L~lsn  226 (227)
T d1h6ua2         221 IVTLTN  226 (227)
T ss_dssp             EEEEEE
T ss_pred             EEEeeC
Confidence            777753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=9.1e-12  Score=81.09  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEcc
Q 035490           34 VAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHAN  113 (142)
Q Consensus        34 l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~  113 (142)
                      ++.+.+.+.-.--..++..+..+++|++|++++|.++ .++ .+..+++|+.+++++|.++ .++.....++.|+.|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccc
Confidence            4445555432011234567888999999999999998 565 5888999999999999998 566555555689999999


Q ss_pred             CceeeecCchhhhCCCCCCEEEcccccCC
Q 035490          114 NNKLAGEIPEEIGCLFKLQKLSIRRNLLT  142 (142)
Q Consensus       114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~is  142 (142)
                      +|+++ .+ ..+..+++|+.|++++|.|+
T Consensus       102 ~N~i~-~l-~~~~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_         102 YNQIA-SL-SGIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             EEECC-CH-HHHHHHHHSSEEEESEEECC
T ss_pred             ccccc-cc-ccccccccccccccccchhc
Confidence            99998 55 35777889999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.4e-09  Score=70.85  Aligned_cols=86  Identities=20%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCC-hhhcCCCCCcEEEccC-cccccCCCccccCCCCCcE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIP-REIGNLFSLETLMITD-NSFSGLMPTNLSRCSNLIA  109 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~-n~~~~~~p~~~~~l~~L~~  109 (142)
                      .++++|++++|. ++...+..|.++++|++|++++|.+...++ ..+..++.++.+.+.. +.+....+..+..+++|+.
T Consensus        29 ~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            579999999998 886555678889999999999998875544 4567788888887654 5666556677888899999


Q ss_pred             EEccCceee
Q 035490          110 FHANNNKLA  118 (142)
Q Consensus       110 l~l~~n~~~  118 (142)
                      +++..|++.
T Consensus       108 l~l~~~~l~  116 (242)
T d1xwdc1         108 LLISNTGIK  116 (242)
T ss_dssp             EEEESCCCC
T ss_pred             cccchhhhc
Confidence            999988876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=7.6e-09  Score=67.97  Aligned_cols=81  Identities=26%  Similarity=0.386  Sum_probs=59.8

Q ss_pred             ccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEE
Q 035490           56 LSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLS  135 (142)
Q Consensus        56 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~  135 (142)
                      .+.++.+.++.+.+..  ...+..++.|+.+++.+|.+...  ..+..+++|+.+++++|+++ .++ .+..+++|+.|+
T Consensus       128 ~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~  201 (227)
T d1h6ua2         128 LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVH  201 (227)
T ss_dssp             CTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEE
T ss_pred             ccchhhhhchhhhhch--hhhhccccccccccccccccccc--hhhcccccceecccCCCccC-CCh-hhcCCCCCCEEE
Confidence            3444445554444432  12356778899999999988733  44788999999999999998 554 478899999999


Q ss_pred             cccccCC
Q 035490          136 IRRNLLT  142 (142)
Q Consensus       136 l~~n~is  142 (142)
                      +++|+|+
T Consensus       202 Ls~N~lt  208 (227)
T d1h6ua2         202 LKNNQIS  208 (227)
T ss_dssp             CTTSCCC
T ss_pred             CcCCcCC
Confidence            9999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.9e-08  Score=66.38  Aligned_cols=102  Identities=15%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             EEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCC-CccccCCCCCcEEEcc-
Q 035490           36 KLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLM-PTNLSRCSNLIAFHAN-  113 (142)
Q Consensus        36 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~-p~~~~~l~~L~~l~l~-  113 (142)
                      .++.++.. ++ .+|..+.  ..++.|++++|.++...+..+..+++|+.++++.|.+...+ +..+..++.++.+.+. 
T Consensus        12 ~i~c~~~~-l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          12 VFLCQESK-VT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             EEEEESCS-CS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             EEEEeCCC-CC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45555555 55 4665543  46899999999998444456889999999999999887544 3468888999999876 


Q ss_pred             CceeeecCchhhhCCCCCCEEEcccccC
Q 035490          114 NNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       114 ~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      .|.+....+..+..+++|+.+++++|.+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCC
T ss_pred             cccccccccccccccccccccccchhhh
Confidence            4567645566788899999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.74  E-value=2e-08  Score=69.13  Aligned_cols=95  Identities=24%  Similarity=0.334  Sum_probs=73.9

Q ss_pred             CcEEEEEcCCCCcceeecCccccCccccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEE
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYVGNLSFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFH  111 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~  111 (142)
                      .++++|+++++. ++ .+|+   .+++|++|++++|.++ .+|..   +.+|+.|++.+|.++ .++. +  .+.|+.|+
T Consensus        38 ~~l~~LdLs~~~-L~-~lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLG-LS-SLPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSC-CS-CCCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEE
T ss_pred             cCCCEEEeCCCC-CC-CCCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--cccccccc
Confidence            458899999998 77 4664   3568999999999998 77754   457899999999887 4443 2  24689999


Q ss_pred             ccCceeeecCchhhhCCCCCCEEEcccccC
Q 035490          112 ANNNKLAGEIPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       112 l~~n~~~~~~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      +++|.+. .+|. ++.+.+|+.++++++.+
T Consensus       105 L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             ccccccc-cccc-hhhhccceeeccccccc
Confidence            9999998 6764 56788999999988765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.2e-09  Score=76.33  Aligned_cols=109  Identities=18%  Similarity=0.257  Sum_probs=81.0

Q ss_pred             CcEEEEEcCCCCcceeec-CccccCccccceeeeccCccee----eCChhhcCCCCCcEEEccCcccccC----CCcccc
Q 035490           32 QKVAKLDLRKYQSLRGFL-SPYVGNLSFLRHINIADNSFHG----EIPREIGNLFSLETLMITDNSFSGL----MPTNLS  102 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~l~~n~~~~~----~p~~~~  102 (142)
                      .+++.|++++++ +++.. ..-+..+++++.|++++|.++.    .+...+..+++|+.|++++|.++..    +.+.+.
T Consensus         2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            468999999999 87532 3345667889999999998873    2344567889999999999988632    122222


Q ss_pred             C-CCCCcEEEccCceeeec----CchhhhCCCCCCEEEcccccC
Q 035490          103 R-CSNLIAFHANNNKLAGE----IPEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       103 ~-l~~L~~l~l~~n~~~~~----~p~~~~~~~~L~~L~l~~n~i  141 (142)
                      . ..+|+.|++++|+++..    ++..+..+++|+.|++++|.|
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            2 34799999999998732    345567788999999999976

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.34  E-value=8.7e-08  Score=66.40  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=73.4

Q ss_pred             CcEEEEEcCCCCcceee-----cCccccCccccceeeeccCcceee----CChhhcCCCCCcEEEccCcccccCC----C
Q 035490           32 QKVAKLDLRKYQSLRGF-----LSPYVGNLSFLRHINIADNSFHGE----IPREIGNLFSLETLMITDNSFSGLM----P   98 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~~----p   98 (142)
                      +.++.|++++|. +...     +...+...+.|+.|++++|.++..    +...+...++|+.+++++|.++...    .
T Consensus       186 ~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         186 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            568888888887 6532     234456677888888888887632    3345567788888888888876431    1


Q ss_pred             ccccC--CCCCcEEEccCceeeec----Cchhh-hCCCCCCEEEcccccCC
Q 035490           99 TNLSR--CSNLIAFHANNNKLAGE----IPEEI-GCLFKLQKLSIRRNLLT  142 (142)
Q Consensus        99 ~~~~~--l~~L~~l~l~~n~~~~~----~p~~~-~~~~~L~~L~l~~n~is  142 (142)
                      ..+..  ...|+.|++++|.+...    +...+ ...+.|+.|++++|.++
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            22222  25688889988888632    22333 24567889999888763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.4e-08  Score=62.49  Aligned_cols=81  Identities=16%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             cCccccceeeeccCcceee--CChhhcCCCCCcEEEccCcccccCCCc-cccCCCCCcEEEccCceeeecCc-------h
Q 035490           54 GNLSFLRHINIADNSFHGE--IPREIGNLFSLETLMITDNSFSGLMPT-NLSRCSNLIAFHANNNKLAGEIP-------E  123 (142)
Q Consensus        54 ~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~l~l~~n~~~~~~p~-~~~~l~~L~~l~l~~n~~~~~~p-------~  123 (142)
                      ..++.|+.|++++|.++..  ++..+..+++|+.+++++|.++. +++ .......++.+++.+|++.....       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            4577888889999988742  22345668888889999988874 332 22334568888888888864332       2


Q ss_pred             hhhCCCCCCEEE
Q 035490          124 EIGCLFKLQKLS  135 (142)
Q Consensus       124 ~~~~~~~L~~L~  135 (142)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            345678888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=9.9e-08  Score=59.60  Aligned_cols=64  Identities=23%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             hcCCCCCcEEEccCcccccCC--CccccCCCCCcEEEccCceeeecCch-hhhCCCCCCEEEcccccC
Q 035490           77 IGNLFSLETLMITDNSFSGLM--PTNLSRCSNLIAFHANNNKLAGEIPE-EIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus        77 ~~~l~~L~~l~l~~n~~~~~~--p~~~~~l~~L~~l~l~~n~~~~~~p~-~~~~~~~L~~L~l~~n~i  141 (142)
                      ...++.|+.+++++|+++..-  +..+..+++|+.|++++|.++ .+++ ......+|+.+++.+|+|
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCc
Confidence            345667777777777776321  233445677777777777776 4433 222334567777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=8.5e-07  Score=59.96  Aligned_cols=61  Identities=15%  Similarity=0.092  Sum_probs=34.8

Q ss_pred             CCCCCcEEEccCcc-cccCCCccccCCCCCcEEEccC-ceeeecCchhhhCCCCCCEEEcccc
Q 035490           79 NLFSLETLMITDNS-FSGLMPTNLSRCSNLIAFHANN-NKLAGEIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus        79 ~l~~L~~l~l~~n~-~~~~~p~~~~~l~~L~~l~l~~-n~~~~~~p~~~~~~~~L~~L~l~~n  139 (142)
                      .+++|+.++++++. ++......+..+++|+.|++++ +.++..-...++.+++|+.|++.++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            35566666666543 4434444555666677777766 3454333344555666777766654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.13  E-value=2.5e-07  Score=64.04  Aligned_cols=110  Identities=17%  Similarity=0.243  Sum_probs=68.4

Q ss_pred             CcEEEEEcCCCCcceee----cCccccCccccceeeeccCcceee-----CChhhcCCCCCcEEEccCcccccC----CC
Q 035490           32 QKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFHGE-----IPREIGNLFSLETLMITDNSFSGL----MP   98 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~l~l~~n~~~~~----~p   98 (142)
                      +.++.+.+++|. +...    +...+.....|+.|+++.|.+...     +...+...+.|+.+++++|.++..    +.
T Consensus       158 ~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         158 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             cccceeeccccc-ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            345555555555 4321    122234456788888888887632     223355677888888888887532    23


Q ss_pred             ccccCCCCCcEEEccCceeeec----CchhhhC--CCCCCEEEcccccCC
Q 035490           99 TNLSRCSNLIAFHANNNKLAGE----IPEEIGC--LFKLQKLSIRRNLLT  142 (142)
Q Consensus        99 ~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~--~~~L~~L~l~~n~is  142 (142)
                      ..+..++.|+.|++++|.+...    +.+.+..  ...|+.|++++|.|+
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            4566778888888888888632    2223322  356888888888763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.11  E-value=3.5e-06  Score=57.49  Aligned_cols=74  Identities=20%  Similarity=0.277  Sum_probs=59.3

Q ss_pred             cccceeeeccCcceeeCChhhcCCCCCcEEEccCcccccCCCccccCCCCCcEEEccCceeeecCchhhhCCCCCCEEEc
Q 035490           57 SFLRHINIADNSFHGEIPREIGNLFSLETLMITDNSFSGLMPTNLSRCSNLIAFHANNNKLAGEIPEEIGCLFKLQKLSI  136 (142)
Q Consensus        57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~~~~~~p~~~~~~~~L~~L~l  136 (142)
                      .+++.|+++++.++ .+|+.   +++|+.|++++|+++ .+|..+   .+|+.|++.+|+++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            35889999999998 78853   568999999999998 678654   57899999999988 65431   246999999


Q ss_pred             ccccCC
Q 035490          137 RRNLLT  142 (142)
Q Consensus       137 ~~n~is  142 (142)
                      ++|.|.
T Consensus       106 ~~n~l~  111 (353)
T d1jl5a_         106 SNNQLE  111 (353)
T ss_dssp             CSSCCS
T ss_pred             cccccc
Confidence            999763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=3.6e-07  Score=64.60  Aligned_cols=109  Identities=16%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             CcEEEEEcCCCCcceeecCccc----cCccccceeeeccCcceee----CChhhc-CCCCCcEEEccCcccccC----CC
Q 035490           32 QKVAKLDLRKYQSLRGFLSPYV----GNLSFLRHINIADNSFHGE----IPREIG-NLFSLETLMITDNSFSGL----MP   98 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~~~~~l----~~l~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~l~l~~n~~~~~----~p   98 (142)
                      ..++.++++++. +.......+    .....|++|++++|.+++.    +...+. ....|+.|++++|.++..    ++
T Consensus       312 ~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  390 (460)
T d1z7xw1         312 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  390 (460)
T ss_dssp             CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             cccccccccccc-hhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH
Confidence            345566666655 443322212    2234566666666665432    122222 234566666666666532    22


Q ss_pred             ccccCCCCCcEEEccCceeeecCch----hhh-CCCCCCEEEcccccC
Q 035490           99 TNLSRCSNLIAFHANNNKLAGEIPE----EIG-CLFKLQKLSIRRNLL  141 (142)
Q Consensus        99 ~~~~~l~~L~~l~l~~n~~~~~~p~----~~~-~~~~L~~L~l~~n~i  141 (142)
                      +.+...++|++|++++|+++..-..    .+. ....|+.|++..|.+
T Consensus       391 ~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            3344456666666666666522111    111 122466666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=3.1e-06  Score=52.83  Aligned_cols=108  Identities=13%  Similarity=0.143  Sum_probs=75.2

Q ss_pred             CcEEEEEcCCCCcceee----cCccccCccccceeeeccCcceeeC----ChhhcCCCCCcEEEccCcccccC----CCc
Q 035490           32 QKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFHGEI----PREIGNLFSLETLMITDNSFSGL----MPT   99 (142)
Q Consensus        32 ~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~l~l~~n~~~~~----~p~   99 (142)
                      +.+++|+++++..+...    +-..+...+.|+.|++++|.+....    ...+...++|+.+++++|.++..    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            78999999874325532    2334566678999999999987432    23455678899999999998743    223


Q ss_pred             cccCCCCCcEEEccCceeee-------cCchhhhCCCCCCEEEcccc
Q 035490          100 NLSRCSNLIAFHANNNKLAG-------EIPEEIGCLFKLQKLSIRRN  139 (142)
Q Consensus       100 ~~~~l~~L~~l~l~~n~~~~-------~~p~~~~~~~~L~~L~l~~n  139 (142)
                      .+...++|+.|++.+|++..       .+...+...+.|+.|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            45666889999998876541       13344555678899988664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.1e-05  Score=52.89  Aligned_cols=84  Identities=19%  Similarity=0.250  Sum_probs=59.4

Q ss_pred             CcEEEEEcCCCC-cceee-cCccccCccccceeeeccCc-ceeeCChhhcCCCCCcEEEccCc-ccccCCCccccCCCCC
Q 035490           32 QKVAKLDLRKYQ-SLRGF-LSPYVGNLSFLRHINIADNS-FHGEIPREIGNLFSLETLMITDN-SFSGLMPTNLSRCSNL  107 (142)
Q Consensus        32 ~~l~~L~l~~n~-~~~~~-~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~l~l~~n-~~~~~~p~~~~~l~~L  107 (142)
                      +.++.|+++++. .++.. +..-...+++|++|++++|. +++.....+..+++|+.++++++ .++......+..+++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            678999998763 13322 22223456789999998864 66666677788889999999884 5665545567778899


Q ss_pred             cEEEccCc
Q 035490          108 IAFHANNN  115 (142)
Q Consensus       108 ~~l~l~~n  115 (142)
                      +.+++.++
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            99998776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=2.7e-05  Score=48.37  Aligned_cols=87  Identities=13%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             CccccceeeeccC-cceee----CChhhcCCCCCcEEEccCcccccC----CCccccCCCCCcEEEccCceeeec----C
Q 035490           55 NLSFLRHINIADN-SFHGE----IPREIGNLFSLETLMITDNSFSGL----MPTNLSRCSNLIAFHANNNKLAGE----I  121 (142)
Q Consensus        55 ~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~~~~~----~  121 (142)
                      ..+.|++|+++++ .++..    +-..+.....|+.+++++|.+...    +...+...+.|+.|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3577999999874 45532    223456678899999999998732    223455568899999999999742    2


Q ss_pred             chhhhCCCCCCEEEcccccC
Q 035490          122 PEEIGCLFKLQKLSIRRNLL  141 (142)
Q Consensus       122 p~~~~~~~~L~~L~l~~n~i  141 (142)
                      ...+...+.|+.|++.+|.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            33455667899999988754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.16  E-value=4e-05  Score=47.39  Aligned_cols=110  Identities=14%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             CCcEEEEEcCCCCcceee----cCccccCccccceeeeccCcceeeC----ChhhcCCCCCcEEEccCcccccC----CC
Q 035490           31 HQKVAKLDLRKYQSLRGF----LSPYVGNLSFLRHINIADNSFHGEI----PREIGNLFSLETLMITDNSFSGL----MP   98 (142)
Q Consensus        31 ~~~l~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~l~l~~n~~~~~----~p   98 (142)
                      .+.+++|++.++..++..    +-..+...++|++|++++|.++...    ...+....+++.+++..+.+...    +.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            378999999984325532    2344567889999999999987532    23455678899999999887632    22


Q ss_pred             ccccCCCCCcEEEcc--Cceeee----cCchhhhCCCCCCEEEccccc
Q 035490           99 TNLSRCSNLIAFHAN--NNKLAG----EIPEEIGCLFKLQKLSIRRNL  140 (142)
Q Consensus        99 ~~~~~l~~L~~l~l~--~n~~~~----~~p~~~~~~~~L~~L~l~~n~  140 (142)
                      ..+...+.++.+++.  .|.+..    .+...+...+.|+.|++..+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            455667888876664  566642    234456677899999987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.74  E-value=0.0016  Score=39.83  Aligned_cols=88  Identities=15%  Similarity=0.162  Sum_probs=60.5

Q ss_pred             cCccccceeeecc-Ccceee----CChhhcCCCCCcEEEccCcccccC----CCccccCCCCCcEEEccCceeeec----
Q 035490           54 GNLSFLRHINIAD-NSFHGE----IPREIGNLFSLETLMITDNSFSGL----MPTNLSRCSNLIAFHANNNKLAGE----  120 (142)
Q Consensus        54 ~~l~~L~~L~l~~-n~l~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~~~~~----  120 (142)
                      ...+.|++|++++ +.++..    +-..+...+.|+.+++++|.++..    +...+.....++.+++..+.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4557899999987 456532    234456788999999999988643    223455568899999999888632    


Q ss_pred             CchhhhCCCCCCEEEcc--cccC
Q 035490          121 IPEEIGCLFKLQKLSIR--RNLL  141 (142)
Q Consensus       121 ~p~~~~~~~~L~~L~l~--~n~i  141 (142)
                      +...+...++|+.+++.  .|.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHhCccccEEeeccCCCcC
Confidence            23445566788876664  4554