Citrus Sinensis ID: 035507

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680----
Protein Sequence
MGGGDVNNLPRGLFFEKLERYRILIGYFWNRKYNIYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPSNEIILEDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVVGPQLDLC
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHEHHcccccHHHHHHcccccccccccccHHHHHHHHcccccHHccccccccHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHccccccccccHHHHHHcccccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHcccccEEcccEEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHcEEEEEccccccccccccccccccccccccccEEEHcHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccEEEEEEEcccHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccEEEc
Coil and Loop (DISEMBL)
mgggdvnnlprglffeKLERYRILIGYFWnrkyniysrdfRIELNTKVCLKDVLIVQLRGIEhlgleglqeqDVQNFVNELVKLQGSSQLKHLYISgsrlalnpeeserpeklsydipsneiilEDDISIAKSLFIEKKLTLSYLKSLTsfcsgscaikfpslevlvvddchnmmifsrgelsapmlhkVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRReglqsqsylpsalapsinlhtklEILPMMVAgvwsddnnlqLEATTQFQKLLsiesmpieeviesgvvprFVEFLMREDYPQLQFQAAWALtniasgtsentkvviehDAVPIFVKLlaspsddvREQAVWALGNvaadssgcrdlvlsEGALIPLLAQLNEHTELSMLRIATTTlsnlcrgkprplfdqvrpaLPALAQLIHSNDEQVLTDACWALfglsgdrnnDKIQAVIEAGVCGRLVellghpspsvltpalwtvgnivmgddfqtqciinhgAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAIsnassrgthdQIKYLVTEgcikplcdllqcadpkIVTVCLEGLENILKVgeaekntdsdigDINQFAQLVEEAEGLEKIEnlqshdnneihEKSVKILETYwcgrvvgpqldlc
Flexible Loop (DISEMBL)
mgggdvnnlprglfFEKLERYRILIGYFWNRKYNIYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGsrlalnpeeserpeklsydipsneiileDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRREglqsqsylpsalapsINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVgeaekntdsdiGDINQFAQLVEEAEGLEKIEnlqshdnneiHEKSVKILETYWCGRVvgpqldlc
Low Complexity Region (SEG)
MGGGDVNNLPRGLFFEKLERYRILIGYFWNRKYNIYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPSNEIILEDDISIAKSLFIEkkltlsylksltsFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVVGPQLDLC
Disordered region (IsUnstruct)
********LPRGLFFEKLERYRILIGYFWNRKYNIYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISG******************DIPSNEIILEDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFI***********YLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE*****DIGDINQFAQLVE******************IHEKSVKILETYWCGRVVGP*****
Disordered Region (DISOPRED)
********LPRGLFFEKLERYRILIGYFWNRKYNIYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPSNEIILEDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLV************************************************************************************PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVVGPQLDLC
Disordered Region (DISEMBL)
MGGGDVNNLPRGLFFEKLERYRILIGYFWNRKYNIYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGSRLA***********LSYDIPSNEIILEDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVVGPQLDLC
Disordered Region (DISPRO)
*****VNNLPRGLFFEKLERYRILIGYFWNRKYNIYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGSRL*****ESERPEKLSYDIPSNEIILEDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGE***********KTWDKEHSAWKDDLNTTIQQVNLKRESFIKK******************INLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNT*SDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVVGPQLDLC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGGDVNNLPRGLFFEKLERYRILIGYFWNRKYNIYSRDFRIELNTKVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPSNEIILEDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVVGPQLDLC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	684	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.690	0.897	0.742	0.0
Q96321	532	Importin subunit alpha-1	no	no	0.662	0.851	0.742	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.692	0.899	0.700	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.663	0.850	0.727	0.0
O04294	531	Importin subunit alpha-2	no	no	0.654	0.843	0.656	1e-170
Q76P29	516	Importin subunit alpha-B	yes	no	0.685	0.908	0.537	1e-135
O35345	536	Importin subunit alpha-7	yes	no	0.675	0.861	0.538	1e-128
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.675	0.861	0.538	1e-127
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.675	0.861	0.536	1e-126
O60684	536	Importin subunit alpha-7	yes	no	0.675	0.861	0.536	1e-126

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/478 (74%), Positives = 404/478 (84%), Gaps = 6/478 (1%)

Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
           D E    + + N    + + + ES +KKRREGLQ+Q+ +P++ A  ++   KLE LP M+
Sbjct: 21  DAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVD--KKLESLPAMI 78

Query: 256 AGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAW 314
            GV+SDDNNLQLEATTQF+KLLSIE S PIEEVI+SGVVPRFV+FL RED+PQLQF+AAW
Sbjct: 79  GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAW 138

Query: 315 ALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
           ALTNIASGTSENTKVVI+H AVPIFVKLL S SDDVREQAVWALGNVA DS  CRDLVL+
Sbjct: 139 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA 198

Query: 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
            GAL+PLLAQLNEHT+LSMLR AT TLSN CRGKP+P F+Q RPALPALA+LIHSNDE+V
Sbjct: 199 NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV 258

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           LTDACWAL  LS D  NDKIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD 
Sbjct: 259 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 317

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQCII+H A+PCLL+LL  N K SIKKE  W ISNI  GN++QIQAVI+AG+IGPLVNL
Sbjct: 318 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNL 377

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           LQ AEFDIK+EAAWAISNA+S G+HDQIKYLV+EGCIKPLCDLL C D +IVTVCLEGLE
Sbjct: 378 LQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLE 437

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           NILKVGE +K   +  GD+N F+Q+++EAEGLEKIENLQSHDNNEI+EK+VKILE YW
Sbjct: 438 NILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/458 (74%), Positives = 387/458 (84%), Gaps = 5/458 (1%)

Query: 216 KRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK 275
           + ES +KKRREG+Q+    PSA A S++   KL+ L  MVAGVWSDD  LQLE+TTQF+K
Sbjct: 41  REESLMKKRREGMQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRK 98

Query: 276 LLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD 334
           LLSIE S PIEEVI +GVVPRFVEFL +EDYP +QF+AAWALTNIASGTS++TKVVI+H+
Sbjct: 99  LLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHN 158

Query: 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSML 394
           AVPIFV+LLASPSDDVREQAVWALGNVA DS  CRDLVL  GAL+PLL QLNEH +LSML
Sbjct: 159 AVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSML 218

Query: 395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKI 454
           R AT TLSN CRGKP+P FDQV+PALPAL +LIHS+DE+VLTDACWAL  LS D  NDKI
Sbjct: 219 RNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLS-DGTNDKI 277

Query: 455 QAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514
           Q VI+AGV  +LVELL H SPSVL PAL TVGNIV GDD QTQC+IN GA+PCL  LL  
Sbjct: 278 QTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQ 337

Query: 515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574
           NHK SIKKE  W ISNI  GN++QIQ V++A LI PLV+LLQNAEFDIK+EAAWAISNA+
Sbjct: 338 NHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNAT 397

Query: 575 SRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDIN 634
           S G+HDQIKYLV +GCIKPLCDLL C DP+I+TVCLEGLENILKVGEAEKN     GD+N
Sbjct: 398 SGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNL-GHTGDMN 456

Query: 635 QFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
            +AQL+++AEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct: 457 YYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/478 (70%), Positives = 389/478 (81%), Gaps = 4/478 (0%)

Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
           D E    + + N    + N + E+ +KKRREGL      PS  A S +L  KLE LP ++
Sbjct: 21  DAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPSTAAVS-HLDKKLETLPELI 79

Query: 256 AGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAW 314
           AGVWSDD++LQLE TTQF+KLLSIE + PIEEVI+SGVVPRFVEFL R+DYPQLQF+AAW
Sbjct: 80  AGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAW 139

Query: 315 ALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
           ALTNIASGTSENTKVVI++ +VPIF++LL+SPSDDVREQAVWALGN+A DS   RDLVL 
Sbjct: 140 ALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLG 199

Query: 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
            GAL+ LLAQ NE  +LSMLR AT TLSN CRGKP+PLF+Q + ALP L +LIHSNDE+V
Sbjct: 200 HGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDEEV 259

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           LTDACWAL  LS D  NDKIQAVIEAGVC RLVELL H SPSVL PAL TVGNIV GDD 
Sbjct: 260 LTDACWALSYLS-DGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVGNIVTGDDI 318

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQ +I+H A+PCL+ LL  N+K SIKKE  W ISNI  GNR QIQ VI+AG+I PLV L
Sbjct: 319 QTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYL 378

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           LQNAEF+IK+EAAWAISNA+S G HDQIK+LV++GCIKPLCDLL C DP+IVTVCLEGLE
Sbjct: 379 LQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLE 438

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           NILK+GEA+K+  +  G +N +AQL++EAEGLEKIENLQSHDN EI+EK+VKILETYW
Sbjct: 439 NILKIGEADKDLGNTEG-VNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 495

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/462 (72%), Positives = 383/462 (82%), Gaps = 8/462 (1%)

Query: 216 KRESFIKKRREGLQSQSYLPSALAP----SINLHTKLEILPMMVAGVWSDDNNLQLEATT 271
           + ES +KKRR+GL + +   +A +P    S  L  KLE LP MV  V SDD+ +QLEATT
Sbjct: 41  REESLLKKRRDGLPAAAAAAAAASPLLAHSSALQQKLEGLPAMVQAVQSDDSAVQLEATT 100

Query: 272 QFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVV 330
           QF+KLLSIE S PIEEVI +GVVPRF+ FL REDYPQLQF+AAWALTNIASGTS+NTKVV
Sbjct: 101 QFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVV 160

Query: 331 IEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTE 390
           +E  AVPIFVKLL+SPS+DVREQAVWALGNVA DS  CRDLVL+ G L PLL QLNEH +
Sbjct: 161 VESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAK 220

Query: 391 LSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN 450
           LSMLR AT TLSN CRGKP+P F+QV+PAL AL +LIHS DE+VLTDACWAL  LS D  
Sbjct: 221 LSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLS-DGT 279

Query: 451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 510
           NDKIQAVIE+GV  RLVELL HPS SVL PAL TVGNIV GDD QTQC+I+H A+PCLL 
Sbjct: 280 NDKIQAVIESGVFPRLVELLMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLN 339

Query: 511 LLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570
           LL +NHK SIKKE  W ISNI  GNREQIQAVI+A +I PLV+LLQ AEFDIK+EAAWAI
Sbjct: 340 LLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVHLLQTAEFDIKKEAAWAI 399

Query: 571 SNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDI 630
           SNA+S GTHDQIKYLV +GCIKPLCDLL C DP+IVTVCLEGLENILKVGEAEKN  +  
Sbjct: 400 SNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGA-- 457

Query: 631 GDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           GD+N +AQ++++AEGLEKIENLQSHDN EI+EK+VK+LE+YW
Sbjct: 458 GDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYW 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  598 bits (1542), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 302/460 (65%), Positives = 366/460 (79%), Gaps = 12/460 (2%)

Query: 223 KRREGLQSQSYLPSALAPSINLHTKLEI---------LPMMVAGVWSDDNNLQLEATTQF 273
           KR E LQ + +  S    S    T+ ++         LP MVAG+WS+D+N QLEAT   
Sbjct: 40  KREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLL 99

Query: 274 QKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332
           +KLLSIE + PI EV++SGVVPR V+FL R+D+P+LQF+AAWALTNIASGTSENT V+IE
Sbjct: 100 RKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIE 159

Query: 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS 392
             AVPIF++LL+S S+DVREQAVWALGNVA DS  CRDLVLS GA+ PLL+Q NE+T+LS
Sbjct: 160 SGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLS 219

Query: 393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNND 452
           MLR AT TLSN CRGKP P F+Q +PALP L +L+ S DE+VLTDACWAL  LS D +ND
Sbjct: 220 MLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLS-DNSND 278

Query: 453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
           KIQAVIEAGV  RL++LLGH SPSVL PAL T+GNIV GDD QTQ +++  A+PCLL LL
Sbjct: 279 KIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLL 338

Query: 513 IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572
            +N+K SIKKE  W ISNI  GN +QIQAVIDAG+I  LV +LQ+AEF++K+EAAW ISN
Sbjct: 339 KNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISN 398

Query: 573 ASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGD 632
           A+S GTHDQIK++V++GCIKPLCDLL C D K+VTVCLE LENIL VGEAEKN     G+
Sbjct: 399 ATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNL-GHTGE 457

Query: 633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
            N +AQ+++EAEGLEKIENLQSHDNN+I++K+VKILET+W
Sbjct: 458 DNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/482 (53%), Positives = 348/482 (72%), Gaps = 13/482 (2%)

Query: 193 KTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILP 252
           K+ D + S  K +  +   + N + ES +KKR + +   +  P  +   IN   +LE LP
Sbjct: 15  KSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGST--PVKVDSLIN--QRLEQLP 70

Query: 253 MMVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQ 311
            +VA + S++ +L L++TT F+KLLSIE S PIEEVI++G+VPR V+FL  +D+PQLQF+
Sbjct: 71  SLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFE 130

Query: 312 AAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371
           AAWALTNIASGT E T+VVIE+ A+ +FV LL+SP DDVREQAVWALGN+A DS  CRDL
Sbjct: 131 AAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDL 190

Query: 372 VLSEGALIPLLAQLNEHT--ELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS 429
           VLS  AL PLL+ L      ++SM+R AT TLSN CRGKP+P F+ VR +LP LA+LI+ 
Sbjct: 191 VLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYY 250

Query: 430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489
            DE+VL DACWAL  LS D +N++IQ VI+A VC ++VELLGHP+ +V TPAL T+GNIV
Sbjct: 251 QDEEVLIDACWALSYLS-DGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNIV 309

Query: 490 MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIG 549
            GDD QTQ +++  A+  LL LL  + K +I+KE  W ISNI  G++ QIQ VIDA +I 
Sbjct: 310 TGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIP 368

Query: 550 PLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC 609
            LV LL NAEF+I++EAAWAISNA+S GT  QI +LV++GC+KPLCDLL+ +DP+I+ V 
Sbjct: 369 SLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVA 428

Query: 610 LEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILE 669
           LEG+ENIL  G+ E    + +  +N + +++E+A+GL KI +LQ H N +  EK  +I+ 
Sbjct: 429 LEGIENILVAGKKE----AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIIS 484

Query: 670 TY 671
           TY
Sbjct: 485 TY 486

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 265/492 (53%), Positives = 328/492 (66%), Gaps = 30/492 (6%)

Query: 210 IQQVNLKRESFIKKRR------------EGLQSQSYLPSALAPSINLHTKLEILPMMVAG 257
           IQ    KRE  + KRR            + L   SY+ S    S+       I   MV  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESV-------ITREMVEM 88

Query: 258 VWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIES-GVVPRFVEFLMREDYPQLQFQAAWA 315
           ++SDD++LQL  T +F+KLLS E S PI+EVI + GVV RFVEFL R +   LQF+AAWA
Sbjct: 89  LFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWA 148

Query: 316 LTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE 375
           LTNIASGTS+ TK+VIE  AVPIF++LL S  +DV+EQAVWALGN+A DSS CRD VL+ 
Sbjct: 149 LTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNC 208

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQV 434
             L PLL  L + T L+M R A   LSNLCRGK P P F +V P LP L++L+ S+D  +
Sbjct: 209 SILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDL 268

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           L DACWAL  LS D  N+KIQAVI++GVC RLVELL H    V +PAL  VGNIV GDD 
Sbjct: 269 LADACWALSYLS-DGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDI 327

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQ I+N  A+PCLL LL  + K SI+KE  W ISNI  GNR QIQAVIDA +   L+ +
Sbjct: 328 QTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEI 386

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           LQ AEF  ++EAAWAI+NA+S GT +QI+YLV+ GCIKPLCDLL   D KIV V L GLE
Sbjct: 387 LQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLE 446

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC- 673
           NIL++GE E         +N +  L+EEA GL+KIE LQSH+N EI++K+  ++E Y+  
Sbjct: 447 NILRLGEQESKRSG--SGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGV 504

Query: 674 ---GRVVGPQLD 682
                 + PQ+D
Sbjct: 505 EDDDSSLAPQVD 516

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  456 bits (1174), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 265/492 (53%), Positives = 327/492 (66%), Gaps = 30/492 (6%)

Query: 210 IQQVNLKRESFIKKRR------------EGLQSQSYLPSALAPSINLHTKLEILPMMVAG 257
           IQ    KRE  + KRR            + L   SY+ S    S+       I   MV  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESV-------ITREMVEM 88

Query: 258 VWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIES-GVVPRFVEFLMREDYPQLQFQAAWA 315
           ++SDD +LQL  T +F+KLLS E S PI+EVI + GVV RFVEFL R +   LQF+AAWA
Sbjct: 89  LFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWA 148

Query: 316 LTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE 375
           LTNIASGTS+ TK+VIE  AVPIF++LL S  +DV+EQAVWALGN+A DSS CRD VL+ 
Sbjct: 149 LTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNC 208

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQV 434
             L PLL  L + T L+M R A   LSNLCRGK P P F +V P LP L++L+ S+D  +
Sbjct: 209 SILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDL 268

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           L DACWAL  LS D  N+KIQAVI++GVC RLVELL H    V +PAL  VGNIV GDD 
Sbjct: 269 LADACWALSYLS-DGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDI 327

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQ I+N  A+PCLL LL  + K SI+KE  W ISNI  GNR QIQAVIDA +   L+ +
Sbjct: 328 QTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEI 386

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           LQ AEF  ++EAAWAI+NA+S GT +QI+YLV+ GCIKPLCDLL   D KIV V L GLE
Sbjct: 387 LQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLE 446

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC- 673
           NIL++GE E         +N +  L+EEA GL+KIE LQSH+N EI++K+  ++E Y+  
Sbjct: 447 NILRLGEQEGKRSG--SGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGV 504

Query: 674 ---GRVVGPQLD 682
                 + PQ+D
Sbjct: 505 EDDDSSLAPQVD 516

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/492 (53%), Positives = 327/492 (66%), Gaps = 30/492 (6%)

Query: 210 IQQVNLKRESFIKKRR------------EGLQSQSYLPSALAPSINLHTKLEILPMMVAG 257
           IQ    KRE  + KRR            + L   SY+ S    S+       I   MV  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESV-------ITREMVEM 88

Query: 258 VWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESG-VVPRFVEFLMREDYPQLQFQAAWA 315
           ++SDD++LQL  T +F+KLLS E S PI+EVI +  VV RFVEFL R +   LQF+AAWA
Sbjct: 89  LFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWA 148

Query: 316 LTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE 375
           LTNIASGTS+ TK+VIE  AVPIF++LL S  +DV+EQAVWALGN+A DSS CRD VL+ 
Sbjct: 149 LTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNC 208

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQV 434
             L PLL  L + T L+M R A   LSNLCRGK P P F +V P LP L++L+ S+D  +
Sbjct: 209 SILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDL 268

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           L DACWAL  LS D  N+KIQAVI++GVC RLVELL H    V +PAL  VGNIV GDD 
Sbjct: 269 LADACWALSYLS-DGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDI 327

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQ I+N  A+PCLL LL  + K SI+KE  W ISNI  GNR QIQAVIDA +   L+ +
Sbjct: 328 QTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEI 386

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           LQ AEF  ++EAAWAI+NA+S GT +QI+YLV+ GCIKPLCDLL   D KIV V L GLE
Sbjct: 387 LQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLE 446

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC- 673
           NIL++GE E         +N +  L+EEA GL+KIE LQSH+N EI++K+  ++E Y+  
Sbjct: 447 NILRLGEQEGKRSG--SGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGV 504

Query: 674 ---GRVVGPQLD 682
                 + PQ+D
Sbjct: 505 EDDDSSLAPQVD 516

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 264/492 (53%), Positives = 327/492 (66%), Gaps = 30/492 (6%)

Query: 210 IQQVNLKRESFIKKRR------------EGLQSQSYLPSALAPSINLHTKLEILPMMVAG 257
           IQ    KRE  + KRR            + L   SY+ S    S+       I   MV  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESV-------ITREMVEM 88

Query: 258 VWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESG-VVPRFVEFLMREDYPQLQFQAAWA 315
           ++SDD++LQL  T +F+KLLS E S PI+EVI +  VV RFVEFL R +   LQF+AAWA
Sbjct: 89  LFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWA 148

Query: 316 LTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE 375
           LTNIASGTS+ TK+VIE  AVPIF++LL S  +DV+EQAVWALGN+A DSS CRD VL+ 
Sbjct: 149 LTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNC 208

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQV 434
             L PLL  L + T L+M R A   LSNLCRGK P P F +V P LP L++L+ S+D  +
Sbjct: 209 SILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDL 268

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           L DACWAL  LS D  N+KIQAVI++GVC RLVELL H    V +PAL  VGNIV GDD 
Sbjct: 269 LADACWALSYLS-DGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDI 327

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQ I+N  A+PCLL LL  + K SI+KE  W ISNI  GNR QIQAVIDA +   L+ +
Sbjct: 328 QTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEI 386

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           LQ AEF  ++EAAWAI+NA+S GT +QI+YLV+ GCIKPLCDLL   D KIV V L GLE
Sbjct: 387 LQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLE 446

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC- 673
           NIL++GE E         +N +  L+EEA GL+KIE LQSH+N EI++K+  ++E Y+  
Sbjct: 447 NILRLGEQEGKRSG--SGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGV 504

Query: 674 ---GRVVGPQLD 682
                 + PQ+D
Sbjct: 505 EDDDSSLAPQVD 516

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	684
224130302	529	predicted protein [Populus trichocarpa]	0.666	0.862	0.784	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.665	0.856	0.786	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.663	0.856	0.777	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.665	0.856	0.781	0.0
255542844	531	importin alpha, putative [Ricinus commun	0.692	0.892	0.755	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.691	0.894	0.755	0.0
119866037	529	Impa2 [Nicotiana benthamiana]	0.690	0.892	0.759	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.663	0.856	0.772	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.666	0.862	0.773	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.665	0.855	0.776	0.0

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/460 (78%), Positives = 404/460 (87%), Gaps = 4/460 (0%)

Query: 214 NLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQF 273
           N + ES  KKRREGL +Q + P+A+  S N+  KLE LP MV+GVWSDD+NLQLEATTQF
Sbjct: 39  NKREESLQKKRREGLLAQQF-PAAVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQF 97

Query: 274 QKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332
           +KLLSIE S PIEEVI++GVVPRFVE L+RED+PQLQF+AAWALTNIASGTSENTKVVI+
Sbjct: 98  RKLLSIERSPPIEEVIQAGVVPRFVELLVREDFPQLQFEAAWALTNIASGTSENTKVVID 157

Query: 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS 392
           H AVPIFVKLL SPSDDVREQAVWALGNVA DS  CRDLVLS GALIPLLAQLNEH +LS
Sbjct: 158 HGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLS 217

Query: 393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNND 452
           MLR AT TLSN CRGKP+PLF++VRPALPAL +L+HS DE+VLTDACWAL  LS D  ND
Sbjct: 218 MLRNATWTLSNFCRGKPQPLFEKVRPALPALERLVHSTDEEVLTDACWALSYLS-DGTND 276

Query: 453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
           KIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD QTQCIIN GA+PCLL+LL
Sbjct: 277 KIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLL 336

Query: 513 IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572
            HNHK SIKKE  W ISNI  GN+EQIQAVI+AGLIGPLVNLLQNAEFDIK+EAAWA+SN
Sbjct: 337 THNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWAVSN 396

Query: 573 ASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGD 632
           A+S GTH+QIK+LV++GCIKPLCDLL C DP+IVTVCLEGLENILKVGEAEKN  +  GD
Sbjct: 397 ATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNS-GD 455

Query: 633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           +N +AQ++++AEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct: 456 VNFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/458 (78%), Positives = 399/458 (87%), Gaps = 3/458 (0%)

Query: 216 KRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK 275
           + ES  KKRREGLQ+Q   P+ L  S  +  KLE LP MVAGVWSDDN+ QLEATTQF+K
Sbjct: 41  REESLQKKRREGLQAQQQFPTPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRK 100

Query: 276 LLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD 334
           LLSIE S PIEEVI++GVVPRFVEFL+RED+PQLQF+AAWALTNIASGTSENTKVVI+H 
Sbjct: 101 LLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160

Query: 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSML 394
           AVPIFVKLL+SPSDDVREQAVWALGNVA DS  CRDLVLS GALIPLLAQLNEH +LSML
Sbjct: 161 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSML 220

Query: 395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKI 454
           R AT TLSN CRGKP+P F+QVR ALPAL +L+ SNDE+VLTDACWAL  LS D  NDKI
Sbjct: 221 RNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLS-DGTNDKI 279

Query: 455 QAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514
           QAVIEAGVC RLV+LL HPSPSVL PAL TVGNIV GDD QTQ IINHGA+PCLL+LL H
Sbjct: 280 QAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTH 339

Query: 515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574
           NHK SIKKE  W ISNI  GNR+QIQAVI+AGLI PLVNLLQNAEFDIK+EAAWAISNA+
Sbjct: 340 NHKKSIKKEACWTISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNAT 399

Query: 575 SRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDIN 634
           S GTH+QIKYLV++GCIKPLCDLL C DP+IVTVCLEGLENILKVGEAEK+   + GD+N
Sbjct: 400 SGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSL-GNTGDVN 458

Query: 635 QFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
            +AQ+++EAEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct: 459 LYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/458 (77%), Positives = 402/458 (87%), Gaps = 4/458 (0%)

Query: 216 KRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK 275
           + ES +KKRREGLQ+Q   P+ L  S  +  KLE LP MVAGVWSDDN++QLEATTQF+K
Sbjct: 41  REESLLKKRREGLQAQQQFPAPLQNS-TVDKKLESLPAMVAGVWSDDNSIQLEATTQFRK 99

Query: 276 LLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD 334
           LLSIE S PIEEVI++GVVPRFVEFL+RED+PQLQF+AAWALTNIASGTSENTKVVI+H 
Sbjct: 100 LLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 159

Query: 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSML 394
           AVPIFVKLL+SPSDDVREQAVWALGNVA DS  CRDLVLS+GAL+PLLAQLNEH +LSML
Sbjct: 160 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSML 219

Query: 395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKI 454
           R AT TLSN CRGKP+P F+QVRPALPAL +L+ SNDE+VLTDACWAL  LS D  NDKI
Sbjct: 220 RNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLS-DGTNDKI 278

Query: 455 QAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514
           QAVIEAGVC RLV+LL HPSPSVL PAL TVGNIV GDD QTQCIINHGA+PCLL LL +
Sbjct: 279 QAVIEAGVCARLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTN 338

Query: 515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574
           NHK SIKKE  W ISNI  GN+EQIQ VI+AGL+ PLVNLLQNAEFDIK+EAAWAISNA+
Sbjct: 339 NHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNAT 398

Query: 575 SRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDIN 634
           S G H+QIKYLV++GCIKPLCDLL C DP+IVTVCLEGLENILKVGEAEK+   + GD+N
Sbjct: 399 SGGIHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSL-GNTGDVN 457

Query: 635 QFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           ++AQ++++AEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct: 458 EYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/458 (78%), Positives = 399/458 (87%), Gaps = 3/458 (0%)

Query: 216 KRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK 275
           + ES  KKRREGLQ+Q   P+ L  +  +  KLE LP MVAGVWSDDN+ QLEATTQF+K
Sbjct: 41  REESLQKKRREGLQAQQQFPTPLQAASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRK 100

Query: 276 LLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD 334
           LLSIE S PIEEVI++GVVPRFVEFL+RED+PQLQF+AAWALTNIASGTSENTKVVI+H 
Sbjct: 101 LLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 160

Query: 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSML 394
           AVPIFVKLL+SPSDDVREQAVWALGNVA DS  CRDLVLS GALIPLLAQLNEH +LSML
Sbjct: 161 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSML 220

Query: 395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKI 454
           R AT TLSN CRGKP+P F+QVR ALPAL +L+ SNDE+VLTDACWAL  LS D  NDKI
Sbjct: 221 RNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLS-DGTNDKI 279

Query: 455 QAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514
           QAVIEAGVC RLV+LL HPSPSVL PAL TVGNIV GDD QTQ IINHGA+PCLL+LL H
Sbjct: 280 QAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTH 339

Query: 515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574
           NHK SIKKE  W ISNI  GNR+QIQAV++AGLI PLVNLLQNAEFDIK+EAAWAISNA+
Sbjct: 340 NHKKSIKKEACWTISNITAGNRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNAT 399

Query: 575 SRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDIN 634
           S GTH+QIKYLV++GCIKPLCDLL C DP+IVTVCLEGLENILKVGEAEK+   + GD+N
Sbjct: 400 SGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSM-GNSGDVN 458

Query: 635 QFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
            +AQ+++EAEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct: 459 LYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/478 (75%), Positives = 409/478 (85%), Gaps = 4/478 (0%)

Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
           D E    + + N    + N + ES  KKRREGLQ+Q  +P++L  S  +  KLE LP MV
Sbjct: 21  DAEEGRRRREDNMVEIRKNRREESLQKKRREGLQAQP-MPASLHSSA-VEKKLEHLPSMV 78

Query: 256 AGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAW 314
           AGVWSDD+NLQLEATTQF+KLLSIE S PIEEVI++GVVPRFVEFLMRED+PQLQF+AAW
Sbjct: 79  AGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAW 138

Query: 315 ALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
           ALTNIASGTSENT+VVI+H AVPIFVKLLASPSDDVREQAVWALGNVA DS  CRDLVL 
Sbjct: 139 ALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLVLG 198

Query: 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
            GAL+PLLAQLNEH +LSMLR AT TLSN CRGKP+P F+QV+PALPALA+LIHSNDE+V
Sbjct: 199 NGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQVKPALPALARLIHSNDEEV 258

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           LTDACWAL  LS D  NDKIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD 
Sbjct: 259 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDM 317

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQCIINH A+PCLL LL +N+K SIKKE  W ISNI  GN+EQIQAVI+A +IGPLV+L
Sbjct: 318 QTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEANIIGPLVHL 377

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           L+NAEFDIK+EAAWAISNA+S GTHDQIKYLV++GCIKPLCDLL C DP+IVTVCLEGLE
Sbjct: 378 LENAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLE 437

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           NILKVGEA+KN  ++ G +N +AQ++++AEGLEKIENLQSHDN EI+EK+VKILETYW
Sbjct: 438 NILKVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSHDNIEIYEKAVKILETYW 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/478 (75%), Positives = 407/478 (85%), Gaps = 5/478 (1%)

Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
           D E    + + N    + + + ES  KKRREGLQ+Q +  +A A ++    KLE LP MV
Sbjct: 21  DAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPAAAHASTV--EKKLESLPSMV 78

Query: 256 AGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAW 314
           AGVWSD+++LQLEATTQF+KLLSIE S PIEEVI+SGVVPRFVEFL+RED+PQLQF+AAW
Sbjct: 79  AGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAW 138

Query: 315 ALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
           ALTNIASGTSENTKVVI+H AVPIFVKLL SPSDDVREQAVWALGNVA DS  CRDLVL 
Sbjct: 139 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLG 198

Query: 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
            GALIPLLAQLNEH +LSMLR AT TLSN CRGKP+P FDQV+PALPAL +L+HS+DE+V
Sbjct: 199 HGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDEEV 258

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           LTDACWAL  LS D  NDKIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD 
Sbjct: 259 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDI 317

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQ IINHGA+PCLL+LL HNHK SIKKE  W ISNI  GN+EQIQAVI+AG+I PLV+L
Sbjct: 318 QTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVHL 377

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           LQ AEFDIK+EAAWAISNA+S GTH+QIKYLV++GCIKPLCDLL C DP+IVTVCLEGLE
Sbjct: 378 LQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLE 437

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           NILKVGEAEK T  + GD+N +AQL+++AEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct: 438 NILKVGEAEK-TLGNSGDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119866037|gb|ABM05488.1| Impa2 [Nicotiana benthamiana]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/479 (75%), Positives = 404/479 (84%), Gaps = 7/479 (1%)

Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSY-LPSALAPSINLHTKLEILPMM 254
           D E    + + N    + + + ES +KKRREGLQ Q    P+ L  S  +  KLE LP M
Sbjct: 21  DAEEGRRRREDNMVEIRKSKREESLLKKRREGLQPQQQPFPANLHTS-TVEKKLESLPSM 79

Query: 255 VAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAA 313
           VAGVWS+DNNLQLEATTQF+KLLSIE S PIEEVI+SGVVPRFVEFLMRED+PQLQF+AA
Sbjct: 80  VAGVWSNDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAA 139

Query: 314 WALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL 373
           WALTNIASGTS+NT+VVI+H AVPIFVKLL SPSDDVREQAVWALGNVA DS  CRDLVL
Sbjct: 140 WALTNIASGTSDNTRVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVL 199

Query: 374 SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQ 433
           S GALIPLLAQLNEHT+LSMLR AT TLSN CRGKP+P F+QVRPAL AL +L+HSNDE+
Sbjct: 200 SNGALIPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPPFEQVRPALSALQRLVHSNDEE 259

Query: 434 VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD 493
           VLTDACWAL  LS D  NDKIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD
Sbjct: 260 VLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDD 318

Query: 494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN 553
            QTQCII HGA+ CLL+LL HNHK SIKKE  W ISNI  GN+EQIQAVI+AGLI PLVN
Sbjct: 319 LQTQCIIEHGALTCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVN 378

Query: 554 LLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGL 613
           LLQ AEFDIK+EAAWAISNA+S GTH+QIK+LV++GCIKPLCDLL C DP+IVTVCLEGL
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 438

Query: 614 ENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           ENILKVGEAEK   ++ G IN +AQL ++AEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct: 439 ENILKVGEAEK---ANTGGINYYAQLTDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/458 (77%), Positives = 399/458 (87%), Gaps = 4/458 (0%)

Query: 216 KRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK 275
           + ES +KKRREGLQ+   LP+ L  S  +   LE LP MVAGVWS+DN+LQLEATTQF+K
Sbjct: 41  REESLLKKRREGLQAHQQLPAPLQNS-TVDKNLESLPAMVAGVWSNDNSLQLEATTQFRK 99

Query: 276 LLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD 334
           LLSIE S PIEEVI++GVVPRFVEFL+RED+PQLQF+AAWALTNIASGTSENTKVVI+H 
Sbjct: 100 LLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG 159

Query: 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSML 394
           AVPIFVKLL+SPSDDVREQAVWALGNVA DS  CRDLVLS GAL+PLLAQLNEH +LSML
Sbjct: 160 AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSML 219

Query: 395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKI 454
           R AT TLSN CRGKP+P F+QVRPALPAL +L+ SNDE+VLTDACWAL  LS D  NDKI
Sbjct: 220 RNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLS-DGTNDKI 278

Query: 455 QAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514
           QAVIEAGVC RL++LL HPSPSVL PAL TVGNIV GDD QTQCIINHGA+PCLL LL +
Sbjct: 279 QAVIEAGVCPRLMQLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTN 338

Query: 515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574
           NHK SIKKE  W ISNI  GN+EQIQ VI+AGL+ PLVNLLQ+AEFDIK+EA+WAISNA+
Sbjct: 339 NHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNAT 398

Query: 575 SRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDIN 634
           S GTHDQIKYLV++GC+KPLCDLL C DP+IVTVCLEGLENILKVGEAEK+   + GD+N
Sbjct: 399 SGGTHDQIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSL-GNTGDVN 457

Query: 635 QFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
            +AQ+++EAEGLEKIENLQSHDNNEI+EK VKILETYW
Sbjct: 458 VYAQMIDEAEGLEKIENLQSHDNNEIYEKVVKILETYW 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/460 (77%), Positives = 400/460 (86%), Gaps = 4/460 (0%)

Query: 214 NLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQF 273
           N + ES +KKRREGLQ+Q + P+ L+ S N+  KLE LP MVAGVWS+D NLQLE+TTQF
Sbjct: 39  NKREESLLKKRREGLQAQQFPPAILSSS-NVEKKLENLPSMVAGVWSEDGNLQLESTTQF 97

Query: 274 QKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332
           +KLLSIE S PIEEVI++GVVPRFVEFL+RED+PQLQF+AAWALTNIASGTSENTKVVI+
Sbjct: 98  RKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVID 157

Query: 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS 392
           H AVPIFVKLL SPSDDVREQAVWALGNVA DS  CRDLVLS GALIPLLAQLNEH +LS
Sbjct: 158 HGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLS 217

Query: 393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNND 452
           MLR AT TLSN CRGKP+P F+QVRPALPAL +L+HS DE+VLTD+CWAL  LS D  +D
Sbjct: 218 MLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDEEVLTDSCWALSYLS-DGTDD 276

Query: 453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
           KIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD QTQCII  GA+PCLL+LL
Sbjct: 277 KIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIITTGALPCLLSLL 336

Query: 513 IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572
            HNHK SIKKE  W ISNI  GN+EQIQAVI+ GLIGPLVNLLQNAEFDIK+EAAWA+SN
Sbjct: 337 THNHKKSIKKEACWTISNITAGNKEQIQAVIENGLIGPLVNLLQNAEFDIKKEAAWAVSN 396

Query: 573 ASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGD 632
           A+S GTH+QIK+LV++GCIKPLCDLL   DP+IVTV LEGLENILKVGEAEKN  +  GD
Sbjct: 397 ATSGGTHEQIKFLVSQGCIKPLCDLLVSPDPRIVTVSLEGLENILKVGEAEKNLGNS-GD 455

Query: 633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
            N +AQ++++AEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct: 456 ANFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/460 (77%), Positives = 400/460 (86%), Gaps = 5/460 (1%)

Query: 214 NLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQF 273
           N + ES  KKRREGLQ Q  +P+++  S+ +  KLE LP MV GVW+DDNNLQLEATTQF
Sbjct: 41  NRREESLQKKRREGLQPQQ-MPASVHSSL-VEKKLEHLPSMVTGVWTDDNNLQLEATTQF 98

Query: 274 QKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332
           +KLLSIE S PIEEVI++GVV RFVEFLMRED+PQLQF+AAWALTNIASGTSENTKVVI+
Sbjct: 99  RKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVID 158

Query: 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS 392
           H AVPIFVKLLASPSDDVREQAVWALGNVA DS  CRDLVLS GAL+PLLAQLNEH +LS
Sbjct: 159 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLS 218

Query: 393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNND 452
           MLR AT TLSN CRGKP+P FDQV+PALPALA+LIHSNDE+VLTDACWAL  LS D  ND
Sbjct: 219 MLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLS-DGTND 277

Query: 453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
           KIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD QTQ IINH A+PCLL LL
Sbjct: 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLL 337

Query: 513 IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572
            +N+K SIKKE  W ISNI  GN++QIQAVI+A LI PLVNLLQNAEFDIK+EAAWAISN
Sbjct: 338 TNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISN 397

Query: 573 ASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGD 632
           A+S G+H+QIK+LV++GCIKPLCDLL C DP+IVTVCLEGLENILKVGEA+KN   + GD
Sbjct: 398 ATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNI-GNTGD 456

Query: 633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           +N +AQ+++EAEGLEKIENLQSHDN EI+EK+VKILETYW
Sbjct: 457 VNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	684
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.694	0.887	0.727	1.3e-178
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.691	0.889	0.717	2.8e-176
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.707	0.899	0.669	5.5e-164
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.654	0.843	0.656	3.5e-155
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.682	0.866	0.626	2e-150
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.671	0.884	0.589	2e-134
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.663	0.859	0.571	7.6e-128
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.669	0.828	0.563	1.3e-125
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.669	0.831	0.569	1.9e-124
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.684	0.906	0.538	2.4e-124

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1734 (615.5 bits), Expect = 1.3e-178, P = 1.3e-178
 Identities = 350/481 (72%), Positives = 397/481 (82%)

Query:   196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQS---YLPSALAPSINLHTKLEILP 252
             D E    + + N    + + + ES  KKRREGLQ+     + PS +  S  +  KLE LP
Sbjct:    21 DAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQFAPSPVPASSTVEKKLESLP 80

Query:   253 MMVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQ 311
              MV GVWSDD +LQLEATTQF+KLLSIE S PIEEVI++GVVPRFVEFL REDYPQLQF+
Sbjct:    81 AMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTREDYPQLQFE 140

Query:   312 AAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371
             AAWALTNIASGTSENTKVVIEH AVPIFV+LLAS SDDVREQAVWALGNVA DS  CRDL
Sbjct:   141 AAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWALGNVAGDSPRCRDL 200

Query:   372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND 431
             VL +GALIPLL+QLNEH +LSMLR AT TLSN CRGKP+P FDQVRPALPAL +LIHS D
Sbjct:   201 VLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLIHSTD 260

Query:   432 EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG 491
             E+VLTDACWAL  LS D  NDKIQ+VIEAGV  RLVELL H SPSVL PAL ++GNIV G
Sbjct:   261 EEVLTDACWALSYLS-DGTNDKIQSVIEAGVVPRLVELLQHQSPSVLIPALRSIGNIVTG 319

Query:   492 DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPL 551
             DD QTQC+I+HGA+  LL+LL HNHK SIKKE  W ISNI  GNR+QIQAV +AGLI PL
Sbjct:   320 DDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVCEAGLICPL 379

Query:   552 VNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLE 611
             VNLLQNAEFDIK+EAAWAISNA+S G+ DQIKY+V +G +KPLCDLL C DP+I+TVCLE
Sbjct:   380 VNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIITVCLE 439

Query:   612 GLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671
             GLENILKVGEAEK T  + GD+N +AQL+++AEGLEKIENLQSHDN+EI+EK+VKILETY
Sbjct:   440 GLENILKVGEAEKVT-GNTGDVNFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILETY 498

Query:   672 W 672
             W
Sbjct:   499 W 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1712 (607.7 bits), Expect = 2.8e-176, P = 2.8e-176
 Identities = 343/478 (71%), Positives = 394/478 (82%)

Query:   196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
             D E    + + N    + + + ES +KKRREG+Q+    PSA A S++   KL+ L  MV
Sbjct:    21 DAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVD--KKLDSLKDMV 78

Query:   256 AGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAW 314
             AGVWSDD  LQLE+TTQF+KLLSIE S PIEEVI +GVVPRFVEFL +EDYP +QF+AAW
Sbjct:    79 AGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAW 138

Query:   315 ALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
             ALTNIASGTS++TKVVI+H+AVPIFV+LLASPSDDVREQAVWALGNVA DS  CRDLVL 
Sbjct:   139 ALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLG 198

Query:   375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
              GAL+PLL QLNEH +LSMLR AT TLSN CRGKP+P FDQV+PALPAL +LIHS+DE+V
Sbjct:   199 CGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDEEV 258

Query:   435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
             LTDACWAL  LS D  NDKIQ VI+AGV  +LVELL H SPSVL PAL TVGNIV GDD 
Sbjct:   259 LTDACWALSYLS-DGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDDI 317

Query:   495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
             QTQC+IN GA+PCL  LL  NHK SIKKE  W ISNI  GN++QIQ V++A LI PLV+L
Sbjct:   318 QTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSL 377

Query:   555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
             LQNAEFDIK+EAAWAISNA+S G+HDQIKYLV +GCIKPLCDLL C DP+I+TVCLEGLE
Sbjct:   378 LQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLE 437

Query:   615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
             NILKVGEAEKN     GD+N +AQL+++AEGLEKIENLQSHDNNEI+EK+VKILETYW
Sbjct:   438 NILKVGEAEKNL-GHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1596 (566.9 bits), Expect = 5.5e-164, P = 5.5e-164
 Identities = 330/493 (66%), Positives = 391/493 (79%)

Query:   187 LHKVQLKTW-DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLP--SAL-AP-- 240
             L K   KT  D + +  + + N    + N + +S +KKRREG+  Q  LP  + L  P  
Sbjct:    11 LRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLDGPQT 70

Query:   241 SINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEF 299
             +  +  +LE +PMMV GV+SDD   QLEATTQF+KLLSIE S PI+EVI++GV+PRFVEF
Sbjct:    71 AAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEF 130

Query:   300 LMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALG 359
             L R D+PQLQF+AAWALTN+ASGTS++T+VVIE  AVPIFVKLL S SDDVREQAVWALG
Sbjct:   131 LGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALG 190

Query:   360 NVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPA 419
             NVA DS  CR+LVL+ GAL PLLAQLNE+++LSMLR AT TLSN CRGKP   F+QV+PA
Sbjct:   191 NVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPA 250

Query:   420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
             LP L QLI+ NDE+VLTDACWAL  LS D  NDKIQAVIEAGVC RLVELLGH SP+VL 
Sbjct:   251 LPILRQLIYLNDEEVLTDACWALSYLS-DGPNDKIQAVIEAGVCPRLVELLGHQSPTVLI 309

Query:   480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
             PAL TVGNIV GDD QTQ II  G +P L  LL  NHK SIKKE  W ISNI  GN+ QI
Sbjct:   310 PALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQI 369

Query:   540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
             +AV+ AG+I PLV+LLQNAEFDIK+EAAWAISNA+S G+H+QI+YLVT+GCIKPLCDLL 
Sbjct:   370 EAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLI 429

Query:   600 CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNE 659
             C DP+IVTVCLEGLENILKVGEA+K    + G +N +AQ++EE++GL+K+ENLQSHDNNE
Sbjct:   430 CPDPRIVTVCLEGLENILKVGEADKEMGLNSG-VNLYAQIIEESDGLDKVENLQSHDNNE 488

Query:   660 IHEKSVKILETYW 672
             I+EK+VKILE YW
Sbjct:   489 IYEKAVKILERYW 501

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1513 (537.7 bits), Expect = 3.5e-155, P = 3.5e-155
 Identities = 302/460 (65%), Positives = 366/460 (79%)

Query:   223 KRREGLQSQSYLPSALAPSINLHTKLEI---------LPMMVAGVWSDDNNLQLEATTQF 273
             KR E LQ + +  S    S    T+ ++         LP MVAG+WS+D+N QLEAT   
Sbjct:    40 KREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLL 99

Query:   274 QKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332
             +KLLSIE + PI EV++SGVVPR V+FL R+D+P+LQF+AAWALTNIASGTSENT V+IE
Sbjct:   100 RKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIE 159

Query:   333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS 392
               AVPIF++LL+S S+DVREQAVWALGNVA DS  CRDLVLS GA+ PLL+Q NE+T+LS
Sbjct:   160 SGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLS 219

Query:   393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNND 452
             MLR AT TLSN CRGKP P F+Q +PALP L +L+ S DE+VLTDACWAL  LS D +ND
Sbjct:   220 MLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLS-DNSND 278

Query:   453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
             KIQAVIEAGV  RL++LLGH SPSVL PAL T+GNIV GDD QTQ +++  A+PCLL LL
Sbjct:   279 KIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLL 338

Query:   513 IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN 572
              +N+K SIKKE  W ISNI  GN +QIQAVIDAG+I  LV +LQ+AEF++K+EAAW ISN
Sbjct:   339 KNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISN 398

Query:   573 ASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGD 632
             A+S GTHDQIK++V++GCIKPLCDLL C D K+VTVCLE LENIL VGEAEKN     G+
Sbjct:   399 ATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNL-GHTGE 457

Query:   633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
              N +AQ+++EAEGLEKIENLQSHDNN+I++K+VKILET+W
Sbjct:   458 DNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
 Identities = 297/474 (62%), Positives = 370/474 (78%)

Query:   203 KDDLNTTIQQVNLKRESFIKKRREGLQ-SQSYLPSA-LAPSINLHTKLEILPMMVAGVWS 260
             ++D    I++ N + E+  KKRREG   S +  P    + S+   T+LE +  M+AGV S
Sbjct:    29 REDNMVEIRK-NKREENLQKKRREGFNPSMASQPGQDFSSSLPTETRLENIQQMIAGVMS 87

Query:   261 DDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNI 319
             +D +LQLEAT  F++LLSIE + PI EV++SGVVP  V+FL R+D+ QLQF+AAWALTNI
Sbjct:    88 EDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRDDFTQLQFEAAWALTNI 147

Query:   320 ASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALI 379
             ASGTSENT+V+I+  AVP+FVKLL+S S++VREQAVWALGNVA DS  CRD VLS  A++
Sbjct:   148 ASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCRDHVLSCEAMM 207

Query:   380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ-VRPALPALAQLIHSNDEQVLTDA 438
              LLAQ +EH++LSMLR AT TLSN CRGKP+P F+Q  + ALPAL +L+HS DE+VLTDA
Sbjct:   208 SLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPALERLLHSTDEEVLTDA 267

Query:   439 CWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQC 498
              WAL  LS D  N+KIQ VI+AGV  RLV+LL HPSPSVL PAL T+GNIV GDD QTQ 
Sbjct:   268 SWALSYLS-DGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALRTIGNIVTGDDIQTQA 326

Query:   499 IINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA 558
             +I+  A+P LL LL + +K SIKKE  W ISNI  GN  QIQ V  AG+I PL+NLL+  
Sbjct:   327 VISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVFQAGIIRPLINLLEIG 386

Query:   559 EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK 618
             EF+IK+EA WAISNA+S G HDQIK+LV++GCI+PLCDLL C DP++VTV LEGLENILK
Sbjct:   387 EFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLEGLENILK 446

Query:   619 VGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
             VGEAEKN   + G+ N +AQ++E+A+GL+KIENLQSHDNNEI+EK+VKILE+YW
Sbjct:   447 VGEAEKNL-GNTGNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKAVKILESYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
 Identities = 277/470 (58%), Positives = 342/470 (72%)

Query:   203 KDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDD 262
             ++D    I++ + + E+ +KKRR  +    Y   +  P  +L   LEI  M + GV+SDD
Sbjct:    29 REDFLVEIRK-SKRNENLMKKRRVKVLPPDYKLISNDPFESL---LEIANM-ITGVFSDD 83

Query:   263 NNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321
              +LQLE TT+F+ +LS + S P + VI+SGVVPRFVEFL ++D P+LQF+AAWALTNIAS
Sbjct:    84 PSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKKDDNPKLQFEAAWALTNIAS 143

Query:   322 GTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPL 381
             G SE+TKVVI+H  VP+FV+LLASP DDVREQA+W LGNVA DS  CRD VL+ GA IPL
Sbjct:   144 GASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFVLNSGAFIPL 203

Query:   382 LAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWA 441
             L QLN H  LS+LR AT TLSN  RGKP P FD V+  LP L +L++S+DEQVL DACWA
Sbjct:   204 LHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDEQVLIDACWA 263

Query:   442 LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN 501
             L  LS D +N+ IQ+VIEAGV  RLVELL H SP VL PAL  +GNIV G+  QT C+IN
Sbjct:   264 LSNLS-DASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNSQQTHCVIN 322

Query:   502 HGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD 561
              G +P L  LL  NH   I++E  W ISNI  G  EQIQ+VIDA LI  LVNL Q+AEFD
Sbjct:   323 CGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVNLAQHAEFD 382

Query:   562 IKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621
             IK+EA WAISNAS  G+ +QIKYLV + CIK LCD+L C D +I+ V L GLE IL  GE
Sbjct:   383 IKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGLEMILIAGE 442

Query:   622 AEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY 671
              +KN    + D+N ++Q++E+AEGLEKIENLQ H NNEI+EK+VKIL+TY
Sbjct:   443 VDKN----LRDVNCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
 Identities = 273/478 (57%), Positives = 343/478 (71%)

Query:   203 KDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDD 262
             +DD+   I++   + ES +KKRRE L    + PSA     +L  KL      ++ +WSD+
Sbjct:    28 EDDM-VEIRKAK-REESLLKKRREALP---HSPSA----DSLDQKL------ISCIWSDE 72

Query:   263 NNLQLEATTQFQKLLSIE--SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIA 320
              +L +EATTQ + LL  E  ++ +EEVI++G+VPRFVEFL  +D PQLQF+AAWALTNIA
Sbjct:    73 RDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFEAAWALTNIA 132

Query:   321 SGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIP 380
             SGTSENT+VVI+H AV I V+LL SP D VREQ VWALGN++ DS  CRD+VL   AL  
Sbjct:   133 SGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDIVLGHAALPS 192

Query:   381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACW 440
             LL QLN   +LSML  A  TLSNLCRGKP+P FDQV  ALPALAQLI  +D+++L   CW
Sbjct:   193 LLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDDKELLAYTCW 252

Query:   441 ALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 500
             AL  LS D +N+KIQAVIEA VC RL+ L  H SPSV+TPAL T+GNIV G+D QTQ II
Sbjct:   253 ALVYLS-DGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGNDSQTQHII 311

Query:   501 NHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF 560
             +  A+PCL+ LL  ++  +I+KE  W +SNI  G + QIQAV DA +   LVNLLQN+E 
Sbjct:   312 DLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALVNLLQNSEG 371

Query:   561 DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG 620
             D+K+EAAWAI NA + G++ QI +LV + CIKPLCDLL C+D ++V VCLE L+ ILKVG
Sbjct:   372 DVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEALKKILKVG 431

Query:   621 E------AEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
             E      AE        ++N  AQL+EEAEGLEKIE LQSH+NN+I+E +VKILETYW
Sbjct:   432 EVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVKILETYW 489

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
 Identities = 270/479 (56%), Positives = 346/479 (72%)

Query:   211 QQVNL---KRESFIKKRREGLQSQSY---LPSALAPSIN------LHTKLEI-LPMMVAG 257
             QQV +   KRE  + KRR G+Q++     +   +A + +      + ++L + LP MV G
Sbjct:    32 QQVEIRKQKREENLAKRR-GIQTRDGGIGVGGGMAAAESDDEASAIESELNVELPEMVKG 90

Query:   258 VWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWAL 316
             V+SD    Q++ATT+F+KLLS E + PIE VIE+GVV RFVEFL R  +  +QF+AAWAL
Sbjct:    91 VFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL-RSPHTLVQFEAAWAL 149

Query:   317 TNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEG 376
             TNIASG+++ T+VVIE  AVPIFV+LL+SP  DVREQAVWALGN+A DS  CRD VL+ G
Sbjct:   150 TNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAGDSPQCRDFVLNAG 209

Query:   377 ALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVL 435
             AL PLL  +N+  ++SMLR AT TLSN CRGK P+P ++ + PALP LA+LI+  D++VL
Sbjct:   210 ALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPVLAKLIYMLDDEVL 269

Query:   436 TDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495
              DACWA+  LS D  N+KIQAVIEAG+  RLVELL H S SV TPAL +VGNIV GDD Q
Sbjct:   270 IDACWAISYLS-DGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGDDVQ 328

Query:   496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL 555
             TQ IIN GA+P LL+LL  + K+ I+KE  W ISNI  GN  QIQ+VIDAG+I PLV+LL
Sbjct:   329 TQVIINCGALPALLSLL-SSTKDGIRKEACWTISNITAGNSSQIQSVIDAGIIPPLVHLL 387

Query:   556 QNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGL 613
              N +F  ++EA WAISNA+S G    DQI+YLVT+GCIKPLCDLL C D KI+ V L+GL
Sbjct:   388 ANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACPDNKIIQVALDGL 447

Query:   614 ENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
             ENILKVGE +K        +N++A  +EEA G+EKI + Q++ N EI+ K+  I+E Y+
Sbjct:   448 ENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIYMKAYNIIEKYF 506

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
 Identities = 273/479 (56%), Positives = 342/479 (71%)

Query:   211 QQVNL---KRESFIKKRREGLQSQSYLPSA---LAPSINLHT-----KL-EILPMMVAGV 258
             QQV +   KRE  + KRR G+ + +  P A    AP  +  T     +L E LP MV GV
Sbjct:    32 QQVEIRKAKREENLAKRR-GIGTGADRPGASLGAAPDSDDDTAPTESQLNEDLPQMVQGV 90

Query:   259 WSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALT 317
             +S+  + Q++ATT+F+KLLS E + PIEEVI++GVV RFVEFL R  +  +QF+AAWALT
Sbjct:    91 FSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTLVQFEAAWALT 149

Query:   318 NIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGA 377
             NIASG++  T+VVIE  AVPIFV+LL SP  DVREQAVWALGN+A DS  CRD VLS GA
Sbjct:   150 NIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQCRDYVLSCGA 209

Query:   378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLT 436
             L PLL  L +  +LSMLR AT TLSN CRGK P+P +  + PALP LA+L++S D++VL 
Sbjct:   210 LKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKLVYSLDDEVLI 269

Query:   437 DACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT 496
             DACWA+  LS D +NDKIQAVIEAG+  RLVELL H S SV TPAL +VGNIV GDD QT
Sbjct:   270 DACWAISYLS-DGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGDDVQT 328

Query:   497 QCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ 556
             Q IIN GA+PCLL+LL  N K+ I+KE  W ISNI  GN  QIQ+V+DA +I PL++LL 
Sbjct:   329 QVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSVVDANIIPPLIHLLS 387

Query:   557 NAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
             N +   ++EA WAISNA+S G    DQI+YLV +GCIKPLCDLL C D KI+ V L+GLE
Sbjct:   388 NGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKIIQVALDGLE 447

Query:   615 NILKVGEAEKNTDSDIGD-INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
             NILKVG+ +K    +  D IN++A  +EE  G+EKI   Q++ N EI+ K+  I+E Y+
Sbjct:   448 NILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKAFNIIEKYF 506

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 260/483 (53%), Positives = 352/483 (72%)

Query:   193 KTWDKEHSAWK-DDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEIL 251
             K+ D + S  K ++ + +I++ N + ES +KKR + +   +  P  +   IN   +LE L
Sbjct:    15 KSIDSDESRRKREEASLSIRK-NKREESLLKKRTQAVPGST--PVKVDSLIN--QRLEQL 69

Query:   252 PMMVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
             P +VA + S++ +L L++TT F+KLLSIE S PIEEVI++G+VPR V+FL  +D+PQLQF
Sbjct:    70 PSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQF 129

Query:   311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
             +AAWALTNIASGT E T+VVIE+ A+ +FV LL+SP DDVREQAVWALGN+A DS  CRD
Sbjct:   130 EAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRD 189

Query:   371 LVLSEGALIPLLAQLNEHT--ELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH 428
             LVLS  AL PLL+ L      ++SM+R AT TLSN CRGKP+P F+ VR +LP LA+LI+
Sbjct:   190 LVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIY 249

Query:   429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488
               DE+VL DACWAL  LS D +N++IQ VI+A VC ++VELLGHP+ +V TPAL T+GNI
Sbjct:   250 YQDEEVLIDACWALSYLS-DGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNI 308

Query:   489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548
             V GDD QTQ +++  A+  LL LL  + K +I+KE  W ISNI  G++ QIQ VIDA +I
Sbjct:   309 VTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANII 367

Query:   549 GPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTV 608
               LV LL NAEF+I++EAAWAISNA+S GT  QI +LV++GC+KPLCDLL+ +DP+I+ V
Sbjct:   368 PSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINV 427

Query:   609 CLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKIL 668
              LEG+ENIL  G+ E    + +  +N + +++E+A+GL KI +LQ H N +  EK  +I+
Sbjct:   428 ALEGIENILVAGKKE----AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRII 483

Query:   669 ETY 671
              TY
Sbjct:   484 STY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5386	0.6754	0.8619	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5365	0.6754	0.8619	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5283	0.6666	0.8413	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5373	0.6856	0.9089	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7008	0.6929	0.8994	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5365	0.6754	0.8619	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5386	0.6754	0.8619	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7426	0.6900	0.8973	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	684
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-171
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-29
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-24
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-20
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-20
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-17
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-09
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-09
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	1e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-07
pfam01749	97	pfam01749, IBB, Importin beta binding domain	5e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-06
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	7e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-04

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  500 bits (1288), Expect = e-171
 Identities = 250/471 (53%), Positives = 318/471 (67%), Gaps = 16/471 (3%)

Query: 211 QQVNL---KRESFIKKRREGLQSQSYLPSALAPSINLHTKLEI-LPMMVAGVWSDDNNLQ 266
           QQV L   KRE  + KRR           A +  I +  +    LP +   ++SDD   Q
Sbjct: 32  QQVELRKQKREELLNKRRNLADVSE---EAESSFIPMEQQFYSELPQLTQQLFSDDIEQQ 88

Query: 267 LEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE 325
           L+A  +F+KLLS E S PI+ VI++GVVPRFVEF+       LQF+AAWALTNIASGT++
Sbjct: 89  LQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ 148

Query: 326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQL 385
            TKVV++  AVP+F++LL+S  DDVREQAVWALGN+A DS GCRD VL  GAL PLL  L
Sbjct: 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLL 208

Query: 386 NEH-TELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALF 443
                 +SMLR AT TLSNLCRGK P P +  +  ALP LA+LI+S D +VL DACWA+ 
Sbjct: 209 LSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAIS 268

Query: 444 GLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHG 503
            LS D  N+KIQAV++ G+ GRLVELL H S  + TPAL +VGNIV G D QTQ IIN G
Sbjct: 269 YLS-DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG 327

Query: 504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIK 563
           A+    +LL  + K +I+KE  W ISNI  GN EQIQAVIDA LI PL++LL +AE+ IK
Sbjct: 328 ALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK 386

Query: 564 EEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621
           +EA WAISNA+S G +  D I+YLV++G IKPLCDLL   D KI+ V L+ +ENILKVGE
Sbjct: 387 KEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446

Query: 622 AEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
            ++       +IN +A  VE+A G++ I  LQ   N  I++K+  I+E ++
Sbjct: 447 QDRLRYGK--NINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  112 bits (283), Expect = 2e-29
 Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)

Query: 285 EEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA 344
           E VI++G +P  V  L   D   +Q +AAWAL+N+++G ++N + V+E   +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 345 SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404
           S  ++V + A+WAL N+AA     + +VL  G  +P L  L + +   + + AT  LSNL
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 405 CR 406
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 98.5 bits (246), Expect = 1e-24
 Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 2/114 (1%)

Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478
            LPAL  L+ S+DE V  +A WAL  LS   NND IQAV+EAG    LV+LL      V+
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLS-AGNNDNIQAVVEAGGLPALVQLLKSEDEEVV 66

Query: 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532
             ALW + N+  G +     ++  G VP L+ LL  +    I+K  +  +SN+A
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 97.4 bits (243), Expect = 4e-24
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 455 QAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514
           +AVI+AG    LV LL     +V   A W + N+  G++   Q ++  G +P L+ LL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS 574
                + K   W + N+A G  +    V++AG +  LVNLL ++  DI++ A  A+SN +
Sbjct: 61  ED-EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 575 S 575
           S
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYP 306
           +   LP +V+ + S D N+Q EA      L +  +  I+ V+E+G +P  V+ L  ED  
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-E 63

Query: 307 QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAA 363
           ++   A WAL N+A+G  +N  +V+E   VP  V LL S ++D+++ A  AL N+A+
Sbjct: 64  EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 14/133 (10%)

Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
           +AVI AG +  LV+LL +++ +++ EAAWA+SN S+ G +D I+ +V  G +  L  LL+
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSA-GNNDNIQAVVEAGGLPALVQLLK 59

Query: 600 CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNE 659
             D ++V   L  L N+    E  K              +V EA G+ K+ NL    N +
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNK-------------LIVLEAGGVPKLVNLLDSSNED 106

Query: 660 IHEKSVKILETYW 672
           I + +   L    
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 86.2 bits (214), Expect = 4e-20
 Identities = 34/118 (28%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 499 IINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA 558
           +I  G +P L++LL  +   ++++E +W +SN++ GN + IQAV++AG +  LV LL++ 
Sbjct: 3   VIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 559 EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENI 616
           + ++ + A WA+ N ++    D    ++  G +  L +LL  ++  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 76.6 bits (189), Expect = 8e-17
 Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPA--LPALAQLI 427
           + V+  G L P L  L   ++ ++ R A   LSNL  G        V  A  LPAL QL+
Sbjct: 1   EAVIQAGGL-PALVSLLSSSDENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLL 58

Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
            S DE+V+  A WAL  L+     D    V+EAG   +LV LL   +  +   A   + N
Sbjct: 59  KSEDEEVVKAALWALRNLAAG-PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSN 117

Query: 488 IV 489
           + 
Sbjct: 118 LA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.8 bits (133), Expect = 4e-10
 Identities = 20/41 (48%), Positives = 31/41 (75%)

Query: 535 NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575
           + E  QAVI+AG + PLV LL + + +++EEAAWA+SN ++
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 52.5 bits (127), Expect = 3e-09
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAA 363
           + EN + VIE  AVP  V+LL+SP ++V+E+A WAL N+AA
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 52.0 bits (126), Expect = 5e-09
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAA 363
             EN + V++   +P  V+LL S  ++V ++A WAL N+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNV 361
            +++  AA AL  +A G  E  +  +  + +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVP-ELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489
           + +  QAVIEAG    LV+LL  P   V   A W + N+ 
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 20/41 (48%), Positives = 30/41 (73%)

Query: 535 NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575
           + E  QAV+DAG +  LV LL++ + ++ +EAAWA+SN SS
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 46.3 bits (111), Expect = 5e-07
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 281 SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321
               + V+++G +P  VE L  ED  ++  +AAWAL+N++S
Sbjct: 2   DENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 216 KR-ESFIKKRREGLQ---SQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATT 271
           KR E  +K+R  GL               S      LE LP+MV GV SDD   QL AT 
Sbjct: 38  KREEQLLKRRNVGLPPEDGAEPESELDGSSDADQLSLE-LPVMVQGVNSDDPENQLSATQ 96

Query: 272 Q 272
            
Sbjct: 97  A 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.9 bits (110), Expect = 7e-07
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 283 PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS 321
             + VIE+G VP  V+ L   D  ++Q +AAWAL+N+A+
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489
           +++  QAV++AG    LVELL      V+  A W + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352
           +   +E L+ +  P+++  AA AL  +              +A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRR 49

Query: 353 QAVWALGNVAADSS 366
            A  ALG +    +
Sbjct: 50  AAAEALGKLGDPEA 63

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 578 THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENI 616
             +  + +V  G +  L +LL+  D ++V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 27/254 (10%)

Query: 316 LTNIASGTSENTKVVIEH-DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
           L  +A    E  K +  H  A+P+ V LL S +   +  A   LG +  +    R  VL 
Sbjct: 39  LLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED-LRVKVLL 97

Query: 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR---------------PLFDQVRPA 419
            G + PLL+ L   +  +  + A   +  +  G                   L+DQ++P 
Sbjct: 98  GGCIPPLLSLLKSGSAEAQ-KAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156

Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
                      D+ V      AL  L G  +     A +EAG    LV+LL   +     
Sbjct: 157 N--------KQDKVVEGLLTGALRNLCGSTDG-FWSATLEAGGVDILVKLLSSGNSDAQA 207

Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
            A   +  ++M  +     +++ GAV  LL LL   ++ S++ E +  +  ++  ++E  
Sbjct: 208 NAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267

Query: 540 QAVIDAGLIGPLVN 553
           QA+ DAG I  L+N
Sbjct: 268 QAIADAGGIPALIN 281

Length = 2102

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 50/249 (20%), Positives = 78/249 (31%), Gaps = 38/249 (15%)

Query: 268 EATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327
           EA    Q L  ++ + +E   E       +  L+ ++   ++  AA AL  + S      
Sbjct: 22  EAAAALQALAELDDLILELAPE---AADELLKLLEDEDLLVRLSAAVALGELGS------ 72

Query: 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR---------DLVLSEGAL 378
                 +AVP+  +LL+     VR+ A  ALG +    +            +  +   A 
Sbjct: 73  -----EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAA 127

Query: 379 IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDA 438
             L    +E     +L       S             VR A  A   L    D     +A
Sbjct: 128 RALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAA--AAEALGELGDP----EA 181

Query: 439 CWALFGLSGDRNNDKIQAVIEA---------GVCGRLVELLGHPSPSVLTPALWTVGNIV 489
              L  L  D + D  +A   A              LV+ L   S  V   AL  +G I 
Sbjct: 182 IPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLALGEIG 241

Query: 490 MGDDFQTQC 498
             +      
Sbjct: 242 DEEAVDALA 250

Length = 335

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 578 THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENI 616
           + +  + ++  G + PL  LL   D ++       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532
             Q +I  GAVP L+ LL    +  +++E +W +SN+A
Sbjct: 4   NKQAVIEAGAVPPLVQLLSSPDE-EVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLS 446
           A+P L QL+ S DE+V  +A WAL  L+
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.0 bits (87), Expect = 9e-04
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 492 DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532
           DD   Q +++ G +P L+ LL       + KE +W +SN++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	684
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.91
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.8
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.71
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.69
PRK09687	280	putative lyase; Provisional	99.64
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.64
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.62
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.6
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.6
PRK09687	280	putative lyase; Provisional	99.59
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.56
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.56
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.56
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.55
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.54
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.53
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.51
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.51
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.47
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.45
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.45
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.45
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.41
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.38
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.36
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.36
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.33
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.31
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.25
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.21
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.21
PTZ00429	746	beta-adaptin; Provisional	99.19
PTZ00429	746	beta-adaptin; Provisional	99.16
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.07
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.04
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.98
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.97
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.95
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.93
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.92
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.89
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.88
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.87
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.8
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.79
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.77
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.77
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.7
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.66
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.65
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.62
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.6
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.59
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.59
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.59
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.56
TIGR02270	410	conserved hypothetical protein. Members are found	98.55
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.54
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.51
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.5
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.48
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.46
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.45
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.43
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.4
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.38
PF05536	543	Neurochondrin: Neurochondrin	98.35
COG5369	743	Uncharacterized conserved protein [Function unknow	98.33
TIGR02270	410	conserved hypothetical protein. Members are found	98.33
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.32
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.31
COG5369	743	Uncharacterized conserved protein [Function unknow	98.31
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.31
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.25
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.23
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.22
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.19
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.18
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.17
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	98.16
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.15
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.11
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.09
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.08
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.0
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.99
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.98
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.98
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.97
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.96
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.9
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.89
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.86
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.83
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.8
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.79
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.78
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.76
PF05536	543	Neurochondrin: Neurochondrin	97.75
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.75
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.74
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.74
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.74
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.69
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.69
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.68
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.67
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.63
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.63
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.61
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.57
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.47
KOG0567	289	consensus HEAT repeat-containing protein [General	97.47
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.45
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.45
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.43
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.43
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.42
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.41
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.41
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.4
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.35
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.34
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.27
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.24
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.19
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.15
KOG0567	289	consensus HEAT repeat-containing protein [General	97.11
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.08
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.05
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.04
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.01
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.94
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.89
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.77
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.63
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.63
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.61
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.6
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.59
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.54
PF05004	309	IFRD: Interferon-related developmental regulator (	96.52
KOG2025	892	consensus Chromosome condensation complex Condensi	96.5
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.48
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.45
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.44
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.41
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.4
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.34
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.28
PRK14707	2710	hypothetical protein; Provisional	96.27
PF05004	309	IFRD: Interferon-related developmental regulator (	96.16
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.06
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.05
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.05
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.04
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.97
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.83
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.75
KOG3036	293	consensus Protein involved in cell differentiation	95.74
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.71
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.53
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.52
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.47
KOG3036	293	consensus Protein involved in cell differentiation	95.46
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.42
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.42
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.41
PRK14707	2710	hypothetical protein; Provisional	95.39
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.39
KOG2956	516	consensus CLIP-associating protein [General functi	95.32
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.19
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.18
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.13
KOG1243	690	consensus Protein kinase [General function predict	95.13
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.1
KOG2956	516	consensus CLIP-associating protein [General functi	95.07
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.0
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.96
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.92
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.75
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.62
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.55
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.55
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.33
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.3
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.1
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.05
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.05
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.0
KOG2025	892	consensus Chromosome condensation complex Condensi	94.0
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.9
COG5098	1128	Chromosome condensation complex Condensin, subunit	93.68
KOG1243	690	consensus Protein kinase [General function predict	93.6
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	93.52
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.48
COG5116	926	RPN2 26S proteasome regulatory complex component [	93.42
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.4
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	93.28
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	92.93
PF08045	257	CDC14: Cell division control protein 14, SIN compo	92.89
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.86
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.83
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.77
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.73
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	92.5
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.44
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.33
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	92.3
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.29
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.07
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	91.76
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.72
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	91.43
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	91.06
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	90.72
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	90.64
KOG2137	700	consensus Protein kinase [Signal transduction mech	90.56
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	90.56
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	90.47
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	90.34
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	90.31
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	90.19
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	90.12
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	90.04
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	90.03
KOG2933	334	consensus Uncharacterized conserved protein [Funct	89.88
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	89.8
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	89.54
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	89.22
KOG0413	1529	consensus Uncharacterized conserved protein relate	89.02
PF07814	361	WAPL: Wings apart-like protein regulation of heter	88.85
KOG2933	334	consensus Uncharacterized conserved protein [Funct	88.73
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.26
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	88.02
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	87.96
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	87.87
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	87.58
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	87.47
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	87.2
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	87.19
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	87.01
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	86.96
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	86.95
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	86.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	86.7
KOG2137	700	consensus Protein kinase [Signal transduction mech	86.44
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	86.42
KOG1988	970	consensus Uncharacterized conserved protein [Funct	85.85
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	85.32
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	85.05
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	84.75
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	84.57
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.52
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	84.39
KOG2005	878	consensus 26S proteasome regulatory complex, subun	84.13
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	83.38
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	82.94
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	82.82
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	82.25
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	81.79
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	81.67
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	81.41
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	81.23
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	80.77
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	80.21
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	80.03

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.3e-79  Score=579.39  Aligned_cols=475  Identities=52%  Similarity=0.773  Sum_probs=432.6

Q ss_pred             hhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhh-hccHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 035507          199 HSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTK-LEILPMMVAGVWSDDNNLQLEATTQFQKL  276 (684)
Q Consensus       199 ~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~lv~~L~s~~~~~~~~a~~~L~~l  276 (684)
                      ++..+.|.+.+|++||+||+ .++||||....++..+.+..+    ..++ -.-+|.+.+.|.|+|.+.|..|+..+|++
T Consensus        23 delRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~----meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~   98 (526)
T COG5064          23 DELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIP----MEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKL   98 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCc----hhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44567788899999999999 999999984322221111111    1111 12579999999999999999999999999


Q ss_pred             hcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHH
Q 035507          277 LSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAV  355 (684)
Q Consensus       277 ~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~  355 (684)
                      +|.+. |+++.++++|++|++++++........+++|+|+|+|+++++..++..+++.|++|.++++|.+++.+|+++++
T Consensus        99 LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQav  178 (526)
T COG5064          99 LSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAV  178 (526)
T ss_pred             hccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHH
Confidence            99887 99999999999999999995544368999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC-chHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCcHH
Q 035507          356 WALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT-ELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQ  433 (684)
Q Consensus       356 ~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~-~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~  433 (684)
                      |+|||+|++++.+|+.++..|++.+++.++..+. +..+.+++.|+|+|||++. |.+....+...+|.|.+++.+.|++
T Consensus       179 WALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~e  258 (526)
T COG5064         179 WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPE  258 (526)
T ss_pred             HHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHH
Confidence            9999999999999999999999999999996543 4689999999999999999 8888889999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507          434 VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI  513 (684)
Q Consensus       434 v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~  513 (684)
                      +..+|||+++|++ +++.+.++.+++.|+.++|+++|.+++..++.+|++.+||++++++.+++.++++|+++.+..+|.
T Consensus       259 vlvDA~WAiSYls-Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs  337 (526)
T COG5064         259 VLVDACWAISYLS-DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS  337 (526)
T ss_pred             HHHHHHHHHHHhc-cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc
Confidence            9999999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC--CHHHHHHHHHCCCh
Q 035507          514 HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG--THDQIKYLVTEGCI  591 (684)
Q Consensus       514 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~g~l  591 (684)
                      ++ ...+|++|||+++||++|+.++++++++++++|+|+++|+..+..++++||||+.|.++++  .|+..++|++.|++
T Consensus       338 ~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~I  416 (526)
T COG5064         338 SP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFI  416 (526)
T ss_pred             Ch-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccch
Confidence            99 8899999999999999999999999999999999999999999999999999999999976  58899999999999


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          592 KPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       592 ~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                      ++|+++|...+.++.+.+++++.++++.++.......  ...|.|+.++++.||++.|..+|.+.|.+||.+|+.||++|
T Consensus       417 kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~f  494 (526)
T COG5064         417 KPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKF  494 (526)
T ss_pred             hHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987653321  34678999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCC
Q 035507          672 WCGRVVGPQL  681 (684)
Q Consensus       672 f~~e~~~~~~  681 (684)
                      |++||.-+.+
T Consensus       495 FgeeD~vd~l  504 (526)
T COG5064         495 FGEEDAVDEL  504 (526)
T ss_pred             cccchhhhhc
Confidence            9888754434

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-76  Score=607.48  Aligned_cols=479  Identities=60%  Similarity=0.882  Sum_probs=437.2

Q ss_pred             hhhhcccccchhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhcCCCHHHHH
Q 035507          189 KVQLKTWDKEHSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQL  267 (684)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~  267 (684)
                      +.+.+. .+.++..++|.+..||+||+||+ .+.|||+..++...  +..   ...........+.++..+.|+++..+.
T Consensus        11 ~~k~~~-~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~S~~~~~q~   84 (514)
T KOG0166|consen   11 RYKNKG-VDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELML--DEL---LSDSQSQASNLELMLAALYSDDPQQQL   84 (514)
T ss_pred             HHhhcc-ccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccc--ccc---cchhHHHhhhhHHHHHHHhCCCHHHHH
Confidence            344443 33444567788899999999999 99999992221111  110   111122223478899999999999999


Q ss_pred             HHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCC
Q 035507          268 EATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP  346 (684)
Q Consensus       268 ~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~  346 (684)
                      .|+..+|++++... |+++.++..|++|.+|++|...+++.+|.+|+|+|+|||+++++++..++++|++|.|+.++.++
T Consensus        85 ~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~  164 (514)
T KOG0166|consen   85 TATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP  164 (514)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC
Confidence            99999999999877 99999999999999999998776699999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHH
Q 035507          347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQ  425 (684)
Q Consensus       347 ~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~  425 (684)
                      +..++++|+|+|+|++++++.+|+.+++.|++.+|+.++..+....+.++++|+|+|||+++ |.+.+..+..++|+|..
T Consensus       165 ~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~  244 (514)
T KOG0166|consen  165 SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR  244 (514)
T ss_pred             cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999976666789999999999999999 88999999999999999


Q ss_pred             HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCCh
Q 035507          426 LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV  505 (684)
Q Consensus       426 lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l  505 (684)
                      ++++.|++++.+|||+++|++ +++++.++.+++.|++|.|+.+|.+.+..++.+|++++||+++|++.+++.++++|++
T Consensus       245 ll~~~D~~Vl~Da~WAlsyLs-dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L  323 (514)
T KOG0166|consen  245 LLHSTDEEVLTDACWALSYLT-DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGAL  323 (514)
T ss_pred             HHhcCCHHHHHHHHHHHHHHh-cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChH
Confidence            999999999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHH
Q 035507          506 PCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYL  585 (684)
Q Consensus       506 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  585 (684)
                      |.|..++...+...++++|||+++||++|+++++++++++|++|.|+++|+.+++++|++|+||++|++.+|++++..||
T Consensus       324 ~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yL  403 (514)
T KOG0166|consen  324 PVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYL  403 (514)
T ss_pred             HHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHH
Confidence            99999998553777999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 035507          586 VTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV  665 (684)
Q Consensus       586 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~  665 (684)
                      ++.|++++|+++|...|++++.++++++++|++.++.....    +. ++++.+++++||+++|+.||+|+|.+||++|+
T Consensus       404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~  478 (514)
T KOG0166|consen  404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAY  478 (514)
T ss_pred             HHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHHHHHHHHccChhHHHHhhccccHHHHHHHH
Confidence            99999999999999999999999999999999999987642    12 88999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCC
Q 035507          666 KILETYWCGRVVGP  679 (684)
Q Consensus       666 ~ii~~~f~~e~~~~  679 (684)
                      +||++||.+|+.++
T Consensus       479 ~II~~yf~~e~~~~  492 (514)
T KOG0166|consen  479 KIIDTYFSEEDDED  492 (514)
T ss_pred             HHHHHhcCCCcccc
Confidence            99999999886544

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-44  Score=370.84  Aligned_cols=372  Identities=26%  Similarity=0.385  Sum_probs=335.5

Q ss_pred             hhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507          247 KLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       247 ~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      ..|.+|.+|..+.. .++.+|++|+|+|.+++++.......++++|++|.|+.++.+++ ..++++|+|+|+|++.+++.
T Consensus       107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~  185 (514)
T KOG0166|consen  107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPD  185 (514)
T ss_pred             HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChH
Confidence            44899999999985 55999999999999999999888999999999999999999999 89999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhcCCCCh-HHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          326 NTKVVIEHDAVPIFVKLLASPSD-DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~~~~~-~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      +|+.+++.|+++.|+.++..++. ...+++.|+|.|+|.........-.-..+++.|..++ .+.|.+++..|+|++++|
T Consensus       186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyL  264 (514)
T KOG0166|consen  186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYL  264 (514)
T ss_pred             HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence            99999999999999999988665 7888999999999977632223333345677777777 899999999999999999


Q ss_pred             ccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC-CCCcccHhHHH
Q 035507          405 CRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG-HPSPSVLTPAL  482 (684)
Q Consensus       405 ~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al  482 (684)
                      +.+.+. .......|++|.|+++|.+.++.++..|+++++|++ .+++.+++.+++.|++|.|..++. ++...++..||
T Consensus       265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv-tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc  343 (514)
T KOG0166|consen  265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV-TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC  343 (514)
T ss_pred             hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee-eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence            998743 444455999999999999999999999999999999 999999999999999999999998 66777999999


Q ss_pred             HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507          483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFD  561 (684)
Q Consensus       483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~  561 (684)
                      |+|+|++.|+..+.++++++|++|.|+.+|+.. +.++|++|+|+++|++. ++++++.++++.|++++++.+|...|.+
T Consensus       344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~  422 (514)
T KOG0166|consen  344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVK  422 (514)
T ss_pred             HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChH
Confidence            999999999999999999999999999999999 99999999999999987 7899999999999999999999888999


Q ss_pred             HHHHHHHHHHHhhcCCC-------HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          562 IKEEAAWAISNASSRGT-------HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       562 v~~~a~~aL~nl~~~~~-------~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      +...+..++.|+...+.       .....++.+.|+++.+..+..+.+.++...|..++.+++..++.
T Consensus       423 ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~  490 (514)
T KOG0166|consen  423 IILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDD  490 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCcc
Confidence            99999999999987542       33455677899999999999999999999999999999987643

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.2e-44  Score=344.25  Aligned_cols=399  Identities=24%  Similarity=0.315  Sum_probs=342.7

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCC
Q 035507          204 DDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVW-SDDNNLQLEATTQFQKLLSIESM  282 (684)
Q Consensus       204 ~~~~~~~~~r~~~r~~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~  282 (684)
                      +|++..++....-|..++|.-++|              .+...+.|.+|++++++. ......+++|+|+|.+++|+...
T Consensus        83 dDie~q~qav~kFR~~LS~E~~PP--------------Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~  148 (526)
T COG5064          83 DDIEQQLQAVYKFRKLLSKETSPP--------------IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ  148 (526)
T ss_pred             hHHHHHHHHHHHHHHHhccccCCC--------------chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc
Confidence            455555554444444566554433              233445689999999994 55667899999999999999988


Q ss_pred             cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCC--ChHHHHHHHHHHHH
Q 035507          283 PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP--SDDVREQAVWALGN  360 (684)
Q Consensus       283 ~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~a~~~L~n  360 (684)
                      ..+.++++|++|.++++|.+++ .+++++|+|+|+|++.+++.+|+.+.+.|++.+++.++.+.  +..+.+++.|.|+|
T Consensus       149 QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN  227 (526)
T COG5064         149 QTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN  227 (526)
T ss_pred             ceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence            8888999999999999999998 89999999999999999999999999999999999998874  45788999999999


Q ss_pred             hhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHH
Q 035507          361 VAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDAC  439 (684)
Q Consensus       361 La~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al  439 (684)
                      +|+......+.-.-..+++.|..++ ...|+++...|+|++++|+.+... .......++.+.|+.+|.+++..++..|+
T Consensus       228 lcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPal  306 (526)
T COG5064         228 LCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL  306 (526)
T ss_pred             hhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence            9965422222222233566666666 888999999999999999999733 33334478888999999999999999999


Q ss_pred             HHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh
Q 035507          440 WALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS  519 (684)
Q Consensus       440 ~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~  519 (684)
                      +.++|+. .+++.+.+.+++.|+++.+-.+|.++...+++.|||+++|++.++.++.+++++.+++|.|+.+|.+. +..
T Consensus       307 R~vGNIV-TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k  384 (526)
T COG5064         307 RSVGNIV-TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYK  384 (526)
T ss_pred             HhhcCee-ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHH
Confidence            9999999 99999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCH----------HHHHHHH
Q 035507          520 IKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTH----------DQIKYLV  586 (684)
Q Consensus       520 v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~----------~~~~~l~  586 (684)
                      ++++|||+++|.+.   +.|+++.++++.|++.+|..+|.-.+.++-+.++.++.|+...|..          .+..++.
T Consensus       385 ~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE  464 (526)
T COG5064         385 IKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVE  464 (526)
T ss_pred             HHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHH
Confidence            99999999999987   3689999999999999999999999999999999999999987643          3445556


Q ss_pred             HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507          587 TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       587 ~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      +.|+++.+..+.++.+.++...+..++..++..+
T Consensus       465 ~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee  498 (526)
T COG5064         465 KAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE  498 (526)
T ss_pred             hcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence            6999999999999999999999999999988543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=6.3e-39  Score=376.70  Aligned_cols=406  Identities=22%  Similarity=0.260  Sum_probs=347.9

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507          247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN  326 (684)
Q Consensus       247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  326 (684)
                      +.|.+|.++.+|.++++..|..|++++.+++....+++..+++.|++|.|+++|++++++.+|++|+|+|++|+++++++
T Consensus       187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            45899999999999999999999999988887766789999999999999999987654799999999999999999999


Q ss_pred             HHHHHhcCChHHHHHhcCCCC---------hHHHHHHHHHHHHhhCCCCC-----------CchhH---hhcCCHHHHHH
Q 035507          327 TKVVIEHDAVPIFVKLLASPS---------DDVREQAVWALGNVAADSSG-----------CRDLV---LSEGALIPLLA  383 (684)
Q Consensus       327 ~~~i~~~g~i~~Li~lL~~~~---------~~v~~~a~~~L~nLa~~~~~-----------~r~~i---~~~g~l~~Ll~  383 (684)
                      +..+++.|++|.|+.++.+++         ..++++|+|+|+|||++.+.           .|+..   ...|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999998654         34699999999999987533           33322   34577888877


Q ss_pred             HhccCCchHHH----HHHHHHHHHhccCC-CCCChhh-------------------hhchHHHHHHHhcCCcHHHHHHHH
Q 035507          384 QLNEHTELSML----RIATTTLSNLCRGK-PRPLFDQ-------------------VRPALPALAQLIHSNDEQVLTDAC  439 (684)
Q Consensus       384 ~L~~~~~~~v~----~~a~~~L~nL~~~~-~~~~~~~-------------------~~~~l~~L~~lL~~~d~~v~~~al  439 (684)
                      .+. .++...+    ..++|+|.+|+++. +......                   ..++++.|+.++...+.+++.+++
T Consensus       347 l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            774 3333333    36789999999987 3331211                   145677888899999999999999


Q ss_pred             HHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh
Q 035507          440 WALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS  519 (684)
Q Consensus       440 ~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~  519 (684)
                      |+|++++ +++++..+.+.+.|++|.|+++|.+++..++..|+++++|++.+++++++.++++|++|.|+++|.++ +..
T Consensus       426 ~aL~~L~-~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~  503 (2102)
T PLN03200        426 RALSSLC-CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQK  503 (2102)
T ss_pred             HHHHHHh-CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHH
Confidence            9999999 99999999999999999999999999999999999999999999998999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHH-HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 035507          520 IKKEVSWIISNIACGNREQIQAVI-DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL  598 (684)
Q Consensus       520 v~~~a~~~L~nl~~~~~~~~~~l~-~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL  598 (684)
                      ++++|+|+|+|++.+. ++++.++ +.|++|.|+++|.++++++++.|+|+|.|++..++.+.         ++++++++
T Consensus       504 iqeeAawAL~NLa~~~-~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LL  573 (2102)
T PLN03200        504 AKEDSATVLWNLCCHS-EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALL  573 (2102)
T ss_pred             HHHHHHHHHHHHhCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHh
Confidence            9999999999999975 4455555 78999999999999999999999999999998776553         47788899


Q ss_pred             cCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 035507          599 QCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGR  675 (684)
Q Consensus       599 ~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e  675 (684)
                      .++++.++..++.++.+++...+...          .........||++.|.+|+.|+++++++.|.++|.+||...
T Consensus       574 lsdd~~~~~~aL~vLgnIlsl~~~~d----------~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        574 LGDLPESKVHVLDVLGHVLSVASLED----------LVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cCCChhHHHHHHHHHHHHHhhcchhH----------HHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999998765432          11223445799999999999999999999999999999754

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.6e-37  Score=364.97  Aligned_cols=416  Identities=19%  Similarity=0.207  Sum_probs=371.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      +.++.++.++.+.+.+.|..++++|+.++..+...++.+++.|++|.|+++|++++ +.+|..|+|+|++++.++++++.
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~  482 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKW  482 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            56788999999999999999999999998887788999999999999999999988 89999999999999998999999


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .+++.|++|.|+++|.+++..+++.|+|+|+|++.++++.+..+...|++++|+.+| .+.+...+..++|+|.+++...
T Consensus       483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~  561 (2102)
T PLN03200        483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTA  561 (2102)
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999998888888888899999999999 5668899999999999997543


Q ss_pred             CCCC-----------------------------------h---hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507          409 PRPL-----------------------------------F---DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN  450 (684)
Q Consensus       409 ~~~~-----------------------------------~---~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~  450 (684)
                      ....                                   .   ....+++|.|++++.++++.++..|+|+|.+++ .+.
T Consensus       562 d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~-a~~  640 (2102)
T PLN03200        562 DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF-SSR  640 (2102)
T ss_pred             chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCC
Confidence            1110                                   0   012579999999999999999999999999999 888


Q ss_pred             hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh-hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       451 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                      .++.+.++..|+++.++.+|.+.+..++..|+++|+|++.+.. .+...+++.|+++.|+++|.+. +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999996444 4566788999999999999998 9999999999999


Q ss_pred             HHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHH-H-HHHHHCCChHHHHhhccCCChHHHH
Q 035507          530 NIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQ-I-KYLVTEGCIKPLCDLLQCADPKIVT  607 (684)
Q Consensus       530 nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~g~l~~L~~lL~~~~~~v~~  607 (684)
                      |++... +....+...|+++.|++++.+++++.|+.|+|+|.+++.+++.++ . .++...|.+.+|+++|+..|.+...
T Consensus       720 nLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            999865 566777888999999999999999999999999999999876555 3 6677899999999999999988877


Q ss_pred             H--HHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 035507          608 V--CLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGR  675 (684)
Q Consensus       608 ~--al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e  675 (684)
                      .  ++++|..+.+......      ...++++..+|..++++.|.....|.+|.++++|.+||+++..+.
T Consensus       799 ~~~al~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        799 TSEALEALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            6  9999999998655443      245789999999999999965669999999999999999998764

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.8e-28  Score=233.77  Aligned_cols=362  Identities=20%  Similarity=0.221  Sum_probs=315.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ...++...+++.++.+|..|..++.+++-.. ++.-.+++.+++..|+.-+..+. .++|..|+.|++|++.. ++++..
T Consensus        86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn~-enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk~k  162 (550)
T KOG4224|consen   86 SNEPVLALLQSCDKCIQCAAGEALGNLAVNM-ENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNKVK  162 (550)
T ss_pred             hhhHHHHHHhCcchhhhhhhhhhhccceecc-CCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccchhh
Confidence            4456777889999999999999999876543 45555667777777776666666 58999999999999994 788999


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      +...|++.+++.+-++.+..+|.++..+|.|+....+ .|+.+...|+++.|+.++ ...|.+++..++.+++|++-...
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~E-nRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~  240 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE-NRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRR  240 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh-hhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHH
Confidence            9999999999998888999999999999999976554 488889999999999999 88899999999999999987763


Q ss_pred             CCChhhh--hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          410 RPLFDQV--RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       410 ~~~~~~~--~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      .+.....  +.++|.|++++.++++.++-.|..+|++++  .+.++...+.++|.+|.++++++++........+.|+.|
T Consensus       241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla--sdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn  318 (550)
T KOG4224|consen  241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLA--SDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN  318 (550)
T ss_pred             HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhc--ccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence            3333333  459999999999999999999999999999  566777789999999999999999998899999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA  567 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~  567 (684)
                      ++-+.- ..-.++++|++.+|+.+|...++.+++-.|..+|.|+++........+++.|.+|.++.++-++..+++.+..
T Consensus       319 isihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis  397 (550)
T KOG4224|consen  319 ISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS  397 (550)
T ss_pred             cccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence            986554 4456789999999999999886777999999999999998888999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          568 WAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       568 ~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                      .++..++.  +.....++.+.|+++.|+.++.+.+.+++..+..+|.++....+
T Consensus       398 ac~a~Lal--~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  398 ACIAQLAL--NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             HHHHHHHh--ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence            99999987  45667889999999999999999999999999999999886543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.4e-27  Score=228.34  Aligned_cols=364  Identities=21%  Similarity=0.273  Sum_probs=317.7

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507          247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN  326 (684)
Q Consensus       247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  326 (684)
                      .+..+..++..+.++..++|..|+.++++++.. ..++..+...|++.++.++-++.+ ..+|..|..+|.|+.. +.++
T Consensus       124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~En  200 (550)
T KOG4224|consen  124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SREN  200 (550)
T ss_pred             eccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhh
Confidence            456788888888888899999999999999887 467788899999999999777777 7999999999999997 8899


Q ss_pred             HHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcC--CHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          327 TKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEG--ALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       327 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g--~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      |+.++.+|++|.|+.++.+++..+|+.|..+++||+-+... |+.+.+.+  .++.|++++ .+++..++..|.-+|.|+
T Consensus       201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~-Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnl  278 (550)
T KOG4224|consen  201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA-RKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNL  278 (550)
T ss_pred             hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH-HHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999977654 77788877  899999999 788889999999999999


Q ss_pred             ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHH
Q 035507          405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALW  483 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~  483 (684)
                      +....-.......+.+|.++++++++..........++.|++  -.+-+.-.+++.|++..|+.+|... ++.++..|..
T Consensus       279 asdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnis--ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  279 ASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNIS--IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             cccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcc--cccCcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence            988654555566899999999999998888888999999998  4455566788999999999999875 4559999999


Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHH
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIK  563 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~  563 (684)
                      +|.|++.........+..+|.+|.+..++.+. ...+|.+...+++.++-.. ....++.+.|++|.|+.+..+.+.+++
T Consensus       357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~  434 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVR  434 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhc
Confidence            99999998888899999999999999999998 8899999999999887653 567789999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHH------CCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          564 EEAAWAISNASSRGTHDQIKYLVT------EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       564 ~~a~~aL~nl~~~~~~~~~~~l~~------~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                      ..|+.||.|++.  +.++..++++      .|+-..|...+.+.+.-+...+.|++..+++...
T Consensus       435 gNaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  435 GNAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             ccHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence            999999999998  4555555544      4556677788888888889999999998887643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=4e-22  Score=218.43  Aligned_cols=388  Identities=21%  Similarity=0.203  Sum_probs=318.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI  331 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~  331 (684)
                      ..+-..+...+ .+...|...|.+++... .....+.+.|+++.|+++|++++ .++...++.+|.+++- ..+++..+.
T Consensus       253 kk~~~l~~kQe-qLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~  328 (708)
T PF05804_consen  253 KKLQTLIRKQE-QLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMA  328 (708)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence            34444444433 44456778888977654 56677899999999999999887 8999999999999998 778999999


Q ss_pred             hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC
Q 035507          332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP  411 (684)
Q Consensus       332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~  411 (684)
                      +.|+++.|+.++.+++..++..++++|.|++.+... |..+.+.|.++.|+.+|.+   +..+..++.+|.++|.....+
T Consensus       329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~-R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~r  404 (708)
T PF05804_consen  329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL-RSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEAR  404 (708)
T ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH-HHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhhH
Confidence            999999999999999999999999999999988754 8999999999999999943   345567899999999987666


Q ss_pred             ChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507          412 LFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM  490 (684)
Q Consensus       412 ~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  490 (684)
                      ......+++|.+++++. .+++.+...+++.+.|++  .+..+.+.+.+.|+++.|+........   ...+.++.|++.
T Consensus       405 ~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa--~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~  479 (708)
T PF05804_consen  405 SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA--LNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ  479 (708)
T ss_pred             HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh--cCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence            66666789999998765 456777788889999999  667888889998999999988654332   234579999998


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHH
Q 035507          491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAW  568 (684)
Q Consensus       491 ~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~  568 (684)
                      +++.....+.  +.+..|+.++..+.+.+..-++..+|+|++..+.+..+.+-+.+++|.|.+.|..+  ++++.-+++.
T Consensus       480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            8754333333  47777888887766888999999999999986656666666789999999999876  6789999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchH
Q 035507          569 AISNASSRGTHDQIKYLVTEGCIKPLCDLLQC--ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL  646 (684)
Q Consensus       569 aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~--~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~  646 (684)
                      .+++++.  +++.+..+.+.|+++.|+++++.  .|.+++..++.++.+++...+..             ...+.+.++.
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~  622 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIP  622 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchH
Confidence            9999987  77888888999999999999985  57899999999999999986543             3667888999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHH
Q 035507          647 EKIENLQSHDNNEIHEKSVKILE  669 (684)
Q Consensus       647 ~~L~~L~~~~~~~i~~~a~~ii~  669 (684)
                      ..+-+|.++.|++|++.|...++
T Consensus       623 ~ylidL~~d~N~~ir~~~d~~Ld  645 (708)
T PF05804_consen  623 AYLIDLMHDKNAEIRKVCDNALD  645 (708)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999877665554

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.91  E-value=5.1e-22  Score=217.62  Aligned_cols=415  Identities=21%  Similarity=0.244  Sum_probs=320.9

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507          246 TKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       246 ~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      .+-+.++.|++.|.+++.++...++..|.++ |....+...|.+.|+++.|++++.+++ .+++..|+++|.|++. +++
T Consensus       287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~  363 (708)
T PF05804_consen  287 VNKGIVSLLVKCLDRENEELLILAVTFLKKL-SIFKENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPE  363 (708)
T ss_pred             HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHH
Confidence            3457899999999999999999999999995 444568999999999999999999988 8999999999999999 889


Q ss_pred             hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507          326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC  405 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~  405 (684)
                      .|..++..|++|.|+.+|.++  ..+..|+.+|.+++.+.. +|.++...++++.++..+..+++..+...+++++.|++
T Consensus       364 ~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa  440 (708)
T PF05804_consen  364 LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA  440 (708)
T ss_pred             HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence            999999999999999999865  455679999999998764 58888889999999999878888888888999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHH
Q 035507          406 RGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWT  484 (684)
Q Consensus       406 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~  484 (684)
                      ............++++.|++........+   .+..+.|++ ..+......+.  +++..|+.++.. ++++....++.+
T Consensus       441 ~~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS-~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGi  514 (708)
T PF05804_consen  441 LNKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNIS-QHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGI  514 (708)
T ss_pred             cCHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHH-hcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHH
Confidence            99755555555688898887655433322   335788888 65533333332  467777788766 467888899999


Q ss_pred             HHHHHcCChhhHHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHh
Q 035507          485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFD  561 (684)
Q Consensus       485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~  561 (684)
                      |+|+...+....+.+.+.+++|.+..+|..+. .+++.-+++..++.++. ++.....+.+.|+++.|+.++...  |.+
T Consensus       515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE  593 (708)
T PF05804_consen  515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDE  593 (708)
T ss_pred             HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHH
Confidence            99998766556666667899999999997652 55789999999998886 457777788999999999999865  799


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHH
Q 035507          562 IKEEAAWAISNASSRGTHDQIKYLV-TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLV  640 (684)
Q Consensus       562 v~~~a~~aL~nl~~~~~~~~~~~l~-~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i  640 (684)
                      +.-..++++..+..+  ++.+..++ +.++...|++++++.+++++..|-.+|.-+.+..+.....      ...-....
T Consensus       594 ~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r------i~~~kF~~  665 (708)
T PF05804_consen  594 IVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER------IRREKFRW  665 (708)
T ss_pred             HHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH------hhHHHHHH
Confidence            999999999999984  56666765 5889999999999999999999999999999987765321      11111222


Q ss_pred             HHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 035507          641 EEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVVGPQL  681 (684)
Q Consensus       641 ~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~~~~~~  681 (684)
                      .....++.++.=+...+..-.....+..+.||..+|.-+..
T Consensus       666 hN~~WLe~v~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  706 (708)
T PF05804_consen  666 HNAQWLEMVESQQLDDNDDYLDYGDDIFEEYFLRSDILDRP  706 (708)
T ss_pred             HHHHHHHHHhcccccccccccCCCCcccccccchhhhhhCC
Confidence            23445666654333333332222334444555555544433

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=3.2e-18  Score=181.67  Aligned_cols=389  Identities=20%  Similarity=0.279  Sum_probs=310.1

Q ss_pred             cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          250 ILPMMVAGVWSD-DNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       250 ~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .+..|+..|+.. |+..|++|+..++.+++..+ .....+--..++|.|+.+|++.++.++...|++||++++..-|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            467888888865 99999999999999988765 3333333345899999999999889999999999999999999999


Q ss_pred             HHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          328 KVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      ..+++.++||.|+.-|. -...++.|+++.+|-.|+++.+.   .+++.|++...+..+ +..+..+++.|+.+..|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998554 48899999999999999988764   678999999999998 67788899999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC---ChHHHHHHHHhchHHHHHHhcCCCC----cccHh
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR---NNDKIQAVIEAGVCGRLVELLGHPS----PSVLT  479 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~---~~~~~~~~~~~g~l~~L~~lL~~~~----~~v~~  479 (684)
                      .-+...+..+...+|.|..+|...|....+.+|.++.+++ ++   .++..+.+...|.+....+++.-..    ..+..
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~-d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIA-DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH-HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence            9888888889999999999999999999999999999998 54   4567788888899999999986542    34556


Q ss_pred             HHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC---C----------h-hHHHHHH--------------------
Q 035507          480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH---K----------N-SIKKEVS--------------------  525 (684)
Q Consensus       480 ~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~---~----------~-~v~~~a~--------------------  525 (684)
                      ..++.+.-++.+++.....+...++...|..+|....   +          + ++-.-..                    
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~  482 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS  482 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence            6778888888888877777777777777776663210   0          0 0000000                    


Q ss_pred             -------------------------------HHHHHH----------------------hcCChHHHHHHHHhCCHHHHH
Q 035507          526 -------------------------------WIISNI----------------------ACGNREQIQAVIDAGLIGPLV  552 (684)
Q Consensus       526 -------------------------------~~L~nl----------------------~~~~~~~~~~l~~~g~l~~Li  552 (684)
                                                     ..+..+                      ....|+-.+.++. .++|.|+
T Consensus       483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv  561 (1051)
T KOG0168|consen  483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV  561 (1051)
T ss_pred             hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence                                           011100                      0011233333333 3799999


Q ss_pred             HHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHH-CCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCC
Q 035507          553 NLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVT-EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDI  630 (684)
Q Consensus       553 ~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~  630 (684)
                      ++..+. ++.||..++.||..++...+.+.+..++. ..+-..+-.+|.+.|..++..++....-+++.-..        
T Consensus       562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd--------  633 (1051)
T KOG0168|consen  562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD--------  633 (1051)
T ss_pred             HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH--------
Confidence            999876 99999999999999999888888887764 55667778899999999999999999999986543        


Q ss_pred             cchhHHHHHHHHhchHHHHHHhhcCC
Q 035507          631 GDINQFAQLVEEAEGLEKIENLQSHD  656 (684)
Q Consensus       631 ~~~~~~~~~i~~~g~~~~L~~L~~~~  656 (684)
                          .|...|.+.|++..+..|....
T Consensus       634 ----~F~~~F~REGV~~~v~~L~~~~  655 (1051)
T KOG0168|consen  634 ----TFSPSFRREGVFHAVKQLSVDS  655 (1051)
T ss_pred             ----HhhhhHhhhhHHHHHHHHhccC
Confidence                3889999999999999997633

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.80  E-value=2.6e-18  Score=183.85  Aligned_cols=404  Identities=22%  Similarity=0.243  Sum_probs=293.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch--hH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE--NT  327 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~--~~  327 (684)
                      .+|+.+.+|.+.++.+|-.|+..+..+..++......+.+.|.|+.||.+|.+.. .++|.+|+++|.|+..++..  ++
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccc
Confidence            6799999999999999999999998887777777778889999999999999998 89999999999999997666  88


Q ss_pred             HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-------------CchHH
Q 035507          328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-------------TELSM  393 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-------------~~~~v  393 (684)
                      -.+.+.++|+.++++|.. .|.++++.+..+|+||+..+ .++..+ ...++..|.......             .+.++
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~i-i~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v  390 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLI-ITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV  390 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHH-HHHHHHHHHHhhcccccccCCCCccccccccee
Confidence            999999999999999987 78999999999999999874 333333 334556665554311             13678


Q ss_pred             HHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhc------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH
Q 035507          394 LRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIH------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR  465 (684)
Q Consensus       394 ~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~  465 (684)
                      ..+++.+|.|++...  ....+....|++..|+..++      +.|....++++..+.|++ ..-    +..+....-+.
T Consensus       391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLS-Yrl----~~Evp~~~~~~  465 (717)
T KOG1048|consen  391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLS-YRL----EAEVPPKYRQV  465 (717)
T ss_pred             eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcC-chh----hhhcCHhhhhH
Confidence            899999999999865  33445556889999988876      346778899999999998 321    11111111111


Q ss_pred             HHHhcCCCCcccHhHHHHHHHHHHcCC---------------hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507          466 LVELLGHPSPSVLTPALWTVGNIVMGD---------------DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN  530 (684)
Q Consensus       466 L~~lL~~~~~~v~~~al~~L~nl~~~~---------------~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  530 (684)
                      +...=......-......+.+.-....               +.....+....++.....+|....+..+.+.++.+|-|
T Consensus       466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN  545 (717)
T KOG1048|consen  466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN  545 (717)
T ss_pred             hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence            111110000000002222232222210               11112223334566656666544478899999999999


Q ss_pred             HhcCChH----HHHHH-HHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC----
Q 035507          531 IACGNRE----QIQAV-IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA----  601 (684)
Q Consensus       531 l~~~~~~----~~~~l-~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~----  601 (684)
                      ++++...    ....+ .+..++|.|++++..++..+.+.++.+|.|++..  .... .++..++++.|++.|...    
T Consensus       546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk-~ligk~a~~~lv~~Lp~~~~~~  622 (717)
T KOG1048|consen  546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNK-ELIGKYAIPDLVRCLPGSGPST  622 (717)
T ss_pred             hhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhh-hhhhcchHHHHHHhCcCCCCCc
Confidence            9985322    23333 4667899999999999999999999999999983  3433 345578999999999754    


Q ss_pred             --ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCCC
Q 035507          602 --DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH-DNNEIHEKSVKILETYWCGRVV  677 (684)
Q Consensus       602 --~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii~~~f~~e~~  677 (684)
                        +.+++..++.+|.+++.....             .+..+-+.+|+++|..|..+ .++.+.+.|...+..+|.+.+.
T Consensus       623 ~~sedtv~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  623 SLSEDTVRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             CchHHHHHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence              357899999999999965433             45777889999999999544 5678999999999998876553

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.71  E-value=6.3e-14  Score=152.91  Aligned_cols=396  Identities=15%  Similarity=0.165  Sum_probs=298.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507          253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE  332 (684)
Q Consensus       253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~  332 (684)
                      .+...+++.+.+....++..|.+++....+. . + ..+..+.|...|.+++ +.+|..|++.+.+++.++......+.+
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~-~-l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~  117 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSALSPD-S-L-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVD  117 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhccCHH-H-H-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence            3777888888888888889999988865422 2 2 5677899999999988 999999999999999977777888889


Q ss_pred             cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC-
Q 035507          333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP-  411 (684)
Q Consensus       333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~-  411 (684)
                      .++++.++..+.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++...+.. 
T Consensus       118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            999999999999999999999999999999887664 4566777778888887 4456677888999999998876332 


Q ss_pred             ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCccc-----H-hHHHHHH
Q 035507          412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSV-----L-TPALWTV  485 (684)
Q Consensus       412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v-----~-~~al~~L  485 (684)
                      ......|+++.++..+.++|.-++.+++.++..++ . .+...+.+.+.|+++.|..++.+.+.+.     . ...+...
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La-~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELA-E-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHH-c-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            23333789999999999999999999999999999 5 7778899999999999999997643332     2 2334677


Q ss_pred             HHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH-HHh-----CCHHHHHHHhccCC
Q 035507          486 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV-IDA-----GLIGPLVNLLQNAE  559 (684)
Q Consensus       486 ~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-----g~l~~Li~ll~~~~  559 (684)
                      ++++...+...-... ..++..+..++.+. ++..+..|..+++.|+.. .+..+.+ ...     .++........++.
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            788875443322111 23555666677777 899999999999999854 4555555 332     23555555566678


Q ss_pred             HhHHHHHHHHHHHhhcCCCH---HH----HHHH---HHCCChH-HHHhhccCCChHHHHHHHHHHHHHHhcccccccCCC
Q 035507          560 FDIKEEAAWAISNASSRGTH---DQ----IKYL---VTEGCIK-PLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDS  628 (684)
Q Consensus       560 ~~v~~~a~~aL~nl~~~~~~---~~----~~~l---~~~g~l~-~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~  628 (684)
                      .++|..+..++.++...+..   +.    ....   ...+-.. .+.++++.+=|+++..++..+..++...-.      
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------  424 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------  424 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence            89999999999999765432   11    1111   1233445 788889888899999999999999976421      


Q ss_pred             CCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          629 DIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       629 ~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                             ........|.++.+-+=....+.+..+.-.+++++.-
T Consensus       425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence                   2345556677776665555667888777777777664

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.69  E-value=2e-13  Score=148.97  Aligned_cols=367  Identities=18%  Similarity=0.207  Sum_probs=278.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh
Q 035507          294 PRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL  373 (684)
Q Consensus       294 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~  373 (684)
                      +.+...|++.+ .+....++.+|..+... ......  ..+..+.|...|.++++.||..+++.+++++.++....+.+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            34778888776 66677888899988872 222222  456789999999999999999999999999988877677778


Q ss_pred             hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHH
Q 035507          374 SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK  453 (684)
Q Consensus       374 ~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~  453 (684)
                      +.+.++.++.++ .+++..+...|+.+|.+++...+........+.++.|..++...+..++..++.++.+++ ..+++.
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~-~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA-SHSPEA  194 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH-hcCHHH
Confidence            889999999998 888999999999999999987643333334566888999998888999999999999999 889999


Q ss_pred             HHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC-Ch---h-HHHHHHHHH
Q 035507          454 IQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KN---S-IKKEVSWII  528 (684)
Q Consensus       454 ~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~---~-v~~~a~~~L  528 (684)
                      .+.+.+.|+++.++..+.+++.-++..|+.++..++. .+...+.+.+.|+++.|..++.+.. ++   . .--......
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            9999999999999999999999999999999999999 6668899999999999999996652 22   1 112233566


Q ss_pred             HHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHH-HHCC-----ChHHHHhhccCCC
Q 035507          529 SNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYL-VTEG-----CIKPLCDLLQCAD  602 (684)
Q Consensus       529 ~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l-~~~g-----~l~~L~~lL~~~~  602 (684)
                      ++++...+..+.... ..++..+.+++.+.|...+..|..+++.+..  +.+....| ...+     ++..+.+...+..
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            777764444433222 2356677777888899999999999999986  56666665 3332     4666677777888


Q ss_pred             hHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhc--hHH-HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507          603 PKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE--GLE-KIENLQSHDNNEIHEKSVKILETYWCG  674 (684)
Q Consensus       603 ~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g--~~~-~L~~L~~~~~~~i~~~a~~ii~~~f~~  674 (684)
                      .+++..++.++..++.........    .-.+.....++..|  -.. .+..+.+.+=+|++-.|+.++...+..
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDN----DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            899999999999999876542110    00111122222222  122 566666777799999999998877543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK09687 putative lyase; Provisional

Probab=99.64  E-value=2.5e-14  Score=143.28  Aligned_cols=255  Identities=14%  Similarity=0.133  Sum_probs=203.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL  371 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~  371 (684)
                      -++.|..+|.+++ ..+|..|+++|..+..           ..+++.+..++.++++.+|..++++|+.+-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4678889998888 8999999999998865           24578888889999999999999999998532211    


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN  451 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~  451 (684)
                        ....++.|..++.++++..++..++.+|++++......    ...+++.+...+.++++.|+..++++|+.+. +  .
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-~--~  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-D--E  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-C--H
Confidence              11246677777668889999999999999997654222    2335666777788899999999999998876 2  1


Q ss_pred             HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 035507          452 DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNI  531 (684)
Q Consensus       452 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl  531 (684)
                               ..++.|+.+|.++++.++..|+.+||.+..+++         .+++.|+..+.+. +..||..|+++|+.+
T Consensus       159 ---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~  219 (280)
T PRK09687        159 ---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence                     267899999999999999999999999944333         3567899999988 999999999999997


Q ss_pred             hcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCChHHHHHHH
Q 035507          532 ACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ-CADPKIVTVCL  610 (684)
Q Consensus       532 ~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~-~~~~~v~~~al  610 (684)
                      ...           .++|.|++.+.+++  ++..|+.+|+++-.   ++         .++.|..+++ ++|+.++..+.
T Consensus       220 ~~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KDK-----------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CCh-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence            331           37899999998766  67889999998854   32         5788888886 78999999999


Q ss_pred             HHHHH
Q 035507          611 EGLEN  615 (684)
Q Consensus       611 ~~L~~  615 (684)
                      +++..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            88864

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=7.7e-14  Score=134.39  Aligned_cols=311  Identities=14%  Similarity=0.146  Sum_probs=253.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 035507          258 VWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVVIEHDAV  336 (684)
Q Consensus       258 L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i  336 (684)
                      -.+++..+-+.++.++..+....+    .+.++.+...++.+|.... +.++-...+.++..-|.+++.+|+.+++.++.
T Consensus       116 a~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  116 AESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            456778888899999988766543    4567888899999996532 36788888888988888899999999999999


Q ss_pred             HHHHHhcCC-CChHHHHHHHHHHHHhhCCCC---------CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          337 PIFVKLLAS-PSDDVREQAVWALGNVAADSS---------GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       337 ~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~---------~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      +.+.+.|.. +...+.+.+.|++.-+..++.         +....+...|++..|+..+.-..++.+...++.+|+.++-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999976655 445677889999999986653         2345677788899999999888889999999999999987


Q ss_pred             CCCCCChhhhhchHHHHHHHhcC-CcHH---HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC--CCCcccHhH
Q 035507          407 GKPRPLFDQVRPALPALAQLIHS-NDEQ---VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG--HPSPSVLTP  480 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~-~d~~---v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~  480 (684)
                      ....-......|++..++.++.+ ++..   ....++..|+.++  ++++....+++.|+.+.++.++.  ..+|.+...
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA--G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~  349 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA--GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE  349 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh--CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence            75444445568999999999986 3333   4567888899998  88888999999999999998874  367889999


Q ss_pred             HHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCC
Q 035507          481 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAE  559 (684)
Q Consensus       481 al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~  559 (684)
                      ++.+++-++-..++....+++.|+-...++-|.- +....+++.|||.+.|++..+.++...++.. .++.|+......+
T Consensus       350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h  428 (461)
T KOG4199|consen  350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANH  428 (461)
T ss_pred             HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcC
Confidence            9999999999999999999999999999998854 3356899999999999999888888877776 5777888777778


Q ss_pred             HhHHHHHHHHHHHhhc
Q 035507          560 FDIKEEAAWAISNASS  575 (684)
Q Consensus       560 ~~v~~~a~~aL~nl~~  575 (684)
                      +.....|-.||..+-.
T Consensus       429 ~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  429 ETCEAAAKAALRDLGC  444 (461)
T ss_pred             ccHHHHHHHHHHhcCc
Confidence            8888888888887744

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.62  E-value=5.2e-14  Score=139.63  Aligned_cols=351  Identities=16%  Similarity=0.114  Sum_probs=250.2

Q ss_pred             HHHHHHHHHHHHHHhcCCC---CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHH
Q 035507          263 NNLQLEATTQFQKLLSIES---MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIF  339 (684)
Q Consensus       263 ~~~~~~a~~~L~~l~s~~~---~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~L  339 (684)
                      ..+...+..++.+....+.   ..+..-++++.+..|.+..++++ .++..+..++|+|+|.++.+.|..+.+.|+-..+
T Consensus        56 ~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqiv  134 (604)
T KOG4500|consen   56 DTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQIV  134 (604)
T ss_pred             chhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCceeh
Confidence            3444445555555442221   12233467888999999998886 7999999999999999999999999999998888


Q ss_pred             HHhcCC----C---ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc-cCCchHHHHHHHHHHHHhccCC--C
Q 035507          340 VKLLAS----P---SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN-EHTELSMLRIATTTLSNLCRGK--P  409 (684)
Q Consensus       340 i~lL~~----~---~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~-~~~~~~v~~~a~~~L~nL~~~~--~  409 (684)
                      ++.|+.    .   +.+...-+...|.|...++...|..+.+.|+++.|...+- ...+....+.......|+.+..  .
T Consensus       135 id~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~  214 (604)
T KOG4500|consen  135 IDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEM  214 (604)
T ss_pred             HhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHh
Confidence            887765    2   2356667788899999999999999999999998877763 2233333333322222222211  0


Q ss_pred             CCChhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCc-------ccHhH
Q 035507          410 RPLFDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSP-------SVLTP  480 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~-------~v~~~  480 (684)
                      -.++.....+.-.+++++.+ -.+++.+-+...+.+.+ + ++...-.+.+.|.+..++.+++. +..       .....
T Consensus       215 ~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~a-e-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~  292 (604)
T KOG4500|consen  215 LYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAA-E-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR  292 (604)
T ss_pred             hhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHh-c-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence            11122223344445555543 35667777788888888 4 44444557788999999888865 211       12233


Q ss_pred             HHHHHHHHHcCChhhHHHHHhcC-ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc--
Q 035507          481 ALWTVGNIVMGDDFQTQCIINHG-AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN--  557 (684)
Q Consensus       481 al~~L~nl~~~~~~~~~~~i~~g-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~--  557 (684)
                      ++....-+..|++ ..+.+...+ +++.+..++.+. +......+.-+++|+++.+ +...++++.+++..|+.++..  
T Consensus       293 ~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~  369 (604)
T KOG4500|consen  293 IAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEK  369 (604)
T ss_pred             hhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Confidence            4444444556665 455566555 899999999999 9999999999999999876 556668889999999999865  


Q ss_pred             ---CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          558 ---AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       558 ---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                         ++.+++..++.||.|++..  ......+...|+.+.+.-.++...|++...-+..++.+....+
T Consensus       370 ~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  370 DVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             CCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence               4778889999999999873  3455667899999999999999999999999999987766544

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=3.4e-12  Score=128.43  Aligned_cols=376  Identities=19%  Similarity=0.140  Sum_probs=281.1

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507          262 DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK  341 (684)
Q Consensus       262 ~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~  341 (684)
                      ...+...|+..|.+++..- ..-..+...+++..||+.|..++ .++.......|..++- -.+++..+.+.|++..|+.
T Consensus       276 QeqLLrva~ylLlNlAed~-~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~k  352 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAEDI-SVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLK  352 (791)
T ss_pred             HHHHHHHHHHHHHHHhhhh-hHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHH
Confidence            3455556778888877543 34456788899999999999888 7888888899999887 6678888999999999999


Q ss_pred             hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHH
Q 035507          342 LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP  421 (684)
Q Consensus       342 lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~  421 (684)
                      ++...+++++...+..+.|++-++. .|..+...|.+|.+..++.+....   ..|+..+..++..+..........+++
T Consensus       353 lfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdci~  428 (791)
T KOG1222|consen  353 LFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDCIK  428 (791)
T ss_pred             hcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHHHH
Confidence            9999999999999999999998875 477788899999999999554443   335666777777765555666688999


Q ss_pred             HHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHHHHHHHHcCChhhHHHH
Q 035507          422 ALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCI  499 (684)
Q Consensus       422 ~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~  499 (684)
                      .+.+.+-. .+.++-.+.+..-.|++  .+..+.+.+.+...+..|++.- +..++    -.+..+.|++.+.......+
T Consensus       429 ~lmk~v~~~~~~~vdl~lia~ciNl~--lnkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~F  502 (791)
T KOG1222|consen  429 LLMKDVLSGTGSEVDLALIALCINLC--LNKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMF  502 (791)
T ss_pred             HHHHHHHhcCCceecHHHHHHHHHHH--hccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHH
Confidence            98876654 44555444444445777  4556667677766777776653 33332    23456778887665444445


Q ss_pred             HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCC
Q 035507          500 INHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRG  577 (684)
Q Consensus       500 i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~  577 (684)
                      ++  .+.-|..++....+...-.++..+++|++..+-+..+.+-+.+++|.+-..|..+  ..+++-....+++.++.  
T Consensus       503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--  578 (791)
T KOG1222|consen  503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--  578 (791)
T ss_pred             HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence            54  5666667776654677888999999999886666666667788999999999876  67788888888998887  


Q ss_pred             CHHHHHHHHHCCChHHHHhhccC--CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC
Q 035507          578 THDQIKYLVTEGCIKPLCDLLQC--ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH  655 (684)
Q Consensus       578 ~~~~~~~l~~~g~l~~L~~lL~~--~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~  655 (684)
                      +...+..+...|+++.++++|+.  .|.+++...+..+..++......             .-++.+...-..+.+|.++
T Consensus       579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLMHD  645 (791)
T KOG1222|consen  579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLMHD  645 (791)
T ss_pred             hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHHhc
Confidence            55666677789999999999985  46778888888888888774332             3456666666778899999


Q ss_pred             CCHHHHHHHHHH
Q 035507          656 DNNEIHEKSVKI  667 (684)
Q Consensus       656 ~~~~i~~~a~~i  667 (684)
                      .|.+|++.+...
T Consensus       646 kN~eiRkVCDn~  657 (791)
T KOG1222|consen  646 KNAEIRKVCDNA  657 (791)
T ss_pred             ccHHHHHHHHHH
Confidence            999887654433

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=3.4e-12  Score=123.24  Aligned_cols=318  Identities=17%  Similarity=0.225  Sum_probs=248.8

Q ss_pred             HcCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhC
Q 035507          289 ESGVVPRFVEFL---MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAA  363 (684)
Q Consensus       289 ~~g~i~~Lv~lL---~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~  363 (684)
                      ..|..+.++.++   .+++ ..+-..++.+|..+..+.|+    +.+..++..++.+|..  ++.++....+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            345566555444   3344 67888888898888876665    4456778899998865  667787778888888787


Q ss_pred             CCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC-CCh---------hhhhchHHHHHHHhcC-CcH
Q 035507          364 DSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR-PLF---------DQVRPALPALAQLIHS-NDE  432 (684)
Q Consensus       364 ~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~-~~~---------~~~~~~l~~L~~lL~~-~d~  432 (684)
                      ..+..|+.+.+.++++.+...++......+.+.++|++.-|...+.. ..+         ..-.+++..|+..+.. -||
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            77778999999999999998887776668999999999999877622 111         1225567778887764 479


Q ss_pred             HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC-cc---cHhHHHHHHHHHHcCChhhHHHHHhcCChHHH
Q 035507          433 QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS-PS---VLTPALWTVGNIVMGDDFQTQCIINHGAVPCL  508 (684)
Q Consensus       433 ~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~---v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L  508 (684)
                      .+...++.+|..++  ..++..+.+.+.|++..++.++.+.+ ..   ....++..|..++ |+++....+++.|+.+.+
T Consensus       257 ~~L~~l~~tl~~lA--Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~i  333 (461)
T KOG4199|consen  257 DSLVSLSTTLKALA--VRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKI  333 (461)
T ss_pred             cHHHHHHHHHHHHH--HHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHH
Confidence            99999999999999  67788999999999999999998843 33   4456777777776 566688899999999999


Q ss_pred             HHHh-ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHH
Q 035507          509 LALL-IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYL  585 (684)
Q Consensus       509 ~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l  585 (684)
                      +.++ .+..++.|..+++.+++-++-..|++-..+++.|+-...++.|+.-  ...+++.|||++.|++.. +.+++..+
T Consensus       334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~  412 (461)
T KOG4199|consen  334 ITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTIL  412 (461)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchH
Confidence            9987 3334889999999999999998899999999999999999988754  667999999999999985 35666666


Q ss_pred             HHCCChHHHHhhccCCChHHHHHHHHHHHHH
Q 035507          586 VTEGCIKPLCDLLQCADPKIVTVCLEGLENI  616 (684)
Q Consensus       586 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~~i  616 (684)
                      +.. +++.|...-....+.....+-.+|+.+
T Consensus       413 l~~-GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  413 LAN-GIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             Hhc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            665 577788777777777777777777654

>PRK09687 putative lyase; Provisional

Probab=99.59  E-value=2.9e-13  Score=135.64  Aligned_cols=253  Identities=15%  Similarity=0.079  Sum_probs=199.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.+...|.+.|..++..|+++|..+-.           ..+++.+..++.+++ +.+|..|+++|+.+......    
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc----
Confidence            45788999999999999999999987532           235677888888887 99999999999998752211    


Q ss_pred             HHhcCChHHHHHh-cCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          330 VIEHDAVPIFVKL-LASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       330 i~~~g~i~~Li~l-L~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                        ...+++.|..+ ++++++.||..|+.+||+++......     ...++..+...+ .+.+..++..++++|+.+..  
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~--  157 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND--  157 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC--
Confidence              12357788876 67789999999999999996443221     111344455555 56688999999999976542  


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                              ...++.|+.++.++++.++..|+.+|+.+. ..++         .+++.|+..+.+.++.++..|++.|+.+
T Consensus       158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNK-YDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                    357899999999999999999999999986 3332         3567899999999999999999999986


Q ss_pred             HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-cCCHhHHHHHH
Q 035507          489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-NAEFDIKEEAA  567 (684)
Q Consensus       489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-~~~~~v~~~a~  567 (684)
                      -.  +         .++|.|++.|.++ +  ++..|+.+|+++...           ..+|.|..++. ..|..++..|.
T Consensus       220 ~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 KD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             CC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHH
Confidence            32  2         3789999999887 5  688899999998542           26899999997 67999999999


Q ss_pred             HHHH
Q 035507          568 WAIS  571 (684)
Q Consensus       568 ~aL~  571 (684)
                      +++.
T Consensus       275 ~a~~  278 (280)
T PRK09687        275 DKLK  278 (280)
T ss_pred             HHHh
Confidence            9875

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.56  E-value=1.9e-12  Score=128.69  Aligned_cols=368  Identities=12%  Similarity=0.044  Sum_probs=271.8

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcC---CC---CHHHHHHHHHHHHHHhc
Q 035507          248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR---ED---YPQLQFQAAWALTNIAS  321 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~---~~---~~~v~~~A~~~L~~l~~  321 (684)
                      .+.++.+.+..+|+|.++..+..++|.++.+.+.+++..+.+.|+-..+++.|+.   .+   +.+.-..+...|.|..-
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            3577888888889999999999999999999988999999999997777777754   12   23556667788999999


Q ss_pred             CCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCCchHHHHHHH
Q 035507          322 GTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHTELSMLRIAT  398 (684)
Q Consensus       322 ~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~  398 (684)
                      ++.+.+..+++.|+++.|...+.-  .+....+......+|+..-- +...+...+......+++++.....+++...+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999987654  66777788887777776321 222334445566777888887777778888888


Q ss_pred             HHHHHhccCCCCCChhhhhchHHHHHHHhcC-Cc-------HHHHHHHHHHHHhhccCCChHHHHHHHHhc-hHHHHHHh
Q 035507          399 TTLSNLCRGKPRPLFDQVRPALPALAQLIHS-ND-------EQVLTDACWALFGLSGDRNNDKIQAVIEAG-VCGRLVEL  469 (684)
Q Consensus       399 ~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d-------~~v~~~al~~L~~L~~~~~~~~~~~~~~~g-~l~~L~~l  469 (684)
                      ..+...+.++...-.....|.+..+..+++. .+       -.....++....-+. .++ +..+.+...+ ++..+...
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll-tGD-eSMq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL-TGD-ESMQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh-cCc-hHHHHHhcCcHHHHHHHHH
Confidence            8888888887544445556777778887764 22       223344444444455 444 4455565555 89999999


Q ss_pred             cCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC----CChhHHHHHHHHHHHHhcCChHHHHHHHHh
Q 035507          470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN----HKNSIKKEVSWIISNIACGNREQIQAVIDA  545 (684)
Q Consensus       470 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  545 (684)
                      +.+.+......+.-+|||+++.++ ..-.+++.+++..|+.++...    .+.+++.+++.+|.|++--- .+...++.+
T Consensus       324 ~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~a  401 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPA  401 (604)
T ss_pred             hcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhcccc
Confidence            999999999999999999998766 566688889999999998542    15678888999999998632 445668889


Q ss_pred             CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCChH-HHHHHHHHHHHHHhcc
Q 035507          546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLV-TEGCIKPLCDLLQCADPK-IVTVCLEGLENILKVG  620 (684)
Q Consensus       546 g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~g~l~~L~~lL~~~~~~-v~~~al~~L~~il~~~  620 (684)
                      |+.+.++..++...+.+...-...+.-+..+ .+.....+. +...++.|++.-+++|.. +..-....+.-+.+..
T Consensus       402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs  477 (604)
T KOG4500|consen  402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHS  477 (604)
T ss_pred             chHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhh
Confidence            9999999999999998888887777766552 222223333 234567777777776654 5555666666666553

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.56  E-value=2.2e-13  Score=151.92  Aligned_cols=328  Identities=19%  Similarity=0.200  Sum_probs=248.1

Q ss_pred             hhhhccHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHH---H-------HhhcCC------CC
Q 035507          245 HTKLEILPMMVAGVWSDD---NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRF---V-------EFLMRE------DY  305 (684)
Q Consensus       245 ~~~~~~l~~lv~~L~s~~---~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~L---v-------~lL~~~------~~  305 (684)
                      ....|.++.+++.+...|   .+.+..|-.+|.+++...++....=.+..+++.|   .       .++...      ..
T Consensus       231 mR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~  310 (2195)
T KOG2122|consen  231 MRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS  310 (2195)
T ss_pred             HHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            345689999999998543   5778888899999987766322221222222222   2       222221      11


Q ss_pred             HHHHH-HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC------------CChHHHHHHHHHHHHhhCCCCCCch-h
Q 035507          306 PQLQF-QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS------------PSDDVREQAVWALGNVAADSSGCRD-L  371 (684)
Q Consensus       306 ~~v~~-~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~------------~~~~v~~~a~~~L~nLa~~~~~~r~-~  371 (684)
                      .+-+. .|+.+|..++. ++++|..+.+.|++..+-.|+.-            ....+|..|..+|.||...+...+. .
T Consensus       311 ~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L  389 (2195)
T KOG2122|consen  311 DEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL  389 (2195)
T ss_pred             cchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence            23444 67777888887 89999999999999998887742            1357899999999999965544433 4


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChh--hhhchHHHHHHH-hcCCcHHHHHHHHHHHHhhccC
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFD--QVRPALPALAQL-IHSNDEQVLTDACWALFGLSGD  448 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~--~~~~~l~~L~~l-L~~~d~~v~~~al~~L~~L~~~  448 (684)
                      ....|++..++..| .....++......+|.||+.........  ...+.+-.|+.. ++...+..+..++.+|+||+ .
T Consensus       390 Cs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS-A  467 (2195)
T KOG2122|consen  390 CSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLS-A  467 (2195)
T ss_pred             hhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh-h
Confidence            45678999999999 4555678888999999999886332222  224555555543 45667788999999999999 6


Q ss_pred             CChHHHHHHHH-hchHHHHHHhcCCC----CcccHhHHHHHHHHHH---cCChhhHHHHHhcCChHHHHHHhccCCChhH
Q 035507          449 RNNDKIQAVIE-AGVCGRLVELLGHP----SPSVLTPALWTVGNIV---MGDDFQTQCIINHGAVPCLLALLIHNHKNSI  520 (684)
Q Consensus       449 ~~~~~~~~~~~-~g~l~~L~~lL~~~----~~~v~~~al~~L~nl~---~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v  520 (684)
                      ...++...+.. .|.+..|+.+|...    .-.+.+.|-.+|.|++   ..+..+++.+.+++.+..|++.|.+. +..+
T Consensus       468 HcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTi  546 (2195)
T KOG2122|consen  468 HCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTI  546 (2195)
T ss_pred             cccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEE
Confidence            55555555544 48999999999764    3467777777777764   45667889999999999999999998 9999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507          521 KKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       521 ~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~  576 (684)
                      ..++|.+|+|+.+.+++.-+++++.|.++.|.+++.+++..+..-++.+|.|++..
T Consensus       547 VSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  547 VSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             eecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999864

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=6.2e-12  Score=140.01  Aligned_cols=395  Identities=18%  Similarity=0.178  Sum_probs=269.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      +.++-+....+|.|+..|..|+..|..+...-... ..-.-..+.+.|.+.+.+++.+ +|..|+++++.++...+..+.
T Consensus       118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~  195 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT-LQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKS  195 (1075)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-cchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchH
Confidence            35777888888999999999999999876543311 1101112456777777787755 999999999999885542222


Q ss_pred             HHHh-cCChHHHHHhcC----CCChHHHHHHHHHHHHhhCCCCCC-chhHhhcCCHHHHHHHhc-cCCchHHHHHHHHHH
Q 035507          329 VVIE-HDAVPIFVKLLA----SPSDDVREQAVWALGNVAADSSGC-RDLVLSEGALIPLLAQLN-EHTELSMLRIATTTL  401 (684)
Q Consensus       329 ~i~~-~g~i~~Li~lL~----~~~~~v~~~a~~~L~nLa~~~~~~-r~~i~~~g~l~~Ll~~L~-~~~~~~v~~~a~~~L  401 (684)
                      .+-. ...+|.++..+.    .++......++.+|..++...|.+ +..+.  .++...+.... +.-+..++..|+.+|
T Consensus       196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            2221 245676666554    467777788999999998777653 22221  12333333332 345788999999999


Q ss_pred             HHhccCCC---CCChhhhhchHHHHHHHhcCCc----------------HHHHHHHHHHHHhhccCCChHHHHHHHHhch
Q 035507          402 SNLCRGKP---RPLFDQVRPALPALAQLIHSND----------------EQVLTDACWALFGLSGDRNNDKIQAVIEAGV  462 (684)
Q Consensus       402 ~nL~~~~~---~~~~~~~~~~l~~L~~lL~~~d----------------~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~  462 (684)
                      ..+++..|   .........+++.++.++...+                ..--..|..++-.++..-..+.    +-.-+
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~----v~p~~  349 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ----VLPPL  349 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh----ehHHH
Confidence            99988842   1222244677777777765311                1123445556655551112121    11224


Q ss_pred             HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507          463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV  542 (684)
Q Consensus       463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  542 (684)
                      ++.+-.++++.++.-|.+|+.+|+.++.|+.+.....++ .+++.++..|.++ ++.||..|+.+++.++..-...++.-
T Consensus       350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence            677778889999999999999999999999987776554 7889999999999 99999999999999998766777777


Q ss_pred             HHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChH-HHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507          543 IDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIK-PLCDLLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       543 ~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~-~L~~lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      ...-++|.|+..+++. +++++..|+.|+.|++.....+....... ++++ .+.-++.++.+.++..++.+|..+....
T Consensus       428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA  506 (1075)
T KOG2171|consen  428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA  506 (1075)
T ss_pred             HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            7777888999999876 78999999999999998776655433222 2455 4444666788999999999999999876


Q ss_pred             cccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHHHH
Q 035507          621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNEIHEKSVKIL  668 (684)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ii  668 (684)
                      +..         ..+|...+     +..|... ++..+.+.+....+.+
T Consensus       507 ~~~---------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~Lrgktm  541 (1075)
T KOG2171|consen  507 QEK---------FIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTM  541 (1075)
T ss_pred             hhh---------hHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHH
Confidence            653         23455554     3445444 4444455555544433

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.55  E-value=7.9e-13  Score=147.52  Aligned_cols=364  Identities=19%  Similarity=0.208  Sum_probs=274.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHhcCCchhHH
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED--YPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~--~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ...+..++...|.+   .-++.|..+. ..+.....+...|.+|.|+++|.-++  +.+.+..|-.+|.||....++...
T Consensus       199 s~sllsml~t~D~e---e~ar~fLemS-ss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr  274 (2195)
T KOG2122|consen  199 SNSLLSMLGTDDEE---EMARTFLEMS-SSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR  274 (2195)
T ss_pred             hhHHhhhcccCCHH---HHHHHHHHhc-cCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence            34555566555543   3455565543 33456677889999999999996543  367889999999999986666554


Q ss_pred             HHHhcCChHHHHH----------hcCC-----CCh--HHH-HHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc---
Q 035507          329 VVIEHDAVPIFVK----------LLAS-----PSD--DVR-EQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE---  387 (684)
Q Consensus       329 ~i~~~g~i~~Li~----------lL~~-----~~~--~v~-~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~---  387 (684)
                      .-.+.-++..|=+          .+..     ...  +-+ -.|+.+|..++.+. ++|..+.+.|+++.+-.++.-   
T Consensus       275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~  353 (2195)
T KOG2122|consen  275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHE  353 (2195)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4333333333221          1111     111  122 25666677776665 468888999999998887631   


Q ss_pred             --------CCchHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHH
Q 035507          388 --------HTELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAV  457 (684)
Q Consensus       388 --------~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~  457 (684)
                              .....+++++..+|.||..++  .........+++..++..|.+..+++..-....|.||+-..+......+
T Consensus       354 mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvL  433 (2195)
T KOG2122|consen  354 MHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVL  433 (2195)
T ss_pred             hcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHH
Confidence                    113578999999999999998  2333344589999999999988888988888999999933334444555


Q ss_pred             HHhchHHHHHHh-cCCCCcccHhHHHHHHHHHHcCChhhHHHHHh-cCChHHHHHHhccCC---ChhHHHHHHHHHHHHh
Q 035507          458 IEAGVCGRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNH---KNSIKKEVSWIISNIA  532 (684)
Q Consensus       458 ~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~  532 (684)
                      .+.|-+..|+.. |...++...+..+.+|+||+.++.++...+-+ .|.+..|+.+|.+..   ...+...|..+|.|+.
T Consensus       434 rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVS  513 (2195)
T KOG2122|consen  434 RETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVS  513 (2195)
T ss_pred             HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHH
Confidence            566888887776 55567788899999999999888777666553 589999999997651   3467788889999886


Q ss_pred             c---CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHH
Q 035507          533 C---GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC  609 (684)
Q Consensus       533 ~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~a  609 (684)
                      .   .+.+++|.+.+.+++..|++.|++.+..+..++|.+|.||... +++..++|++.|.+..|.+++++.+.-+..-+
T Consensus       514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GS  592 (2195)
T KOG2122|consen  514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGS  592 (2195)
T ss_pred             hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhH
Confidence            4   5778889999999999999999999999999999999999874 67778899999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 035507          610 LEGLENILKVG  620 (684)
Q Consensus       610 l~~L~~il~~~  620 (684)
                      ..+|.|++..-
T Consensus       593 aaALrNLln~R  603 (2195)
T KOG2122|consen  593 AAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHHhcCC
Confidence            99999999875

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.54  E-value=3.6e-13  Score=144.75  Aligned_cols=364  Identities=16%  Similarity=0.142  Sum_probs=256.7

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 035507          246 TKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIES--MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGT  323 (684)
Q Consensus       246 ~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~--~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~  323 (684)
                      .+++.++.+|.++.+.+.++|..|+.+|+|+.....  .+.-.+.+.+.|+.++++|....+.+++...+.+|.|+++ +
T Consensus       272 rqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~  350 (717)
T KOG1048|consen  272 RQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-N  350 (717)
T ss_pred             HHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-h
Confidence            457899999999999999999999999999987766  4788889999999999999975557999999999999999 4


Q ss_pred             chhHHHHHhcCChHHHHHhcCC----------C----ChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHHHHHhc--
Q 035507          324 SENTKVVIEHDAVPIFVKLLAS----------P----SDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPLLAQLN--  386 (684)
Q Consensus       324 ~~~~~~i~~~g~i~~Li~lL~~----------~----~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~Ll~~L~--  386 (684)
                      +..+..++ ..++..|..-.-.          +    ...+..++..+|.|++....+.|+.+.+ .|.|..|+..+.  
T Consensus       351 D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~  429 (717)
T KOG1048|consen  351 DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA  429 (717)
T ss_pred             hHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence            44555444 3456666664322          1    2568889999999999877776777665 567888888774  


Q ss_pred             ---cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC----------C---
Q 035507          387 ---EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR----------N---  450 (684)
Q Consensus       387 ---~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~----------~---  450 (684)
                         ...|....++++..+.|++..-...........+...-.....+.+.   ....++..-. ..          +   
T Consensus       430 i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~-~k~~~~~~~~~~pe~~  505 (717)
T KOG1048|consen  430 IQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA---ESVGCFGFKK-RKSDDNCDDLPIPERA  505 (717)
T ss_pred             HHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc---cccccccchh-hhchhcccccCCcccc
Confidence               23466778899999999986541110000000000000000011111   2222332222 11          0   


Q ss_pred             --hHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHHHHHHHHcCChh----hHHHH-HhcCChHHHHHHhccCCChhHHH
Q 035507          451 --NDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALWTVGNIVMGDDF----QTQCI-INHGAVPCLLALLIHNHKNSIKK  522 (684)
Q Consensus       451 --~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~----~~~~~-i~~g~l~~L~~lL~~~~~~~v~~  522 (684)
                        +.-.+.+....++..-..+| .+.++.+.+.++.+|-|++.+...    ....+ ....++|.++++|+.+ +..+.+
T Consensus       506 ~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~  584 (717)
T KOG1048|consen  506 TAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVR  584 (717)
T ss_pred             cCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHH
Confidence              00111123333444433333 345778899999999999987642    33334 5678999999999999 999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC------CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh
Q 035507          523 EVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA------EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCD  596 (684)
Q Consensus       523 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~  596 (684)
                      .++.+|.|++.+.  ..+.++..++++.|++.|...      +.++...++.+|.|++. .+.+..+.+.+.+.++.|+.
T Consensus       585 s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~-~~~~nAkdl~~~~g~~kL~~  661 (717)
T KOG1048|consen  585 SAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR-KNVLNAKDLLEIKGIPKLRL  661 (717)
T ss_pred             HHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH-HhHHHHHHHHhccChHHHHH
Confidence            9999999998863  345566688999999999754      47888999999999996 36888999999999999999


Q ss_pred             hccCC-ChHHHHHHHHHHHHHHhc
Q 035507          597 LLQCA-DPKIVTVCLEGLENILKV  619 (684)
Q Consensus       597 lL~~~-~~~v~~~al~~L~~il~~  619 (684)
                      +..+. +++....+-..+..+=.+
T Consensus       662 I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  662 ISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             HhcccCCHHHHHHHHHHHHHHHHH
Confidence            88764 567777776666655443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.53  E-value=4.4e-12  Score=148.42  Aligned_cols=276  Identities=18%  Similarity=0.190  Sum_probs=220.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ..++.|++.|.++++.+|..|+..|..+..           .+.++.|++.|++++ +.+|..|+.+|..+....     
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~-----  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL-----  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-----
Confidence            356899999999999999999999988531           346789999998887 899999999999886421     


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                           ...+.|...|.++++.+|..|+.+|+.+...            ....++..| .+++..++..|+.+|..+-.  
T Consensus       684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L-~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAAL-GDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHh-cCCCHHHHHHHHHHHhcccC--
Confidence                 1236778888999999999999999987421            133566666 78899999999999987521  


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                                 .+.+..++.++++.|+..++.+|+.+. ...         ...++.|..+++++++.+|..|+.+|+.+
T Consensus       744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~-~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 -----------VESVAGAATDENREVRIAVAKGLATLG-AGG---------APAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             -----------cHHHHHHhcCCCHHHHHHHHHHHHHhc-ccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                       244677899999999999999999988 321         12368889999999999999999999998


Q ss_pred             HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507          489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW  568 (684)
Q Consensus       489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~  568 (684)
                      .....          +.+.+...|.++ ++.||..|+++|+.+...           ..++.|+.++.+++..||..|++
T Consensus       803 g~~~~----------~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCPPD----------DVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCcch----------hHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence            54221          235678888888 999999999999987432           25689999999999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHH
Q 035507          569 AISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN  615 (684)
Q Consensus       569 aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~  615 (684)
                      +|+.+.  +++.         ..+.|...+++.++.|+..+..+|..
T Consensus       861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999972  2333         35677788999999999999998863

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.53  E-value=1.7e-12  Score=126.98  Aligned_cols=238  Identities=20%  Similarity=0.216  Sum_probs=189.2

Q ss_pred             hchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507          417 RPALPALAQLIH-SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ  495 (684)
Q Consensus       417 ~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  495 (684)
                      .+-++.++.+|. +.|+.+++.++.++++.+  ..+.....+.+.|+++.+..++.++++.++..|+.++.|++...+.+
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a--af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSA--AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhc--cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            566788999998 568999999999999988  66788888999999999999999999999999999999998766543


Q ss_pred             HHHHHhcCChHHHHHHh-ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507          496 TQCIINHGAVPCLLALL-IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS  574 (684)
Q Consensus       496 ~~~~i~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~  574 (684)
                      .+  ++. .++.+.+.. .++.+..++..+..+|.|++..+ +. +.++ .+.+|.++.++..++..+|..++++|.|++
T Consensus        89 ~~--Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   89 EQ--IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             HH--HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            32  232 455555544 33337789999999999997643 22 2333 347999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhcccccccC-CCCCcchhHHHHHHHHhc-hHHHHHH
Q 035507          575 SRGTHDQIKYLVTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKVGEAEKNT-DSDIGDINQFAQLVEEAE-GLEKIEN  651 (684)
Q Consensus       575 ~~~~~~~~~~l~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~~~~~~~~-~~~~~~~~~~~~~i~~~g-~~~~L~~  651 (684)
                      .  ++...+.++..+++..++.+++.. +.++...++..+.+|-..-.+.... ..+....+.....+.+.+ ..++|..
T Consensus       163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~  240 (254)
T PF04826_consen  163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA  240 (254)
T ss_pred             c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence            8  788999999999999999999875 6788999999999996654443111 001133455667787777 6788999


Q ss_pred             hhcCCCHHHHHHH
Q 035507          652 LQSHDNNEIHEKS  664 (684)
Q Consensus       652 L~~~~~~~i~~~a  664 (684)
                      |..|++++|++++
T Consensus       241 l~~h~d~ev~~~v  253 (254)
T PF04826_consen  241 LANHPDPEVKEQV  253 (254)
T ss_pred             HHcCCCHHHhhhc
Confidence            9999999999875

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.51  E-value=2.8e-11  Score=127.09  Aligned_cols=405  Identities=15%  Similarity=0.091  Sum_probs=275.8

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507          254 MVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVVIE  332 (684)
Q Consensus       254 lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~i~~  332 (684)
                      ++..+...+++....|.....+++.+.+++...+++.|.++.++.+++..+ .++.+.+.+-++...+.+.......+.+
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~   93 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR   93 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence            444556678888899999999999888888788999999999999997754 2577777777888888888889999999


Q ss_pred             cCChHHHHHhcCCCC-hHHHHHHHHHHHHhhCCCCCCchhHh--hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          333 HDAVPIFVKLLASPS-DDVREQAVWALGNVAADSSGCRDLVL--SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       333 ~g~i~~Li~lL~~~~-~~v~~~a~~~L~nLa~~~~~~r~~i~--~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      .+.++.|+++|.+++ ..+++.++.++.++...++..-....  ....+..+..++ ........+.-+...+++|....
T Consensus        94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~  172 (678)
T KOG1293|consen   94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKD  172 (678)
T ss_pred             HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccch
Confidence            999999999999988 88999999999999876654211111  112233333333 32334444455555566665543


Q ss_pred             CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHH---hhccCCChHHHH----HHHHhchHH--HHHHhcCCCCcccHhH
Q 035507          410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALF---GLSGDRNNDKIQ----AVIEAGVCG--RLVELLGHPSPSVLTP  480 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~---~L~~~~~~~~~~----~~~~~g~l~--~L~~lL~~~~~~v~~~  480 (684)
                      ........++...+.-++.......+..|+.+++   .+. .+++....    ...+.|+.+  .+.+++++++...+..
T Consensus       173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL-~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRIL-RNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceee-ecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            3334444777777777777778889999999999   666 44443332    334446666  4556667777666677


Q ss_pred             HHHHHHHHHcCC--------h-----hhHHHH--------------------------------------HhcCChHHHH
Q 035507          481 ALWTVGNIVMGD--------D-----FQTQCI--------------------------------------INHGAVPCLL  509 (684)
Q Consensus       481 al~~L~nl~~~~--------~-----~~~~~~--------------------------------------i~~g~l~~L~  509 (684)
                      ++.++.++...+        .     -....+                                      .+...++...
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence            777766665443        0     000000                                      0000111111


Q ss_pred             HHh----------------------------------------------------ccCCChhHHHHHHHHHHHHhcCChH
Q 035507          510 ALL----------------------------------------------------IHNHKNSIKKEVSWIISNIACGNRE  537 (684)
Q Consensus       510 ~lL----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~~~  537 (684)
                      +++                                                    ... +...+.+|+-++.+++..-..
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~a  410 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSA  410 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHH
Confidence            111                                                    112 344555555555555442111


Q ss_pred             HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507          538 QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL  617 (684)
Q Consensus       538 ~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il  617 (684)
                      -...+-...+..+|++++..++..++..+..|++|++...+ .....++..|+++.+.+++...++.++..++|+|++++
T Consensus       411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~  489 (678)
T KOG1293|consen  411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM  489 (678)
T ss_pred             HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            11112345688999999999999999999999999998543 34567889999999999999999999999999999998


Q ss_pred             hcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507          618 KVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCG  674 (684)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~  674 (684)
                      -.++...+            ..+-.--+...|..+.++++..|++.+.+++.++-.+
T Consensus       490 f~~de~~k------------~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  490 FNCDEEEK------------FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hcchHHHH------------HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            76554321            1111122356678888999999999999999988655

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=3.8e-11  Score=133.87  Aligned_cols=396  Identities=16%  Similarity=0.165  Sum_probs=270.9

Q ss_pred             cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          250 ILPMMVAGVW-SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       250 ~l~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      .++.|...++ +.|++++.-|+..+|+++.+..+.+..-....+-..++..+.++..+.+|..-+.++..++...-..  
T Consensus        37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e--  114 (1075)
T KOG2171|consen   37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE--  114 (1075)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc--
Confidence            5677787776 6789999999999999998865555544555666777777777666899999999999999833221  


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC-chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC-RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~-r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                        --.+.++.|.+..+++++..|+.|+.+|+++...-... +..+.  ...+.+.+.+ .+++..++..++.++..++..
T Consensus       115 --~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~~  189 (1075)
T KOG2171|consen  115 --KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTM-TDPSSPVRVAAVRALGAFAEY  189 (1075)
T ss_pred             --chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhc-cCCcchHHHHHHHHHHHHHHH
Confidence              11355777777788899999999999999998554331 11111  1122333344 444444999999999888776


Q ss_pred             CC--CCChhhhhchHHHHHH----HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--CcccHh
Q 035507          408 KP--RPLFDQVRPALPALAQ----LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--SPSVLT  479 (684)
Q Consensus       408 ~~--~~~~~~~~~~l~~L~~----lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~  479 (684)
                      .+  ..........+|.++.    .+..+|.+....++.++..+. ...+......+. .++.....+..+.  +..+|.
T Consensus       190 ~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~-e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~  267 (1075)
T KOG2171|consen  190 LENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL-ESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRH  267 (1075)
T ss_pred             hccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH-hhchHHHHHHHH-HHHHHHHHHhhcccccHHHHH
Confidence            53  2223333555565444    445677777788888888887 555444333332 2334444444332  345555


Q ss_pred             HHHHHHHHHHcCChh---------------------------------------------hHHHHHh------------c
Q 035507          480 PALWTVGNIVMGDDF---------------------------------------------QTQCIIN------------H  502 (684)
Q Consensus       480 ~al~~L~nl~~~~~~---------------------------------------------~~~~~i~------------~  502 (684)
                      .|+.+|..++...+.                                             .....++            .
T Consensus       268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p  347 (1075)
T KOG2171|consen  268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP  347 (1075)
T ss_pred             HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence            555555554433100                                             0011111            0


Q ss_pred             CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH
Q 035507          503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI  582 (684)
Q Consensus       503 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~  582 (684)
                      -+++.+-.++.++ +..-|++|..+|+-++.|..+.+...++. +++..+..+.++++.||..|+.|++.++..-.++..
T Consensus       348 ~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq  425 (1075)
T KOG2171|consen  348 PLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ  425 (1075)
T ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence            1345666677888 99999999999999999998888776654 899999999999999999999999999987666654


Q ss_pred             HHHHHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHH
Q 035507          583 KYLVTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIH  661 (684)
Q Consensus       583 ~~l~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~  661 (684)
                      ++ ...-+++.|...+++. ++++...+..++-+++....+.        ...+|...+-+.    ++..|..++.+.++
T Consensus       426 k~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~--------~l~pYLd~lm~~----~l~~L~~~~~~~v~  492 (1075)
T KOG2171|consen  426 KK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS--------ILEPYLDGLMEK----KLLLLLQSSKPYVQ  492 (1075)
T ss_pred             HH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHHHH----HHHHHhcCCchhHH
Confidence            44 4455777888888764 6789999999999999877654        345566666433    67778888888888


Q ss_pred             HHHHHHHH
Q 035507          662 EKSVKILE  669 (684)
Q Consensus       662 ~~a~~ii~  669 (684)
                      +.+...|.
T Consensus       493 e~vvtaIa  500 (1075)
T KOG2171|consen  493 EQAVTAIA  500 (1075)
T ss_pred             HHHHHHHH
Confidence            87766653

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=2.7e-12  Score=133.82  Aligned_cols=348  Identities=18%  Similarity=0.191  Sum_probs=224.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHH-HHH---cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEE-VIE---SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS  324 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~-ii~---~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~  324 (684)
                      +.+|.++++|.+.+...+.-|..+|.++...+....+. +.+   .-.+|+++++.++++ |.+|..|+.++..+.-..+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecCc
Confidence            47899999999999999999999999987654311110 000   126899999999998 9999999999988776333


Q ss_pred             hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507          325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPLLAQLNEHTELSMLRIATTTLSN  403 (684)
Q Consensus       325 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n  403 (684)
                      ..-..-++ ..++.+..+-.+++++||.+.+.++..+....+.  ..+.. .++++.++..- ++.|+++.-.||.....
T Consensus       207 qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  207 QALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLA  282 (885)
T ss_pred             HHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence            22221111 3466666677779999999999999999866543  11111 23444444444 67788899999999999


Q ss_pred             hccCCCC--CChhhhhchHHHHHHHhcCCc--------------------------------------------------
Q 035507          404 LCRGKPR--PLFDQVRPALPALAQLIHSND--------------------------------------------------  431 (684)
Q Consensus       404 L~~~~~~--~~~~~~~~~l~~L~~lL~~~d--------------------------------------------------  431 (684)
                      ++..+-.  .-......++|.|+.-+..++                                                  
T Consensus       283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            9988611  112234667777665432111                                                  


Q ss_pred             ------HHHHHHHHHHHHhhccCCChHHHHHHHHhc----hHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh
Q 035507          432 ------EQVLTDACWALFGLSGDRNNDKIQAVIEAG----VCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN  501 (684)
Q Consensus       432 ------~~v~~~al~~L~~L~~~~~~~~~~~~~~~g----~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~  501 (684)
                            ..++.....+|.-++         .+....    ++|.|-+.|.++...+++.++.++|.++.|.-..   ++.
T Consensus       363 dD~~~dWNLRkCSAAaLDVLa---------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p  430 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLA---------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVP  430 (885)
T ss_pred             ccccccccHhhccHHHHHHHH---------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---ccc
Confidence                  112222222222222         122222    4566666677889999999999999999876422   222


Q ss_pred             c--CChHHHHHHhccCCChhHHHHHHHHHHHHhcC--ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507          502 H--GAVPCLLALLIHNHKNSIKKEVSWIISNIACG--NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG  577 (684)
Q Consensus       502 ~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~  577 (684)
                      +  .++|.++.+|.+. .+-||+-+||+|+..+..  ..+ .+..+.. ++..|++.+-+++.+|++.||.|+..+-..+
T Consensus       431 ~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  431 HLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             chHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence            1  3688999999998 999999999999988751  111 2222221 4556666667789999999999999998876


Q ss_pred             CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507          578 THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       578 ~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~  618 (684)
                      ..+...++..  ++..|.-.+..-..+-.....+++..+.+
T Consensus       508 ~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAd  546 (885)
T KOG2023|consen  508 GEELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLAD  546 (885)
T ss_pred             cchhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHH
Confidence            6666665433  44444444432222222333344444443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.45  E-value=2.8e-11  Score=141.73  Aligned_cols=278  Identities=15%  Similarity=0.192  Sum_probs=220.2

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC
Q 035507          289 ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC  368 (684)
Q Consensus       289 ~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~  368 (684)
                      +.+.++.|++.|.+++ +.+|..|+.+|..+..           .++++.|+..|.++++.||..|+.+|+.+....+. 
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-  685 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-  685 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-
Confidence            3456789999999888 9999999999998764           35689999999999999999999999998543221 


Q ss_pred             chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccC
Q 035507          369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGD  448 (684)
Q Consensus       369 r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~  448 (684)
                               .+.+...| +++++.++..++.+|..+....           ...+...+.++|+.++..|+.+|+.+. .
T Consensus       686 ---------~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~-~  743 (897)
T PRK13800        686 ---------APALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVD-D  743 (897)
T ss_pred             ---------hHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhccc-C
Confidence                     24566667 5688999999999998875321           245678899999999999999999865 2


Q ss_pred             CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507          449 RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII  528 (684)
Q Consensus       449 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L  528 (684)
                                    .+.|..++.++++.+|..++.+|+.+.....         ..++.|..++.++ ++.+|..|+.+|
T Consensus       744 --------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aL  799 (897)
T PRK13800        744 --------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAAL  799 (897)
T ss_pred             --------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                          1346778999999999999999999865332         2467888999998 999999999999


Q ss_pred             HHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHH
Q 035507          529 SNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTV  608 (684)
Q Consensus       529 ~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~  608 (684)
                      +++....          .+.+.+...+.+.++.+|..|+++|..+-.   +         ..++.|..+|+++++.|+..
T Consensus       800 g~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---~---------~a~~~L~~~L~D~~~~VR~~  857 (897)
T PRK13800        800 AELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAA---D---------VAVPALVEALTDPHLDVRKA  857 (897)
T ss_pred             HhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc---c---------chHHHHHHHhcCCCHHHHHH
Confidence            9985431          123567888999999999999999987642   1         24689999999999999999


Q ss_pred             HHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 035507          609 CLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILET  670 (684)
Q Consensus       609 al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~  670 (684)
                      +..+|..+ . +..                     ...+.|....++.+++|+..|...|+.
T Consensus       858 A~~aL~~~-~-~~~---------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        858 AVLALTRW-P-GDP---------------------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHhcc-C-CCH---------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99999885 1 110                     124567777889999999999988763

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1e-10  Score=117.89  Aligned_cols=359  Identities=17%  Similarity=0.187  Sum_probs=269.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ..+..+|+.|..++.++......-|.+ +|--.++...+.+.|++..|++++...+ ++++...+..+.|++. +...+.
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkK-LSIf~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~  380 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKK-LSIFDENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRP  380 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHH-hhhhccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccH
Confidence            367889999998887777766666666 4544578889999999999999999888 9999999999999998 778899


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .+++.|.+|.+..++.+...  ...|+..|..++.+.. .+.++.....++.++..+..+.+..+-...+...-|+|-+.
T Consensus       381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            99999999999999988543  2347778888887664 47778888889999988877777777777777777899887


Q ss_pred             CCCChhhhhchHHHHHHHh-cCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLI-HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVG  486 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~  486 (684)
                      .+.+......++..+++.- ...|+ ....   .+.+++ +........+++  .+..|...++. .++.....++.+++
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~-lLmK---~vRniS-qHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDL-LLMK---VVRNIS-QHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccch-HHHH---HHHHhh-hccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            6666666677777777654 34443 3333   455666 444333344444  35556666654 45667788899999


Q ss_pred             HHHcCChhhHHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHH
Q 035507          487 NIVMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIK  563 (684)
Q Consensus       487 nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~  563 (684)
                      |+.-.+-+-.+.+.....+|.+-..|..+. ..++.-...-+++.++.. ......+..+++++.|+++|+..  +.+..
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV  609 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV  609 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence            998766556666677899999999997652 345666666666766654 24555566789999999999865  78888


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          564 EEAAWAISNASSRGTHDQIKYLV-TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       564 ~~a~~aL~nl~~~~~~~~~~~l~-~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      ....+++..+..+  ...+++++ +...-..+++++++.+.+++.++-.+|..+.....+.
T Consensus       610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EW  668 (791)
T KOG1222|consen  610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEW  668 (791)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHH
Confidence            8888888888873  45566665 4556678999999999999999999998888776543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.45  E-value=5.9e-12  Score=123.26  Aligned_cols=196  Identities=21%  Similarity=0.248  Sum_probs=164.6

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507          288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      ++++-++.|+.+|+..++|.++..|+.++++.+. .+..+..+.+.|+++.+..+|.++++.+++.|+++|.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            5667789999999987669999999999999887 889999999999999999999999999999999999999988765


Q ss_pred             CchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          368 CRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       368 ~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                       +..+-.  .+..+....... .+..++..++.+|.||+.....  .......+|.++.++.+++..++..++++|.+|+
T Consensus        88 -~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 -QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             -HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence             344432  356666654333 4778899999999999866422  2334668999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHHHHHHHHcC
Q 035507          447 GDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALWTVGNIVMG  491 (684)
Q Consensus       447 ~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~  491 (684)
                        .++.....++.+++++.++.++... ...+...++..+.|+..+
T Consensus       163 --~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 --ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             --cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence              6777788899999999999999875 577888999999999654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.41  E-value=9e-11  Score=123.31  Aligned_cols=373  Identities=14%  Similarity=0.111  Sum_probs=249.5

Q ss_pred             hhhccHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 035507          246 TKLEILPMMVAGVWSDD--NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGT  323 (684)
Q Consensus       246 ~~~~~l~~lv~~L~s~~--~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~  323 (684)
                      .+.|.++.+..+++..|  .+.+...+..+...+.++......+.+.+.++.+.++|++++...++...+.++.++.+.+
T Consensus        48 ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~  127 (678)
T KOG1293|consen   48 IKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETS  127 (678)
T ss_pred             hhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcc
Confidence            45689999999998766  4555566677777778888889999999999999999988774578899999999999855


Q ss_pred             chhHHHHHhc--CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHH
Q 035507          324 SENTKVVIEH--DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTL  401 (684)
Q Consensus       324 ~~~~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L  401 (684)
                      +..-.....+  .+++.+..++..+...+...-+....++++.. ..+....+.|+.+.+--++ .......+..|..++
T Consensus       128 ~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~  205 (678)
T KOG1293|consen  128 KYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLCL  205 (678)
T ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHHh
Confidence            4443333322  34555555554244444444444445555444 3344555666655544443 555677788888888


Q ss_pred             H---HhccCCCCCChhhh-----hchHH--HHHHHhcCCcHHHHHHHHHHHHhhccCCChH-------------------
Q 035507          402 S---NLCRGKPRPLFDQV-----RPALP--ALAQLIHSNDEQVLTDACWALFGLSGDRNND-------------------  452 (684)
Q Consensus       402 ~---nL~~~~~~~~~~~~-----~~~l~--~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~-------------------  452 (684)
                      +   ++..+++.......     .++.+  .+.+++.+++...+..++.++.++. ..+..                   
T Consensus       206 sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~-~~s~~~d~l~~~~~~~dmgd~~i~  284 (678)
T KOG1293|consen  206 SRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYL-RKSFNYDPLPWWFIFFDMGDSLIV  284 (678)
T ss_pred             hccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHH-hccccccccccceeeccCchHHHH
Confidence            8   66666543332221     44444  3445555666555566666655544 22200                   


Q ss_pred             --------------------------------HHHHHHHhchHHHHHHhc------------------------------
Q 035507          453 --------------------------------KIQAVIEAGVCGRLVELL------------------------------  470 (684)
Q Consensus       453 --------------------------------~~~~~~~~g~l~~L~~lL------------------------------  470 (684)
                                                      ......+....+.+.+++                              
T Consensus       285 q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~  364 (678)
T KOG1293|consen  285 QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYG  364 (678)
T ss_pred             HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhh
Confidence                                            000011111111122211                              


Q ss_pred             ----------------------CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507          471 ----------------------GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII  528 (684)
Q Consensus       471 ----------------------~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L  528 (684)
                                            -..+...+.+||.++-+++..-+.....+-+..+...+++++..+ +..++..+..++
T Consensus       365 ~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai  443 (678)
T KOG1293|consen  365 LEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAI  443 (678)
T ss_pred             cchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHH
Confidence                                  112345566666666666553332222233456789999999888 999999999999


Q ss_pred             HHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHH
Q 035507          529 SNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTV  608 (684)
Q Consensus       529 ~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~  608 (684)
                      .|+.-........++..|++..+..++.+.++.++..+.|+|.++.-+.+......+...-.-..+..+.+++++.|++.
T Consensus       444 ~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq  523 (678)
T KOG1293|consen  444 CNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ  523 (678)
T ss_pred             HHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence            99998766778889999999999999999999999999999999998776665555555555667788889999999999


Q ss_pred             HHHHHHHHHhcccc
Q 035507          609 CLEGLENILKVGEA  622 (684)
Q Consensus       609 al~~L~~il~~~~~  622 (684)
                      ++..++|+.....+
T Consensus       524 ~fqllRNl~c~~~~  537 (678)
T KOG1293|consen  524 CFQLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHHHhhcCcHH
Confidence            99999999876443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=7e-11  Score=123.51  Aligned_cols=317  Identities=16%  Similarity=0.154  Sum_probs=222.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc----CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEH----DAVPIFVKLLASPSDDVREQAVWALGNVAADSS  366 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~----g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~  366 (684)
                      .++|.|.++|.+++ ...++-|..+|..|+.++++.-+.-+..    -.+|.++++.+++++.+|..|+.++..+.-..+
T Consensus       128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            47899999999988 5889999999999999766554432211    258999999999999999999999998875543


Q ss_pred             CCchhHhh-cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 035507          367 GCRDLVLS-EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGL  445 (684)
Q Consensus       367 ~~r~~i~~-~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L  445 (684)
                      .  ..... ...+..+..+ .++.+++++++.|.++..|....+.+......+++..+++..++.|++|...||.....+
T Consensus       207 q--al~~~iD~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~  283 (885)
T KOG2023|consen  207 Q--ALYVHIDKFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL  283 (885)
T ss_pred             H--HHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence            2  11111 1223344433 378899999999999999999888888888899999999999999999999999999888


Q ss_pred             ccCCChHHHHHHHHh--chHHHHHHhcCCCC-------------------------------------------------
Q 035507          446 SGDRNNDKIQAVIEA--GVCGRLVELLGHPS-------------------------------------------------  474 (684)
Q Consensus       446 ~~~~~~~~~~~~~~~--g~l~~L~~lL~~~~-------------------------------------------------  474 (684)
                      + ..+ -....+...  .++|.|+.-+...+                                                 
T Consensus       284 a-eqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D  361 (885)
T KOG2023|consen  284 A-EQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD  361 (885)
T ss_pred             h-cCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence            8 443 222222221  45565554432110                                                 


Q ss_pred             -------cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 035507          475 -------PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL  547 (684)
Q Consensus       475 -------~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~  547 (684)
                             ..+|+.++.+|.-++.--.+   .++. -++|.|-+.|.+. +..+|+.+..+++.||.|.-...-.-. ..+
T Consensus       362 DdD~~~dWNLRkCSAAaLDVLanvf~~---elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peL  435 (885)
T KOG2023|consen  362 DDDAFSDWNLRKCSAAALDVLANVFGD---ELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PEL  435 (885)
T ss_pred             cccccccccHhhccHHHHHHHHHhhHH---HHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHH
Confidence                   23455444444444432221   1111 2456666667777 899999999999999987533322111 137


Q ss_pred             HHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH-HHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI-KYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       548 l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~-~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                      +|.|+.+|.++.+-||...||+|+..+.....+.. +++..  ++..|...+-+.+.+|+++++.++..+-+.+.
T Consensus       436 ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  436 IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999988764322212 22222  45566666667899999999999987766543

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.36  E-value=1.6e-11  Score=107.62  Aligned_cols=117  Identities=32%  Similarity=0.537  Sum_probs=110.2

Q ss_pred             HHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh
Q 035507          457 VIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR  536 (684)
Q Consensus       457 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  536 (684)
                      +.+.|+++.+++++.++++.++..|++++++++.+.+.....+++.|+++.+.+++.++ ++.++..|+|+|+|++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56789999999999999999999999999999999888888899999999999999998 99999999999999999887


Q ss_pred             HHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507          537 EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS  574 (684)
Q Consensus       537 ~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~  574 (684)
                      .....+.+.|+++.+++.+...+.++++.|+|++.+++
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            88888889999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.36  E-value=1e-11  Score=108.82  Aligned_cols=119  Identities=35%  Similarity=0.596  Sum_probs=109.7

Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC
Q 035507          286 EVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS  365 (684)
Q Consensus       286 ~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~  365 (684)
                      .+++.|+++.+++++.+++ +.++..|+++|.+++.++++....+++.|+++.++.+|.++++.++..|+|+|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999888 899999999999999988999999999999999999999999999999999999999988


Q ss_pred             CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          366 SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       366 ~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      +..+..+...|+++.++..+ ...+..+++.++|+|.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77777788899999999999 56688999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.33  E-value=1.7e-10  Score=128.95  Aligned_cols=356  Identities=17%  Similarity=0.242  Sum_probs=223.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+..+.+.+.++|+.++-.|++++.++...      .+++ .+++.+.+++.+++ +.+|..|+.++..+...+++... 
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~------~~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~-  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP------EMAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE-  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH------HHHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH-
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhccc------chhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH-
Confidence            566677777778888888888888776521      2222 25677777887777 78888888888888775444322 


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhcc
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~  406 (684)
                        .. .++.+..+|.++++.++..|+.++..+ ...+.    ... ..++.++..+.   ...++-.+..++.++..++.
T Consensus       151 --~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~----~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  151 --DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD----SYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             --GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH----HHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             --HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc----hhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence              11 477777888777888888888888887 11111    000 23444444443   55677777777777776665


Q ss_pred             CCCCCChhhh--hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507          407 GKPRPLFDQV--RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT  484 (684)
Q Consensus       407 ~~~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  484 (684)
                      ..+    ...  ..+++.+..++.+.++.+...++.++.++. . ...     .-..+++.+..++.++++.++..++.+
T Consensus       222 ~~~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~-~-~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~  290 (526)
T PF01602_consen  222 MEP----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS-P-SPE-----LLQKAINPLIKLLSSSDPNVRYIALDS  290 (526)
T ss_dssp             SSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S-SHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             CCh----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh-c-chH-----HHHhhHHHHHHHhhcccchhehhHHHH
Confidence            431    122  457777777777888888888888888877 3 222     233567788888888888888888888


Q ss_pred             HHHHHcCChhhHHHHHhcCChHHHHHHhc-cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-cCCHhH
Q 035507          485 VGNIVMGDDFQTQCIINHGAVPCLLALLI-HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-NAEFDI  562 (684)
Q Consensus       485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-~~~~~v  562 (684)
                      +..++...+..    +.  .....+..+. ++ +..+|..+...+..++..  .+...     +++.|...+. ..+.++
T Consensus       291 L~~l~~~~~~~----v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~~--~n~~~-----Il~eL~~~l~~~~d~~~  356 (526)
T PF01602_consen  291 LSQLAQSNPPA----VF--NQSLILFFLLYDD-DPSIRKKALDLLYKLANE--SNVKE-----ILDELLKYLSELSDPDF  356 (526)
T ss_dssp             HHHHCCHCHHH----HG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH--H--HHHHH-----HHHHHHHHHHHC--HHH
T ss_pred             HHHhhcccchh----hh--hhhhhhheecCCC-ChhHHHHHHHHHhhcccc--cchhh-----HHHHHHHHHHhccchhh
Confidence            88887766221    11  1222233444 55 788888888888888752  33332     5667777774 447788


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHH
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEE  642 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~  642 (684)
                      +..++.+++.++....+...      -+++.+.+++...+..+...+...+.+++...+...            ...   
T Consensus       357 ~~~~i~~I~~la~~~~~~~~------~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~---  415 (526)
T PF01602_consen  357 RRELIKAIGDLAEKFPPDAE------WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI---  415 (526)
T ss_dssp             HHHHHHHHHHHHHHHGSSHH------HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH---
T ss_pred             hhhHHHHHHHHHhccCchHH------HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH---
Confidence            88888888888753211111      136677777776666666666666777665533221            111   


Q ss_pred             hchHHHH-HHhhcCCCHHHHHHHHHHHHHhc
Q 035507          643 AEGLEKI-ENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       643 ~g~~~~L-~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                         +..+ +.+....++++...+.+++-+|-
T Consensus       416 ---l~~L~~~l~~~~~~~~~~~~~wilGEy~  443 (526)
T PF01602_consen  416 ---LKKLIELLEDISSPEALAAAIWILGEYG  443 (526)
T ss_dssp             ---HHHHHHHHTSSSSHHHHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHhhHHHHHHHHHhhhcccC
Confidence               2233 22344567778888888888874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.31  E-value=4.6e-10  Score=125.50  Aligned_cols=331  Identities=18%  Similarity=0.188  Sum_probs=245.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ...+.+++.+.+.|...+.-+-.++..+...+++... +    +++.+.+=|.+++ +.++..|+.++++++.  ++...
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~-l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~  113 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI-L----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE  113 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH-H----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH-H----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence            3678899999999999999888888887665533111 1    4667777788888 9999999999999985  44333


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .     .++.+..++.++++.||..|+.++..+....|..   +... .++.+..++ .+.++.+...|+.++..+ +..
T Consensus       114 ~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~  182 (526)
T PF01602_consen  114 P-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN  182 (526)
T ss_dssp             H-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred             H-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence            3     4788899999999999999999999998776553   2222 477777777 778899999999999999 222


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                      +..........++.+.+++...++..+..++..+..++ .........   ..+++.+..++.+.++.+...|++++..+
T Consensus       183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~-~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA-PMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-SSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-cCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            11111345666677777778899999999999999998 555544422   45788888888888999999999999887


Q ss_pred             HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507          489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW  568 (684)
Q Consensus       489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~  568 (684)
                      ....+      .-..+++.|..++.++ ++.+|..+...+..++...+....     .....+..+..+.+..++..++.
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~  326 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALD  326 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHH
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHH
Confidence            65333      2224788999999988 999999999999999886533322     12222333334779999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhc-cCCChHHHHHHHHHHHHHHhcccc
Q 035507          569 AISNASSRGTHDQIKYLVTEGCIKPLCDLL-QCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       569 aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL-~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      .+.+++.   +.....     +++.|...+ ...+++++..++..+..+......
T Consensus       327 lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~  373 (526)
T PF01602_consen  327 LLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP  373 (526)
T ss_dssp             HHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred             HHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence            9999985   444444     567788888 455888999998888888776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.25  E-value=5.5e-09  Score=109.00  Aligned_cols=322  Identities=16%  Similarity=0.219  Sum_probs=226.4

Q ss_pred             CChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhh-----cCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          334 DAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLS-----EGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       334 g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-----~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..+..++.++.. .++++.+.++..+.-+..+.+.....+.+     .....+++.+| +..|..+...++..|+.+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            345666666655 56777778888888777766653333333     24567888877 567888889999999998876


Q ss_pred             CCCCCh-hhhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--CcccHhHHHH
Q 035507          408 KPRPLF-DQVRPALPALAQLIHSN-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--SPSVLTPALW  483 (684)
Q Consensus       408 ~~~~~~-~~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~  483 (684)
                      .+.... ......++.+...+... +...+.-++.++..+.  ..+..+..+.+.++++.|+.+|+..  ...++..++.
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL--~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll  209 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL--RVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF  209 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh--CCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence            533222 12223444555556543 4667777788999988  4556677788888999999999763  3477889999


Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC------hHHHHHHHHhCCHHHHHHHhcc
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN------REQIQAVIDAGLIGPLVNLLQN  557 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~g~l~~Li~ll~~  557 (684)
                      ++.-++...+ ........++++.++.++......++-+-+..++.|+...+      ......+++.|+++.+-.+...
T Consensus       210 ~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r  288 (429)
T cd00256         210 CIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR  288 (429)
T ss_pred             HHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence            9999987555 55556678999999999987767889999999999998732      2234556677776655555444


Q ss_pred             C--CHhHHHHHHHHH-------HHhhcC---------C---------C----HHHHHHHHHCC--ChHHHHhhcc-CCCh
Q 035507          558 A--EFDIKEEAAWAI-------SNASSR---------G---------T----HDQIKYLVTEG--CIKPLCDLLQ-CADP  603 (684)
Q Consensus       558 ~--~~~v~~~a~~aL-------~nl~~~---------~---------~----~~~~~~l~~~g--~l~~L~~lL~-~~~~  603 (684)
                      +  |+++.......-       ..+++.         |         +    .++...+.+.+  +++.|.++|+ +.|+
T Consensus       289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence            3  666543322111       111110         0         1    23455666554  4788999984 6688


Q ss_pred             HHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          604 KIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       604 ~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      .+...|+.=+..+++.-+..             ...+++.|+-+.+..|..|+|++|+..|...+++..
T Consensus       369 ~~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             ceeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            88999999999999876543             366888999999999999999999999999998764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.21  E-value=3.8e-09  Score=110.21  Aligned_cols=279  Identities=17%  Similarity=0.162  Sum_probs=204.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ....++..|+++|.-++..|+..+..+++............-..+.+...+++++....+..|+.+|..+.. .+..|..
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~  180 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFA  180 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHH
Confidence            456777888889999999999999999876553222111112444566666654436788889999999998 7889999


Q ss_pred             HHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          330 VIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      +.+.++++.|+.+|+.  .+..++.+++.+++-++-+.+ ..+.....+.++.++..+.....+.+.|.++.++.|+...
T Consensus       181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~  259 (429)
T cd00256         181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK  259 (429)
T ss_pred             HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence            9999999999999976  356899999999999987765 3445566789999999998888999999999999999986


Q ss_pred             CC----CC--ChhhhhchHHHHHHHhcC---CcHHHHHHHHHHH-------HhhccCCCh--------------------
Q 035507          408 KP----RP--LFDQVRPALPALAQLIHS---NDEQVLTDACWAL-------FGLSGDRNN--------------------  451 (684)
Q Consensus       408 ~~----~~--~~~~~~~~l~~L~~lL~~---~d~~v~~~al~~L-------~~L~~~~~~--------------------  451 (684)
                      ..    ..  ....+...++.++..|..   .|+++..+.-..-       ..++  .-+                    
T Consensus       260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~lt--sfD~Y~~El~sg~L~WSp~H~se  337 (429)
T cd00256         260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLS--SFDEYKSELRSGRLHWSPVHKSE  337 (429)
T ss_pred             ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHhcCCccCCCCCCCc
Confidence            41    11  112234344555555542   4666554432211       1111  111                    


Q ss_pred             ----HHHHHHHHh--chHHHHHHhcC-CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHH
Q 035507          452 ----DKIQAVIEA--GVCGRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEV  524 (684)
Q Consensus       452 ----~~~~~~~~~--g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a  524 (684)
                          ++...+-+.  .++..|+++|. +.++.+..-||.=||.++...|..+..+-+.|+=..+++++.++ +++||++|
T Consensus       338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eA  416 (429)
T cd00256         338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEA  416 (429)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHH
Confidence                122233333  36788999994 56788889999999999999998888788899999999999999 99999999


Q ss_pred             HHHHHHHhc
Q 035507          525 SWIISNIAC  533 (684)
Q Consensus       525 ~~~L~nl~~  533 (684)
                      ..++..+..
T Consensus       417 L~avQklm~  425 (429)
T cd00256         417 LLAVQKLMV  425 (429)
T ss_pred             HHHHHHHHH
Confidence            999987754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=4.8e-09  Score=112.88  Aligned_cols=342  Identities=15%  Similarity=0.139  Sum_probs=247.8

Q ss_pred             cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          250 ILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       250 ~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      .+|.|+.+|+. .+.+++..|++++..++..-++....+++.++||.|++-|..-.+-++.++++.+|-.|+.   ++-.
T Consensus       212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H~~  288 (1051)
T KOG0168|consen  212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RHPK  288 (1051)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hccH
Confidence            67899999985 5699999999999999998888888999999999999988877778999999999999998   4457


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ++.++|++...+.+|.--+..+++.|+.+..|+|..-+ +--..+.+  ++|.|..+| +..|......++-++..++.+
T Consensus       289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d~  365 (1051)
T KOG0168|consen  289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIADG  365 (1051)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHHh
Confidence            88899999999999988889999999999999995332 11233333  566777777 777888888999999888877


Q ss_pred             C-CCCCh---hhhhchHHHHHHHhcCCc----HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC-----
Q 035507          408 K-PRPLF---DQVRPALPALAQLIHSND----EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS-----  474 (684)
Q Consensus       408 ~-~~~~~---~~~~~~l~~L~~lL~~~d----~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~-----  474 (684)
                      . +.+..   ....+++..+.+++.-.+    ..+..-.++.+.-++ .+.+.....+...++...|..+|....     
T Consensus       366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~ms-S~~pl~~~tl~k~~I~~~L~~il~g~s~s~na  444 (1051)
T KOG0168|consen  366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMS-SGSPLLFRTLLKLDIADTLKRILQGYSKSANA  444 (1051)
T ss_pred             cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHc-cCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence            6 22222   223777778888876443    344556677788888 776777777777787777777775411     


Q ss_pred             ----cccH-----hH----------------------------------------------------HHHHHHHH-----
Q 035507          475 ----PSVL-----TP----------------------------------------------------ALWTVGNI-----  488 (684)
Q Consensus       475 ----~~v~-----~~----------------------------------------------------al~~L~nl-----  488 (684)
                          .-.+     ..                                                    -.+.+..+     
T Consensus       445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~  524 (1051)
T KOG0168|consen  445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG  524 (1051)
T ss_pred             ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence                0000     00                                                    00111100     


Q ss_pred             --------Hc---------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhC-CHH
Q 035507          489 --------VM---------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAG-LIG  549 (684)
Q Consensus       489 --------~~---------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g-~l~  549 (684)
                              -.         ..++..+.++. .++|.|+++..+..++.||..+..+|..+.. .+.+-+..++... +-.
T Consensus       525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS  603 (1051)
T KOG0168|consen  525 TSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS  603 (1051)
T ss_pred             cchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence                    00         00111111111 3688999999877799999999999999876 5677777777554 445


Q ss_pred             HHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 035507          550 PLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ  599 (684)
Q Consensus       550 ~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~  599 (684)
                      .+-.++...+..+..-|+...--++..-..-+...+.+.|++..+.++..
T Consensus       604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            66667888888887777777766666555556778889999988888876

>PTZ00429 beta-adaptin; Provisional

Probab=99.19  E-value=8.9e-08  Score=107.68  Aligned_cols=261  Identities=14%  Similarity=0.064  Sum_probs=186.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ...+.+++.+.++|.+++.-....+.+.+...++..-     -+++.|.+=+.+++ |.+|..|+++|+.|..  ++...
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e  139 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE  139 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence            3678889999999999998888888887654432211     14677788888887 9999999999988776  22222


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                           -.++.+.+.+.+.++-||..|+.++.++....++   .+...+.++.|..++ .+.++.+..+|+.+|..++...
T Consensus       140 -----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        140 -----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence                 2356677888899999999999999999876654   344566778888876 7889999999999999998765


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                      +. ........+..++..+..-++..+..++.+|.... ..+....     ..++..+...|++.++.|...|++++.++
T Consensus       211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~-P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQR-PSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC-CCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            43 24444566666777777778888888888887654 2222211     25678888999999999999999999988


Q ss_pred             HcCC-hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh
Q 035507          489 VMGD-DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR  536 (684)
Q Consensus       489 ~~~~-~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  536 (684)
                      .... +...+.+. ..+-+.++.++ ++ ++++|..+...+.-++...+
T Consensus       284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence            7543 22222211 12234555554 44 56777777777666655443

>PTZ00429 beta-adaptin; Provisional

Probab=99.16  E-value=3.2e-07  Score=103.25  Aligned_cols=294  Identities=16%  Similarity=0.102  Sum_probs=206.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      |-+..+.+.|++.+...+..|++.+........+..      .+.+-+++++.+++ .+++.-..-.+.+.+...++..-
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelal  104 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKAL  104 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHH
Confidence            456788889999888888888876665554433222      24567778888887 89999988889999886655332


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .     ++..|.+=+.++++.+|..|+++|++|-..     +. . .-.+.++...+ .+.++-+++.|+.++..+.+..
T Consensus       105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i-~-e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~  171 (746)
T PTZ00429        105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV-L-EYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD  171 (746)
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH-H-HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence            2     367778888899999999999999998422     11 1 12345566666 7889999999999999998765


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                      |.  .....+.++.+..++.+.|+.|+.+|+.+|..+. ...+....  ...+.+..++..+..-++-.+...+.+|...
T Consensus       172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~-~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN-DYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHH-HhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            42  2234567888999999999999999999999998 54433322  3345677788878766666777777777543


Q ss_pred             HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507          489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA  567 (684)
Q Consensus       489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~  567 (684)
                      .-.++...     ..++..+...|++. ++.|.-+|+.++.+++.. +++.+..+.. .+-++++.+ .+++++++..++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence            22222111     23677888888898 899999999999999764 2333333322 234566665 456788888888


Q ss_pred             HHHHHhhc
Q 035507          568 WAISNASS  575 (684)
Q Consensus       568 ~aL~nl~~  575 (684)
                      ..+.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            77766654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=3.8e-08  Score=105.25  Aligned_cols=361  Identities=15%  Similarity=0.159  Sum_probs=238.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ++|-+-+.++++|+.-+..|+.++..++.+..+....-+..+++|.++.++.++. --++..++|+|+.++.+.++....
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~n  443 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAIIN  443 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhccc
Confidence            3455555788999999999999999999887766666677889999999999776 688899999999999977654432


Q ss_pred             HH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC-----chhHhhcCCHHHHHHHhccC------CchHHHHHH
Q 035507          330 VI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC-----RDLVLSEGALIPLLAQLNEH------TELSMLRIA  397 (684)
Q Consensus       330 i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~-----r~~i~~~g~l~~Ll~~L~~~------~~~~v~~~a  397 (684)
                      .. ..+.++.++.-|. ..|.+..+++|++.+++...++.     ...... ...+.++.-|...      .+..++..|
T Consensus       444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA  521 (859)
T KOG1241|consen  444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA  521 (859)
T ss_pred             HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence            22 2344555555444 46889999999999998332110     001111 2345555555322      345788899


Q ss_pred             HHHHHHhccCCCCCChhhhhchHHHHHHHh---------cCCc----HHHHHHHHHHHHhhccCCChHHHHHHHHhchHH
Q 035507          398 TTTLSNLCRGKPRPLFDQVRPALPALAQLI---------HSND----EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCG  464 (684)
Q Consensus       398 ~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL---------~~~d----~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~  464 (684)
                      ..+|..+....+......+.+....+..-|         ...|    .+++...|.+|..+. ......+..+.+ .++.
T Consensus       522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~-rk~~~~~~~~~d-~iM~  599 (859)
T KOG1241|consen  522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSII-RKVGSDIREVSD-QIMG  599 (859)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHH-HHccccchhHHH-HHHH
Confidence            999999999876665555555555554422         2222    456677777777766 332223333333 3667


Q ss_pred             HHHHhcCC-CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507          465 RLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI  543 (684)
Q Consensus       465 ~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  543 (684)
                      .++.++.+ .+..+.+.|+.+++.++..-..+...-+ ..+.|.|..-|+...+..|-..|...++.++..-.+.+....
T Consensus       600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~  678 (859)
T KOG1241|consen  600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC  678 (859)
T ss_pred             HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            78888877 5666788899999888865443333222 246788888885554778888899999999875434444443


Q ss_pred             HhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCC----------hHHHHHHH
Q 035507          544 DAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ-CAD----------PKIVTVCL  610 (684)
Q Consensus       544 ~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~-~~~----------~~v~~~al  610 (684)
                      + +++..|++.|+++  +..+|-....+++.++..-..++.+|+-.  ++..+.+.-. ..+          .+++..++
T Consensus       679 d-~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~--vm~llq~as~~~~d~~~~~~~dYvd~LRe~~l  755 (859)
T KOG1241|consen  679 D-ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEM--VMPLLQQASSVQTDPADDSMVDYVDELREGIL  755 (859)
T ss_pred             H-HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHhccCCCCcccHHHHHHHHHHHHH
Confidence            3 5888999999887  67788888889998887655666666432  2222222211 111          24677777


Q ss_pred             HHHHHHHhc
Q 035507          611 EGLENILKV  619 (684)
Q Consensus       611 ~~L~~il~~  619 (684)
                      ++..-|+..
T Consensus       756 eay~gi~qg  764 (859)
T KOG1241|consen  756 EAYTGIIQG  764 (859)
T ss_pred             HHHHHHHHH
Confidence            777766654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=8e-08  Score=102.83  Aligned_cols=360  Identities=12%  Similarity=0.074  Sum_probs=227.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507          253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE  332 (684)
Q Consensus       253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~  332 (684)
                      .+.+.|.+..+...-.|++++..++..+-|+-.   -.++++.|+.....+....++..++.+++.+|.+-......-..
T Consensus        94 ~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~---wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~s  170 (859)
T KOG1241|consen   94 NILRTLGSPEPRRPSSAAQCVAAIACIELPQNQ---WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQS  170 (859)
T ss_pred             HHHHHcCCCCCCccchHHHHHHHHHHhhCchhh---CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            344556666666666777777777765432211   13456666666666653469999999999999843222111122


Q ss_pred             cCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          333 HDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       333 ~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      ..++..++.-+..  ++..+|-.|..+|.|--.-.. ++... .+.+.+-..+--.-+++|.+++..|..+|..+..-..
T Consensus       171 N~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY  249 (859)
T KOG1241|consen  171 NDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY  249 (859)
T ss_pred             hHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence            3567777776655  678899999999988542111 00000 1111111111112267899999999999988765431


Q ss_pred             CCChh-hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHH---------------HHHH---HHhchHHHHHHhc
Q 035507          410 RPLFD-QVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK---------------IQAV---IEAGVCGRLVELL  470 (684)
Q Consensus       410 ~~~~~-~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~---------------~~~~---~~~g~l~~L~~lL  470 (684)
                      ..... .....++.-...+.+++++|...+..--+++| +...+.               ...+   .-.+++|.|+++|
T Consensus       250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWstic-eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L  328 (859)
T KOG1241|consen  250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC-EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELL  328 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHH
Confidence            11111 22345555566677889999888877777776 322110               0001   1125788888888


Q ss_pred             CC-------CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507          471 GH-------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI  543 (684)
Q Consensus       471 ~~-------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  543 (684)
                      ..       +++.+...|-.||.-++....+.+   +. -++|.+-+-++++ +..-|..|+.+++.+..+.......-+
T Consensus       329 ~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I---v~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~i  403 (859)
T KOG1241|consen  329 TKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI---VP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPI  403 (859)
T ss_pred             HhCCCCcccccCcHHHHHHHHHHHHHHHhcccc---hh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHH
Confidence            55       345677888888888775443221   11 3556666667778 999999999999999987555554455


Q ss_pred             HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          544 DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       544 ~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      ..+.+|.++.++.++..-++..++|+++.++..............+.+..+..-|+ +.|.+..++.|++..+.+...+.
T Consensus       404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA  482 (859)
T KOG1241|consen  404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEA  482 (859)
T ss_pred             HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHh
Confidence            56799999999998899999999999999997542111111122233444444443 47889999999999999765443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=7.3e-07  Score=95.87  Aligned_cols=326  Identities=15%  Similarity=0.168  Sum_probs=236.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCC--
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSS--  366 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~--  366 (684)
                      .-|+.|+.-+.+..-.+-|..|+.+|..++.   .+|..+...| +++|++.|+.  .++++...++.++.++..+..  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            3577888877776557889999999999997   6777777665 8999999987  578999999999999985542  


Q ss_pred             ----CCc----------h-hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCCh---hhhhchHHHHHHHhc
Q 035507          367 ----GCR----------D-LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF---DQVRPALPALAQLIH  428 (684)
Q Consensus       367 ----~~r----------~-~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~---~~~~~~l~~L~~lL~  428 (684)
                          ..+          + .+...+.+..++..+ ...|-.++..++..++++.+..|....   ...+.++..++.+|.
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                111          1 123445677777777 677889999999999999888754332   233788999999999


Q ss_pred             CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC----CcccHhHHHHHHHHHHcCChhhHHHHHhcCC
Q 035507          429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP----SPSVLTPALWTVGNIVMGDDFQTQCIINHGA  504 (684)
Q Consensus       429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~  504 (684)
                      +..+.++.+++..|..++ ..+....+.+.-.+++.+|+.++...    ..-|...|+..+.|+...+......+.+.+.
T Consensus       177 DsrE~IRNe~iLlL~eL~-k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELV-KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhchhHHHHHHHHH-ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            999999999999999999 66655555556668999999999652    3467889999999999988888888889999


Q ss_pred             hHHHHHHhccCC--C-----hhHH-----HHHHHHHHHHhc-CC----hHHH-HHHHHhCCHHHHHHHhccC--CHhHHH
Q 035507          505 VPCLLALLIHNH--K-----NSIK-----KEVSWIISNIAC-GN----REQI-QAVIDAGLIGPLVNLLQNA--EFDIKE  564 (684)
Q Consensus       505 l~~L~~lL~~~~--~-----~~v~-----~~a~~~L~nl~~-~~----~~~~-~~l~~~g~l~~Li~ll~~~--~~~v~~  564 (684)
                      +|.|.++|.-..  +     +.-+     ..|..++.-+.. ++    ..+. ..+...+++..|+.++.+.  ..+++.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            999998884321  2     1112     234455555544 22    2233 3456788999999998776  678999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHCC----------ChHHHHhhccC-CChHHHHHHHHHHHHHHhccccc
Q 035507          565 EAAWAISNASSRGTHDQIKYLVTEG----------CIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       565 ~a~~aL~nl~~~~~~~~~~~l~~~g----------~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      ++..++++++.+. ......+.+..          ++--+..+..+ ..+..+..++.++..++..+...
T Consensus       336 esiitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  336 ESIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            9999999999854 33334444311          12223333333 45668888888888887765543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.5e-07  Score=93.67  Aligned_cols=190  Identities=19%  Similarity=0.212  Sum_probs=161.7

Q ss_pred             CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHH
Q 035507          429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL  508 (684)
Q Consensus       429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L  508 (684)
                      +.+.+-+..|+.-|.+++  .+-++...++..|++..++..+.+.+..+|..|+++|+..+..++.....+++.|+++.|
T Consensus        94 s~~le~ke~ald~Le~lv--e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELV--EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHH--HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            456788899999999998  455677788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc--CCHhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 035507          509 LALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN--AEFDIKEEAAWAISNASSRGTHDQIKYLV  586 (684)
Q Consensus       509 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~  586 (684)
                      +..+.+..+..+|..|.++++.+....+.....+...+....|..++++  .+..++..|+..+..++... ......+.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~  250 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIAS  250 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHH
Confidence            9999877567888999999999999988888889988889999999998  57888899999999998743 33334555


Q ss_pred             HCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          587 TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       587 ~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                      ..+....+..+....+.++...++.++-..+..-.
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            67777778888888888888888887777665443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.95  E-value=5.6e-08  Score=97.76  Aligned_cols=276  Identities=16%  Similarity=0.142  Sum_probs=203.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcH---HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPI---EEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~---~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      ...++..+..+|.-+...+.+.+.++++..+...   +.-+.   ...+-..++++.+++-..-|++||..+.. -++.|
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR  191 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYR  191 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchh
Confidence            4678888899998888888899999887765222   22222   23344455553335677788999999998 78899


Q ss_pred             HHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507          328 KVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC  405 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~  405 (684)
                      ..++..+++..++..+.+  .+..++.+.+.+++-++-.++.+ +.+...+.++.|...+..+..+.+.+-++.++.|++
T Consensus       192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll  270 (442)
T KOG2759|consen  192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLL  270 (442)
T ss_pred             heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998843  57889999999999998777654 556778889999999988889999999999999999


Q ss_pred             cCCCCCCh------hhhhchHHHHHHHhc---CCcHHHHHHHHHHHHhhccC------CCh-------------------
Q 035507          406 RGKPRPLF------DQVRPALPALAQLIH---SNDEQVLTDACWALFGLSGD------RNN-------------------  451 (684)
Q Consensus       406 ~~~~~~~~------~~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~L~~~------~~~-------------------  451 (684)
                      ...+....      ..+..-++..++.|.   -+|+++..+.-..-..|- .      ..+                   
T Consensus       271 ~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~-~svq~LsSFDeY~sEl~sG~L~WSP~Hk~  349 (442)
T KOG2759|consen  271 DKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK-NSVQDLSSFDEYKSELRSGRLEWSPVHKS  349 (442)
T ss_pred             ccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence            88743322      223444455555554   246665544333222211 0      011                   


Q ss_pred             -----HHHHHHHHh--chHHHHHHhcCCCC-cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHH
Q 035507          452 -----DKIQAVIEA--GVCGRLVELLGHPS-PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKE  523 (684)
Q Consensus       452 -----~~~~~~~~~--g~l~~L~~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~  523 (684)
                           ++...+.+.  .++..|+++|...+ |.+..-||.=||...+..|.....+.+.|+=..++.++.++ +++||.+
T Consensus       350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~  428 (442)
T KOG2759|consen  350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYH  428 (442)
T ss_pred             cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHH
Confidence                 112222222  37888999997754 88889999999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHhc
Q 035507          524 VSWIISNIAC  533 (684)
Q Consensus       524 a~~~L~nl~~  533 (684)
                      |..++-.+..
T Consensus       429 ALlavQ~lm~  438 (442)
T KOG2759|consen  429 ALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHh
Confidence            9998877654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=1.2e-06  Score=94.38  Aligned_cols=328  Identities=17%  Similarity=0.178  Sum_probs=237.2

Q ss_pred             chhhhccHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhc
Q 035507          244 LHTKLEILPMMVAGVWSDD-NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE-DYPQLQFQAAWALTNIAS  321 (684)
Q Consensus       244 ~~~~~~~l~~lv~~L~s~~-~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~  321 (684)
                      +....+.++.++..+.+.. .+-|..|+++|..++..   . +..+.+.+++.|++.|..+ .++++...|+..+.++..
T Consensus        17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---Y-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~   92 (970)
T KOG0946|consen   17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---Y-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS   92 (970)
T ss_pred             cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---H-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence            3334568899999888665 68899999999876543   3 3445566788899999764 358999999999999988


Q ss_pred             CCc------hhH----------HHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhc-CCHHHHH
Q 035507          322 GTS------ENT----------KVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSE-GALIPLL  382 (684)
Q Consensus       322 ~~~------~~~----------~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~-g~l~~Ll  382 (684)
                      .++      +.+          +.++ ..+.|..++..+...+-.||..++..+.++-... ++.++.+... -++..++
T Consensus        93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm  172 (970)
T KOG0946|consen   93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM  172 (970)
T ss_pred             cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence            542      111          2233 4578999999999999999999999999987554 4566666543 4688899


Q ss_pred             HHhccCCchHHHHHHHHHHHHhccCCCCCChh-hhhchHHHHHHHhcCC---c-HHHHHHHHHHHHhhccCCChHHHHHH
Q 035507          383 AQLNEHTELSMLRIATTTLSNLCRGKPRPLFD-QVRPALPALAQLIHSN---D-EQVLTDACWALFGLSGDRNNDKIQAV  457 (684)
Q Consensus       383 ~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~-~~~~~l~~L~~lL~~~---d-~~v~~~al~~L~~L~~~~~~~~~~~~  457 (684)
                      ..| .+.-..++..++..|+.+.++.+..... ....++..|..++..+   | .-|..+++..+.|+. ..+..+.+.+
T Consensus       173 dlL-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL-K~N~SNQ~~F  250 (970)
T KOG0946|consen  173 DLL-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL-KNNISNQNFF  250 (970)
T ss_pred             HHH-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH-hhCcchhhHH
Confidence            999 6666778888999999999987554443 3488889999988743   3 357888999999999 8888899999


Q ss_pred             HHhchHHHHHHhcCCC---C-----ccc-----HhHHHHHHHHHHcCC-----hhhH-HHHHhcCChHHHHHHhccC-CC
Q 035507          458 IEAGVCGRLVELLGHP---S-----PSV-----LTPALWTVGNIVMGD-----DFQT-QCIINHGAVPCLLALLIHN-HK  517 (684)
Q Consensus       458 ~~~g~l~~L~~lL~~~---~-----~~v-----~~~al~~L~nl~~~~-----~~~~-~~~i~~g~l~~L~~lL~~~-~~  517 (684)
                      .+.+.+|+|.++|...   +     +..     ...|+.++..++.-.     ..+. +.+..++++..|..++.++ -.
T Consensus       251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp  330 (970)
T KOG0946|consen  251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP  330 (970)
T ss_pred             hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence            9999999999888542   2     111     234556666655321     1122 4566788999999998776 36


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHhCC----------HHHHHHHhccC-CHhHHHHHHHHHHHhhcCC
Q 035507          518 NSIKKEVSWIISNIACGNREQIQAVIDAGL----------IGPLVNLLQNA-EFDIKEEAAWAISNASSRG  577 (684)
Q Consensus       518 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~----------l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~  577 (684)
                      .+|+.++.-+++++.+++...-..+.+..+          +-.++.+.... .+..|..+.+++..+....
T Consensus       331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  331 ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            789999999999999988766666654221          11223333333 6788888888888887643

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.92  E-value=5.2e-08  Score=100.41  Aligned_cols=228  Identities=21%  Similarity=0.266  Sum_probs=163.8

Q ss_pred             hHHHHHhcC--CCChHHHHHHHHHHHHhhCCCCCCchhHhh------cCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          336 VPIFVKLLA--SPSDDVREQAVWALGNVAADSSGCRDLVLS------EGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       336 i~~Li~lL~--~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~------~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ...++.+|+  ++++++.+.++..+..+..+.+...+.+..      .....+++.++ +.+|..+...++..|..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            455555554  368899999999999999998876666554      23578888866 667999999999999999988


Q ss_pred             CCCCChhhhhchHHHHHHHhc----CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc-----CC--CCcc
Q 035507          408 KPRPLFDQVRPALPALAQLIH----SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL-----GH--PSPS  476 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL-----~~--~~~~  476 (684)
                      .+........+.++.+++.+.    +++.+.+.-++.++.++.  ..+..+..+.+.++++.+..++     .+  ....
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL--~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL--RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH--TSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh--CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            766555544566666666665    456777899999999999  6778888899999999999999     22  3456


Q ss_pred             cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH-HHHHHHHhCCHHHHHHHh
Q 035507          477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE-QIQAVIDAGLIGPLVNLL  555 (684)
Q Consensus       477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~g~l~~Li~ll  555 (684)
                      ++..++.++.-++. ++.....+.+.++++.|..++......++.+-+..++.|+....+. ....++..|+++.+-.+.
T Consensus       214 l~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~  292 (312)
T PF03224_consen  214 LQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS  292 (312)
T ss_dssp             HHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence            78899999998876 4457777888899999999998776889999999999999985443 777788888877777766


Q ss_pred             ccC--CHhHHHHHH
Q 035507          556 QNA--EFDIKEEAA  567 (684)
Q Consensus       556 ~~~--~~~v~~~a~  567 (684)
                      ...  |+++....-
T Consensus       293 ~rk~~Dedl~edl~  306 (312)
T PF03224_consen  293 ERKWSDEDLTEDLE  306 (312)
T ss_dssp             SS--SSHHHHHHHH
T ss_pred             cCCCCCHHHHHHHH
Confidence            554  777665433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=4e-06  Score=89.50  Aligned_cols=219  Identities=16%  Similarity=0.157  Sum_probs=169.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ..+.++.+|++.-+-++..|+..+.++.-..++..+     ..+|+|++-|.+++ |.|+..|+.+++.+|..+|.+.-.
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~  218 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ  218 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc
Confidence            467889999999999999999999998776654333     36799999999999 999999999999999988875543


Q ss_pred             HHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH--Hhcc
Q 035507          330 VIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS--NLCR  406 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~--nL~~  406 (684)
                           .-|.+..+|.. .+.=+.-..+..+++|+--.|.....     .+++|..++.+..-..+...++-++.  +++.
T Consensus       219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                 35778888765 34335557888899998777764443     57899999966666666666665554  3333


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG  486 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  486 (684)
                      + .......+.-+++.|--++.+.|+..+.-++-+++.+. ...+...+..     -..++.+|.+.++.+|..|+..+.
T Consensus       289 g-~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~-ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  289 G-MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL-KTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             C-CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh-hhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence            3 23455666788888999999999999999999999999 5555544422     357889999999999999999998


Q ss_pred             HHHcC
Q 035507          487 NIVMG  491 (684)
Q Consensus       487 nl~~~  491 (684)
                      -++..
T Consensus       362 gmVsk  366 (877)
T KOG1059|consen  362 GMVSK  366 (877)
T ss_pred             HHhhh
Confidence            88753

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.1e-07  Score=94.58  Aligned_cols=186  Identities=23%  Similarity=0.210  Sum_probs=154.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 035507          259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPI  338 (684)
Q Consensus       259 ~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~  338 (684)
                      .+.+.+.+..|+..|..++..- ++...++..|++..++.++++++ +.+|..|+|+++.++..+|.....+++.|+++.
T Consensus        93 ~s~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~  170 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSK  170 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence            4567888999999998876543 57788899999999999999988 899999999999999999999999999999999


Q ss_pred             HHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCC-Chhh
Q 035507          339 FVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRP-LFDQ  415 (684)
Q Consensus       339 Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~-~~~~  415 (684)
                      |+..+.+ ++..++..|+.|++.+.+..+...+.+...++...|...+... .+..+++.++..+..+....... ....
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            9999987 5567889999999999999988888888888899999999643 67888999999999999887333 3333


Q ss_pred             hhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          416 VRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      ..+....+..+....+.++...++.++..+.
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            3444445666677778888888887776655

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.87  E-value=1.9e-06  Score=86.93  Aligned_cols=325  Identities=14%  Similarity=0.136  Sum_probs=220.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh------cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE------HDAVPIFVKLLASPSDDVREQAVWALGNVAADS  365 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~------~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~  365 (684)
                      .+..++.++++...++....++..+..+.+.+......+-.      .-.-..++.+|...+.-+.+.+.++++.++...
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g  145 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG  145 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence            45566777766544555555555555555533322222211      123677888999999999999999999998655


Q ss_pred             CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHH
Q 035507          366 SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALF  443 (684)
Q Consensus       366 ~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~  443 (684)
                      +.......-.-....|-..++++.+......++.+|..+.+.++-+.......++..++..+.  ..+-.++...+.+++
T Consensus       146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciW  225 (442)
T KOG2759|consen  146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIW  225 (442)
T ss_pred             cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHH
Confidence            431111000001233444454556777788899999999998755555555667777777663  456788999999999


Q ss_pred             hhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCCh------hhHHHHHhcCChHHHHHHhccCC
Q 035507          444 GLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDD------FQTQCIINHGAVPCLLALLIHNH  516 (684)
Q Consensus       444 ~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~i~~g~l~~L~~lL~~~~  516 (684)
                      -|+  .++..++.+...+.++.|..++++ ..++|..-.+.++.|+....+      +....++..++.+.+-.+.....
T Consensus       226 lLt--Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky  303 (442)
T KOG2759|consen  226 LLT--FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY  303 (442)
T ss_pred             Hhh--cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence            998  555666777777999999999976 467888889999999987763      34455667677666655553321


Q ss_pred             -ChhHHHHHHHHHHHHh-------c----------C----C---------hHHHHHHHHh--CCHHHHHHHhccC-CHhH
Q 035507          517 -KNSIKKEVSWIISNIA-------C----------G----N---------REQIQAVIDA--GLIGPLVNLLQNA-EFDI  562 (684)
Q Consensus       517 -~~~v~~~a~~~L~nl~-------~----------~----~---------~~~~~~l~~~--g~l~~Li~ll~~~-~~~v  562 (684)
                       |+++....-..-.-+.       .          |    +         .+++..+-+.  .++..|+++|+.. |+.+
T Consensus       304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i  383 (442)
T KOG2759|consen  304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII  383 (442)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence             4444433322222111       0          0    1         1223333332  3689999999877 5888


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      -..||.-++..+.. .|+....+.+.|+=+.+.++++++||+|+..|+.++..++..
T Consensus       384 L~VAc~DIge~Vr~-yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  384 LCVACHDIGEYVRH-YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             eehhhhhHHHHHHh-CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            88999999999984 577778888999999999999999999999999999988754

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=7e-07  Score=92.67  Aligned_cols=389  Identities=14%  Similarity=0.121  Sum_probs=235.2

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHH-HhcCCCHHHHHHHHHHHHHHhc
Q 035507          200 SAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVA-GVWSDDNNLQLEATTQFQKLLS  278 (684)
Q Consensus       200 ~~~~~~~~~~~~~r~~~r~~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~-~L~s~~~~~~~~a~~~L~~l~s  278 (684)
                      +..++|..+..++-|..|+..++--                ..+..   ..+..+.. ...+.+...+..++..+...+-
T Consensus        12 KlYekRKaaalelEk~Vk~l~~~~~----------------~~~i~---k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~i   72 (675)
T KOG0212|consen   12 KLYEKRKAAALELEKLVKDLVNNND----------------YDQIR---KVISELAGDYAYSPHANMRKGGLIGLAAVAI   72 (675)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCc----------------HHHHH---HHHHHHHHHhccCcccccccchHHHHHHHHH
Confidence            4456777888888887666332100                00111   12332222 3345554444455554444322


Q ss_pred             CCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHH
Q 035507          279 IESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWAL  358 (684)
Q Consensus       279 ~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L  358 (684)
                      .-. +.+.-.-.+++|+.+..+.+++ ..+|..|+..|.|++.. ........-..+...+.++..+++..++ .++..+
T Consensus        73 aLg-~~~~~Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLL  148 (675)
T KOG0212|consen   73 ALG-IKDAGYLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELL  148 (675)
T ss_pred             Hhc-cccHHHHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccc-cHHHHH
Confidence            111 1111255678999999999888 79999999999999982 1111112223445666666666666665 455556


Q ss_pred             HHhhCCCCCCchhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHH
Q 035507          359 GNVAADSSGCRDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVL  435 (684)
Q Consensus       359 ~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~  435 (684)
                      -.+..+-..-++.-.   -++.++.+|.   ...++..+...+.-|..+-..++..-......+++-|..+|.++.++|+
T Consensus       149 dRLikdIVte~~~tF---sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr  225 (675)
T KOG0212|consen  149 DRLIKDIVTESASTF---SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVR  225 (675)
T ss_pred             HHHHHHhcccccccc---CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHH
Confidence            665543322222111   2344444442   4457777877777777766554444445568889999999999999998


Q ss_pred             HHHHHHHHhhcc--CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507          436 TDACWALFGLSG--DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI  513 (684)
Q Consensus       436 ~~al~~L~~L~~--~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~  513 (684)
                      .-+=.+++.+..  ++++...   --...++.++.-+.++++.++..|+..|..+..-.+... ...-+|++..++.++.
T Consensus       226 ~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s  301 (675)
T KOG0212|consen  226 TLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLS  301 (675)
T ss_pred             HHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCC
Confidence            665555544430  1111111   112467889999999999999999999988886555332 2334577778888887


Q ss_pred             cCCCh-hHHHHHHHHHHHHhc--CChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 035507          514 HNHKN-SIKKEVSWIISNIAC--GNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEG  589 (684)
Q Consensus       514 ~~~~~-~v~~~a~~~L~nl~~--~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g  589 (684)
                      +. +. .++..|..+-..+..  +.+...+. ++ ..++..+...+.+...+.|-.+..-+..+......+...  ....
T Consensus       302 ~~-e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~  377 (675)
T KOG0212|consen  302 DT-EEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDS  377 (675)
T ss_pred             CC-ccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccH
Confidence            76 44 344443332212221  11111111 33 236888889999999999999986666666533222222  2456


Q ss_pred             ChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      +...|..-|.+.+.+++..++..+..++...+.
T Consensus       378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  378 IFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            788888899999999999999999999987654

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.79  E-value=1.8e-06  Score=92.13  Aligned_cols=269  Identities=18%  Similarity=0.202  Sum_probs=178.2

Q ss_pred             hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc--hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCC
Q 035507          336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCR--DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPL  412 (684)
Q Consensus       336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r--~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~  412 (684)
                      +...+..|+++++.+|++|+..++.++..-..|.  +.+...|.  .|...| ...+++++-..+.++..++... -...
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHHhcccccc
Confidence            4556667889999999999999999984332221  12223332  234445 6677888877777666665443 2223


Q ss_pred             hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC-
Q 035507          413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG-  491 (684)
Q Consensus       413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~-  491 (684)
                      ..-+.+++|.|..+|.+..+.++++++..++.++ +..++....--=..+.=-|+.+|...+..+|..|..++|.++.. 
T Consensus       878 ~pPi~dllPrltPILknrheKVqen~IdLvg~Ia-drgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIA-DRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHH-hcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            3345789999999999999999999999999999 77665432211112334467777788889999999999988743 


Q ss_pred             -ChhhHHHHHh-----------------------cC---ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH-HHHHHH
Q 035507          492 -DDFQTQCIIN-----------------------HG---AVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE-QIQAVI  543 (684)
Q Consensus       492 -~~~~~~~~i~-----------------------~g---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~  543 (684)
                       ..+....+++                       +|   ++|.|+.=...+ +..|+.-...+++.+.....+ ...++.
T Consensus       957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~FeyigemskdYiy 1035 (1172)
T KOG0213|consen  957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYIY 1035 (1172)
T ss_pred             CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHHH
Confidence             2222222221                       22   345554444555 677888888888777652212 222222


Q ss_pred             HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-------CCChHHHHHHHHHHHHH
Q 035507          544 DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ-------CADPKIVTVCLEGLENI  616 (684)
Q Consensus       544 ~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~-------~~~~~v~~~al~~L~~i  616 (684)
                        -+.|.|-+.|.+.|..-|..|+.++.+++.+..        -.|..+.+..+|+       ...|-++....+++..+
T Consensus      1036 --av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1036 --AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred             --HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH
Confidence              368888999999999999999999999987531        3355556666554       56777888877777766


Q ss_pred             Hhc
Q 035507          617 LKV  619 (684)
Q Consensus       617 l~~  619 (684)
                      -..
T Consensus      1106 r~~ 1108 (1172)
T KOG0213|consen 1106 RVA 1108 (1172)
T ss_pred             HHH
Confidence            543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.77  E-value=2.8e-07  Score=95.05  Aligned_cols=230  Identities=17%  Similarity=0.220  Sum_probs=167.2

Q ss_pred             HHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHHHh------chHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507          421 PALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVIEA------GVCGRLVELLGHPSPSVLTPALWTVGNIVMGD  492 (684)
Q Consensus       421 ~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~------g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  492 (684)
                      ..++.++.  ..+++++..++..+..+. ...+...+.+...      .....+++++.+++..+...|+++++.++...
T Consensus        58 ~~~l~lL~~~~~~~d~v~yvL~li~dll-~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   58 SLFLNLLNKLSSNDDTVQYVLTLIDDLL-SDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             ----HHHHHH---HHHHHHHHHHHHHHH-H-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            33444443  468899999999999998 6666666655552      25778888999999999999999999999877


Q ss_pred             hhhHHHHHhcCChHHHHHHhcc----CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh------cc-CCHh
Q 035507          493 DFQTQCIINHGAVPCLLALLIH----NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL------QN-AEFD  561 (684)
Q Consensus       493 ~~~~~~~i~~g~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll------~~-~~~~  561 (684)
                      +....... .+.++.++.++.+    + +..++..|+.++.++.. .++.+..+.+.++++.+..++      .. .+..
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~-~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSS-DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HH-HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            65444322 3466777777654    3 55677899999999986 468888899999999999999      22 2677


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHH
Q 035507          562 IKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLV  640 (684)
Q Consensus       562 v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i  640 (684)
                      ++.+++.++.-++-  +++.+..+.+.++++.|.++++. ...+++..++.++.|++....+.            +...+
T Consensus       214 l~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------------~~~~m  279 (312)
T PF03224_consen  214 LQYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------------NIELM  279 (312)
T ss_dssp             HHHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------------HHHHH
T ss_pred             HHHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------------HHHHH
Confidence            88899999998876  78899999999999999998874 57889999999999999876543            56778


Q ss_pred             HHhchHHHHHHhhcC--CCHHHHHHHHHHH
Q 035507          641 EEAEGLEKIENLQSH--DNNEIHEKSVKIL  668 (684)
Q Consensus       641 ~~~g~~~~L~~L~~~--~~~~i~~~a~~ii  668 (684)
                      -.+|++..++.|+..  .++|+.+--..+-
T Consensus       280 v~~~~l~~l~~L~~rk~~Dedl~edl~~L~  309 (312)
T PF03224_consen  280 VLCGLLKTLQNLSERKWSDEDLTEDLEFLK  309 (312)
T ss_dssp             HHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            889999999999654  6888876555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=2.8e-06  Score=91.97  Aligned_cols=369  Identities=14%  Similarity=0.147  Sum_probs=225.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ..|.+.++++..++-++..|+.++.++....+...+.     +++...++|.+.+ .-|-..++..+..++..+++....
T Consensus       143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~  216 (866)
T KOG1062|consen  143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY  216 (866)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence            5677777888888888888888888877666543332     4566777777766 677777788888888766655555


Q ss_pred             HHhcCChHHHHHhcCC---------------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC------
Q 035507          330 VIEHDAVPIFVKLLAS---------------PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH------  388 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~---------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~------  388 (684)
                      +-+  .++.|+..|++               ++|-++...++.|.-+-.+.+...+.+.      -++......      
T Consensus       217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~------DiLaqvatntdsskN  288 (866)
T KOG1062|consen  217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN------DILAQVATNTDSSKN  288 (866)
T ss_pred             HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH------HHHHHHHhccccccc
Confidence            443  45555555531               3577888888888888776665444332      222222111      


Q ss_pred             CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH
Q 035507          389 TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE  468 (684)
Q Consensus       389 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~  468 (684)
                      ....+...++.++..+-...     ....-++..|-++|.+.|..++.-++..|.+.. ..++...+.-.     ..+++
T Consensus       289 ~GnAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V-~~d~~avqrHr-----~tIle  357 (866)
T KOG1062|consen  289 AGNAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVV-QQDPTAVQRHR-----STILE  357 (866)
T ss_pred             chhHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhh-cCCcHHHHHHH-----HHHHH
Confidence            12356666666666554432     122345667778888888889999999998888 66555444322     46899


Q ss_pred             hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCC
Q 035507          469 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGL  547 (684)
Q Consensus       469 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~  547 (684)
                      +|++++..++..|+..+-.+...+.  .+.     ++..|+..|... +++.+...+..+..++. ..|+.+.      .
T Consensus       358 CL~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~  423 (866)
T KOG1062|consen  358 CLKDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------H  423 (866)
T ss_pred             HhcCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------H
Confidence            9999999999999999988875443  332     456888999888 99999999998888886 3344333      2


Q ss_pred             HHHHHHHhccCCHhHHHHHHHHHHHhhcCCC----HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGT----HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       548 l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~----~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      +..+.+.+...-.-++..+...+..+...+.    .....++...  +..-. ++....+.++.++.|+|..+-+.--..
T Consensus       424 idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a--~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~~  500 (866)
T KOG1062|consen  424 IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLA--LSEDT-LLDISQEPLLQVASWCIGEYGDLLLDG  500 (866)
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHH--Hhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhcC
Confidence            4556666666544444455544444444331    1112222221  11111 233455667888888887765321111


Q ss_pred             ccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHH
Q 035507          624 KNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD--NNEIHEKSVKIL  668 (684)
Q Consensus       624 ~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~--~~~i~~~a~~ii  668 (684)
                      .        .+.-.....+...+++|++++.+.  +..+...|...+
T Consensus       501 ~--------~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al  539 (866)
T KOG1062|consen  501 A--------NEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTAL  539 (866)
T ss_pred             c--------cccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            0        000123444566667777664332  233444444333

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.70  E-value=3.3e-06  Score=87.75  Aligned_cols=356  Identities=14%  Similarity=0.124  Sum_probs=217.3

Q ss_pred             ccHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc
Q 035507          249 EILPMMVAGVWS-------DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS  321 (684)
Q Consensus       249 ~~l~~lv~~L~s-------~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~  321 (684)
                      +.+|.++++|..       +|+..-..|..+|.-.+....   +.+.+. ++..+=+-+.+++ -.-++.|+.+++.+..
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm~  395 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVMH  395 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---hHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhhc
Confidence            478999999874       345666666666654433221   122221 3333334455666 4778899999999998


Q ss_pred             CCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC--CchHHHHHHHH
Q 035507          322 GTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH--TELSMLRIATT  399 (684)
Q Consensus       322 ~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~--~~~~v~~~a~~  399 (684)
                      +..+....-+-..++|.+...+.++..-+++.++|+++.|+.+-+   +.+...|.+.+.++.+...  ..+.+..+++|
T Consensus       396 gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw  472 (858)
T COG5215         396 GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSW  472 (858)
T ss_pred             CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHH
Confidence            765555555556789999999998888899999999999986542   2344445555544443222  23566779999


Q ss_pred             HHHHhccCCCCCC---hhhhhchHHHHHHHhc------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH-----
Q 035507          400 TLSNLCRGKPRPL---FDQVRPALPALAQLIH------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR-----  465 (684)
Q Consensus       400 ~L~nL~~~~~~~~---~~~~~~~l~~L~~lL~------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~-----  465 (684)
                      +.-|+...-+...   ........+.++.-|-      .++...+..+..+|+.+. ...++....+.. |+...     
T Consensus       473 ~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli-~~~~d~V~~~~a-~~~~~~~~kl  550 (858)
T COG5215         473 RKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLI-LICPDAVSDILA-GFYDYTSKKL  550 (858)
T ss_pred             HHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH-hhcchhHHHHHH-HHHHHHHHHH
Confidence            9999988763322   2222333333333221      345677888888888777 444433322221 22222     


Q ss_pred             ------HHHhcCCCC----cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507          466 ------LVELLGHPS----PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN  535 (684)
Q Consensus       466 ------L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  535 (684)
                            +-+.+...+    .+++..-+..|..+........+.+- ..++..++.+|++.....+-.....++++++..-
T Consensus       551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl  629 (858)
T COG5215         551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTAISALSTSL  629 (858)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence                  222222222    23445555555555543332222222 1356788888887733456667788899987754


Q ss_pred             hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--ChHHHHHHHHHH
Q 035507          536 REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA--DPKIVTVCLEGL  613 (684)
Q Consensus       536 ~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~--~~~v~~~al~~L  613 (684)
                      .+..... -..++|.|.+.|...+..+...|...++.++..-+.+...+  .......|++++.++  +.++.-.++..+
T Consensus       630 ~e~Fe~y-~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvF  706 (858)
T COG5215         630 EERFEQY-ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVF  706 (858)
T ss_pred             HHHHHHH-HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHH
Confidence            3443333 34589999999988899999999999999987555555444  444677888888764  344555555555


Q ss_pred             HHHHh
Q 035507          614 ENILK  618 (684)
Q Consensus       614 ~~il~  618 (684)
                      ..|.-
T Consensus       707 gDIAl  711 (858)
T COG5215         707 GDIAL  711 (858)
T ss_pred             HHHHH
Confidence            55543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.66  E-value=9.4e-06  Score=89.15  Aligned_cols=354  Identities=14%  Similarity=0.120  Sum_probs=218.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507          253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE  332 (684)
Q Consensus       253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~  332 (684)
                      .+++.+.+.|.+.|+.|+.-|.+=+..+.-..+.=-+..++..++++|++.+ +++|..|+.|++-+++.-++.+-.   
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le---   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE---   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH---
Confidence            6888899999999999998887766555433333344568899999999988 899999999999999744333322   


Q ss_pred             cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc----c-CCchHHHHHHHHHHHHhccC
Q 035507          333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN----E-HTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~----~-~~~~~v~~~a~~~L~nL~~~  407 (684)
                       ..+..|+.-+-++....|..+.-.|......-+..........+.+.+...+.    . .....++..++..+..+...
T Consensus        85 -~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   85 -TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             -HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence             22455665544555555554444444333322222222333344455554443    2 22233555555555444333


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHHHHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALWTVG  486 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~  486 (684)
                      ...--......++..++.-+.+....++..++.+|+.++...+.+..     .+++..|.+-|..+ ++.....-..+|+
T Consensus       164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-----~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-----VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            22222224456677777778888899999999999999922232222     24555666666443 3344444556677


Q ss_pred             HHHcCChhhHHHHHhcCChHHHHHHh---ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-------
Q 035507          487 NIVMGDDFQTQCIINHGAVPCLLALL---IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-------  556 (684)
Q Consensus       487 nl~~~~~~~~~~~i~~g~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-------  556 (684)
                      .++.........- -..++|.+.+..   +.. +.++|+.+..++..+....|..+...+. .++..+++.+.       
T Consensus       239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            7765433211111 124678888887   555 8899999999999887766555443322 13333333331       


Q ss_pred             ------------------------c---CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHH
Q 035507          557 ------------------------N---AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC  609 (684)
Q Consensus       557 ------------------------~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~a  609 (684)
                                              +   -++.||++|+.++..+... ..+....+.+. +-+.+++-++..+..|..-+
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHH
Confidence                                    0   0356899999999999873 45655555443 56777888888888888888


Q ss_pred             HHHHHHHHhccc
Q 035507          610 LEGLENILKVGE  621 (684)
Q Consensus       610 l~~L~~il~~~~  621 (684)
                      ..++..+++.-.
T Consensus       394 f~~yi~ll~qt~  405 (1233)
T KOG1824|consen  394 FHAYIALLKQTR  405 (1233)
T ss_pred             HHHHHHHHHcCC
Confidence            888888877543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.65  E-value=4.1e-06  Score=87.09  Aligned_cols=361  Identities=14%  Similarity=0.150  Sum_probs=214.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH-
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVV-  330 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i-  330 (684)
                      +..++.-+++|.++|.+|..+|.++.+-.....+...+.-+.....+.+++++ +++..+|+....-++...-+..... 
T Consensus       224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~  302 (858)
T COG5215         224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDK  302 (858)
T ss_pred             eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence            44556667889999999999999988765544554555556666677888888 7899998888877776321111100 


Q ss_pred             ---------------HhcCChHHHHHhcCC---------------------------------------------CChHH
Q 035507          331 ---------------IEHDAVPIFVKLLAS---------------------------------------------PSDDV  350 (684)
Q Consensus       331 ---------------~~~g~i~~Li~lL~~---------------------------------------------~~~~v  350 (684)
                                     .-.+++|.|+++|..                                             ++..-
T Consensus       303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~n  382 (858)
T COG5215         303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWAN  382 (858)
T ss_pred             hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhh
Confidence                           112467888888854                                             11223


Q ss_pred             HHHHHHHHHHhhCCCCC-CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC--CChhhhhchHHHHHHHh
Q 035507          351 REQAVWALGNVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR--PLFDQVRPALPALAQLI  427 (684)
Q Consensus       351 ~~~a~~~L~nLa~~~~~-~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL  427 (684)
                      ++.|+.++|.+-..+.. ++.. +-..+++.+...+ .++..-++..++|+++.++..-+.  .+.....+.+.....-+
T Consensus       383 reaavmAfGSvm~gp~~~~lT~-~V~qalp~i~n~m-~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl  460 (858)
T COG5215         383 REAAVMAFGSVMHGPCEDCLTK-IVPQALPGIENEM-SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGL  460 (858)
T ss_pred             HHHHHHHhhhhhcCccHHHHHh-hHHhhhHHHHHhc-ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhh
Confidence            45555555555433221 1111 1123455555555 455667888999999999887521  11111122222222221


Q ss_pred             cCCcHHHHHHHHHHHHhhccCCChHHH---HHHHHhchHHHHHHhc------CCCCcccHhHHHHHHHHHHcCChhhHHH
Q 035507          428 HSNDEQVLTDACWALFGLSGDRNNDKI---QAVIEAGVCGRLVELL------GHPSPSVLTPALWTVGNIVMGDDFQTQC  498 (684)
Q Consensus       428 ~~~d~~v~~~al~~L~~L~~~~~~~~~---~~~~~~g~l~~L~~lL------~~~~~~v~~~al~~L~nl~~~~~~~~~~  498 (684)
                       .+.+.+..+++|+.-++. +.-....   ..++. .+.+.++.-|      ...+...|..+..+|+.+....++....
T Consensus       461 -~D~p~~~~ncsw~~~nlv-~h~a~a~~~~~S~l~-~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~  537 (858)
T COG5215         461 -MDCPFRSINCSWRKENLV-DHIAKAVREVESFLA-KFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSD  537 (858)
T ss_pred             -hccchHHhhhHHHHHhHH-HhhhhhhccccchhH-HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHH
Confidence             356888999999999988 4322221   00111 1222222222      2345678888999999988776644333


Q ss_pred             HHhcCChHHHHHH-----------hccCC---ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCH-hHH
Q 035507          499 IINHGAVPCLLAL-----------LIHNH---KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF-DIK  563 (684)
Q Consensus       499 ~i~~g~l~~L~~l-----------L~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~-~v~  563 (684)
                      ++ .|+.....+-           +...+   ..+++..-+.+|..+.+..+..+..+-+ .++..++++|++.++ -+-
T Consensus       538 ~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~t~~~  615 (858)
T COG5215         538 IL-AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKPTTAF  615 (858)
T ss_pred             HH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCCchhh
Confidence            32 2333332222           22220   2356666777777776543333333333 378888999988744 455


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          564 EEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       564 ~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      .....++++++..-.+.+.++  -..+++.|...|+..|..+...+...+..+...-+.
T Consensus       616 ~dV~~aIsal~~sl~e~Fe~y--~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~  672 (858)
T COG5215         616 GDVYTAISALSTSLEERFEQY--ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT  672 (858)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence            667888998887544444444  345899999999888888888888888887765443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=5.8e-05  Score=83.63  Aligned_cols=330  Identities=16%  Similarity=0.182  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHHhcCCCCcHHH----HHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 035507          265 LQLEATTQFQKLLSIESMPIEE----VIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV  340 (684)
Q Consensus       265 ~~~~a~~~L~~l~s~~~~~~~~----ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li  340 (684)
                      -..-++.+|+++++..++....    ..--|..+.+..++....++.++..|+.++.-+.. +.++...++..|.+..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence            4556889999999887633222    22247788888888776658999999999987777 888999999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC---CCCChhhhh
Q 035507          341 KLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK---PRPLFDQVR  417 (684)
Q Consensus       341 ~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~---~~~~~~~~~  417 (684)
                      .+|.+ -+..|+.++..|..++....- .....+.|++..++..+-.+...+.+..++..+..+...+   |...+..+.
T Consensus      1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i-~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQI-GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred             HHHhc-ChHHHHHHHHHHHHHhcCcHH-HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence            99877 467889999999999877644 4556678899999988878888899999999999998776   333222222


Q ss_pred             ch-----------HHHHHHHhc--CCcHHH------HHHHHHHHHhhcc-------CCC------hHH------------
Q 035507          418 PA-----------LPALAQLIH--SNDEQV------LTDACWALFGLSG-------DRN------NDK------------  453 (684)
Q Consensus       418 ~~-----------l~~L~~lL~--~~d~~v------~~~al~~L~~L~~-------~~~------~~~------------  453 (684)
                      -.           -.+.++++.  +++|+.      +...-..+..+..       +++      +++            
T Consensus      1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred             hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence            22           233344443  222222      1111112222210       000      000            


Q ss_pred             ------HHHHH------------HhchHHHHHHhcCCCCcc--cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507          454 ------IQAVI------------EAGVCGRLVELLGHPSPS--VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI  513 (684)
Q Consensus       454 ------~~~~~------------~~g~l~~L~~lL~~~~~~--v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~  513 (684)
                            +..+.            -.|.++.+.+++..+.+.  ....-..++..+....+...+.+-..|-+|.++..+.
T Consensus      1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred             cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence                  00111            113445555666544332  2222223444455566666666767799999999998


Q ss_pred             cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH
Q 035507          514 HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKP  593 (684)
Q Consensus       514 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~  593 (684)
                      .. +..+-+.|..+|..+++.. -....+.....+..++..+.. ......-|+.+|..+......+...+....|.++.
T Consensus      2058 ~~-n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpy 2134 (2235)
T KOG1789|consen 2058 LQ-NTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPY 2134 (2235)
T ss_pred             hc-CCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHH
Confidence            77 6677789999999998753 445555555555556666543 34455688999999988666777778889999999


Q ss_pred             HHhhccC
Q 035507          594 LCDLLQC  600 (684)
Q Consensus       594 L~~lL~~  600 (684)
                      |..+|+.
T Consensus      2135 LL~LLd~ 2141 (2235)
T KOG1789|consen 2135 LLQLLDS 2141 (2235)
T ss_pred             HHHHhcc
Confidence            9999974

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=5.5e-06  Score=89.85  Aligned_cols=305  Identities=17%  Similarity=0.164  Sum_probs=184.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL  371 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~  371 (684)
                      +...+.+.+++.+ +-+|..|+-+..++-..   ..+.+.+.|.++.|-+++.+.++.|..+|+.+|..|....+..--.
T Consensus       122 ~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  122 LCDPLLKCLKDDD-PYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHhccCCC-hhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence            4566777777777 88888888888877763   3455667888999999998888899999999999998666531111


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN  451 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~  451 (684)
                      .+....+..++..++..    .--.-+..|-.++...|... .....++..+...+.+.+..+...+...+.++. ..-.
T Consensus       198 ~l~~~~~~~lL~al~ec----~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~-~~~~  271 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNEC----TEWGQIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLV-KYLK  271 (734)
T ss_pred             cccHHHHHHHHHHHHHh----hhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHH-HHHH
Confidence            11111223333333211    11122334455555554444 445667777888888888888888888888877 3222


Q ss_pred             HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh--------------------------cC--
Q 035507          452 DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN--------------------------HG--  503 (684)
Q Consensus       452 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~--------------------------~g--  503 (684)
                      . .....-..+-+.++.++.... .++..|++-+.-+....+.....-+.                          +.  
T Consensus       272 ~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~  349 (734)
T KOG1061|consen  272 Q-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLA  349 (734)
T ss_pred             H-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHH
Confidence            2 222333345667777777766 77888888777776655432111110                          01  


Q ss_pred             -ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH
Q 035507          504 -AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI  582 (684)
Q Consensus       504 -~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~  582 (684)
                       ++..+...-..- +.+..++|.+++++++..-.+.      .++++.|++++..+..-+..+++..+..+...... ..
T Consensus       350 qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~-~~  421 (734)
T KOG1061|consen  350 QVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN-KY  421 (734)
T ss_pred             HHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC-ch
Confidence             111222222222 5666777888888876532221      46777888888777666777777777777763311 11


Q ss_pred             HHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhccc
Q 035507          583 KYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       583 ~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~  621 (684)
                      +.     ++..++..+.+ .+|+.+....|++......-+
T Consensus       422 ~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~~i~  456 (734)
T KOG1061|consen  422 ES-----VVAILCENLDSLQEPEAKAALIWILGEYAERIE  456 (734)
T ss_pred             hh-----hhhhhcccccccCChHHHHHHHHHHhhhhhccC
Confidence            11     34444444443 577777777777777665543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.59  E-value=2.6e-06  Score=86.41  Aligned_cols=272  Identities=17%  Similarity=0.164  Sum_probs=188.0

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHh
Q 035507          284 IEEVIESGVVPRFVEFLMREDY-PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNV  361 (684)
Q Consensus       284 ~~~ii~~g~i~~Lv~lL~~~~~-~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nL  361 (684)
                      .+.+...|.+..|++++..++. ..++.+|+..|-.+..  .++++.++..| +..++.+.+. ..++.++.++.+|+++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3456677899999999998872 3579999999999886  67888888877 5555554443 5678899999999999


Q ss_pred             hCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC--CCChhhhhchHHHHHHHhcCCcHHHHHHHH
Q 035507          362 AADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQLIHSNDEQVLTDAC  439 (684)
Q Consensus       362 a~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al  439 (684)
                      ..++.+....+...|++..++-.+ ...++.+.+++..+|.|++-...  .........+-.-|..+-.+.|+-.+.+||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988778888999999988777 66779999999999999987762  222223344555566666778888999999


Q ss_pred             HHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh
Q 035507          440 WALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS  519 (684)
Q Consensus       440 ~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~  519 (684)
                      -+++-++  .+.+.-..+..+|.+..+-.++...++.-...   --...+.+..        ..-+..|+.+|++. .-+
T Consensus       329 lAV~vla--t~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~--------~d~LqRLvPlLdS~-R~E  394 (832)
T KOG3678|consen  329 LAVAVLA--TNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRG--------PDDLQRLVPLLDSN-RLE  394 (832)
T ss_pred             HHHhhhh--hhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCC--------hHHHHHhhhhhhcc-hhh
Confidence            9999998  44455555677787776666666655432111   1111122211        12477888999877 666


Q ss_pred             HHHHHHHHHHHHhc-CC-hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507          520 IKKEVSWIISNIAC-GN-REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA  573 (684)
Q Consensus       520 v~~~a~~~L~nl~~-~~-~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl  573 (684)
                      .+.-+++-++-=++ .. ......+-+-|.+..|-++.++.+..-.+.|..||.-+
T Consensus       395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  395 AQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             hhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence            66555555544333 11 11223344678899999998877655555555665544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=2.9e-05  Score=82.58  Aligned_cols=315  Identities=16%  Similarity=0.118  Sum_probs=207.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL  371 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~  371 (684)
                      ++..+.+-++.+. +.+|.....+|..+.........    ..+.+.+.+++..+...-+..+.+.++.+..+...  ..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence            5678888888888 89999988888776652111111    12467777888888888899999999999876643  34


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN  451 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~  451 (684)
                      ..+.+.+..+...+.+..+..-++.+..+.-..+..-...........+|.++.-+.+..+.++..+..+...+...-+.
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            45666777777777433333233334333333333333333334456666666666677888888877777655511122


Q ss_pred             HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH
Q 035507          452 DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNI  531 (684)
Q Consensus       452 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl  531 (684)
                      ...+     -++|.++.-+....+.....++..++.++...+.+..... ..++|.+.+.|.+. ++++|+++..++.++
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            2222     2344444444444788889999999999988886665444 47999999999999 999999999999998


Q ss_pred             hc--CChHHHHHHHH------------------------------hC----CHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          532 AC--GNREQIQAVID------------------------------AG----LIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       532 ~~--~~~~~~~~l~~------------------------------~g----~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      +.  .+++ ++.++.                              .-    ++|.|.+-+...+..+++.++..+.|++.
T Consensus       323 ~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  323 GSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             HHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            76  3433 333320                              01    23444444445577888999999999987


Q ss_pred             CC-CHHHH-HHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          576 RG-THDQI-KYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       576 ~~-~~~~~-~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      -- ++... +++-+  +++.+-..+....|+++..+..+|..+.+.....
T Consensus       402 LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  402 LVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             hhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            44 33332 33222  5677777777789999999999998888765443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=1.3e-05  Score=85.06  Aligned_cols=302  Identities=19%  Similarity=0.190  Sum_probs=198.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ..+.+.+.+.+.+...+..|+..+..+..+.  .+....+.+++..+...+.+..+...++.+..+...... +-.   .
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~-~Lg---~  208 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG-NLG---P  208 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH-hcC---C
Confidence            5667777777777888888888888876553  455666778888999988877633333323333332222 100   1


Q ss_pred             HHhcCC---hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          330 VIEHDA---VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       330 i~~~g~---i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      ..+.+.   +|.++.-..+....+|+.|..+.-.+...-+...    -.-.+++++.-+... .-..+..++..++.+..
T Consensus       209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~-kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEA-KWRTKMASLELLGAMAD  283 (569)
T ss_pred             CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHH
Confidence            223333   4444444556778899888888877754332210    011345555555333 44566788889998888


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG  486 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  486 (684)
                      ..|..-......++|.+.+.|.+..++++..+..++..++..-.+..++     .++|.|+..+.+++..+. .++..|+
T Consensus       284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-----~~ip~Lld~l~dp~~~~~-e~~~~L~  357 (569)
T KOG1242|consen  284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-----KIIPTLLDALADPSCYTP-ECLDSLG  357 (569)
T ss_pred             hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHhcCcccchH-HHHHhhc
Confidence            8776666777999999999999999999999999998888211222222     357889999988764433 2333333


Q ss_pred             HHHcCChhhHHHHHhcCC----hHHHHHHhccCCChhHHHHHHHHHHHHhcC--ChHHHHHHHHhCCHHHHHHHhccCCH
Q 035507          487 NIVMGDDFQTQCIINHGA----VPCLLALLIHNHKNSIKKEVSWIISNIACG--NREQIQAVIDAGLIGPLVNLLQNAEF  560 (684)
Q Consensus       487 nl~~~~~~~~~~~i~~g~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~g~l~~Li~ll~~~~~  560 (684)
                      .-+--      ..++...    +|.|..-+... +..+++.++.++.|++.-  ++..+..++.. ++|.+-..+.+..+
T Consensus       358 ~ttFV------~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~~P  429 (569)
T KOG1242|consen  358 ATTFV------AEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDAVP  429 (569)
T ss_pred             ceeee------eeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCCCh
Confidence            22111      1112223    45555555555 778899999999999973  45555555543 78888888888899


Q ss_pred             hHHHHHHHHHHHhhcC
Q 035507          561 DIKEEAAWAISNASSR  576 (684)
Q Consensus       561 ~v~~~a~~aL~nl~~~  576 (684)
                      ++|..++.||+.+...
T Consensus       430 EvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  430 EVRAVAARALGALLER  445 (569)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999988763

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=4.1e-05  Score=83.17  Aligned_cols=120  Identities=18%  Similarity=0.179  Sum_probs=81.0

Q ss_pred             HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507          463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV  542 (684)
Q Consensus       463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  542 (684)
                      +..|.++|.+++..++.-|+..|......++...+.     -=..++..|+++ |..+|+.|...+..+...  .++.. 
T Consensus       315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-  385 (866)
T KOG1062|consen  315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-  385 (866)
T ss_pred             HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-
Confidence            445556666666666666666666666555533221     124677888898 999999999888877653  23332 


Q ss_pred             HHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507          543 IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA  601 (684)
Q Consensus       543 ~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~  601 (684)
                          ++..|+..|...+++.+...+.-+..++....|+.+-+      ++.+...+...
T Consensus       386 ----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~a  434 (866)
T KOG1062|consen  386 ----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTA  434 (866)
T ss_pred             ----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhc
Confidence                46678888888899999999999999988766655443      44555555543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.56  E-value=3.8e-06  Score=92.95  Aligned_cols=272  Identities=18%  Similarity=0.210  Sum_probs=199.4

Q ss_pred             HHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc
Q 035507          265 LQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL  343 (684)
Q Consensus       265 ~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL  343 (684)
                      .|+.|...--...+.+. |+-+       +|..++.|-+.   --|..|+..|+....-.+-....-..-|+.|+++++|
T Consensus       452 eQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLL  521 (1387)
T KOG1517|consen  452 EQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLL  521 (1387)
T ss_pred             HHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHh
Confidence            35555544444444443 3333       56666766543   3466788888888876777677777789999999999


Q ss_pred             CCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC--CchHHHHHHHHHHHHhccCCCCCChhhh-hchH
Q 035507          344 ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH--TELSMLRIATTTLSNLCRGKPRPLFDQV-RPAL  420 (684)
Q Consensus       344 ~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~--~~~~v~~~a~~~L~nL~~~~~~~~~~~~-~~~l  420 (684)
                      +++-.+++-..+.+.+.|-..++.|+..+.+.++-...++.|..+  -+++-+..|+..|+.++++.+..+.... .+.+
T Consensus       522 QS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li  601 (1387)
T KOG1517|consen  522 QSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLI  601 (1387)
T ss_pred             ccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHH
Confidence            999999999888888888777788888888777777777777542  2457788899999999999754444443 6677


Q ss_pred             HHHHHHhcCC-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC----Chhh
Q 035507          421 PALAQLIHSN-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG----DDFQ  495 (684)
Q Consensus       421 ~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~~  495 (684)
                      ...+..+.++ .+-.+.++|-+|+.|- ...++..=.-.+.++.+.|..+|.++-+.||.+|+.+|+.+..+    .+++
T Consensus       602 ~iCle~lnd~~~pLLrQW~~icLG~LW-~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~  680 (1387)
T KOG1517|consen  602 GICLEHLNDDPEPLLRQWLCICLGRLW-EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ  680 (1387)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHh-hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence            7888888875 6888999999999999 66655555556668899999999999999999999999999875    2333


Q ss_pred             HHHH------------HhcCCh---HHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507          496 TQCI------------INHGAV---PCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI  548 (684)
Q Consensus       496 ~~~~------------i~~g~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l  548 (684)
                      ...+            ++.-+.   -.++.+++.. ++-+|.+.+-+|+.++.+...+...+.-....
T Consensus       681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~  747 (1387)
T KOG1517|consen  681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL  747 (1387)
T ss_pred             hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence            2222            222222   2566677777 89999999999999998776666655443333

>TIGR02270 conserved hypothetical protein

Probab=98.55  E-value=2e-05  Score=83.21  Aligned_cols=241  Identities=17%  Similarity=0.054  Sum_probs=171.4

Q ss_pred             cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          250 ILPMMVAGVW-SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       250 ~l~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      .++.++..+. ..++++...++.++..   .+.+.        ++..|++.|.+.+ +.++..++.+|+.+-.       
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~---~~~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~-------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLA---QEDAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG-------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhc---cCChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-------
Confidence            4677777774 4556776666555532   22111        3788899998887 7899999999986654       


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                          .+..+.|+.+|.++++.++..++.+++..-.            ...+.+...| ++.+..++..++.+|+.+... 
T Consensus       116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~-  177 (410)
T TIGR02270       116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR-  177 (410)
T ss_pred             ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc-
Confidence                3567888999999999999888888877321            1346777777 688999999999999988765 


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                               ..++.|...+.+.++.|+..|++++..+. .  .         ..+..+..+...........+..+++..
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG-~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAG-S--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC-C--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                     45667778889999999999999998876 2  2         1234445444444444444444444333


Q ss_pred             HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507          489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW  568 (684)
Q Consensus       489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~  568 (684)
                        +.+         .+++.|..++.++ .  ++..++++++.+...           ..++.|+..+.+.  .++..|.+
T Consensus       237 --~~~---------~a~~~L~~ll~d~-~--vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA-A--TRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh-h--hHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHHH
Confidence              222         3677888888776 3  899999999987543           2688888888643  49999999


Q ss_pred             HHHHhhc
Q 035507          569 AISNASS  575 (684)
Q Consensus       569 aL~nl~~  575 (684)
                      ++..++-
T Consensus       290 A~~~ItG  296 (410)
T TIGR02270       290 AFSLITG  296 (410)
T ss_pred             HHHHhhC
Confidence            9999975

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.54  E-value=2.9e-06  Score=86.06  Aligned_cols=269  Identities=14%  Similarity=0.078  Sum_probs=180.2

Q ss_pred             hccHHHHHHHhcCCCHHH--HHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507          248 LEILPMMVAGVWSDDNNL--QLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~--~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      -+.+..+++++++.+.+.  +.+|++.|..++...  +.+.++..| +..++.+-+....++.+...+.+|.++..++.+
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae--N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE--NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh--hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            367899999999988655  889999999988764  666676666 444444444444478999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      ....+++.|++..++-.....++.+.++|+.+|+|++-+. ...+..+.+..+-+-|..+- .+.|.-++.+||-+...+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            9999999999999999888889999999999999999554 23344455555544444443 556777788999999999


Q ss_pred             ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507          405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT  484 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  484 (684)
                      +..+........++.+..+-.++.+-||..-..-   -..-+ ++        ....-+++|+.+|++..-..+..++.-
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD---~hd~a-QG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~  402 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFARD---AHDYA-QG--------RGPDDLQRLVPLLDSNRLEAQCIGAFY  402 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhhh---hhhhh-cc--------CChHHHHHhhhhhhcchhhhhhhHHHH
Confidence            8887444444445555555555555554321110   00001 00        011357888999986654444433333


Q ss_pred             HHHHHcCC--hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          485 VGNIVMGD--DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       485 L~nl~~~~--~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      +..=+...  ....+.+-+-|.+..|-.+..++ +....+.|..+|.-|..
T Consensus       403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence            32222211  12234455678999999999877 66556666666666644

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=0.00013  Score=71.36  Aligned_cols=339  Identities=17%  Similarity=0.179  Sum_probs=231.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC----CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES----MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~----~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      ..|.+-..|..++..++.-|+..+..++...+    ..+..++.+|+++.++.++..++ .++...|...+..|+. .+.
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpa  160 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPA  160 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHH
Confidence            34666677778888888889988888887665    23445678999999999998888 7999999999999998 677


Q ss_pred             hHHHHHhcCChHHHH--HhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507          326 NTKVVIEHDAVPIFV--KLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSN  403 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li--~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n  403 (684)
                      ....+.+......+-  .+-...+.-+|..+...+-.+..-++.....+-..|.+..|..-+....|.-++.+++.....
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            777777776554433  232334566777888888888888877677777889999988888666788888888888888


Q ss_pred             hccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhc-------hHHHHHHhcCCCC
Q 035507          404 LCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG-------VCGRLVELLGHPS  474 (684)
Q Consensus       404 L~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g-------~l~~L~~lL~~~~  474 (684)
                      |........+....+++..+..++.  +.+|--...++...+.+.  +. ..+..+.+..       ++...++.+...+
T Consensus       241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff--gk-eaimdvseeaicealiiaidgsfEmiEmnD  317 (524)
T KOG4413|consen  241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF--GK-EAIMDVSEEAICEALIIAIDGSFEMIEMND  317 (524)
T ss_pred             HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh--cc-hHHhhcCHHHHHHHHHHHHHhhHHhhhcCC
Confidence            8877666666677888888888886  445666666666666655  21 1121112222       3344556667789


Q ss_pred             cccHhHHHHHHHHHHcCChhhHHHHHhcCC--hHHHHH-HhccCCChhHHHHHHHHHHHHhcC---ChHHHH--------
Q 035507          475 PSVLTPALWTVGNIVMGDDFQTQCIINHGA--VPCLLA-LLIHNHKNSIKKEVSWIISNIACG---NREQIQ--------  540 (684)
Q Consensus       475 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~--l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~--------  540 (684)
                      ++.+..|..++|.+.+... ..+.+...|-  ...++. ..... ...-+..+..+|.+|+..   .++++.        
T Consensus       318 pdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerl  395 (524)
T KOG4413|consen  318 PDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERL  395 (524)
T ss_pred             chHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHH
Confidence            9999999999999976554 5555554442  223322 22222 333456777888888752   222211        


Q ss_pred             --HHHHh-------CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHH-HHHCCChHHHHhh
Q 035507          541 --AVIDA-------GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKY-LVTEGCIKPLCDL  597 (684)
Q Consensus       541 --~l~~~-------g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-l~~~g~l~~L~~l  597 (684)
                        .++++       .-...+..+++.+.++++..|...+..++.  .|-..+. +...++++...+.
T Consensus       396 rclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa--qPWalkeifakeefieiVtDa  460 (524)
T KOG4413|consen  396 RCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA--QPWALKEIFAKEEFIEIVTDA  460 (524)
T ss_pred             HHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc--CcHHHHHHhcCccceeeeccc
Confidence              11111       235566777888899999999999999986  3433333 3456666655543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=2.9e-05  Score=84.44  Aligned_cols=342  Identities=17%  Similarity=0.175  Sum_probs=233.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ...+.+++.....|.+.+.-.-..+.+-+...+..     ..++++.++.=..+++ +.+|..|++.++.+.-  +....
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e  120 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE  120 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH
Confidence            46799999999999888777777787777665421     1245666666666677 8999988888776654  11111


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                           -+...+...+++.++-+|..|+.+..++-..++   +.+...|.+..|-.++ .+.++.+..+|+.+|..+....
T Consensus       121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             -----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhC
Confidence                 346788899999999999999999999876653   4667788888888888 5889999999999999999887


Q ss_pred             CC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          409 PR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       409 ~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      +. .........+..++..+..-++.-+...+.++.+-. ..++...+     .++.++...|.+.++.+...+...+..
T Consensus       192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~-p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV-PKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC-CCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            53 333344555566666666666667777777776655 33332222     357888899999999999999999988


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHH-------------------------H
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQA-------------------------V  542 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-------------------------l  542 (684)
                      +....+.....+ -..+-+.++.++.+. + +++..|..-+.-+....+.....                         +
T Consensus       266 ~~~~~~~~~~~~-~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNELL-FKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHHHH-HHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            876555422222 235667777777666 3 55544433333332222221110                         0


Q ss_pred             H-HhC---CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507          543 I-DAG---LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       543 ~-~~g---~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~  618 (684)
                      . +.+   ++.-+.......|.+..++|.+|+++++.....       .++++..|.+++......+++.+...++.+++
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            0 111   233333333455888999999999999873321       26789999999998777788888888888888


Q ss_pred             ccccc
Q 035507          619 VGEAE  623 (684)
Q Consensus       619 ~~~~~  623 (684)
                      .-++.
T Consensus       416 kyP~~  420 (734)
T KOG1061|consen  416 KYPNK  420 (734)
T ss_pred             cCCCc
Confidence            76543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=6.6e-06  Score=91.13  Aligned_cols=256  Identities=17%  Similarity=0.208  Sum_probs=199.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      +.+|.+++.|-|  .--++.|+..|.+.+...+-.+..-..-|+.|..+++|+++. .+++..-+.+-+.|..-++.+..
T Consensus       472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             HhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHH
Confidence            456666766655  245778888888888887777777788899999999999988 89999999999999998899998


Q ss_pred             HHHhcCChHHHHHhcCC-C--ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507          329 VVIEHDAVPIFVKLLAS-P--SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC  405 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~-~--~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~  405 (684)
                      .+++.++-.++++.|.. +  +++-|..|+.+|+.++..-+..+....+.+.+...+..++.++.+-++..++-+|+.|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            89988888888888876 2  45788899999999998877777788888888888888866556777888999999998


Q ss_pred             cCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC----ChHHHHHH------------HHhchH---HH
Q 035507          406 RGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR----NNDKIQAV------------IEAGVC---GR  465 (684)
Q Consensus       406 ~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~----~~~~~~~~------------~~~g~l---~~  465 (684)
                      .+.... -......+...|..+|.++-++|+.+|+.||+.+. .+    .+++...+            ++.-+.   ..
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl-~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFL-SNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHh-cccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            876433 33344778889999999999999999999999888 54    23333222            121122   25


Q ss_pred             HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHH
Q 035507          466 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL  508 (684)
Q Consensus       466 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L  508 (684)
                      ++.++++..+-++.+..-+++.++.+...+...+.-....+..
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~~~  750 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLPES  750 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhcccch
Confidence            7777888899999999999999998887766655544444433

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.46  E-value=9.5e-05  Score=81.57  Aligned_cols=407  Identities=16%  Similarity=0.186  Sum_probs=241.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHH-------------------------------------HHcC
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEV-------------------------------------IESG  291 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~i-------------------------------------i~~g  291 (684)
                      .+..+++.|...++++|..|++++.-+.+.-+ ...+.+                                     ....
T Consensus        48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t  127 (1233)
T KOG1824|consen   48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT  127 (1233)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence            56778888888888888888888774443322 111111                                     1122


Q ss_pred             CH----HHHHHhhcC-CCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC
Q 035507          292 VV----PRFVEFLMR-EDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS  366 (684)
Q Consensus       292 ~i----~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~  366 (684)
                      +.    |.|.+.+.. ++...++..++..+....+.-...... ...+.+..++..+.++...+|..|+.+|+.++...+
T Consensus       128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~  206 (1233)
T KOG1824|consen  128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN  206 (1233)
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence            22    333333322 222347777777666555411111111 233556667777788889999999999999997654


Q ss_pred             CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh---cCCcHHHHHHHHHHHH
Q 035507          367 GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI---HSNDEQVLTDACWALF  443 (684)
Q Consensus       367 ~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL---~~~d~~v~~~al~~L~  443 (684)
                      .  +  .-.+.+..++.-|.+.......+..+.+|+.+|+....+.-.....++|.+.+..   ..+|++.++.++.++.
T Consensus       207 ~--~--ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale  282 (1233)
T KOG1824|consen  207 R--D--LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE  282 (1233)
T ss_pred             H--H--HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            3  2  2234577778888777778888889999999999875555566788899999988   6788999999999998


Q ss_pred             hhccCCChHHHHHHHHhchHHHHHHhcCCC----------------------------------CcccHhHHHHHHHHHH
Q 035507          444 GLSGDRNNDKIQAVIEAGVCGRLVELLGHP----------------------------------SPSVLTPALWTVGNIV  489 (684)
Q Consensus       444 ~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~----------------------------------~~~v~~~al~~L~nl~  489 (684)
                      .+. ...+..+-.... .++..+++.+..+                                  ++.+|.+|+.++..+.
T Consensus       283 ~fl-~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~I  360 (1233)
T KOG1824|consen  283 SFL-RRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVI  360 (1233)
T ss_pred             HHH-HhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHH
Confidence            777 444444333222 2444455544320                                  1578999999988876


Q ss_pred             cCChhhHHHH------------------HhcCChHHHHHHhccCC-------C-------------hhHHHHHHHHHHHH
Q 035507          490 MGDDFQTQCI------------------INHGAVPCLLALLIHNH-------K-------------NSIKKEVSWIISNI  531 (684)
Q Consensus       490 ~~~~~~~~~~------------------i~~g~l~~L~~lL~~~~-------~-------------~~v~~~a~~~L~nl  531 (684)
                      ....+....+                  +...++..++.+|.+..       +             ..++...-.++..|
T Consensus       361 sSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai  440 (1233)
T KOG1824|consen  361 SSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAI  440 (1233)
T ss_pred             hccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHH
Confidence            5442221111                  11233444444442210       0             01111222222222


Q ss_pred             h----------------------cCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 035507          532 A----------------------CGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVT  587 (684)
Q Consensus       532 ~----------------------~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  587 (684)
                      .                      ...|.....- ...++|.++..+.+.  ....+..++..+.++.....++...-+..
T Consensus       441 ~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~-~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~  519 (1233)
T KOG1824|consen  441 QKQLREKSVKTRQGCFLLLTELINVLPGALAQH-IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLS  519 (1233)
T ss_pred             HHHHhhccccchhhHHHHHHHHHHhCcchhhhc-ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchh
Confidence            1                      1111100000 012467777777654  56678888888888887666665443322


Q ss_pred             CCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHH
Q 035507          588 EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNEIHEKSVK  666 (684)
Q Consensus       588 ~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~i~~~a~~  666 (684)
                       ...+++.....++-+++-.-++-....++++-.......  ....++|...+-.+    .+..| ....+.+|+++|..
T Consensus       520 -~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~--~~d~~~~v~~m~~~----tl~rL~a~d~DqeVkeraIs  592 (1233)
T KOG1824|consen  520 -ALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPS--SFDASPYVKTMYDC----TLQRLKATDSDQEVKERAIS  592 (1233)
T ss_pred             -hhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCc--cCCCChhHHHHHHH----HHHHHhcccccHHHHHHHHH
Confidence             256666677778888888888888888888765543210  12244555555422    34445 36678999999998


Q ss_pred             HHHHh
Q 035507          667 ILETY  671 (684)
Q Consensus       667 ii~~~  671 (684)
                      .+..|
T Consensus       593 cmgq~  597 (1233)
T KOG1824|consen  593 CMGQI  597 (1233)
T ss_pred             HHHHH
Confidence            87766

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.45  E-value=5.8e-05  Score=79.38  Aligned_cols=299  Identities=14%  Similarity=0.099  Sum_probs=192.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch--hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE--NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR  369 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~--~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r  369 (684)
                      ++...+.+|++.. |.+|..|+...+.++..-..  ....+...|.  .|.+.|....+++.-..+.|+..|.....--.
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            4566778888888 89999999988887752111  1222333342  34556677888888877777777753321100


Q ss_pred             hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCC-hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccC
Q 035507          370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL-FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGD  448 (684)
Q Consensus       370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~  448 (684)
                      -.-.-.|+++.|...| .+....+..+.+..+..+|...|... ......+.=-|+.+|.+-+.+++.+|..++++++ .
T Consensus       682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is-~  759 (975)
T COG5181         682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS-R  759 (975)
T ss_pred             cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH-h
Confidence            0112356788888888 67778889999999999998875422 2222444445778888899999999999999998 2


Q ss_pred             CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507          449 RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII  528 (684)
Q Consensus       449 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L  528 (684)
                      .       +--..++..|+.-|+..+-..|....-+++-.+..+.       -..++|.|+.=...+ +..|+.-...++
T Consensus       760 a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 A-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             h-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            2       1122355566666655554445444445554443332       123566666666666 777888777777


Q ss_pred             HHHhcCC-hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc-------cC
Q 035507          529 SNIACGN-REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL-------QC  600 (684)
Q Consensus       529 ~nl~~~~-~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL-------~~  600 (684)
                      +.+.... .....++.  -+.|.|-+.|.+.|+.-|..|...+.+++.++.        -.|..+..+.+|       -.
T Consensus       825 ~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~--------gtg~eda~IHLlNllwpNIle  894 (975)
T COG5181         825 CFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP--------GTGDEDAAIHLLNLLWPNILE  894 (975)
T ss_pred             HHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC--------CcccHHHHHHHHHHhhhhccC
Confidence            7765521 12233332  367888889999999999999999999987532        112222333332       35


Q ss_pred             CChHHHHHHHHHHHHHHhcc
Q 035507          601 ADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       601 ~~~~v~~~al~~L~~il~~~  620 (684)
                      +.|.++....+++..+..+-
T Consensus       895 ~sPhvi~~~~Eg~e~~~~~l  914 (975)
T COG5181         895 PSPHVIQSFDEGMESFATVL  914 (975)
T ss_pred             CCcHHHHHHHHHHHHHHHHh
Confidence            67888888888888776653

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=3.1e-05  Score=75.19  Aligned_cols=271  Identities=15%  Similarity=0.198  Sum_probs=172.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVI--ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii--~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      +..++.++.+.+|.++..|+..+..+... .  .+.+.  +.-.++.+.+++.... +  -..|+.+|.|++. +...++
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~--~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G--LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRK   77 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-c--hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHH
Confidence            46789999999999999999988886655 1  11111  2235778889988776 4  6679999999998 777888


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh------cCCHHHHHHHhccCCc-hHHHHHHHHHH
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS------EGALIPLLAQLNEHTE-LSMLRIATTTL  401 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~------~g~l~~Ll~~L~~~~~-~~v~~~a~~~L  401 (684)
                      .+++. .+..++..+.++...+.+..+..|.|++.+...++.....      .|.+.........+.+ ..-..+.+..+
T Consensus        78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            88876 7888888888887788889999999999887665443322      2333333333322222 12345667778


Q ss_pred             HHhccCCCCCChhhhhchHH--HHHHHhcCCcHHHH-HHHHHHHHhhccCCChHHHHHHHHh--chHHHHH---------
Q 035507          402 SNLCRGKPRPLFDQVRPALP--ALAQLIHSNDEQVL-TDACWALFGLSGDRNNDKIQAVIEA--GVCGRLV---------  467 (684)
Q Consensus       402 ~nL~~~~~~~~~~~~~~~l~--~L~~lL~~~d~~v~-~~al~~L~~L~~~~~~~~~~~~~~~--g~l~~L~---------  467 (684)
                      +|+++....+........+|  .+..+-. .+..++ ...+.+|.|.||+.  .....+++.  .++|.++         
T Consensus       157 ~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  157 ANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCcccc
Confidence            88887764444433333333  2333333 444443 45677888877332  222222222  2333322         


Q ss_pred             ------------HhcC-----CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507          468 ------------ELLG-----HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN  530 (684)
Q Consensus       468 ------------~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  530 (684)
                                  ++|.     .+++.++..-+.+|.-++.... .++.+.+.|+.|.+-.+-....++++++.+-.....
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                        2221     1457899999999988886544 777888888888887776665477777655555554


Q ss_pred             Hhc
Q 035507          531 IAC  533 (684)
Q Consensus       531 l~~  533 (684)
                      +..
T Consensus       313 Lv~  315 (353)
T KOG2973|consen  313 LVR  315 (353)
T ss_pred             HHh
Confidence            444

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.00061  Score=73.39  Aligned_cols=257  Identities=14%  Similarity=0.150  Sum_probs=178.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL  371 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~  371 (684)
                      +-+-++.+|++.. |-+|..|+.++..+.-..|+..+     ..+|.|.+-|.++++.|+..|+..++.||+.+|..  .
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence            4566778888888 89999999999999885444332     46899999999999999999999999999888763  1


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCc-HHHHHHHHHHHH--hhccC
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND-EQVLTDACWALF--GLSGD  448 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~al~~L~--~L~~~  448 (684)
                      +   ..-|.+..+|.++.+.=+....+-..++|+--.|.    ....++|.+..++++.. -.+...++.++.  +++ .
T Consensus       217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s-~  288 (877)
T KOG1059|consen  217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMS-S  288 (877)
T ss_pred             c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc-c
Confidence            1   12345566665556655666666666777655432    33567888888888764 344555555542  444 3


Q ss_pred             CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507          449 RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII  528 (684)
Q Consensus       449 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L  528 (684)
                      +.++....+.  =.++.|-.++.+.++.++.-++-+++.++..++...++-     -+.++.+|.+. |+.+|..|...+
T Consensus       289 g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl  360 (877)
T KOG1059|consen  289 GMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLL  360 (877)
T ss_pred             CCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHH
Confidence            3222222111  146778888899999999999999999998777655543     45788999998 999999999998


Q ss_pred             HHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCH
Q 035507          529 SNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTH  579 (684)
Q Consensus       529 ~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~  579 (684)
                      .-+...  +++..     ++..|+..+... ....+.+.+.-+..+++..+.
T Consensus       361 ~gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY  405 (877)
T KOG1059|consen  361 YGMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY  405 (877)
T ss_pred             HHHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence            888653  33333     344455544444 347777777777777764433

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=0.00021  Score=69.55  Aligned_cols=273  Identities=15%  Similarity=0.168  Sum_probs=179.4

Q ss_pred             HHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507          379 IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVI  458 (684)
Q Consensus       379 ~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~  458 (684)
                      ..++.++ .+.++.++..|+.-+..++......-.......++.+.+++...++  ...|..++.|++  ......+.++
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnls--q~~~l~~~ll   80 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLS--QKEELRKKLL   80 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHH--hhHHHHHHHH
Confidence            4566666 7788899999998888888773222223346678889999987777  788999999999  4555666666


Q ss_pred             HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHH------hcCChHHHHHHhccCCChhH-HHHHHHHHHHH
Q 035507          459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII------NHGAVPCLLALLIHNHKNSI-KKEVSWIISNI  531 (684)
Q Consensus       459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i------~~g~l~~L~~lL~~~~~~~v-~~~a~~~L~nl  531 (684)
                      +. ++..++..+.++.......++..+.|++...+.......      +.|.+.........+.+... -...+.+++|+
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            66 888899999998888999999999999987764443332      24566666666655423111 23456677777


Q ss_pred             hcCChHHHHHHHHhCCHH--HHHHHhccCCHhHHHH-HHHHHHHhhcCCCHHHHHHHHHC--CChHHH------------
Q 035507          532 ACGNREQIQAVIDAGLIG--PLVNLLQNAEFDIKEE-AAWAISNASSRGTHDQIKYLVTE--GCIKPL------------  594 (684)
Q Consensus       532 ~~~~~~~~~~l~~~g~l~--~Li~ll~~~~~~v~~~-a~~aL~nl~~~~~~~~~~~l~~~--g~l~~L------------  594 (684)
                      +.. ...+..+.+...+|  .+.. +++.+..+|+. .+..|.|++-..  ..-..+...  .+++.+            
T Consensus       160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence            653 34555555544322  2333 23356666655 557777766421  111122211  111111            


Q ss_pred             ---------Hhhcc-----CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHH
Q 035507          595 ---------CDLLQ-----CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNE  659 (684)
Q Consensus       595 ---------~~lL~-----~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~  659 (684)
                               .+++.     .+|+.++...+++|..++...              .-.+.++.-|+...+..+ ...++++
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~--------------~GRe~lR~kgvYpilRElhk~e~ded  301 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR--------------AGREVLRSKGVYPILRELHKWEEDED  301 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh--------------HhHHHHHhcCchHHHHHHhcCCCcHH
Confidence                     13332     467899999999998777543              245788999999999998 4567899


Q ss_pred             HHHHHHHHHHHhcCCC
Q 035507          660 IHEKSVKILETYWCGR  675 (684)
Q Consensus       660 i~~~a~~ii~~~f~~e  675 (684)
                      +.+.+..+.+-...+|
T Consensus       302 ~~~ace~vvq~Lv~~e  317 (353)
T KOG2973|consen  302 IREACEQVVQMLVRLE  317 (353)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9988888887666633

>PF05536 Neurochondrin: Neurochondrin

Probab=98.35  E-value=0.00028  Score=77.74  Aligned_cols=194  Identities=18%  Similarity=0.130  Sum_probs=137.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC---cHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESM---PIEEVIESGVVPRFVEFLMRED------YPQLQFQAAWALTNI  319 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~---~~~~ii~~g~i~~Lv~lL~~~~------~~~v~~~A~~~L~~l  319 (684)
                      ..+...+++|++.+.+.++.|+..+.+++...+.   ..+.+.++=+.+.+-++|.++.      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4678999999999978889999999999887652   2345777767788889998722      256778899999999


Q ss_pred             hcCCchhHHHHHhcCChHHHHHhcCCCCh-HHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHH
Q 035507          320 ASGTSENTKVVIEHDAVPIFVKLLASPSD-DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIAT  398 (684)
Q Consensus       320 ~~~~~~~~~~i~~~g~i~~Li~lL~~~~~-~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~  398 (684)
                      +. .++....---.+-||.|++.+.+.+. .+...|..+|..++... ..++.+.+.|+++.|...+.+  .......++
T Consensus        85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al  160 (543)
T PF05536_consen   85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN--QSFQMEIAL  160 (543)
T ss_pred             cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence            98 55543222222569999999988666 99999999999999555 457888999999999999855  344566677


Q ss_pred             HHHHHhccCCCC----CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          399 TTLSNLCRGKPR----PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       399 ~~L~nL~~~~~~----~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      .++.+++.....    ........+++.+...+..........+|..|..+.
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L  212 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFL  212 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhc
Confidence            777776665421    112222345555555555555555666666666555

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=4.1e-06  Score=86.57  Aligned_cols=304  Identities=15%  Similarity=0.100  Sum_probs=194.1

Q ss_pred             HHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCc
Q 035507          353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSND  431 (684)
Q Consensus       353 ~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d  431 (684)
                      +++.+|..+++.-...|.-+.+..+.++|++.| +.++..+...++..+.|+.-.- +-.......+++..++.++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            344455566555445566677788899999999 6666666666777777776554 44455556899999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCChHH--HHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh---hHHHHHhc----
Q 035507          432 EQVLTDACWALFGLSGDRNNDK--IQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF---QTQCIINH----  502 (684)
Q Consensus       432 ~~v~~~al~~L~~L~~~~~~~~--~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~~i~~----  502 (684)
                      ...+....|.+.++. .+.+..  .+ .+..-.+..++.+..++...++...+.++.|+++.+..   ..+..+..    
T Consensus       487 daLqans~wvlrHlm-yncq~~ekf~-~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~  564 (743)
T COG5369         487 DALQANSEWVLRHLM-YNCQKNEKFK-FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR  564 (743)
T ss_pred             hhhhhcchhhhhhhh-hcCcchhhhh-hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence            999999999999998 444333  34 34444578999999999999999999999999885432   11111111    


Q ss_pred             CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH-hCCHHHHHHHhccC-----------CHhHHHHHHHHH
Q 035507          503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID-AGLIGPLVNLLQNA-----------EFDIKEEAAWAI  570 (684)
Q Consensus       503 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~-----------~~~v~~~a~~aL  570 (684)
                      -....+++.+... ++..-.+.+..|.++++.+..-.+.+.. ..++..+..+|...           ...+-..-....
T Consensus       565 ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~  643 (743)
T COG5369         565 YLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI  643 (743)
T ss_pred             HHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence            1456677777777 6766677799999998866454444443 33444444444211           111111111222


Q ss_pred             HHhhcCCCHHHHHHHHHCCCh--HHHHhhc---cCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhch
Q 035507          571 SNASSRGTHDQIKYLVTEGCI--KPLCDLL---QCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEG  645 (684)
Q Consensus       571 ~nl~~~~~~~~~~~l~~~g~l--~~L~~lL---~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~  645 (684)
                      .++....  +..+    .+..  +++-.+=   ..++.++.....|.+.++....+.....    +.....++.+.+.|.
T Consensus       644 v~l~e~~--d~f~----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~  713 (743)
T COG5369         644 VNLSENS--DKFK----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGI  713 (743)
T ss_pred             ecccccc--cccc----cceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccH
Confidence            2222210  1111    1111  1221111   1234557777777777755443322211    234567888999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHH
Q 035507          646 LEKIENLQSHDNNEIHEKSVKILET  670 (684)
Q Consensus       646 ~~~L~~L~~~~~~~i~~~a~~ii~~  670 (684)
                      -+-+..+|.|+++.|++++...+..
T Consensus       714 ~e~l~k~q~~~Sl~vrek~~taL~~  738 (743)
T COG5369         714 REWLVKIQAKDSLIVREKIGTALEN  738 (743)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHh
Confidence            9999999999999999999999864

>TIGR02270 conserved hypothetical protein

Probab=98.33  E-value=0.0001  Score=77.94  Aligned_cols=245  Identities=19%  Similarity=0.076  Sum_probs=174.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      ..++.++..|.....+.++..|++++.....  +         .++..|+..|.++++.++..++.+|+.+-        
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------  114 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--------  114 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence            3578888888544447888877766643222  1         23899999999999999999999999752        


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN  450 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~  450 (684)
                         .......|+..+ .+.++.++..++.++...-           ....+.+..++.+.++.++..++.+++.+. .. 
T Consensus       115 ---~~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-~~-  177 (410)
T TIGR02270       115 ---GRQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELP-RR-  177 (410)
T ss_pred             ---chHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhc-cc-
Confidence               122466778888 7778889888887776622           123567888899999999999999999987 32 


Q ss_pred             hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507          451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN  530 (684)
Q Consensus       451 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  530 (684)
                                ..++.|...+.+.++.+|..|+..++.+..  +.         .++.+....... ....+..+..++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~-g~~~~~~l~~~lal  235 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLE-GGPHRQRLLVLLAV  235 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhcc-CccHHHHHHHHHHh
Confidence                      346678888999999999999999977632  31         334555544444 34444444444443


Q ss_pred             HhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHH
Q 035507          531 IACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCL  610 (684)
Q Consensus       531 l~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al  610 (684)
                      .  +.+         ..++.|..++.+..  ++..++++++.+-.   +.         .++.|...+...  .+...+-
T Consensus       236 ~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---p~---------av~~L~~~l~d~--~~aR~A~  288 (410)
T TIGR02270       236 A--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD---VE---------AAPWCLEAMREP--PWARLAG  288 (410)
T ss_pred             C--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC---cc---------hHHHHHHHhcCc--HHHHHHH
Confidence            3  222         36778888887644  89999999997743   22         567777777643  4899999


Q ss_pred             HHHHHHHhcc
Q 035507          611 EGLENILKVG  620 (684)
Q Consensus       611 ~~L~~il~~~  620 (684)
                      +++..|....
T Consensus       289 eA~~~ItG~~  298 (410)
T TIGR02270       289 EAFSLITGMD  298 (410)
T ss_pred             HHHHHhhCCC
Confidence            9999998754

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.32  E-value=0.00013  Score=81.84  Aligned_cols=382  Identities=14%  Similarity=0.126  Sum_probs=220.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.+..+...+...+++.|...+..+...-+...  -....+.+.+++...+.+ ..++.........+...   ....
T Consensus       277 v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~~---~~~~  350 (759)
T KOG0211|consen  277 VLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSSA---VGPS  350 (759)
T ss_pred             ccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHHH---hccc
Confidence            34444444444444555555555555443322111  122234455555555544 34444333333333320   0001


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      ......++....+++....+.+..++.-...++.... .++..+....+++.+-.+. .+.+..++...+..+..+.--.
T Consensus       351 ~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~  429 (759)
T KOG0211|consen  351 ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPIL  429 (759)
T ss_pred             cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccC
Confidence            1111234445555555555555444444444442111 1122233333333333333 5556666665555444443322


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                      +  ....+....|.+...+.+.++.++.+..+.+..+- ...+..-........+|.+..+-.+....++.+.++.+--+
T Consensus       430 ~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~-~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~l  506 (759)
T KOG0211|consen  430 P--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLE-EVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQL  506 (759)
T ss_pred             C--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHH-hccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHH
Confidence            2  33445778888888999999999999998887665 33333333344445788888888777888888888888887


Q ss_pred             HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507          489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW  568 (684)
Q Consensus       489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~  568 (684)
                      +....   ..+.+...-+.+...+.+. ...+++.|+..+.-++.....   .......+|.++....+++...|...+.
T Consensus       507 a~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~  579 (759)
T KOG0211|consen  507 ALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS---EWARLEEIPKLLAMDLQDNYLVRMTTLF  579 (759)
T ss_pred             HHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc---chhHHHhhHHHHHHhcCcccchhhHHHH
Confidence            75332   2344444556666667666 778999999988888752211   1112246788888777777888888888


Q ss_pred             HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHH
Q 035507          569 AISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEK  648 (684)
Q Consensus       569 aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~  648 (684)
                      ++..++...+.+.    .....++.+.++..++.+.|+..+++.+..+...-...                ..+......
T Consensus       580 si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----------------~~~~~v~pl  639 (759)
T KOG0211|consen  580 SIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----------------VRDEEVLPL  639 (759)
T ss_pred             HHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----------------HHHHHHHHH
Confidence            8887765433332    33447889999999999999999999999998764332                223344566


Q ss_pred             HHHhhcCCCHHHHHHHHHHH
Q 035507          649 IENLQSHDNNEIHEKSVKIL  668 (684)
Q Consensus       649 L~~L~~~~~~~i~~~a~~ii  668 (684)
                      ++.|..+++.++...|....
T Consensus       640 l~~L~~d~~~dvr~~a~~a~  659 (759)
T KOG0211|consen  640 LETLSSDQELDVRYRAILAF  659 (759)
T ss_pred             HHHhccCcccchhHHHHHHH
Confidence            67776677777765555443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.31  E-value=5.7e-05  Score=81.04  Aligned_cols=333  Identities=15%  Similarity=0.116  Sum_probs=201.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIES--MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~--~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      +..+...|++..+.++..|+..+..++---.  ..-+.+...|+  .|.+.|.... |++.--.+.++..|.....-.+.
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHHHhcccccc
Confidence            4455666778889999999887766543211  12234444555  3677887666 88877766666666652111111


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC---chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC---RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC  405 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~---r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~  405 (684)
                      .---.+++|.|..+|++....|+++++..++.||...+++   |+-+.   +--.|+.+| ...+.+++++|..+++.++
T Consensus       878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelL-kahkK~iRRaa~nTfG~Ia  953 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELL-KAHKKEIRRAAVNTFGYIA  953 (1172)
T ss_pred             CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHHHHHHHHHHHhhhhHHH
Confidence            1112478999999999999999999999999999887763   22111   122455666 5567899999999999998


Q ss_pred             cCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHH
Q 035507          406 RGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV  485 (684)
Q Consensus       406 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  485 (684)
                      +.-.+      ..++..|+.-|...+...+....-+++-.+ ..+       --..++|.|+.=-..++..++.-.++++
T Consensus       954 kaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVa-E~c-------~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  954 KAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVA-ETC-------GPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             HhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhh-hhc-------CchhhhHHHHhhccCchhHHHHhHHHHH
Confidence            77411      234444444444333333333222333222 110       0113677777777788899999999988


Q ss_pred             HHHHcCChhh-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-------c
Q 035507          486 GNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-------N  557 (684)
Q Consensus       486 ~nl~~~~~~~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-------~  557 (684)
                      +.+-....+. .+.+.  .+.|.|-..|.+. |..-|..|+.++..++-+.+.       .|....++++|.       .
T Consensus      1020 sf~FeyigemskdYiy--av~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg~~g-------~g~eda~iHLLN~iWpNIle 1089 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIY--AVTPLLEDALMDR-DLVHRQTAMNVIKHLALGVPG-------TGCEDALIHLLNLIWPNILE 1089 (1172)
T ss_pred             HHHHHHHHHHhhhHHH--HhhHHHHHhhccc-cHHHHHHHHHHHHHHhcCCCC-------cCcHHHHHHHHHHhhhhhcC
Confidence            8876533322 22232  3678888888888 899999999999999875321       133344444432       3


Q ss_pred             CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          558 AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       558 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      ..+.+......++-.+...-.+..        .+....+-|-++...|+.. .|.+.+.+..+.+.
T Consensus      1090 ~sPhviqa~~e~~eg~r~~Lg~~~--------~~~Y~~QGLFHParkVR~~-yw~vyn~my~~~~d 1146 (1172)
T KOG0213|consen 1090 TSPHVIQAFDEAMEGLRVALGPQA--------MLKYCLQGLFHPARKVRKR-YWTVYNSMYHGSQD 1146 (1172)
T ss_pred             CChHHHHHHHHHHHHHHHHhchHH--------HHHHHHHhccCcHHHHHHH-HHHHHHhHhhcccc
Confidence            466666555555444433212211        2334445566666666654 45555666655443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=3.9e-06  Score=86.71  Aligned_cols=304  Identities=17%  Similarity=0.249  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 035507          264 NLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKL  342 (684)
Q Consensus       264 ~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~l  342 (684)
                      +.+..|+..+-+-.+++- -.+.-+.+..+++.|+++|+.++ ..+..-+...+.|..-.-+.-+..+...|+|..|+.+
T Consensus       403 ~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~  481 (743)
T COG5369         403 DLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL  481 (743)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence            444444443333333322 22334556778999999999877 6778888888888887777888899999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHhhCCCCCC-chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC--CChhhh---
Q 035507          343 LASPSDDVREQAVWALGNVAADSSGC-RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR--PLFDQV---  416 (684)
Q Consensus       343 L~~~~~~v~~~a~~~L~nLa~~~~~~-r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~---  416 (684)
                      +.+.+..+|....|.+..+.....+. +=..+..-++..++... +++.-.++..+...|.|+..+...  ......   
T Consensus       482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~  560 (743)
T COG5369         482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA  560 (743)
T ss_pred             hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEec
Confidence            99999999999999999998655432 22344555678888888 778888999999999999875421  111111   


Q ss_pred             ---hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhc----CC-------CCcccHhHH
Q 035507          417 ---RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELL----GH-------PSPSVLTPA  481 (684)
Q Consensus       417 ---~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL----~~-------~~~~v~~~a  481 (684)
                         .-....+.+.+...+|-.....|..+.+++ ..++...+.+.+. .++..+..+|    +.       ....+..+-
T Consensus       561 ~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~a-a~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~  639 (743)
T COG5369         561 TPRRYLFKRLIDKYEENNPMEILEGCYILVRNA-ACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI  639 (743)
T ss_pred             ChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH-hccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence               235556677777788877777889998888 5555554444443 3444444433    22       122333444


Q ss_pred             HHHHHHHHcCChhhHHHHHhcCChHHHHHHhc--cCCChhHHHHHHHHHHHHhc---C------ChHHHHHHHHhCCHHH
Q 035507          482 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLI--HNHKNSIKKEVSWIISNIAC---G------NREQIQAVIDAGLIGP  550 (684)
Q Consensus       482 l~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~---~------~~~~~~~l~~~g~l~~  550 (684)
                      .....++....+...+.+...   |.+-..=.  ...+.++-.+..|.+.|+.-   +      +.+.++.+.+.|+-+.
T Consensus       640 s~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~  716 (743)
T COG5369         640 SYTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREW  716 (743)
T ss_pred             ceeeecccccccccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHH
Confidence            444445544333222222110   22211111  11145677788898888743   2      2356777778888888


Q ss_pred             HHHHhccCCHhHHHHHHHHHHHh
Q 035507          551 LVNLLQNAEFDIKEEAAWAISNA  573 (684)
Q Consensus       551 Li~ll~~~~~~v~~~a~~aL~nl  573 (684)
                      +..+....++.+++.+-.||.++
T Consensus       717 l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         717 LVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHhccCcHHHHHHHHHHHHhh
Confidence            88888888999999999999887

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.31  E-value=5.7e-05  Score=79.43  Aligned_cols=335  Identities=14%  Similarity=0.093  Sum_probs=203.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLL---SIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN  326 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~---s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  326 (684)
                      .+..+++.|++..++++..|+.....++   +.. .....+...|.  .|.+.|.... |++.--.+.++..|.+...-.
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c-~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC-GETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc-chHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhccc
Confidence            5677888899999999999887655443   322 12334444554  3566666555 888777777776666521111


Q ss_pred             HHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC---chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507          327 TKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC---RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSN  403 (684)
Q Consensus       327 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~---r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n  403 (684)
                      .-.---.|++|.|..+|.+....+..+.+..++.||..+|+.   |+-+.   +--.|+..| .+.+.+++++|..+++.
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG~  756 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFGC  756 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhhh
Confidence            111112588999999999999999999999999999888763   11111   122455666 66788999999999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507          404 LCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW  483 (684)
Q Consensus       404 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  483 (684)
                      +++.-.+      ..++..|+.-|...+...+....-+++-.+ ..       .--..++|.|+.=-..++..++.-.++
T Consensus       757 Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVa-e~-------cgpfsVlP~lm~dY~TPe~nVQnGvLk  822 (975)
T COG5181         757 ISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVA-EY-------CGPFSVLPTLMSDYETPEANVQNGVLK  822 (975)
T ss_pred             HHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhH-hh-------cCchhhHHHHHhcccCchhHHHHhHHH
Confidence            9877411      334455554444444333333333333322 10       011136777777777788899998888


Q ss_pred             HHHHHHcCChhh-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHH--HHHHHHhCCHHHHHHHhccCCH
Q 035507          484 TVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ--IQAVIDAGLIGPLVNLLQNAEF  560 (684)
Q Consensus       484 ~L~nl~~~~~~~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l~~~g~l~~Li~ll~~~~~  560 (684)
                      +++.+-.....+ .+.+.  .+.|.|-..|.+. |+.-|..|..++..++-+.+..  ...++.  ++..|..-+-...+
T Consensus       823 am~fmFeyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sP  897 (975)
T COG5181         823 AMCFMFEYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSP  897 (975)
T ss_pred             HHHHHHHHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCc
Confidence            888776433322 22332  4678888888888 9999999999999997643221  111111  23333333334556


Q ss_pred             hHHH---HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          561 DIKE---EAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       561 ~v~~---~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      .+..   ++..++.+....  ...         +..+.+-|-++...++ ...|...+++.+-...
T Consensus       898 hvi~~~~Eg~e~~~~~lg~--g~~---------m~Yv~qGLFHPs~~VR-k~ywtvyn~myv~~~d  951 (975)
T COG5181         898 HVIQSFDEGMESFATVLGS--GAM---------MKYVQQGLFHPSSTVR-KRYWTVYNIMYVFDSD  951 (975)
T ss_pred             HHHHHHHHHHHHHHHHhcc--HHH---------HHHHHHhccCchHHHH-HHHHHHHhhhhhcccc
Confidence            5554   445555555432  223         3334444556665554 5667777777765444

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.25  E-value=0.00041  Score=72.65  Aligned_cols=250  Identities=29%  Similarity=0.328  Sum_probs=173.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ..++.+.+.+.+.++.++..|++.+..+-.           .-.++.+..++.+.+ +.+|..|+.+|+.+-.       
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~-------  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDED-PRVRDAAADALGELGD-------  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC-------
Confidence            367889999999999999999998666432           236889999999988 8999999998887765       


Q ss_pred             HHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCc-----------hHHHHH
Q 035507          329 VVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTE-----------LSMLRI  396 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~-----------~~v~~~  396 (684)
                          ...++.|+.++. +++..+|..|.++|+.+-..           ..+.+++..+.+...           ..++..
T Consensus       104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                246899999998 59999999999999998322           136778877744321           134555


Q ss_pred             HHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcc
Q 035507          397 ATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPS  476 (684)
Q Consensus       397 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~  476 (684)
                      +...+..+-..          ..++.+..++.+.+..++..+..+++.+. ...         ..+.+.+...+.+++..
T Consensus       169 a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~-~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         169 AAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLG-SEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhh-cch---------hhHHHHHHHHhcCCCHH
Confidence            55555554332          45677778888888888888888888887 332         23557778888888888


Q ss_pred             cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc
Q 035507          477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ  556 (684)
Q Consensus       477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~  556 (684)
                      ++..++.+++.+-...           ..+.+...+... +..++..+...+...  ..         ......+...+.
T Consensus       229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDEE-----------AVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcch-----------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhh
Confidence            8888888887764322           345666667666 555555554444411  11         112445555566


Q ss_pred             cCCHhHHHHHHHHHHHhhc
Q 035507          557 NAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       557 ~~~~~v~~~a~~aL~nl~~  575 (684)
                      +.+..++..+..++.....
T Consensus       286 ~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         286 DEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             cchhhHHHHHHHHHHhhcc
Confidence            6677777777777766654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=8e-05  Score=77.83  Aligned_cols=319  Identities=12%  Similarity=0.086  Sum_probs=199.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      +.+++++......|..++..|+..+.+++....... ...-..+...+.++..+++ ..++. ++..+-.+..+-...+.
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA  160 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence            467888999999999999999888887765433111 1112234556667666655 45554 44444444431111111


Q ss_pred             -HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          329 -VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       329 -~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                       .+-=.++||.|-.-+...++..|...+.-|.-+-..+ . .+++.- ...++.|+..| .++..+++..+-.+++++..
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-D-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-c-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence             1221234555555555578888888877777664333 2 344332 22456667777 67778888877777777765


Q ss_pred             CC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcc-cHhHHHHH
Q 035507          407 GK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPS-VLTPALWT  484 (684)
Q Consensus       407 ~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~-v~~~al~~  484 (684)
                      .- ..+........++.++..++++++.++..|+.-+..+. .-... .-...-+|++..+++++.+..+. ++..|...
T Consensus       238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV-~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~  315 (675)
T KOG0212|consen  238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFV-KIPGR-DLLLYLSGILTAILPCLSDTEEMSIKEYAQMV  315 (675)
T ss_pred             HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHh-cCCCc-chhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence            54 33333356788899999999999999988877666665 22222 22234457888888888877664 44444333


Q ss_pred             HHHHHc--CChhhHHHHHhc-CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507          485 VGNIVM--GDDFQTQCIINH-GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD  561 (684)
Q Consensus       485 L~nl~~--~~~~~~~~~i~~-g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~  561 (684)
                      -+.+..  +.+...+. ++. .++..+.+.+.++ ..+.|.++..-+..+-...+.+.- .....+++.|+.-|++.+.+
T Consensus       316 n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~  392 (675)
T KOG0212|consen  316 NGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDE  392 (675)
T ss_pred             HHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhH
Confidence            222221  11111111 332 3567888888888 888888887666666554444433 33456899999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 035507          562 IKEEAAWAISNASSRGT  578 (684)
Q Consensus       562 v~~~a~~aL~nl~~~~~  578 (684)
                      +...+...+.+++...+
T Consensus       393 vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  393 VVLLALSLLASICSSSN  409 (675)
T ss_pred             HHHHHHHHHHHHhcCcc
Confidence            99999999999998543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=0.00025  Score=69.33  Aligned_cols=301  Identities=13%  Similarity=0.134  Sum_probs=197.9

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHH--HHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507          247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRF--VEFLMREDYPQLQFQAAWALTNIASGTS  324 (684)
Q Consensus       247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~L--v~lL~~~~~~~v~~~A~~~L~~l~~~~~  324 (684)
                      +.+.++.++..+..+|.++..+|...+..++.. +.....+.++.....+  ..+-...+ .-.|......+..|.+-++
T Consensus       126 NaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSp  203 (524)
T KOG4413|consen  126 NAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISP  203 (524)
T ss_pred             hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCH
Confidence            446788899999999999999999999886544 3455666666655443  23333334 4677778888999999899


Q ss_pred             hhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHH
Q 035507          325 ENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLS  402 (684)
Q Consensus       325 ~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~  402 (684)
                      +.....-..|.+..|..=|.. .+.-|+.+++.....++..... |+.+.+.|.+..+.+.+... +++--.-.++....
T Consensus       204 esaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfg  282 (524)
T KOG4413|consen  204 ESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFG  282 (524)
T ss_pred             HHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH
Confidence            998888899999988887766 7778889999999999866543 77888888888888877432 23322222333333


Q ss_pred             HhccCC------CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhch--HHHHHHhcCC-C
Q 035507          403 NLCRGK------PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGV--CGRLVELLGH-P  473 (684)
Q Consensus       403 nL~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~--l~~L~~lL~~-~  473 (684)
                      .+....      +........-.+.....++..+|++.+..|+.+++.+.  .+.+..+.+.+.|-  ...++.-..+ .
T Consensus       283 kffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilG--SnteGadlllkTgppaaehllarafdqn  360 (524)
T KOG4413|consen  283 KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILG--SNTEGADLLLKTGPPAAEHLLARAFDQN  360 (524)
T ss_pred             HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhcc--CCcchhHHHhccCChHHHHHHHHHhccc
Confidence            332221      11111112333444566778899999999999999998  45556666666653  3444433333 3


Q ss_pred             CcccHhHHHHHHHHHHcCC---hhh----------HHHHHhc-------CChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          474 SPSVLTPALWTVGNIVMGD---DFQ----------TQCIINH-------GAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       474 ~~~v~~~al~~L~nl~~~~---~~~----------~~~~i~~-------g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      ...-+..++++|.+++...   +++          +..+.++       .-+..+..+++.+ .++++-.+..++..++.
T Consensus       361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAA  439 (524)
T ss_pred             ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHc
Confidence            3445678889999887432   111          1111111       2355677788888 89999999999999988


Q ss_pred             CChHHHHHHHHhCCHHHHHH
Q 035507          534 GNREQIQAVIDAGLIGPLVN  553 (684)
Q Consensus       534 ~~~~~~~~l~~~g~l~~Li~  553 (684)
                      ..=.+...+.+.+++....+
T Consensus       440 qPWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  440 QPWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             CcHHHHHHhcCccceeeecc
Confidence            65444444445555544443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.19  E-value=0.00021  Score=74.85  Aligned_cols=250  Identities=24%  Similarity=0.261  Sum_probs=176.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      ..++.+++++.+.+ ..++..|++.++.+..           ..+++.+..++.+.++.+|..|+.+|+.+-.       
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------  103 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------  103 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence            36788999999986 8999999999877765           2568999999999999999999999998721       


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcH------------HHHHHH
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDE------------QVLTDA  438 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~------------~v~~~a  438 (684)
                          ...+++++..+..+.+..++..+.++|..+-...          .+..++..+.+...            .++..+
T Consensus       104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                1247899999966789999999999999886552          35566666665442            345555


Q ss_pred             HHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh
Q 035507          439 CWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN  518 (684)
Q Consensus       439 l~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~  518 (684)
                      ..+++.+. +           ...++.+...+.+....++..|..+++.+....         ..+.+.+...+.+. +.
T Consensus       170 ~~~l~~~~-~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~  227 (335)
T COG1413         170 AEALGELG-D-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SL  227 (335)
T ss_pred             HHHHHHcC-C-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CH
Confidence            55555544 1           134677888888888888999999998887655         23556777888887 88


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 035507          519 SIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL  598 (684)
Q Consensus       519 ~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL  598 (684)
                      .+|..++.+++.+-...           ..+.+...+...+..++..+..+....-   ..         .....+...+
T Consensus       228 ~vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~  284 (335)
T COG1413         228 EVRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLL  284 (335)
T ss_pred             HHHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHh
Confidence            89988888888774432           4566677777777777666665555111   01         1133444455


Q ss_pred             cCCChHHHHHHHHHHHHHHh
Q 035507          599 QCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       599 ~~~~~~v~~~al~~L~~il~  618 (684)
                      .+.+..+...+...+..+..
T Consensus       285 ~~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         285 IDEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             hcchhhHHHHHHHHHHhhcc
Confidence            55566666666655555443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.0026  Score=68.52  Aligned_cols=325  Identities=18%  Similarity=0.171  Sum_probs=195.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI  331 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~  331 (684)
                      -+-+++|+++--..++-+-..+.-++..+.+..+.     ++..+..=|.+.+ +.....|+.+++|+.+  -+.+..+.
T Consensus        77 mEaV~LLss~kysEKqIGYl~is~L~n~n~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~  148 (938)
T KOG1077|consen   77 MEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA  148 (938)
T ss_pred             HHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh
Confidence            34566666654444444444444444333222222     2233334444555 7888889999999987  34444433


Q ss_pred             hcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          332 EHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       332 ~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                        .-|+   ++|-+  ..+-|+..|+.+|..|-+.+|.   .+...+-...++.+| ++.+-.+...+...+--++...|
T Consensus       149 --~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p  219 (938)
T KOG1077|consen  149 --DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNP  219 (938)
T ss_pred             --hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCC
Confidence              1234   55545  3467899999999999888765   333345677888888 55556667777777777777765


Q ss_pred             CCChhhhhchHHHHHHHhc-------------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--C
Q 035507          410 RPLFDQVRPALPALAQLIH-------------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--S  474 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~-------------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~  474 (684)
                      ..-......++..|.....             -+.|..+..+++.|.+.-...++.....+.  .++..++...+.+  .
T Consensus       220 ~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~  297 (938)
T KOG1077|consen  220 ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKS  297 (938)
T ss_pred             HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccc
Confidence            4444333444444433332             145888999999998876222222332222  3455555555421  1


Q ss_pred             c-----ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHH
Q 035507          475 P-----SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIG  549 (684)
Q Consensus       475 ~-----~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~  549 (684)
                      .     ..+...+.-.-+++.+-+..-+.+.  ..+..|-+++.+. ...+|.-|...++.++... ..+..+-..  ..
T Consensus       298 k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~-~s~davK~h--~d  371 (938)
T KOG1077|consen  298 KKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSE-FSIDAVKKH--QD  371 (938)
T ss_pred             cchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhcc-chHHHHHHH--HH
Confidence            1     2222333333444444443333333  3677888899888 8899999999999988753 233333333  67


Q ss_pred             HHHHHhc-cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHH
Q 035507          550 PLVNLLQ-NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC  609 (684)
Q Consensus       550 ~Li~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~a  609 (684)
                      .++..|. ..|..+|+.|+..|..++...   +++.     ++..|.++|.+.|+.+++-.
T Consensus       372 ~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----IV~elLqYL~tAd~sireei  424 (938)
T KOG1077|consen  372 TIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----IVAELLQYLETADYSIREEI  424 (938)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----HHHHHHHHHhhcchHHHHHH
Confidence            7788888 569999999999999998644   3333     45577788887877766543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=0.00094  Score=72.70  Aligned_cols=325  Identities=19%  Similarity=0.230  Sum_probs=195.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+..+-+.|+..|+.+|-.|++.+..+   .-+.+..+    ++-.+-+...+.. +.+|..|+.++..+-+-+++....
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsI---Rvp~IaPI----~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~q  180 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSI---RVPMIAPI----MLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQ  180 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhc---chhhHHHH----HHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHH
Confidence            566777788888888777666655442   11111111    1222334445566 899999999999999988877775


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-  408 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-  408 (684)
                      +.     ..+-.+|.+.++-|.-.|+.|.-.+|-+.-.   .+  .+-...+.+++. +-+.=-+..++..|...|+.. 
T Consensus       181 L~-----e~I~~LLaD~splVvgsAv~AF~evCPerld---LI--HknyrklC~ll~-dvdeWgQvvlI~mL~RYAR~~l  249 (968)
T KOG1060|consen  181 LE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERLD---LI--HKNYRKLCRLLP-DVDEWGQVVLINMLTRYARHQL  249 (968)
T ss_pred             HH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHHH---Hh--hHHHHHHHhhcc-chhhhhHHHHHHHHHHHHHhcC
Confidence            43     4455677888899999999999988754311   11  122334444442 111111222333333334433 


Q ss_pred             CCCC----------------------------hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507          409 PRPL----------------------------FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA  460 (684)
Q Consensus       409 ~~~~----------------------------~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~  460 (684)
                      +.+.                            .....-++...-.++.+.++.+..+++.+..+++ ..  ...     .
T Consensus       250 ~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lA-P~--~~~-----~  321 (968)
T KOG1060|consen  250 PDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLA-PK--NQV-----T  321 (968)
T ss_pred             CCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhC-CH--HHH-----H
Confidence            2110                            1111334455556778899999999999999999 32  222     2


Q ss_pred             chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh-ccCCChhHHHHHHHHHHHHhcCChHHH
Q 035507          461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-IHNHKNSIKKEVSWIISNIACGNREQI  539 (684)
Q Consensus       461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~  539 (684)
                      .++..|+.+|.++ ..++...+..|..++...+..        +-|.+-.+. .+.+...++.-=..+|++++...  ++
T Consensus       322 ~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~l--------F~P~lKsFfv~ssDp~~vk~lKleiLs~La~es--ni  390 (968)
T KOG1060|consen  322 KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTL--------FEPHLKSFFVRSSDPTQVKILKLEILSNLANES--NI  390 (968)
T ss_pred             HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhh--------hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc--cH
Confidence            4577889988764 457777888887777655432        224444443 22213345555566777776531  11


Q ss_pred             HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       540 ~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      .     .+++-+...+.+.+.++...|..||+.++.....      +...++..|+.++.+.+..|+..+...+..+++.
T Consensus       391 ~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  391 S-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             H-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence            1     1455666667777777777777888877653211      2334677788888887888888888888877776


Q ss_pred             cccc
Q 035507          620 GEAE  623 (684)
Q Consensus       620 ~~~~  623 (684)
                      .+..
T Consensus       460 ~p~~  463 (968)
T KOG1060|consen  460 DPAE  463 (968)
T ss_pred             ChHH
Confidence            5543

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=98.16  E-value=1.5e-06  Score=71.71  Aligned_cols=74  Identities=30%  Similarity=0.320  Sum_probs=46.5

Q ss_pred             chhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCC--CCCCCCccchhhhccHHHHHHHhcCCCHHHHHHHHH
Q 035507          198 EHSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLP--SALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATT  271 (684)
Q Consensus       198 ~~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~  271 (684)
                      .+...+.|.+.+|+|||+||+ +|.|||++........+  ...............++.++..+.|+|+..|+.|+.
T Consensus        20 ~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   20 AEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAGVNSDDPEVQLEATQ   96 (97)
T ss_dssp             HHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHhcCCCCHHHHHHhhC
Confidence            345567889999999999999 99999998754433221  000001112222346789999999999999999975

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.00064  Score=75.73  Aligned_cols=304  Identities=13%  Similarity=0.174  Sum_probs=196.9

Q ss_pred             hhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507          247 KLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       247 ~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      -++.++.+...+.+ +++.+|.-|+..+..+ ....+-...+++.|++..|+++|.+.  |..|..++.+|..+++ +++
T Consensus      1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~ 1844 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQ 1844 (2235)
T ss_pred             hhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcH
Confidence            35667777777774 6788999998888664 44456788899999999999999764  5899999999999999 778


Q ss_pred             hHHHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCC---CCCchhHhh----------cCCHHHHHHHhccC-Cc
Q 035507          326 NTKVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADS---SGCRDLVLS----------EGALIPLLAQLNEH-TE  390 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~---~~~r~~i~~----------~g~l~~Ll~~L~~~-~~  390 (684)
                      ....-.++|++..+..++- +.++..|.+++..++.+..+.   |..+-.+..          ...-+..+..+... .+
T Consensus      1845 i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~En 1924 (2235)
T KOG1789|consen 1845 IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSEN 1924 (2235)
T ss_pred             HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCC
Confidence            8888888999888888664 467899999999999998654   222111111          00112333333211 11


Q ss_pred             h------HHHHHHHHHHHHhcc----CC---C--------------------------------------CCChhhhhch
Q 035507          391 L------SMLRIATTTLSNLCR----GK---P--------------------------------------RPLFDQVRPA  419 (684)
Q Consensus       391 ~------~v~~~a~~~L~nL~~----~~---~--------------------------------------~~~~~~~~~~  419 (684)
                      +      ..+......+..+..    ..   |                                      ..+.....+.
T Consensus      1925 PELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~L 2004 (2235)
T KOG1789|consen 1925 PELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTEL 2004 (2235)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHH
Confidence            1      112222222222111    10   0                                      1111233445


Q ss_pred             HHHHHHHhcCCcH--HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHH
Q 035507          420 LPALAQLIHSNDE--QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ  497 (684)
Q Consensus       420 l~~L~~lL~~~d~--~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  497 (684)
                      +..+..++..+++  ....-...++..+. ...+...+.+=..|.+|.++..+...+..+-..|++.|..++... ...+
T Consensus      2005 Lek~lelm~~~~peqh~l~lLt~A~V~L~-r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~ 2082 (2235)
T KOG1789|consen 2005 LEKVLELMSRPTPEQHELDLLTKAFVELV-RHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCD 2082 (2235)
T ss_pred             HHHHHHHhcCCCcccchhHHHHHHHHHHH-HhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHH
Confidence            5555556654332  22222222333333 344445555556699999999998888888899999999998754 3666


Q ss_pred             HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccC
Q 035507          498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNA  558 (684)
Q Consensus       498 ~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~  558 (684)
                      ++.....+..++..+...  +...--|+.+|..+.. ...+-.....+.|++|.|+.+|+..
T Consensus      2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            676667777788877654  3445578888887765 4456666778899999999999753

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.0021  Score=70.13  Aligned_cols=171  Identities=15%  Similarity=0.163  Sum_probs=121.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI  331 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~  331 (684)
                      ..|+.+|.|+....+..|+.-+..+...... ..     ...|..|+...+.+ .+++...---|...|...++-.-   
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-vS-----~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLAL---  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-VS-----LLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLAL---  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-HH-----HHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCcee---
Confidence            5788999999889999999877776655443 22     25678888888877 88888777777777764443211   


Q ss_pred             hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC
Q 035507          332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP  411 (684)
Q Consensus       332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~  411 (684)
                        =-|..+-+-|+++++.+|..|+++|+.|       |--++ .+++-.-++.+..++.+-+++.|+.|+-.|-+-++..
T Consensus       108 --LSIntfQk~L~DpN~LiRasALRvlSsI-------Rvp~I-aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~  177 (968)
T KOG1060|consen  108 --LSINTFQKALKDPNQLIRASALRVLSSI-------RVPMI-APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ  177 (968)
T ss_pred             --eeHHHHHhhhcCCcHHHHHHHHHHHHhc-------chhhH-HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence              1377888889999999999999999887       22111 1111222233346778899999999998887765432


Q ss_pred             ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      .    ..++..+-.+|.+.++-|.-.|+.|+-.+|
T Consensus       178 k----~qL~e~I~~LLaD~splVvgsAv~AF~evC  208 (968)
T KOG1060|consen  178 K----DQLEEVIKKLLADRSPLVVGSAVMAFEEVC  208 (968)
T ss_pred             H----HHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence            2    356667777888888999999988888777

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.09  E-value=0.00034  Score=73.05  Aligned_cols=339  Identities=14%  Similarity=0.119  Sum_probs=204.0

Q ss_pred             HHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChH
Q 035507          272 QFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDD  349 (684)
Q Consensus       272 ~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~  349 (684)
                      .|.+++...+.....+.-....+.+..++-+++ .+++..|.+++..+.. +++....+.+.+.--.++.-|..  .+..
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~   83 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV   83 (371)
T ss_pred             HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence            344445444433333333344555555555556 7999999999999998 67777777777754444555554  4456


Q ss_pred             HHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC
Q 035507          350 VREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS  429 (684)
Q Consensus       350 v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~  429 (684)
                      -|++|+..+..+.........  ...|.+..++... .+.+...+..|+.+|..++-..  +......|++..+.+.+.+
T Consensus        84 ER~QALkliR~~l~~~~~~~~--~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d  158 (371)
T PF14664_consen   84 EREQALKLIRAFLEIKKGPKE--IPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALID  158 (371)
T ss_pred             HHHHHHHHHHHHHHhcCCccc--CCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHh
Confidence            788999999888765322211  3567788888888 5577789999999999998874  4455668999999998887


Q ss_pred             CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-------Cc--ccHhHHHHHHHHHHcCChhhHHHHH
Q 035507          430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-------SP--SVLTPALWTVGNIVMGDDFQTQCII  500 (684)
Q Consensus       430 ~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-------~~--~v~~~al~~L~nl~~~~~~~~~~~i  500 (684)
                      +..++...++.++.++. + .+..++.+...--++.++.-+.+.       +.  .....+..++..+...-+...-.-.
T Consensus       159 ~~~~~~~~l~~~lL~lL-d-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~  236 (371)
T PF14664_consen  159 GSFSISESLLDTLLYLL-D-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM  236 (371)
T ss_pred             ccHhHHHHHHHHHHHHh-C-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence            76678899999999999 4 444444333322244444433322       11  1334455555555544332221111


Q ss_pred             h-cCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHH------HhCCHHHHHHHh---ccCCHhHHHHHHHH
Q 035507          501 N-HGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVI------DAGLIGPLVNLL---QNAEFDIKEEAAWA  569 (684)
Q Consensus       501 ~-~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~------~~g~l~~Li~ll---~~~~~~v~~~a~~a  569 (684)
                      + ...+..|+..|..+ .+++|+.....+..+.. ..+.......      ..|-+..--++-   .......... ..-
T Consensus       237 ~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~-~~~  314 (371)
T PF14664_consen  237 NDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHR-SSK  314 (371)
T ss_pred             CCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcc-ccc
Confidence            2 25788899999888 88899999988888865 2221111111      111110000000   0000000000 000


Q ss_pred             HHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhccc
Q 035507          570 ISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       570 L~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~~~  621 (684)
                      -.++......--...+++.|.++.|+++.... ++.+...|.-.|..+++.+.
T Consensus       315 ~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la~  367 (371)
T PF14664_consen  315 RPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLAS  367 (371)
T ss_pred             cccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            01111100011234467999999999999987 88899999999999887653

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.08  E-value=5.4e-06  Score=56.71  Aligned_cols=41  Identities=46%  Similarity=0.860  Sum_probs=38.3

Q ss_pred             CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhC
Q 035507          323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAA  363 (684)
Q Consensus       323 ~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~  363 (684)
                      +++++..+++.|++|.|+.+|.++++.+++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.00  E-value=1.1e-05  Score=55.08  Aligned_cols=40  Identities=28%  Similarity=0.569  Sum_probs=37.2

Q ss_pred             hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      +++.+.+++.|++|.|+.+|.++ ++.++++|+|+|+||++
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            56788999999999999999988 99999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.99  E-value=0.00021  Score=80.96  Aligned_cols=270  Identities=17%  Similarity=0.167  Sum_probs=178.3

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC---Cchh
Q 035507          251 LPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASG---TSEN  326 (684)
Q Consensus       251 l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~---~~~~  326 (684)
                      ++.+...+.+ ...+.+.+|+..|..+...-.   ++..-.-++|.++.++.++. .+||..|+.+|+.+...   -+..
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcc
Confidence            4444444443 345778888888887654432   22233458999999999988 89999999999988762   2222


Q ss_pred             HHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhC------------------CCCCC---chhHhh--c----CCH
Q 035507          327 TKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAA------------------DSSGC---RDLVLS--E----GAL  378 (684)
Q Consensus       327 ~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~------------------~~~~~---r~~i~~--~----g~l  378 (684)
                      -..+...-++|.|-.++.+ ....+|..-+..|+.||.                  +.++.   ...-.+  .    ..+
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V  579 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV  579 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence            2233334567888888777 444555555555655552                  11111   000000  0    113


Q ss_pred             HHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507          379 IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVI  458 (684)
Q Consensus       379 ~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~  458 (684)
                      ...+..|..++++-+++..+..|.-||..-...  ..-.-+++.|...|++.|+.++..-...+..++ -. -.  ..-+
T Consensus       580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvs-i~-VG--~rs~  653 (1431)
T KOG1240|consen  580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVS-IF-VG--WRSV  653 (1431)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceE-EE-Ee--eeeH
Confidence            333333446667788888888888888654111  112456788999999999999988888887666 11 11  1114


Q ss_pred             HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      +..++|.|.+-|.++.+.|...|+.++.-++...--....+++  +++....+|-++ +.-+|+.++.++..++.
T Consensus       654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            5578899999999999999999999999998755434444444  777788888899 99999999999988865

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.0061  Score=65.79  Aligned_cols=295  Identities=12%  Similarity=0.122  Sum_probs=177.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      .+..+.+.|.|.|+..+.-|+.++.++-+.+.  .+.+.  .-+|   ++|-+++ .+-++..|+-||..+-..+++.  
T Consensus       112 vin~iknDL~srn~~fv~LAL~~I~niG~re~--~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl--  182 (938)
T KOG1077|consen  112 VINSIKNDLSSRNPTFVCLALHCIANIGSREM--AEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL--  182 (938)
T ss_pred             HHHHHHhhhhcCCcHHHHHHHHHHHhhccHhH--HHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence            45566677778888888889999988765532  22111  1233   5554443 3578888999999998865542  


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc-----cC-----------CchH
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN-----EH-----------TELS  392 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~-----~~-----------~~~~  392 (684)
                       +-..+....++.+|.+.+-.|...+...+..|+...|+..     .+.++.-+..|.     ..           +.+=
T Consensus       183 -~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW  256 (938)
T KOG1077|consen  183 -VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW  256 (938)
T ss_pred             -cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-----hhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence             2223567889999998888888888888888887665421     122333222221     11           1233


Q ss_pred             HHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCc-----H-----HHHHHHHHHHHhhccCCChHHHHHHHHhch
Q 035507          393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND-----E-----QVLTDACWALFGLSGDRNNDKIQAVIEAGV  462 (684)
Q Consensus       393 v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d-----~-----~v~~~al~~L~~L~~~~~~~~~~~~~~~g~  462 (684)
                      +...++.+|.++   ++..+..........+-.+|...+     .     ..+..++.-.-+++ ..-+..-+.+.  ..
T Consensus       257 L~vKl~rlLq~~---p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~-~h~D~e~~ll~--~~  330 (938)
T KOG1077|consen  257 LQVKLLRLLQIY---PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA-IHLDSEPELLS--RA  330 (938)
T ss_pred             HHHHHHHHHHhC---CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH-HHcCCcHHHHH--HH
Confidence            444555555555   222222233333344444443211     1     11112222222222 11111112222  35


Q ss_pred             HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507          463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV  542 (684)
Q Consensus       463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  542 (684)
                      +..|.+++.+.+..+|.-|+..+..++.... ..+.+-.+  .+.++..|....|..+|+.|+..|..+|...  +..  
T Consensus       331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~--Nak--  403 (938)
T KOG1077|consen  331 VNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS--NAK--  403 (938)
T ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh--hHH--
Confidence            7789999999999999999999999998654 33444433  7788888884448999999999999998732  222  


Q ss_pred             HHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          543 IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       543 ~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                         .++.-|++.+...++.+|++.+--+.-++.
T Consensus       404 ---~IV~elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  404 ---QIVAELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             ---HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence               146677888888898888877655555544

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.98  E-value=0.0016  Score=73.31  Aligned_cols=383  Identities=13%  Similarity=0.089  Sum_probs=255.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVV  330 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i  330 (684)
                      .+..-++-+..++.++..++..+.+++..-.   ......++++.+.++..++. ..+|..|...+.++..--...-  -
T Consensus       239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d  312 (759)
T KOG0211|consen  239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--D  312 (759)
T ss_pred             HHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--h
Confidence            3444444556678888888888888776543   35677899999999999888 6999999999998887211111  2


Q ss_pred             HhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC-
Q 035507          331 IEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP-  409 (684)
Q Consensus       331 ~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~-  409 (684)
                      ....+.+.+++...+++..++.........++..-..   .......+++....+ .....+.+..+..-...++.... 
T Consensus       313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~  388 (759)
T KOG0211|consen  313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNA  388 (759)
T ss_pred             hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCc
Confidence            2235678889998999999988887777776633211   111122355555555 44444555544444445554432 


Q ss_pred             -CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          410 -RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       410 -~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                       .........++|.+..+..+.++.++.+.+.....+. .-.+  ....+ ....|.+...+++..+.++....+.+..+
T Consensus       389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~-p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~  464 (759)
T KOG0211|consen  389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLS-PILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLL  464 (759)
T ss_pred             ccccccchhhhhHHHHHHHhcccchHHHHHhccccccC-ccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence             2233334566899999999999999988887777765 3222  11011 13567778888888899999888888777


Q ss_pred             HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507          489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW  568 (684)
Q Consensus       489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~  568 (684)
                      -...+...........+|.+..+-... ...++.+..+.+-.++....   ..+++...-+.+...+.+....+++.|+.
T Consensus       465 ~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~  540 (759)
T KOG0211|consen  465 EEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAAR  540 (759)
T ss_pred             HhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            666655444555667888888888777 78899999888888876321   23333334455555566667889999998


Q ss_pred             HHHHhhcCCC-HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHH
Q 035507          569 AISNASSRGT-HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLE  647 (684)
Q Consensus       569 aL~nl~~~~~-~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~  647 (684)
                      .+..++.... ...+     ...++.+..+..+++...+...+.++..+..+..+.                +-....++
T Consensus       541 ~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----------------i~~~~Llp  599 (759)
T KOG0211|consen  541 NLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----------------ITCEDLLP  599 (759)
T ss_pred             HhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----------------HHHHHHhH
Confidence            8888876332 1121     224666666666667788889999998777765432                22234467


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          648 KIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       648 ~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      .+..+..++.++|+-.+.+.+.++-
T Consensus       600 ~~~~l~~D~vanVR~nvak~L~~i~  624 (759)
T KOG0211|consen  600 VFLDLVKDPVANVRINVAKHLPKIL  624 (759)
T ss_pred             HHHHhccCCchhhhhhHHHHHHHHH
Confidence            7788888888888877777776653

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.97  E-value=0.0012  Score=69.06  Aligned_cols=315  Identities=16%  Similarity=0.080  Sum_probs=192.0

Q ss_pred             ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCCCh
Q 035507          335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRPLF  413 (684)
Q Consensus       335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~~~  413 (684)
                      ..+.+..++-+++.+++..+.+++..+..+.... ..+.+.+.-.-++..|... ....=+..|+..+..+..... ...
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~  103 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK  103 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc
Confidence            3444444444555999999999999988877553 4445555444455555433 344456688888888877632 222


Q ss_pred             hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507          414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD  493 (684)
Q Consensus       414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  493 (684)
                      ....+++..++....+.++..+..++.++..++ -.++   +.+..+|++..+.+.+.++...+....+.++-.+.....
T Consensus       104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~-l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELA-LLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-hhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence            335778888999999999999999999999999 4443   457788999999999987666677778888888775443


Q ss_pred             hhHHHHHhcCChHHHHHHhccC------CCh--hHHHHHHHHHHHHhcCChHHHHHHHHh-CCHHHHHHHhccCCHhHHH
Q 035507          494 FQTQCIINHGAVPCLLALLIHN------HKN--SIKKEVSWIISNIACGNREQIQAVIDA-GLIGPLVNLLQNAEFDIKE  564 (684)
Q Consensus       494 ~~~~~~i~~g~l~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-g~l~~Li~ll~~~~~~v~~  564 (684)
                       .++.+...--+..++.-+.+.      .+.  +.-..+..++..+...-+.-+....+. ..+..|+..|..+++++|+
T Consensus       180 -tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~  258 (371)
T PF14664_consen  180 -TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK  258 (371)
T ss_pred             -hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence             444444333355555544332      022  234455566666654322211111121 4688899999999999999


Q ss_pred             HHHHHHHHhhcCCCHHHHHH------HHHCCChHHHHhhc---cCCC---hHHHHHHHHHHHHHHhcccccccCCCCCcc
Q 035507          565 EAAWAISNASSRGTHDQIKY------LVTEGCIKPLCDLL---QCAD---PKIVTVCLEGLENILKVGEAEKNTDSDIGD  632 (684)
Q Consensus       565 ~a~~aL~nl~~~~~~~~~~~------l~~~g~l~~L~~lL---~~~~---~~v~~~al~~L~~il~~~~~~~~~~~~~~~  632 (684)
                      .....+..+..-..+.....      +...|-...-.++.   ....   |.....-...+.++..              
T Consensus       259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a--------------  324 (371)
T PF14664_consen  259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA--------------  324 (371)
T ss_pred             HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH--------------
Confidence            99999999886443321111      11111110000000   0000   0000001111111111              


Q ss_pred             hhHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 035507          633 INQFAQLVEEAEGLEKIENLQSHD-NNEIHEKSVKILETYW  672 (684)
Q Consensus       633 ~~~~~~~i~~~g~~~~L~~L~~~~-~~~i~~~a~~ii~~~f  672 (684)
                        -....+.++|.++.|..+..+. ++.+..+|.-++.+++
T Consensus       325 --Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  325 --LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             --HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence              1345677899999999996655 8999999999988765

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.00019  Score=76.40  Aligned_cols=252  Identities=15%  Similarity=0.136  Sum_probs=164.2

Q ss_pred             hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHH---HHHHHHhccCC---C
Q 035507          336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIA---TTTLSNLCRGK---P  409 (684)
Q Consensus       336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a---~~~L~nL~~~~---~  409 (684)
                      ...++.+..+.+..|+.+|+.+|..|.... ...+.+     .......+ .+.+..++..|   +|..+|.+-..   .
T Consensus       200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~~-----Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKAC-----YSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHHH-----HHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            344777778888889999988888887632 222222     23444555 66777888776   55666666322   2


Q ss_pred             CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHH
Q 035507          410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV  489 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  489 (684)
                      .........++..+.+.+.+....|+..|..+|+.+- ..+++.++...+..++..+-..=...   -+..++..=|..+
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewS  348 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWS  348 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcc
Confidence            2233345777888888999999999999999999888 77777777666655544222111100   0111111111111


Q ss_pred             c-----------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC
Q 035507          490 M-----------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA  558 (684)
Q Consensus       490 ~-----------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~  558 (684)
                      .           ..++....++.+|+-..++.-|.+. -.+||++|...++.++...|....     ..+..|++++.+.
T Consensus       349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE  422 (823)
T KOG2259|consen  349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE  422 (823)
T ss_pred             cCccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH
Confidence            1           1233455678889999999999888 889999999999999987666543     2577899999999


Q ss_pred             CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHH
Q 035507          559 EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLE  611 (684)
Q Consensus       559 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~  611 (684)
                      ..++|..|..++..++....       ++...++.+++.|.+..++++.....
T Consensus       423 ~~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~e  468 (823)
T KOG2259|consen  423 IEVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRE  468 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999886421       12223555555555555555554333

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.90  E-value=0.00049  Score=67.17  Aligned_cols=223  Identities=14%  Similarity=0.183  Sum_probs=152.8

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhc-CChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHH
Q 035507          306 PQLQFQAAWALTNIASGTSENTKVVIEH-DAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPL  381 (684)
Q Consensus       306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~L  381 (684)
                      +-.+.-|+.++.++.. .++.|..+... ..-..++.++++  +...++.+.+.+++-++-.+. +.+.+-. ...+.-+
T Consensus       163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dl  240 (432)
T COG5231         163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence            5678889999999998 77888776643 455677777776  568899999999998875543 2222221 2235566


Q ss_pred             HHHhccCCchHHHHHHHHHHHHhccCCCCCChhh--hhc-hHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCC------
Q 035507          382 LAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ--VRP-ALPALAQLIH--SNDEQVLTDACWALFGLSGDRN------  450 (684)
Q Consensus       382 l~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~--~~~-~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~------  450 (684)
                      +..........+.+-++..+.|++...|......  ..+ +.+..--++.  -.|++++.+.-..=+.+. ...      
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~-~~~k~l~~f  319 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV-QNTKKLCIF  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH-hhhhhhhHH
Confidence            6666666778899999999999999554332221  122 3333333332  245555544333222222 110      


Q ss_pred             ------------------------hHHHHHHHHh--chHHHHHHhcCCCCcc-cHhHHHHHHHHHHcCChhhHHHHHhcC
Q 035507          451 ------------------------NDKIQAVIEA--GVCGRLVELLGHPSPS-VLTPALWTVGNIVMGDDFQTQCIINHG  503 (684)
Q Consensus       451 ------------------------~~~~~~~~~~--g~l~~L~~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~~i~~g  503 (684)
                                              ..+.+.+.+.  .++..|.++++..++. ...-||.-++.+....|+....+...|
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg  399 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG  399 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence                                    0122333332  4678899999988777 667799999999999999999899999


Q ss_pred             ChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507          504 AVPCLLALLIHNHKNSIKKEVSWIISNIA  532 (684)
Q Consensus       504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  532 (684)
                      +-..++.+++++ +++|+-+|..++.-+.
T Consensus       400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i  427 (432)
T COG5231         400 VKEIIMNLINHD-DDDVKFEALQALQTCI  427 (432)
T ss_pred             hHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence            999999999999 9999999998887654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0043  Score=72.46  Aligned_cols=341  Identities=17%  Similarity=0.164  Sum_probs=195.4

Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC
Q 035507          265 LQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA  344 (684)
Q Consensus       265 ~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~  344 (684)
                      -+.-|+-.+..++.......+ -.-..+||+|.++=-+++ +.||.....+...+..++....+... ..++..|+.-|.
T Consensus       973 Sk~GaAfGf~~i~~~a~~kl~-p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt 1049 (1702)
T KOG0915|consen  973 SKKGAAFGFGAIAKQAGEKLE-PYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLT 1049 (1702)
T ss_pred             cccchhhchHHHHHHHHHhhh-hHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhcc
Confidence            333455555555443321111 112347888888877777 89998888887777774444444433 356788888888


Q ss_pred             CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---cCCchHHHH---HHHHHHHHhccCC-----CCCCh
Q 035507          345 SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---EHTELSMLR---IATTTLSNLCRGK-----PRPLF  413 (684)
Q Consensus       345 ~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~---~a~~~L~nL~~~~-----~~~~~  413 (684)
                      +....+|+.++.||..|....+.  +.+.+  -++.+...+-   ++-.+.++.   .++.+|+.+|-..     +....
T Consensus      1050 ~kewRVReasclAL~dLl~g~~~--~~~~e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPF--DQVKE--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred             chhHHHHHHHHHHHHHHHcCCCh--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence            89999999999999999977654  22222  1333332221   233344444   4666777666443     22233


Q ss_pred             hhhhchHHHHHH-HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHh-HHHHH-------
Q 035507          414 DQVRPALPALAQ-LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT-PALWT-------  484 (684)
Q Consensus       414 ~~~~~~l~~L~~-lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~-~al~~-------  484 (684)
                      .....++|.+.. -+.+.-++++..++.++..++ ........... ...+|.|+.....-++.+.. -++++       
T Consensus      1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~-Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ea 1203 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLA-KSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEA 1203 (1702)
T ss_pred             HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH-Hhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHH
Confidence            344556665552 222667999999999999999 65554433222 24666677666654443322 22222       


Q ss_pred             ---HHH-HHcCChhhHHHH---H-------hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHH
Q 035507          485 ---VGN-IVMGDDFQTQCI---I-------NHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP  550 (684)
Q Consensus       485 ---L~n-l~~~~~~~~~~~---i-------~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~  550 (684)
                         +.. .+.+.+ ..+.+   +       =...+|.+.++++++-.-..|..++..++-++..-....... ....+..
T Consensus      1204 lDt~R~s~akssp-mmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~a 1281 (1702)
T KOG0915|consen 1204 LDTLRASAAKSSP-MMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRA 1281 (1702)
T ss_pred             HHHHHHhhhcCCc-HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHH
Confidence               211 112221 11111   0       013567777777665445566666777766654211111111 1235666


Q ss_pred             HHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          551 LVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       551 Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                      ++..+++.+..+++..+.|.+.++...++++...+++.    .+..++...++ ....++..+.+|..+..
T Consensus      1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~----~l~~~l~k~es-~~siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIET----LLADLLGKDES-LKSISCATISNIANYSQ 1347 (1702)
T ss_pred             HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHH----HHHHHhccCCC-ccchhHHHHHHHHHhhH
Confidence            77777788999999999999999998888888776653    33444443332 22455555555555443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.0088  Score=67.81  Aligned_cols=232  Identities=13%  Similarity=0.157  Sum_probs=154.2

Q ss_pred             CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCCh
Q 035507          334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF  413 (684)
Q Consensus       334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~  413 (684)
                      +++..|+..+++.+..|+-.|+..++.++...|.  +  +...++..++.+++...+......++-+|..++... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~--Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--E--LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--H--HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            5678888888999999999999999999988762  2  233467778887766666788889999999999886 2222


Q ss_pred             hhhhchHHHHHHHhcC--------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHH
Q 035507          414 DQVRPALPALAQLIHS--------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV  485 (684)
Q Consensus       414 ~~~~~~l~~L~~lL~~--------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  485 (684)
                      .....++|.+.+-+.-        ....|+.+||..++.++...++...+.+.+.=.-..|...+-+++-.+|..|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            3446778888877753        33678888888888777333444444443332222344455677778888887777


Q ss_pred             HHHHcC--Ch-hhHH----------------------HHHh-cCChHHHHH----H-hccCCChhHHHHHHHHHHHHhcC
Q 035507          486 GNIVMG--DD-FQTQ----------------------CIIN-HGAVPCLLA----L-LIHNHKNSIKKEVSWIISNIACG  534 (684)
Q Consensus       486 ~nl~~~--~~-~~~~----------------------~~i~-~g~l~~L~~----l-L~~~~~~~v~~~a~~~L~nl~~~  534 (684)
                      -.....  +- ....                      .+.. .|....++.    . +.+- +..+|..|+|+|.+++..
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence            655422  10 0000                      0000 122222222    2 3455 889999999999999775


Q ss_pred             ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          535 NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       535 ~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      .++.    .....+|+++.....++...+.-+..+.+.++.
T Consensus       575 ~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  575 EPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             hHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            5543    335688999999888888888776666666554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.83  E-value=0.0001  Score=62.60  Aligned_cols=114  Identities=18%  Similarity=0.140  Sum_probs=97.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL  371 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~  371 (684)
                      .+..|+.-.....+.+-+++...-|.|.+. +|.+-..+.+.+++..++..|..++..+.+.++..|+|+|.+... ...
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n-~~~   94 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN-AKF   94 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH-HHH
Confidence            445555555544448899999999999998 888999999999999999999999999999999999999998865 678


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      +.+.++++.++..+ +++.......++.++..|+.+.
T Consensus        95 I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   95 IREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            88999999888888 7777788889999999999876

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.83  E-value=4.8e-05  Score=62.20  Aligned_cols=87  Identities=28%  Similarity=0.463  Sum_probs=70.2

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507          293 VPRFVEFL-MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL  371 (684)
Q Consensus       293 i~~Lv~lL-~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~  371 (684)
                      ||.|++.| ++++ +.+|..|+++|+.+..           ..+++.|+.+++++++.+|..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 5555 9999999999995533           144899999999999999999999999883         


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLS  402 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~  402 (684)
                        ....++.|...+.++.+..++..|.++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              22368899999977777778888988875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.80  E-value=7.2e-06  Score=94.78  Aligned_cols=105  Identities=18%  Similarity=0.095  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhhCCCCCcEEEecCcccCCCccccccccccccccccceeecccccccchhhhh-hccc-cccCCccccccc
Q 035507           75 QNFVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPSNEIILEDDISIAKSLFI-EKKL-TLSYLKSLTSFC  152 (684)
Q Consensus        75 ~~~l~~l~~~~~~~~l~~l~~~~~~~~l~~~~~~~c~~le~ii~~~~~~~~~~~~~~~~~~~-l~~l-~l~~Lp~L~~~~  152 (684)
                      |+++..+. ...|..++.++|...+|+|+.+.+.+|..+|++|..++.......  ....|. +..+ .+.++|.++++|
T Consensus       746 f~~l~~~~-~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~--~i~~f~~~~~l~~~~~l~~l~~i~  822 (889)
T KOG4658|consen  746 FPNLSKVS-ILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE--LILPFNKLEGLRMLCSLGGLPQLY  822 (889)
T ss_pred             HHHHHHHH-hhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhccc--EEecccccccceeeecCCCCceeE
Confidence            66777777 566668999999999999999999999999999985543321110  234444 5888 699999999999


Q ss_pred             cCccccccCCccceeeccCcccccccccccCc
Q 035507          153 SGSCAIKFPSLEVLVVDDCHNMMIFSRGELSA  184 (684)
Q Consensus       153 ~~~~~~~fp~L~~~~v~~Cp~l~~~~~~~~~~  184 (684)
                      +.+  ++||+|+++.|.+||+++.++.....+
T Consensus       823 ~~~--l~~~~l~~~~ve~~p~l~~~P~~~~~~  852 (889)
T KOG4658|consen  823 WLP--LSFLKLEELIVEECPKLGKLPLLSTLT  852 (889)
T ss_pred             ecc--cCccchhheehhcCcccccCccccccc
Confidence            986  999999999999999999777664433

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.79  E-value=0.00061  Score=58.06  Aligned_cols=153  Identities=9%  Similarity=0.027  Sum_probs=120.3

Q ss_pred             ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507          504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIK  583 (684)
Q Consensus       504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~  583 (684)
                      .+..|+.-.+...+.+.+.....-|.|++-. |.+-..+.+.+++..++..+...+..++..+..+|+|++.  ++...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            3555666565554788888888888888664 5777888899999999999999999999999999999997  778888


Q ss_pred             HHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 035507          584 YLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEK  663 (684)
Q Consensus       584 ~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~  663 (684)
                      .+.+.++++.++..+.++...++..++.++..+...+..             ....+-....++.++....+.+.+.+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            899999999999999998888888887777655544332             2345555566777777777777777888


Q ss_pred             HHHHHHHhc
Q 035507          664 SVKILETYW  672 (684)
Q Consensus       664 a~~ii~~~f  672 (684)
                      |...++++.
T Consensus       161 a~~fl~~~~  169 (173)
T KOG4646|consen  161 ASAFLDKHV  169 (173)
T ss_pred             HHHHHHhhc
Confidence            888887764

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.78  E-value=0.0013  Score=70.38  Aligned_cols=222  Identities=14%  Similarity=0.104  Sum_probs=148.6

Q ss_pred             HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC---h--HHHH
Q 035507          381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN---N--DKIQ  455 (684)
Q Consensus       381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~---~--~~~~  455 (684)
                      ++.+. .+.|..++..|+.++..|..+.     .....+....++++.+++..|+..|+..++-.. ...   .  +..+
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g-n~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWG-NRCPAPLERESEE  275 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hcCCCcccchhhh
Confidence            44444 6777888888888888887743     122345566788889999999999977776554 221   1  1111


Q ss_pred             HHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHH--hc
Q 035507          456 AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNI--AC  533 (684)
Q Consensus       456 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~  533 (684)
                      .=....++..+...+.+.+..+|..|..++|.+..-+++..+..++..++..+-..-.      ..+.+....++-  +.
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~------ahkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT------AHKRPKALYSSGEWSS  349 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh------cccchHHHHhcCCccc
Confidence            1122247888999999999999999999999998877766655555433332211110      011111111211  00


Q ss_pred             -----------CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 035507          534 -----------GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD  602 (684)
Q Consensus       534 -----------~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~  602 (684)
                                 ...+.-..++..|.--.++.-+.+.=.+||+.|...++.++.. ++.+...     .++.|++++++..
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHH
Confidence                       1122334466677777788888887889999999999999873 4444443     6889999999999


Q ss_pred             hHHHHHHHHHHHHHHhccc
Q 035507          603 PKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       603 ~~v~~~al~~L~~il~~~~  621 (684)
                      ..++..++.+|..|.....
T Consensus       424 ~~VRL~ai~aL~~Is~~l~  442 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVHLA  442 (823)
T ss_pred             HHHHHHHHHHHHHHHHHhe
Confidence            9999999999999988743

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.76  E-value=0.00023  Score=70.01  Aligned_cols=181  Identities=17%  Similarity=0.152  Sum_probs=117.3

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCC--CCcHHHHHHc--CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhc
Q 035507          258 VWSDDNNLQLEATTQFQKLLSIE--SMPIEEVIES--GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEH  333 (684)
Q Consensus       258 L~s~~~~~~~~a~~~L~~l~s~~--~~~~~~ii~~--g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~  333 (684)
                      -.+.|++.+..|+..|+.++...  ......+++.  .+++.+...+.+.. ..+...|+.++..++..-....... -.
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~-~~   93 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPY-AD   93 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence            35789999999999999998877  2223333221  56677777777666 6899999999999997433333333 23


Q ss_pred             CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC--CC
Q 035507          334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP--RP  411 (684)
Q Consensus       334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~--~~  411 (684)
                      ..+|.|+..+.++...+++.|..+|..++...+....      .+..++.....+.++.++..++..+..+...-+  ..
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            5689999999999999999999999999876541111      223444444478889999999888888877654  11


Q ss_pred             Chh---hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          412 LFD---QVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       412 ~~~---~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      ...   ....+.+.+..++.+.+++++..|-.++..+.
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY  205 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence            111   23668889999999999999999998888876

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.76  E-value=0.0018  Score=73.77  Aligned_cols=291  Identities=16%  Similarity=0.144  Sum_probs=185.1

Q ss_pred             hHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC----CC
Q 035507          336 VPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK----PR  410 (684)
Q Consensus       336 i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~----~~  410 (684)
                      ++.+...+.+ ...+.+..|+..|..++.....   ...-..++|.++.++ .++...++..|+.+|..+...-    +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            5566665555 4567778899999888854322   222233577777777 7888899998888887654432    33


Q ss_pred             CChhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHH
Q 035507          411 PLFDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV  489 (684)
Q Consensus       411 ~~~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  489 (684)
                      .......-++|.|.+++.+ ....++..-+..|+.++     ..+..+.+.+.-.....++.+++...       .  .-
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA-----~tA~rFle~~q~~~~~g~~n~~nset-------~--~~  565 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA-----KTAYRFLELTQELRQAGMLNDPNSET-------A--PE  565 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH-----HHHHHHHHHHHHHHhcccccCccccc-------c--cc
Confidence            4445568899999999988 55666777777777777     23333333333333333455544330       0  01


Q ss_pred             cCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507          490 MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA  567 (684)
Q Consensus       490 ~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~  567 (684)
                      .......+.+.+ ++-.....++.++ ++.||+.-...|.-+|.  |. +.    -+.-+++.|+..|.+.|..+|..-.
T Consensus       566 ~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk-~k----sND~iLshLiTfLNDkDw~LR~aFf  638 (1431)
T KOG1240|consen  566 QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK-EK----SNDVILSHLITFLNDKDWRLRGAFF  638 (1431)
T ss_pred             cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh-cc----cccchHHHHHHHhcCccHHHHHHHH
Confidence            111223333332 4445677778777 77888887777777764  21 00    1123689999999999998887766


Q ss_pred             HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHH
Q 035507          568 WAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLE  647 (684)
Q Consensus       568 ~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~  647 (684)
                      ..|.-++..-...    =++..+++.|.+.|.+..+-|+..|+.++..+++.+--.+.          +.     ...++
T Consensus       639 dsI~gvsi~VG~r----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~----------~v-----~~i~~  699 (1431)
T KOG1240|consen  639 DSIVGVSIFVGWR----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP----------AV-----KDILQ  699 (1431)
T ss_pred             hhccceEEEEeee----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH----------HH-----HHHHH
Confidence            6665444311111    02455788888899999999999999999999988754431          11     12244


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHH
Q 035507          648 KIENLQSHDNNEIHEKSVKILET  670 (684)
Q Consensus       648 ~L~~L~~~~~~~i~~~a~~ii~~  670 (684)
                      .+.-|..|+|.=|++.+..+|..
T Consensus       700 ~v~PlL~hPN~WIR~~~~~iI~~  722 (1431)
T KOG1240|consen  700 DVLPLLCHPNLWIRRAVLGIIAA  722 (1431)
T ss_pred             hhhhheeCchHHHHHHHHHHHHH
Confidence            56667889999998888877754

>PF05536 Neurochondrin: Neurochondrin

Probab=97.75  E-value=0.003  Score=69.70  Aligned_cols=234  Identities=18%  Similarity=0.171  Sum_probs=161.1

Q ss_pred             hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC---CchhHhhcCCHHHHHHHhccC------CchHHHHHHHHHHHHhcc
Q 035507          336 VPIFVKLLASPSDDVREQAVWALGNVAADSSG---CRDLVLSEGALIPLLAQLNEH------TELSMLRIATTTLSNLCR  406 (684)
Q Consensus       336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~---~r~~i~~~g~l~~Ll~~L~~~------~~~~v~~~a~~~L~nL~~  406 (684)
                      +..-+.+|++.+.+-+-.++..+.++....+.   .++.+.+.=+..-+-++|...      +....+.-++..|+.+|+
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            55667777777766666677777777765542   223455555555666666432      335677789999999999


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcH-HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHH
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDE-QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV  485 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  485 (684)
                      .+.........+-+|.++..+...+. ++...++.+|..++  ..++..+.+++.|.++.|.+.+.+ .+.....|+.++
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia--s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA--SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH--cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            65444455667889999999987776 99999999999999  667778889999999999999987 666788999999


Q ss_pred             HHHHcCChhh-----HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHH-----HHHHHHhCCHHHHHHHh
Q 035507          486 GNIVMGDDFQ-----TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ-----IQAVIDAGLIGPLVNLL  555 (684)
Q Consensus       486 ~nl~~~~~~~-----~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~l~~~g~l~~Li~ll  555 (684)
                      .+++......     .+.+  ..+++.+-..+... ....+-+++..|+++....+..     ...-.-..+...+..++
T Consensus       164 ~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            9987654411     1111  13456666666655 5567888899999887644211     11112233566667777


Q ss_pred             ccC-CHhHHHHHHHHHHHhhc
Q 035507          556 QNA-EFDIKEEAAWAISNASS  575 (684)
Q Consensus       556 ~~~-~~~v~~~a~~aL~nl~~  575 (684)
                      ++. .+.-|..|......+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            765 66667777776666654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.75  E-value=0.005  Score=66.49  Aligned_cols=262  Identities=15%  Similarity=0.133  Sum_probs=174.0

Q ss_pred             HHhcCCCCcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC
Q 035507          275 KLLSIESMPIEEVIESGVVPRFVEFL---------MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS  345 (684)
Q Consensus       275 ~l~s~~~~~~~~ii~~g~i~~Lv~lL---------~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~  345 (684)
                      +++++++...+.+.....+..|.++-         ....++.+..+|++||.|+...++..|..+++.|..+.++..|+.
T Consensus         6 RiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~   85 (446)
T PF10165_consen    6 RILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKN   85 (446)
T ss_pred             HHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHc
Confidence            34666665666666666677776665         333348999999999999999999999999999999999999987


Q ss_pred             C-----ChHHHHHHHHHHHHhhCCCCCCchhHhh-cCCHHHHHHHhcc---------C-------CchHHHHHHHHHHHH
Q 035507          346 P-----SDDVREQAVWALGNVAADSSGCRDLVLS-EGALIPLLAQLNE---------H-------TELSMLRIATTTLSN  403 (684)
Q Consensus       346 ~-----~~~v~~~a~~~L~nLa~~~~~~r~~i~~-~g~l~~Ll~~L~~---------~-------~~~~v~~~a~~~L~n  403 (684)
                      .     +.++.--..+.|--++...+..+..+.+ .+++..++..+..         .       .+......++.++.|
T Consensus        86 ~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFN  165 (446)
T PF10165_consen   86 YSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFN  165 (446)
T ss_pred             ccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHH
Confidence            5     6778778888887777766666665554 4666666666531         0       134556678888888


Q ss_pred             hccCCCCCCh----hhhhchHHHHHHHh---c--CCcHHHHHHHHHHHHhhccCCChHH-----------HHHHHHhchH
Q 035507          404 LCRGKPRPLF----DQVRPALPALAQLI---H--SNDEQVLTDACWALFGLSGDRNNDK-----------IQAVIEAGVC  463 (684)
Q Consensus       404 L~~~~~~~~~----~~~~~~l~~L~~lL---~--~~d~~v~~~al~~L~~L~~~~~~~~-----------~~~~~~~g~l  463 (684)
                      +....+....    .....++..+..++   .  .+......+++.+|.++- -.....           .........+
T Consensus       166 it~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp-l~~~~~l~~~~~~~~~~~~~~~~~~~v  244 (446)
T PF10165_consen  166 ITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP-LECLDSLLSPKFQQSSLFPEGDNMDVV  244 (446)
T ss_pred             hhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC-hHHHhhhhcccCCcccccCCCCChHHH
Confidence            8777643332    23345555555552   1  123566778888888774 111111           0001122355


Q ss_pred             HHHHHhcCC-----C---CcccHhHHHHHHHHHHcCChhhHHHHHh----------------cCChHHHHHHhccCCChh
Q 035507          464 GRLVELLGH-----P---SPSVLTPALWTVGNIVMGDDFQTQCIIN----------------HGAVPCLLALLIHNHKNS  519 (684)
Q Consensus       464 ~~L~~lL~~-----~---~~~v~~~al~~L~nl~~~~~~~~~~~i~----------------~g~l~~L~~lL~~~~~~~  519 (684)
                      ..|+.+|..     .   -.....+.+.+|.+++..+...++.+..                ..+-..|+.++.++ .+.
T Consensus       245 ~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~  323 (446)
T PF10165_consen  245 ERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQ  323 (446)
T ss_pred             HHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-Cch
Confidence            666666532     1   1356778889999999877655544432                23456888899888 688


Q ss_pred             HHHHHHHHHHHHhcCChHH
Q 035507          520 IKKEVSWIISNIACGNREQ  538 (684)
Q Consensus       520 v~~~a~~~L~nl~~~~~~~  538 (684)
                      ++..++..+..+|..+...
T Consensus       324 ~k~~vaellf~Lc~~d~~~  342 (446)
T PF10165_consen  324 LKDAVAELLFVLCKEDASR  342 (446)
T ss_pred             HHHHHHHHHHHHHhhhHHH
Confidence            9999998888888755443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.74  E-value=0.00012  Score=59.73  Aligned_cols=87  Identities=30%  Similarity=0.415  Sum_probs=71.4

Q ss_pred             HHHHHHHh-cCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHH
Q 035507          420 LPALAQLI-HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQC  498 (684)
Q Consensus       420 l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~  498 (684)
                      +|.|++.+ .++++.++..++++|+.+.   .         ..+++.|..+++++++.++..|+++|+.+..        
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---D---------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---H---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence            57888888 8899999999999999765   1         1458999999999999999999999998831        


Q ss_pred             HHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          499 IINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       499 ~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                         ...++.|.+++.++.+..+|..|+++|+
T Consensus        61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ---PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               2378899999988746677999998875

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.74  E-value=7.4e-05  Score=54.88  Aligned_cols=55  Identities=27%  Similarity=0.586  Sum_probs=48.0

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507          518 NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA  573 (684)
Q Consensus       518 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl  573 (684)
                      +.+|..|+|+|++++...++..+... ..++|.|+.++.++++.||..|+|+|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999888777777644 45999999999999999999999999875

...

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.0024  Score=74.48  Aligned_cols=333  Identities=13%  Similarity=0.149  Sum_probs=191.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHH-HHHHHH--hcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhc-CCch
Q 035507          250 ILPMMVAGVWSDDNNLQLEAT-TQFQKL--LSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIAS-GTSE  325 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~-~~L~~l--~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~-~~~~  325 (684)
                      ....+...+.|.++..|.+++ |.|.-+  ++.. +.. ......+...+.++|.+.+ +-.|..|++.|+-+-+ ++..
T Consensus       819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~-~~v-~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~  895 (1702)
T KOG0915|consen  819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQ-PEV-VLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSS  895 (1702)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-chh-hhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCch
Confidence            456677788899999888765 444322  2222 111 1122234578889998877 7888888887765544 2333


Q ss_pred             hHHHHHhcCChHHHHHhcCCC---------ChHHHH-------------HHHHHHHHhhCCCCCCchhHhhcCCHHHHHH
Q 035507          326 NTKVVIEHDAVPIFVKLLASP---------SDDVRE-------------QAVWALGNVAADSSGCRDLVLSEGALIPLLA  383 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~~~---------~~~v~~-------------~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~  383 (684)
                      .++.+     +..|+.-|..+         +.++.+             ....=|.|||.+-.. .+.      +-.+++
T Consensus       896 ~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-PdL------VYKFM~  963 (1702)
T KOG0915|consen  896 LKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-PDL------VYKFMQ  963 (1702)
T ss_pred             hHHHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-hHH------HHHHHH
Confidence            33333     33444433211         111111             122234444433211 111      233444


Q ss_pred             HhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH
Q 035507          384 QLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC  463 (684)
Q Consensus       384 ~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l  463 (684)
                      +-+++..-.-++-|+.-++.++.............++|.|.+.=.++|+.|+.....+-.-+. ..+....+.... .++
T Consensus       964 LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li-~D~k~~vd~y~n-eIl 1041 (1702)
T KOG0915|consen  964 LANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI-TDSKKVVDEYLN-EIL 1041 (1702)
T ss_pred             HhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc-cChHHHHHHHHH-HHH
Confidence            443333334444555556666555433344455777788877777889988877766666666 433344443333 577


Q ss_pred             HHHHHhcCCCCcccHhHHHHHHHHHHcCChhh--HHHHHhcCChHHHHHHhccCCChhHHHHH---HHHHHHHhc--C--
Q 035507          464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ--TQCIINHGAVPCLLALLIHNHKNSIKKEV---SWIISNIAC--G--  534 (684)
Q Consensus       464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~--~~~~i~~g~l~~L~~lL~~~~~~~v~~~a---~~~L~nl~~--~--  534 (684)
                      .-|+.-+.+..+.+|+.+|-++..+..+.+..  .+.+-  .+...+...+++- ...||+.|   +.+|+.++.  +  
T Consensus      1042 ~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1042 DELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccc
Confidence            77888889999999999999999999987632  11111  2444555555555 66777765   455666553  1  


Q ss_pred             -ChHHHHHHHHhCCHHHHHH--HhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHH
Q 035507          535 -NREQIQAVIDAGLIGPLVN--LLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIV  606 (684)
Q Consensus       535 -~~~~~~~l~~~g~l~~Li~--ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~  606 (684)
                       +....+.+++ .++|.|+.  ++ +.-.++|+.+...+..++.........++.  ..++.|.+....-++.+.
T Consensus      1119 ~~~~~~~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1119 TNGAKGKEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred             CCcccHHHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHH
Confidence             2222233333 36777765  23 567899999999999999865544333322  256667777666555543

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.0021  Score=69.68  Aligned_cols=265  Identities=16%  Similarity=0.188  Sum_probs=165.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      |+...|.+.|++.+++.+|.-|+-.|+-.+.++...       .....+-..|..++.-.-+.|..++|-+-.....   
T Consensus       413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~---  482 (929)
T KOG2062|consen  413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN---  482 (929)
T ss_pred             cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc---
Confidence            356777777777666777777777666555543321       2244555666666666666666666665433322   


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHH--hhccC
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALF--GLSGD  448 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~--~L~~~  448 (684)
                          ..++.-++..-....-..+.+-..--++-...+.       ...+=+.+-+++.+.|+-++.....+++  +.. .
T Consensus       483 ----~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G-T  550 (929)
T KOG2062|consen  483 ----QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVG-T  550 (929)
T ss_pred             ----HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhc-c
Confidence                1123334444433334445553333232222221       1245567778888888888887766553  444 3


Q ss_pred             CChHHHHHHHHhchHHHHHHh-cCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507          449 RNNDKIQAVIEAGVCGRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI  527 (684)
Q Consensus       449 ~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~  527 (684)
                      +++         +++..|++. .++.+.++|..|.-+||-++..+++         .+|..+++|..+.++.||..|+.+
T Consensus       551 gnn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~A  612 (929)
T KOG2062|consen  551 GNN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMA  612 (929)
T ss_pred             Cch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHH
Confidence            332         466777777 6778999999999999999987774         456778888777799999999999


Q ss_pred             HHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChH
Q 035507          528 ISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK  604 (684)
Q Consensus       528 L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~  604 (684)
                      |+-.|+++....       .+..|-.+..+...-||+-|+.+++-+....++..+..  -.++.+.+...+.....+
T Consensus       613 LGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  613 LGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKHED  680 (929)
T ss_pred             HhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhhhH
Confidence            999988653221       23344444556677899999999988877555443333  233455555555554443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.015  Score=63.35  Aligned_cols=327  Identities=16%  Similarity=0.189  Sum_probs=199.8

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH-Hhc-CCCChHHHHHHHHHHHHhhCCCCCC
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV-KLL-ASPSDDVREQAVWALGNVAADSSGC  368 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li-~lL-~~~~~~v~~~a~~~L~nLa~~~~~~  368 (684)
                      ..+|.+.+.|.+.+ +-+|..|.-|+..|-...    ..++ .++ |.|+ .+| ...++..+++|...|...-.     
T Consensus       134 pl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L~-pDa-peLi~~fL~~e~DpsCkRNAFi~L~~~D~-----  201 (948)
T KOG1058|consen  134 PLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHLI-PDA-PELIESFLLTEQDPSCKRNAFLMLFTTDP-----  201 (948)
T ss_pred             hhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhhc-CCh-HHHHHHHHHhccCchhHHHHHHHHHhcCH-----
Confidence            46777788888888 789999988888777621    1111 232 3333 333 44677788888776665421     


Q ss_pred             chhHhhcCCHHHHHHHhcc--CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          369 RDLVLSEGALIPLLAQLNE--HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       369 r~~i~~~g~l~~Ll~~L~~--~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                       +     .++..+.....+  +-+..++...+..+...|...|.    .....+..+..+|.+.++.++..|..++..++
T Consensus       202 -E-----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS  271 (948)
T KOG1058|consen  202 -E-----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS  271 (948)
T ss_pred             -H-----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEcc
Confidence             1     123344333322  22455666666677777664432    23456778888999999999999999999988


Q ss_pred             cCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHH
Q 035507          447 GDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVS  525 (684)
Q Consensus       447 ~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~  525 (684)
                        .++......     ...++.++.. ++-.+..-.+.-|..+...+....+     |.+--++.+|.++ +-++|+.+.
T Consensus       272 --~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-----~l~mDvLrvLss~-dldvr~Ktl  338 (948)
T KOG1058|consen  272 --NDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-----GLIMDVLRVLSSP-DLDVRSKTL  338 (948)
T ss_pred             --CCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-----HHHHHHHHHcCcc-cccHHHHHH
Confidence              344333322     2334444422 3334444445555555533332222     4555677888888 999999999


Q ss_pred             HHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChH
Q 035507          526 WIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK  604 (684)
Q Consensus       526 ~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~  604 (684)
                      .....++. .+.+.+..+.+..+...--. =...+.+.|..-..++..++... ++...     .+++.+.+.+.+.++.
T Consensus       339 di~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-p~~aa-----tvV~~ll~fisD~N~~  411 (948)
T KOG1058|consen  339 DIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-PEVAA-----TVVSLLLDFISDSNEA  411 (948)
T ss_pred             HHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-hHHHH-----HHHHHHHHHhccCCHH
Confidence            88887765 45444444443322211111 11124456777778888877643 44333     3688899999999998


Q ss_pred             HHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 035507          605 IVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRV  676 (684)
Q Consensus       605 v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~  676 (684)
                      .-..++..+...++.-++..            ...++     ..++.+..-.+.++++-|.+|+-.|...+.
T Consensus       412 aas~vl~FvrE~iek~p~Lr------------~~ii~-----~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  412 AASDVLMFVREAIEKFPNLR------------ASIIE-----KLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHHHHHHHHHHHHHhCchHH------------HHHHH-----HHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            88888888888777654431            11111     234555556678899999999999986654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.68  E-value=0.00053  Score=67.42  Aligned_cols=187  Identities=17%  Similarity=0.104  Sum_probs=121.8

Q ss_pred             hcCCcHHHHHHHHHHHHhhccCCC--hHHHHHHHHh--chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc
Q 035507          427 IHSNDEQVLTDACWALFGLSGDRN--NDKIQAVIEA--GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH  502 (684)
Q Consensus       427 L~~~d~~v~~~al~~L~~L~~~~~--~~~~~~~~~~--g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~  502 (684)
                      -.+.|.+.+..++..|..++ .+.  ......+.+.  .++..+...+.+....+...|+.++..++.......+...+ 
T Consensus        16 ~~~~~W~~r~~al~~L~~l~-~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-   93 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLI-KGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-   93 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHH-HH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred             CCccCHHHHHHHHHHHHHHH-HcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence            35678999999999999888 444  2223333222  45567778888888889999999999999766655554432 


Q ss_pred             CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCC-HHHHHHHhccCCHhHHHHHHHHHHHhhcCCC--H
Q 035507          503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL-IGPLVNLLQNAEFDIKEEAAWAISNASSRGT--H  579 (684)
Q Consensus       503 g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~-l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~--~  579 (684)
                      .++|.|++.+.++ ...++..|..+|..++...+..      ..+ ++.+...+.+.++.+|..++..+..++....  .
T Consensus        94 ~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~  166 (228)
T PF12348_consen   94 ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS  166 (228)
T ss_dssp             HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence            5789999999888 8889999999999998864311      112 5667777888999999999999999887543  1


Q ss_pred             HHHHH-HHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          580 DQIKY-LVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       580 ~~~~~-l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      ..... ..-..+++.+..++.+++++++..+-.++..+...-+.
T Consensus       167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            11111 00133678889999999999999999999998776544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.67  E-value=0.053  Score=58.40  Aligned_cols=348  Identities=16%  Similarity=0.135  Sum_probs=193.6

Q ss_pred             HHHHHHhcCCCH---HHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-
Q 035507          252 PMMVAGVWSDDN---NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT-  327 (684)
Q Consensus       252 ~~lv~~L~s~~~---~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~-  327 (684)
                      |.+...|.+++.   ......+.++..+.... +-.+.++ ..++..+-...+...+.+....++.++..+........ 
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~-~i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTSP-QILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCCh-hHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            455566665443   44555667777755432 2222222 24445555554433346677778888888766332222 


Q ss_pred             ----HHHHhcCChHHHHHhcCC-----C--ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc----------
Q 035507          328 ----KVVIEHDAVPIFVKLLAS-----P--SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN----------  386 (684)
Q Consensus       328 ----~~i~~~g~i~~Li~lL~~-----~--~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~----------  386 (684)
                          ....+..+++.+.++...     .  ++.+.+.+...+..+...-+.-++.    ..+..+.....          
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~----~~~~~~~~lf~~~~~~~~~~~  155 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQ----EILDELYSLFLSPKSFSPFQP  155 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHHHccccccCCCCc
Confidence                223333477777776532     1  2455566666666665444321111    11333333332          


Q ss_pred             cCC-chHHHHHHHHHHHH-hccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCC--ChHHHHHHHHhc
Q 035507          387 EHT-ELSMLRIATTTLSN-LCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSGDR--NNDKIQAVIEAG  461 (684)
Q Consensus       387 ~~~-~~~v~~~a~~~L~n-L~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~--~~~~~~~~~~~g  461 (684)
                      ... ...........+.. ++.-++..........+..++.+.. ..++..+..++.+++-++ ..  .++..+     .
T Consensus       156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~Lv-NK~~~~~~l~-----~  229 (415)
T PF12460_consen  156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLV-NKWPDDDDLD-----E  229 (415)
T ss_pred             cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-cCCCChhhHH-----H
Confidence            000 00112222222222 2222222332244456777776654 456888999999999888 33  122122     2


Q ss_pred             hHHHHHHhc-CCCCcccHhHHHHHHHHHH-----cCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507          462 VCGRLVELL-GHPSPSVLTPALWTVGNIV-----MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN  535 (684)
Q Consensus       462 ~l~~L~~lL-~~~~~~v~~~al~~L~nl~-----~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  535 (684)
                      ++..+..-+ .......+..++.++.-++     ++++...+      .+..|+.++.+   +.+...|+.++.-+....
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~------~~~~L~~lL~~---~~~g~~aA~~f~il~~d~  300 (415)
T PF12460_consen  230 FLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATE------LLDKLLELLSS---PELGQQAAKAFGILLSDS  300 (415)
T ss_pred             HHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHH------HHHHHHHHhCC---hhhHHHHHHHHhhHhcCc
Confidence            334444333 3334444555555443332     34442222      45678888865   467888888888887652


Q ss_pred             hH--------HHHHHHHh----CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh
Q 035507          536 RE--------QIQAVIDA----GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP  603 (684)
Q Consensus       536 ~~--------~~~~l~~~----g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~  603 (684)
                      ++        .++.+.+.    .++|.|++-....+.+.+.....||.++..+...+.... .-..+++.+.+.|+.+|+
T Consensus       301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~~  379 (415)
T PF12460_consen  301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPDA  379 (415)
T ss_pred             HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCCH
Confidence            22        23333322    268888888888777788999999999998654332221 123478889999999999


Q ss_pred             HHHHHHHHHHHHHHhccc
Q 035507          604 KIVTVCLEGLENILKVGE  621 (684)
Q Consensus       604 ~v~~~al~~L~~il~~~~  621 (684)
                      +++..++.++..++....
T Consensus       380 ~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  380 DVLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHHHHHHHHHHHHHcCH
Confidence            999999999999998763

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.0044  Score=65.26  Aligned_cols=142  Identities=15%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchh
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL  371 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~  371 (684)
                      ..|.|-..+++.- +.++.+++++++.++..+  .....++ ..+..|-.+|.++....|-.|+++|..||...|.-  .
T Consensus       265 ~rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v  338 (898)
T COG5240         265 LRPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--V  338 (898)
T ss_pred             HHHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--e
Confidence            3455556666555 689999999999988733  1122221 34677888899999999999999999999877652  1


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      .....-+..|+    ++.+..+-..|+   ..|............-..+|.+++=+.++-.-+..+|++.|+.+.
T Consensus       339 ~vcN~evEsLI----sd~Nr~IstyAI---TtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F  406 (898)
T COG5240         339 SVCNKEVESLI----SDENRTISTYAI---TTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF  406 (898)
T ss_pred             eecChhHHHHh----hcccccchHHHH---HHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence            11112233333    344444444444   344333333333333333444443333444455666666666555

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.023  Score=63.61  Aligned_cols=141  Identities=16%  Similarity=0.174  Sum_probs=107.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ..+.+++.+.+.|.+++.-.-..+...+...+  ...+.   +++.+.+=+.+++ +.+|..|++.++.+-.  +    .
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~----e  123 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--K----E  123 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--H----H
Confidence            56778888788888888777777777766654  12222   4677777788888 9999999999987654  1    1


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      +. ..+++++.+++.++++.||..|+.|+.++-.-++   +.+.+.|.+..+..++ .++++.+.++|+.+|..+...
T Consensus       124 l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         124 LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence            22 2458899999999999999999999999986653   3455666665555555 889999999999999998766

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.069  Score=60.40  Aligned_cols=281  Identities=17%  Similarity=0.162  Sum_probs=173.8

Q ss_pred             CCHHHHHHhhc------CC-CCHHHHHHHHHHHHHHhcC--CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHh
Q 035507          291 GVVPRFVEFLM------RE-DYPQLQFQAAWALTNIASG--TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNV  361 (684)
Q Consensus       291 g~i~~Lv~lL~------~~-~~~~v~~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nL  361 (684)
                      |+++.+++.+.      .+ +++.-+.-|+.+++++++-  ....-+..++.-.++.+...++++.-.+|..|+|.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            56677777776      22 2356667788888888861  111222233344466666777888899999999999999


Q ss_pred             hCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC---ChhhhhchHHHHHHHhcCCcHHHHHHH
Q 035507          362 AADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP---LFDQVRPALPALAQLIHSNDEQVLTDA  438 (684)
Q Consensus       362 a~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~---~~~~~~~~l~~L~~lL~~~d~~v~~~a  438 (684)
                      +...  +.+...-..++....+.|.++.+..++-.|+-||..+..+.+..   ....+.+.++.++++.+.-+.+....+
T Consensus       490 ~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             Hhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            9443  23333344567778888877888889999999999998886433   233446666666677666555555555


Q ss_pred             HHHHH-hhccCCChHHHHHH--HHhchHHHHHHhcCC---CCccc---HhHHHHHHHHHHc------CChhhHHHHHhcC
Q 035507          439 CWALF-GLSGDRNNDKIQAV--IEAGVCGRLVELLGH---PSPSV---LTPALWTVGNIVM------GDDFQTQCIINHG  503 (684)
Q Consensus       439 l~~L~-~L~~~~~~~~~~~~--~~~g~l~~L~~lL~~---~~~~v---~~~al~~L~nl~~------~~~~~~~~~i~~g  503 (684)
                      +..+. ..+    ++.....  +-..+.....+++..   .++..   ...|..+|..+.+      ..++..+ -+...
T Consensus       568 me~iV~~fs----eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~  642 (1010)
T KOG1991|consen  568 MEKIVCKFS----EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPI  642 (1010)
T ss_pred             HHHHHHHHH----HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHH
Confidence            54442 222    1111111  111344556666653   22222   3334444433321      1222222 12334


Q ss_pred             ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHH
Q 035507          504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQ  581 (684)
Q Consensus       504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~  581 (684)
                      ++|.+-.+|.+. -.++-.+++..+.+++...++.--.+.  |+++.+.+.+.....+.-...+-++.|.+..|.+..
T Consensus       643 ~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~  717 (1010)
T KOG1991|consen  643 VLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSL  717 (1010)
T ss_pred             HHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhh
Confidence            677777777777 777888888888888764433222222  478888898888888888999999999998776543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.57  E-value=0.0006  Score=56.26  Aligned_cols=95  Identities=19%  Similarity=0.294  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 035507          520 IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ  599 (684)
Q Consensus       520 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~  599 (684)
                      .|+.+.++|+.++.+-+..+...++. ++|+++..+.+.+..+|..|+.++.|++.....+...++-+  +.+.|..+..
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence            36778888888877555555555554 89999999999999999999999999998655555554444  7889999999


Q ss_pred             CCChHHHHHHHHHHHHHHh
Q 035507          600 CADPKIVTVCLEGLENILK  618 (684)
Q Consensus       600 ~~~~~v~~~al~~L~~il~  618 (684)
                      +.++.|+..+ +.|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999987665 67777764

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.47  E-value=0.16  Score=54.02  Aligned_cols=305  Identities=12%  Similarity=0.145  Sum_probs=180.5

Q ss_pred             HHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHH
Q 035507          314 WALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSM  393 (684)
Q Consensus       314 ~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v  393 (684)
                      ++...+...+++.+..+     .|.|-..+++....|.-.+++++..++...-.  ....+ ..+..|-.+| ..+....
T Consensus       249 r~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~  319 (898)
T COG5240         249 RATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVL  319 (898)
T ss_pred             HHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHH
Confidence            33444444444433332     35555667776677888888888888755411  11111 1233444444 6677778


Q ss_pred             HHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC
Q 035507          394 LRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP  473 (684)
Q Consensus       394 ~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~  473 (684)
                      +-.|..+|..++...|...    .-+-+-+-.++.+.+..+...|+.+|..   .+.++.+..++.  .++.++.=+.++
T Consensus       320 rFsA~Riln~lam~~P~kv----~vcN~evEsLIsd~Nr~IstyAITtLLK---TGt~e~idrLv~--~I~sfvhD~SD~  390 (898)
T COG5240         320 RFSAMRILNQLAMKYPQKV----SVCNKEVESLISDENRTISTYAITTLLK---TGTEETIDRLVN--LIPSFVHDMSDG  390 (898)
T ss_pred             HHHHHHHHHHHHhhCCcee----eecChhHHHHhhcccccchHHHHHHHHH---cCchhhHHHHHH--HHHHHHHhhccC
Confidence            8899999999998765332    3344556677788888888888888765   456777766654  356666656666


Q ss_pred             CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHH
Q 035507          474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN  553 (684)
Q Consensus       474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~  553 (684)
                      -..+...|++.|++.-   +.....     .+..|...|......+.++.+..+++.+....|+....     ++..|+.
T Consensus       391 FKiI~ida~rsLsl~F---p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~  457 (898)
T COG5240         391 FKIIAIDALRSLSLLF---PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCT  457 (898)
T ss_pred             ceEEeHHHHHHHHhhC---cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHH
Confidence            5666666777666653   222221     34455555544337788889999998888766665443     4556777


Q ss_pred             HhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcch
Q 035507          554 LLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDI  633 (684)
Q Consensus       554 ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~  633 (684)
                      .+.+.+.  -+.+...|+-+-.-|.....    -...+..+.+-+--.+.-++..|+.+|.++.-..+...         
T Consensus       458 fIEDcey--~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~---------  522 (898)
T COG5240         458 FIEDCEY--HQITVRILGILGREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV---------  522 (898)
T ss_pred             HHhhcch--hHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc---------
Confidence            7765433  24455555554432210000    00123333333334466688888888887654432211         


Q ss_pred             hHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          634 NQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       634 ~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                        ..+.     ....+..+.++++.+|+++|.-.++..
T Consensus       523 --~~~s-----v~~~lkRclnD~DdeVRdrAsf~l~~~  553 (898)
T COG5240         523 --SPQS-----VENALKRCLNDQDDEVRDRASFLLRNM  553 (898)
T ss_pred             --cHHH-----HHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence              1122     234567778888999999988877654

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.47  E-value=0.014  Score=55.99  Aligned_cols=241  Identities=18%  Similarity=0.254  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHh
Q 035507          263 NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKL  342 (684)
Q Consensus       263 ~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~l  342 (684)
                      ..-++.|+-.|+++....           .+..+.+...+++ ...+.+++.+|+....           ..+++.|+..
T Consensus        19 l~~r~rALf~Lr~l~~~~-----------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~~v   75 (289)
T KOG0567|consen   19 LQNRFRALFNLRNLLGPA-----------AIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLVEV   75 (289)
T ss_pred             HHHHHHHHHhhhccCChH-----------HHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHHHH
Confidence            455666777777655432           1333344443333 3455566666666554           2456667666


Q ss_pred             cCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC------------
Q 035507          343 LAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK------------  408 (684)
Q Consensus       343 L~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~------------  408 (684)
                      |..  ..+-||..|..+|+++. +. .         .++.+-+.. +++-..+...+..++..+-...            
T Consensus        76 l~desq~pmvRhEAaealga~~-~~-~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~  143 (289)
T KOG0567|consen   76 LLDESQEPMVRHEAAEALGAIG-DP-E---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYI  143 (289)
T ss_pred             hcccccchHHHHHHHHHHHhhc-ch-h---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccc
Confidence            554  34566667777777764 21 1         122222222 4444444444444444432221            


Q ss_pred             ---CCCChhhhhchHHHHHHHhcCCc-HHH-HHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507          409 ---PRPLFDQVRPALPALAQLIHSND-EQV-LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW  483 (684)
Q Consensus       409 ---~~~~~~~~~~~l~~L~~lL~~~d-~~v-~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  483 (684)
                         |.++  ....-+.-+-..+.+.. +.. +..+...|.|+.   .++.         +-.++.-+..++.-.|..+..
T Consensus       144 SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g---~Eea---------I~al~~~l~~~SalfrhEvAf  209 (289)
T KOG0567|consen  144 SVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG---TEEA---------INALIDGLADDSALFRHEVAF  209 (289)
T ss_pred             cCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC---cHHH---------HHHHHHhcccchHHHHHHHHH
Confidence               1111  11122333333333322 222 344555555543   3333         344555566778888999999


Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhH
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDI  562 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v  562 (684)
                      ++|.+-...           .+|.|.+.|... +.+.+|.+|+.+|+.|+...           .++.|.+.+.+.++-+
T Consensus       210 VfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~~~vv  267 (289)
T KOG0567|consen  210 VFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDEERVV  267 (289)
T ss_pred             HHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCcHHHH
Confidence            999885422           577788877443 37899999999999997532           4667788888888888


Q ss_pred             HHHHHHHHHHhh
Q 035507          563 KEEAAWAISNAS  574 (684)
Q Consensus       563 ~~~a~~aL~nl~  574 (684)
                      ++.+..+|.-+-
T Consensus       268 ~esc~valdm~e  279 (289)
T KOG0567|consen  268 RESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHH
Confidence            888877776554

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.075  Score=60.64  Aligned_cols=309  Identities=16%  Similarity=0.158  Sum_probs=177.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+..+.+.+++.|..++-.|+..+.++.++.+..   ++ ..++...++++.-.+.+..=.-|+-+|+.+|...--.-..
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            5566677777889999999999999999887622   11 2244555565554333455567888899888722111111


Q ss_pred             HHhcCChHHHHHhcC--------CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHh----ccCCchHHHHHH
Q 035507          330 VIEHDAVPIFVKLLA--------SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQL----NEHTELSMLRIA  397 (684)
Q Consensus       330 i~~~g~i~~Li~lL~--------~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L----~~~~~~~v~~~a  397 (684)
                      +  ..++|.++.-|.        +....||+.|+.+.+.++......  .+  .+.+..|...|    .-+.+...++.|
T Consensus       418 l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~--~l--~p~l~~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  418 L--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS--DL--KPVLQSLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             H--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh--hh--hHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence            1  134555555442        235689999999999998544321  11  11233233332    245677888988


Q ss_pred             HHHHHHhccCCCCC----Ch-----------------------hhhhchH-HHHHHHhc----CCcHHHHHHHHHHHHhh
Q 035507          398 TTTLSNLCRGKPRP----LF-----------------------DQVRPAL-PALAQLIH----SNDEQVLTDACWALFGL  445 (684)
Q Consensus       398 ~~~L~nL~~~~~~~----~~-----------------------~~~~~~l-~~L~~lL~----~~d~~v~~~al~~L~~L  445 (684)
                      ..|+-......++.    ..                       ...++.. |.+-+++.    +=|..+++.+.++|..+
T Consensus       492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L  571 (1133)
T KOG1943|consen  492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL  571 (1133)
T ss_pred             HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence            88887665442211    00                       0001112 22223333    45889999999999998


Q ss_pred             ccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh-------hHHHHHhcC---ChHHHHH-Hhcc
Q 035507          446 SGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF-------QTQCIINHG---AVPCLLA-LLIH  514 (684)
Q Consensus       446 ~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-------~~~~~i~~g---~l~~L~~-lL~~  514 (684)
                      + .    ........+.++.++......+...+.-+.-+.+.++.+...       ..+.-+ ++   +++.+.. .+..
T Consensus       572 s-~----~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i-~~l~~ii~~~~~~~~~r  645 (1133)
T KOG1943|consen  572 S-L----TEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI-AGLLSIIPPICDRYFYR  645 (1133)
T ss_pred             H-H----hhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh-hhhhhhccHHHHHHhcc
Confidence            8 3    333345557788888887777777776665555555432210       011111 12   2222222 2222


Q ss_pred             CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       515 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      +...-++...+..+-++........+..+..+....+.+.+...+ .+|..|.++++.++.
T Consensus       646 g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  646 GQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             chHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence            212345666677777887665554444554445555555554444 788888898888875

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.0013  Score=67.77  Aligned_cols=300  Identities=14%  Similarity=0.115  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhh-----CCCCCCchhHhhcCCHHH
Q 035507          306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA-----ADSSGCRDLVLSEGALIP  380 (684)
Q Consensus       306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa-----~~~~~~r~~i~~~g~l~~  380 (684)
                      ..+|.+|..+|+.++.+-.-.+...++  ....+..-+....+.+++.+..++..+-     .+.|+.-+.-...+.+-.
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            368889999999888743333333322  2344444566688899999988887764     334432222222221111


Q ss_pred             HH------HHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHh-cCCcHHHHHHHHHHHHhhccCCChH
Q 035507          381 LL------AQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI-HSNDEQVLTDACWALFGLSGDRNND  452 (684)
Q Consensus       381 Ll------~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~~~  452 (684)
                      ++      ....++.....+..+|.+++++.... ..-+... ....+.+..-. .+++.-+...|.+++.-+. -....
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~-~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV-LHp~l  424 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDR-QTLCITFLLGCNDSKNRLVKAAASRALGVYV-LHPCL  424 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcc-hhhhHHHHhcccchHHHHHHHHHHhhceeEE-eccch
Confidence            11      11222333456777888888887654 1111111 11222222222 2344557778888887655 34433


Q ss_pred             HHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc----CChh---hHHHHHhcCChHHHHHHh--ccCCChhHHHH
Q 035507          453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM----GDDF---QTQCIINHGAVPCLLALL--IHNHKNSIKKE  523 (684)
Q Consensus       453 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~---~~~~~i~~g~l~~L~~lL--~~~~~~~v~~~  523 (684)
                      ......-......+...+.+..-..|..|.|+++||+.    +.+.   +...+.. -.+..+...-  .+..+.+|+..
T Consensus       425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~n  503 (728)
T KOG4535|consen  425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSN  503 (728)
T ss_pred             hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhH
Confidence            34434444556667777777778899999999999974    2221   3333221 1122222222  12226789999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-------CHHHHH-HHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 035507          524 VSWIISNIACGNREQIQAVIDAG-------LIGPLV-NLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC  595 (684)
Q Consensus       524 a~~~L~nl~~~~~~~~~~l~~~g-------~l~~Li-~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~  595 (684)
                      |..+|+|+..    ..+.+.+.+       -+..++ ........+|+-+||++++|+.....-.....=....+...|+
T Consensus       504 avraLgnllQ----vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~  579 (728)
T KOG4535|consen  504 AVRALGNLLQ----FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALT  579 (728)
T ss_pred             HHHHHhhHHH----HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHH
Confidence            9999999853    222222221       122222 2223457899999999999999843211100001122456666


Q ss_pred             hhccC-CChHHHHHHHHHHH
Q 035507          596 DLLQC-ADPKIVTVCLEGLE  614 (684)
Q Consensus       596 ~lL~~-~~~~v~~~al~~L~  614 (684)
                      .++.+ .+-+++..+..+|.
T Consensus       580 ~Lv~~~~NFKVRi~AA~aL~  599 (728)
T KOG4535|consen  580 SLVTSCKNFKVRIRAAAALS  599 (728)
T ss_pred             HHHHHhccceEeehhhhhhc
Confidence            66643 45455555555443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.067  Score=58.62  Aligned_cols=139  Identities=15%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc---hhHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS---ENTK  328 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~---~~~~  328 (684)
                      ..+.+.|.+++.+.+..|+..+..+.....+.-.      ++..++++.-...+.+++.. +.....+.-...   ....
T Consensus        23 ~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~------Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~~   95 (948)
T KOG1058|consen   23 DEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPS------LLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLLH   95 (948)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchH------HHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccHH
Confidence            4678889999999999999876665554432211      22333333322222455543 223333332111   1111


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      .++  =+-..+-.=|++|+.-+|-..++.|+.+=       +.=+-...++.+..+| .+...-++++|..|+..+-..
T Consensus        96 EMI--Lvcna~RkDLQHPNEyiRG~TLRFLckLk-------E~ELlepl~p~Iracl-eHrhsYVRrNAilaifsIyk~  164 (948)
T KOG1058|consen   96 EMI--LVCNAYRKDLQHPNEYIRGSTLRFLCKLK-------EPELLEPLMPSIRACL-EHRHSYVRRNAILAIFSIYKN  164 (948)
T ss_pred             HHH--HHHHHHhhhccCchHhhcchhhhhhhhcC-------cHHHhhhhHHHHHHHH-hCcchhhhhhhheeehhHHhh
Confidence            111  01123334467788888888888887761       1111223345555555 677778888888777766554

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.1  Score=60.30  Aligned_cols=235  Identities=13%  Similarity=0.050  Sum_probs=145.8

Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHhccCCCC--CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHH
Q 035507          380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPR--PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAV  457 (684)
Q Consensus       380 ~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~  457 (684)
                      .+.....++.+..+++.+...|..++..++.  .....+..+...+.+-+++.+...+...+.++..+. +..+.....+
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~-~~~~~e~~~~  735 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLL-KLLSAEHCDL  735 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HhccHHHHHH
Confidence            4445555667889999999999999988421  122233556666777777788888999999998888 5544222223


Q ss_pred             HHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc-------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507          458 IEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM-------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN  530 (684)
Q Consensus       458 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~-------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  530 (684)
                      +..-+.+.++.+ ++.+...+..|..+|-.++.       +++. ....++ ..++.+...+-.. ...+......++..
T Consensus       736 i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~  811 (1176)
T KOG1248|consen  736 IPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITH  811 (1176)
T ss_pred             HHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHH
Confidence            333344444444 77888889999888888873       1111 011111 2333333333333 33333222444444


Q ss_pred             HhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHH
Q 035507          531 IACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCL  610 (684)
Q Consensus       531 l~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al  610 (684)
                      +..........-.-.+++..+.-.+.....++++.|+.++.-++............ .-+++.+..+.++....++..+-
T Consensus       812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr  890 (1176)
T KOG1248|consen  812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVR  890 (1176)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHH
Confidence            44322121111122235556666778889999999999999999866555444322 23788888888888888999988


Q ss_pred             HHHHHHHhcc
Q 035507          611 EGLENILKVG  620 (684)
Q Consensus       611 ~~L~~il~~~  620 (684)
                      ..+..+++.-
T Consensus       891 ~LlekLirkf  900 (1176)
T KOG1248|consen  891 LLLEKLIRKF  900 (1176)
T ss_pred             HHHHHHHHHh
Confidence            8888888754

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.42  E-value=0.016  Score=56.93  Aligned_cols=235  Identities=16%  Similarity=0.172  Sum_probs=146.2

Q ss_pred             HHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhc-hHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHH
Q 035507          423 LAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG-VCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCI  499 (684)
Q Consensus       423 L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g-~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~  499 (684)
                      +-++++.-++-.+.-|++++.++.  ...+.+......+ .-.+++.+++.  ....++...+.++.-++.... ..+.+
T Consensus       154 Lgkl~Q~i~~lTrlfav~cl~~l~--~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi  230 (432)
T COG5231         154 LGKLSQLIDFLTRLFAVSCLSNLE--FDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDI  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHH
Confidence            334455556667788889999988  3445555444443 44567777765  346788899999988875433 33211


Q ss_pred             Hh-cCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHH-HhCCHHHHHHHhccC--CHhHHHHHHHHHHHhh
Q 035507          500 IN-HGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVI-DAGLIGPLVNLLQNA--EFDIKEEAAWAISNAS  574 (684)
Q Consensus       500 i~-~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~-~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~  574 (684)
                      -. ...+..++++........|-+-++.++.|++. .....+..+. ..++.|...-+...+  |.+++...-..=..+.
T Consensus       231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            11 13556666766555467788899999999987 3334444333 444666555555443  5555433222211111


Q ss_pred             c---------------------CCC--------HHHHHHHHHC--CChHHHHhhccCCChH-HHHHHHHHHHHHHhcccc
Q 035507          575 S---------------------RGT--------HDQIKYLVTE--GCIKPLCDLLQCADPK-IVTVCLEGLENILKVGEA  622 (684)
Q Consensus       575 ~---------------------~~~--------~~~~~~l~~~--g~l~~L~~lL~~~~~~-v~~~al~~L~~il~~~~~  622 (684)
                      .                     ...        ..+.+.+.+.  .+++.|..+++...+. ....|+.-+..+.+..++
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE  390 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE  390 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence            1                     000        1234444433  3477788888877666 556666666666665543


Q ss_pred             cccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507          623 EKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC  673 (684)
Q Consensus       623 ~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~  673 (684)
                                   ....+...|+-+.|.+|.+|++++|.-.|.+.++..-+
T Consensus       391 -------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         391 -------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             -------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence                         34778889999999999999999999999888876643

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.053  Score=55.81  Aligned_cols=245  Identities=17%  Similarity=0.099  Sum_probs=171.4

Q ss_pred             hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC---------hHHHHHHHHhchHHHHHHhcCCCCc------ccH
Q 035507          414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN---------NDKIQAVIEAGVCGRLVELLGHPSP------SVL  478 (684)
Q Consensus       414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~---------~~~~~~~~~~g~l~~L~~lL~~~~~------~v~  478 (684)
                      .....+++.++.+|.|++.+|..+.+..+..++ +.+         ..-+..+++.++++.|++-+..-+.      .-.
T Consensus       121 lveln~V~slL~LLgHeNtDI~iavvdLLqELT-D~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv  199 (536)
T KOG2734|consen  121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELT-DEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV  199 (536)
T ss_pred             HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhh-hhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence            344678999999999999999999999999888 542         2457778888999999988865333      344


Q ss_pred             hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc
Q 035507          479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN  557 (684)
Q Consensus       479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~  557 (684)
                      ..++..+-|++.-.+.....+.+.|.+..|+.-+... .-...+..|.-+++-+...+.+....+-.-+++..+++-+.-
T Consensus       200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~  279 (536)
T KOG2734|consen  200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV  279 (536)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence            5678889999998888888888889999988855332 234466777778887777655566656666777777776531


Q ss_pred             ---C------CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCC
Q 035507          558 ---A------EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDS  628 (684)
Q Consensus       558 ---~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~  628 (684)
                         .      +.+.-.+.-.+||.+..  .+..+..+....++.-+.=+++. ....+..++..|...+-..+       
T Consensus       280 yk~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~-------  349 (536)
T KOG2734|consen  280 YKRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE-------  349 (536)
T ss_pred             hhccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC-------
Confidence               1      34455666677777776  56777777777777655545554 55567778888877664322       


Q ss_pred             CCcchhHHHHHHHHhchHHHHHHh-hcCC---------CHHHHHHHHHHHHHhcC
Q 035507          629 DIGDINQFAQLVEEAEGLEKIENL-QSHD---------NNEIHEKSVKILETYWC  673 (684)
Q Consensus       629 ~~~~~~~~~~~i~~~g~~~~L~~L-~~~~---------~~~i~~~a~~ii~~~f~  673 (684)
                          .-++|..+.+.+|+..+-.+ ...+         -.+.-++...||...|.
T Consensus       350 ----gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  350 ----GTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             ----chHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence                22478888888889888776 3222         23344566666665554

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.41  E-value=0.00018  Score=52.86  Aligned_cols=55  Identities=38%  Similarity=0.673  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHh
Q 035507          306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNV  361 (684)
Q Consensus       306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nL  361 (684)
                      +.+|..|+|+|++++...++.... ....+++.|+.+|.++++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            478999999999988766655555 4456799999999999999999999999986

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.40  E-value=0.051  Score=60.97  Aligned_cols=106  Identities=14%  Similarity=0.185  Sum_probs=86.4

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      +-.++.+.+-+++.|+.+|-.|++.+..+=      ...++ ..+++.+.+++.+++ +.+|..|+-|+.++-.-++   
T Consensus        91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~-~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld~---  159 (757)
T COG5096          91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELL-GNIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLDK---  159 (757)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHH-HHHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcCH---
Confidence            457888899999999999999999887741      12222 236789999999999 8999999999999987443   


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCC
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD  364 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~  364 (684)
                      ....+.|.+..+..++.+++|.+..+|+.+|..+...
T Consensus       160 ~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         160 DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            4556678899999999999999999999999998644

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.35  E-value=0.095  Score=56.45  Aligned_cols=304  Identities=16%  Similarity=0.117  Sum_probs=172.0

Q ss_pred             CHHHHHHHHHHHHHHhcCCC--C---cHHHHHHcCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHHhcCCchhHHHH
Q 035507          262 DNNLQLEATTQFQKLLSIES--M---PIEEVIESGVVPRFVEFLMRE----D--YPQLQFQAAWALTNIASGTSENTKVV  330 (684)
Q Consensus       262 ~~~~~~~a~~~L~~l~s~~~--~---~~~~ii~~g~i~~Lv~lL~~~----~--~~~v~~~A~~~L~~l~~~~~~~~~~i  330 (684)
                      +.+.-...+..+.+++....  .   ......+..++|.+.++....    .  ++.+-..+..++..+...-+.....-
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45566667777777766544  1   223334455888888777432    1  14555666666666665333333222


Q ss_pred             HhcCChHHHHH-----hcC-CCC--hHHHHHHHHHHH-HhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHH
Q 035507          331 IEHDAVPIFVK-----LLA-SPS--DDVREQAVWALG-NVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTL  401 (684)
Q Consensus       331 ~~~g~i~~Li~-----lL~-~~~--~~v~~~a~~~L~-nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L  401 (684)
                      +-..+...+..     -+. ..+  .......+..+. -+++-.+.+.-. .....+..++.......++..+..++.++
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~l  214 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLL  214 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            21122222220     000 001  112222222222 233333222110 11125667777776677778888888888


Q ss_pred             HHhccCCCCCChhhhhchHHHHHHHh-cCCc----HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcc
Q 035507          402 SNLCRGKPRPLFDQVRPALPALAQLI-HSND----EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPS  476 (684)
Q Consensus       402 ~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d----~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~  476 (684)
                      +.+...-+...  .....+..+...+ ...+    +....-..|...-+.-++++...      .++..|+.++.+  +.
T Consensus       215 a~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--~~  284 (415)
T PF12460_consen  215 ASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--PE  284 (415)
T ss_pred             HHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--hh
Confidence            88776532222  3344455444444 2222    33334444555444413332221      356778888877  66


Q ss_pred             cHhHHHHHHHHHHcCChhh--------HHHHHhc----CChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH
Q 035507          477 VLTPALWTVGNIVMGDDFQ--------TQCIINH----GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID  544 (684)
Q Consensus       477 v~~~al~~L~nl~~~~~~~--------~~~~i~~----g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  544 (684)
                      +...|++.++-+....+..        .+.+...    .++|.+++..... +...+.....+|+++..+.|..+-.---
T Consensus       285 ~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl~~~l  363 (415)
T PF12460_consen  285 LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVLLPEL  363 (415)
T ss_pred             hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence            7888889998888763322        2222232    3567777777766 6667888889999999877665433333


Q ss_pred             hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507          545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG  577 (684)
Q Consensus       545 ~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~  577 (684)
                      ..++|.|++.|+.++.+++..++.++..+....
T Consensus       364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            458999999999999999999999999998744

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.016  Score=59.47  Aligned_cols=222  Identities=14%  Similarity=0.098  Sum_probs=162.8

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-----C----cHHHHHHcCCHHHHHHhhcCCC-----CHHHHHHH
Q 035507          247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-----M----PIEEVIESGVVPRFVEFLMRED-----YPQLQFQA  312 (684)
Q Consensus       247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-----~----~~~~ii~~g~i~~Lv~lL~~~~-----~~~v~~~A  312 (684)
                      .+.+++.++.+|..+|.++..+.+..+..+...+-     .    .++.+++.++++.|++-+..=+     ...-...+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            34688999999999999999999998888765432     2    3566788899999999886533     12334456


Q ss_pred             HHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc----
Q 035507          313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN----  386 (684)
Q Consensus       313 ~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~----  386 (684)
                      +..+-|+..-.++....+++.|.+..|+.-+..  +...-...|..+|+-+-.++...+......+++..+++.+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            778889999899999999999988888874432  44556678888898888887766777778888888888874    


Q ss_pred             cC----CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh--HHHHHHHHh
Q 035507          387 EH----TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN--DKIQAVIEA  460 (684)
Q Consensus       387 ~~----~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~--~~~~~~~~~  460 (684)
                      ++    ...++..+...+|+.+..............++....-+++. ....+..++.+|-+.. .+++  .+...+++.
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am-~g~~gt~~C~kfVe~  360 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAM-FGPEGTPNCNKFVEI  360 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHH-hCCCchHHHHHHHHH
Confidence            11    23567788888888877776555555556666665555554 5556778888888888 6665  677777887


Q ss_pred             chHHHHHHhc
Q 035507          461 GVCGRLVELL  470 (684)
Q Consensus       461 g~l~~L~~lL  470 (684)
                      .++..++.+.
T Consensus       361 lGLrtiF~~F  370 (536)
T KOG2734|consen  361 LGLRTIFPLF  370 (536)
T ss_pred             HhHHHHHHHH
Confidence            7777666554

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.27  E-value=0.002  Score=66.31  Aligned_cols=274  Identities=18%  Similarity=0.144  Sum_probs=149.8

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcC-----CCCcHHHHHHcCCHHHHH------HhhcCCCCHHHHHHHHHHHHHHhcC
Q 035507          254 MVAGVWSDDNNLQLEATTQFQKLLSI-----ESMPIEEVIESGVVPRFV------EFLMREDYPQLQFQAAWALTNIASG  322 (684)
Q Consensus       254 lv~~L~s~~~~~~~~a~~~L~~l~s~-----~~~~~~~ii~~g~i~~Lv------~lL~~~~~~~v~~~A~~~L~~l~~~  322 (684)
                      +...+...++++++.++..+.++...     .+++.+.-...|-+-...      ...-+...+..+..++.++.+|...
T Consensus       300 I~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~  379 (728)
T KOG4535|consen  300 ICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPE  379 (728)
T ss_pred             HHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCch
Confidence            33344556788888888887776532     111212111112111000      1111111246677778888887762


Q ss_pred             CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507          323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS  402 (684)
Q Consensus       323 ~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~  402 (684)
                      ..+.-..--....+..+...-.+.+.-++..|.++++-+.-+..-..+...-..+...++..+ .+..-..+..+.|+++
T Consensus       380 ~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~Kaawtlg  458 (728)
T KOG4535|consen  380 AFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLG  458 (728)
T ss_pred             hhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhh
Confidence            211000000000111111122334555777888888877766644344444444555555555 4555678889999999


Q ss_pred             HhccCC----CCCChhhhhchHHHHHHHhc------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhc-------hHHH
Q 035507          403 NLCRGK----PRPLFDQVRPALPALAQLIH------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG-------VCGR  465 (684)
Q Consensus       403 nL~~~~----~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g-------~l~~  465 (684)
                      |++..-    |.+......-.-..+..++.      .....|..++.++|+++.     ...+.+.+.+       .+..
T Consensus       459 nITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll-----Qvlq~i~~~~~~e~~~~~~~~  533 (728)
T KOG4535|consen  459 NITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL-----QFLQPIEKPTFAEIIEESIQA  533 (728)
T ss_pred             hhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH-----HHHHHhhhccHHHHHHHHHHh
Confidence            987653    44333222111122223332      245789999999999998     3333333332       2222


Q ss_pred             HHHh-cCCCCcccHhHHHHHHHHHHcCChh-hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          466 LVEL-LGHPSPSVLTPALWTVGNIVMGDDF-QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       466 L~~l-L~~~~~~v~~~al~~L~nl~~~~~~-~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      +... ......+++-+||.+++|+..+..- ....-....+++.|..++.+..+.+||..|+.+|..-..
T Consensus       534 l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  534 LISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            2222 2235678999999999999876542 111112234678888888766588999999999987765

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.24  E-value=0.00071  Score=46.01  Aligned_cols=39  Identities=33%  Similarity=0.687  Sum_probs=35.9

Q ss_pred             chhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhh
Q 035507          324 SENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA  362 (684)
Q Consensus       324 ~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa  362 (684)
                      ++++..+.+.|+++.|+.++.++++.++..++|+|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347788889999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.023  Score=62.44  Aligned_cols=70  Identities=24%  Similarity=0.326  Sum_probs=54.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      ..+.+-.++.+.. ..+..+|+.++.++...++....     .++..|--+++++...+|-.|+++|..+|...|.
T Consensus       246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~  315 (865)
T KOG1078|consen  246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ  315 (865)
T ss_pred             HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence            4455666667666 79999999999998874433221     2678888889999999999999999999977765

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.15  E-value=0.019  Score=63.42  Aligned_cols=222  Identities=14%  Similarity=0.093  Sum_probs=149.4

Q ss_pred             CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhc
Q 035507          368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN-DEQVLTDACWALFGLS  446 (684)
Q Consensus       368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~  446 (684)
                      -|...+..|+...|+.+.. ...+..+..+..+|..    .-.-........++.+...++.. ...-...++.++.|++
T Consensus       496 ~~~~~Ik~~~~~aLlrl~~-~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLGQ-QQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             hcCccccccHHHHHHHHHH-HhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            4667778899999999884 3344666666666661    11111112234444444444422 2233456888999999


Q ss_pred             cCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh-cCChHHHHHHhccCCChhHHHHHH
Q 035507          447 GDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKNSIKKEVS  525 (684)
Q Consensus       447 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~l~~L~~lL~~~~~~~v~~~a~  525 (684)
                       ..++...+.+.+.-.++.+-.++...++..+..++..+.|+.-+..-..+.+.+ ...++.....+... +.....+++
T Consensus       571 -s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a  648 (748)
T KOG4151|consen  571 -SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA  648 (748)
T ss_pred             -CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence             777777777888878888888888999999999999999999887766666666 34566666666665 777788888


Q ss_pred             HHHHHHhcCChHHHH-HHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 035507          526 WIISNIACGNREQIQ-AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDL  597 (684)
Q Consensus       526 ~~L~nl~~~~~~~~~-~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~l  597 (684)
                      .++..|+.-....+. ..--......+..++.+.+.+++......+.|+.. +..+.+..+.....+..+...
T Consensus       649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHH
Confidence            887777664333333 22223467788889999999999999999999544 445555555555444444443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.036  Score=53.35  Aligned_cols=256  Identities=19%  Similarity=0.234  Sum_probs=157.5

Q ss_pred             HHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhH
Q 035507          294 PRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV  372 (684)
Q Consensus       294 ~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i  372 (684)
                      ..+.+.|...+ ...-+..|+..|.++...           +.+..+.+...+++..++...+.+|+....         
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~---------   65 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQD---------   65 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhcc---------
Confidence            34455554432 134566677777777762           225666666666656666677788887642         


Q ss_pred             hhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507          373 LSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN  451 (684)
Q Consensus       373 ~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~  451 (684)
                        ..+++.++..+... ..+-++..|..+|..+..          ...++.+.+..+++-.++.+.+..++.++- ..+.
T Consensus        66 --~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle-~~~~  132 (289)
T KOG0567|consen   66 --EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLE-WKDI  132 (289)
T ss_pred             --chhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHH-Hhhc
Confidence              23578888888543 456677789999998873          245677777776666777777777776665 2211


Q ss_pred             HHH----HHH--------HHhchHHHHHHhc-CCCCcc-cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCC
Q 035507          452 DKI----QAV--------IEAGVCGRLVELL-GHPSPS-VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHK  517 (684)
Q Consensus       452 ~~~----~~~--------~~~g~l~~L~~lL-~~~~~~-v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~  517 (684)
                      ...    ...        ...+-+..+-..| +...+. -|..|++.|.|+-  .++         .+..|.+-+..+ +
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~-S  200 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLADD-S  200 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcccc-h
Confidence            100    000        0001122222222 222222 2334555555542  222         244556666666 8


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 035507          518 NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC  595 (684)
Q Consensus       518 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~  595 (684)
                      .-.|.+++++++.+-...           .+|.|.+.|.+.  ++-+|.+|+.||+.++.   ++         +++.|.
T Consensus       201 alfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~  257 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLK  257 (289)
T ss_pred             HHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHH
Confidence            889999999999985432           577888877654  78899999999999974   33         466778


Q ss_pred             hhccCCChHHHHHHHHHHHHHH
Q 035507          596 DLLQCADPKIVTVCLEGLENIL  617 (684)
Q Consensus       596 ~lL~~~~~~v~~~al~~L~~il  617 (684)
                      +++.+.++-|...+..+|..+-
T Consensus       258 e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHH
Confidence            8888888777777777776443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.08  E-value=0.15  Score=57.23  Aligned_cols=233  Identities=15%  Similarity=0.105  Sum_probs=150.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHH
Q 035507          302 REDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIP  380 (684)
Q Consensus       302 ~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~  380 (684)
                      ....|.+-..|.|++...++.........-  -.+...+..+. +..+-++-.|+.+++..++...- .  -..-+++..
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl-~--~~~p~ild~  534 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL-L--SLQPMILDG  534 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceec-c--ccchHHHHH
Confidence            333477777888888877763221111110  11223333333 34556777788888877733211 1  112234556


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507          381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVI  458 (684)
Q Consensus       381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~  458 (684)
                      |+++. ...+.++......+|+..|..+|.........+.|.+..++.  ++||.+..-+-.++-.++ +. ..+.. -.
T Consensus       535 L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~-q~-~~~~g-~m  610 (1005)
T KOG2274|consen  535 LLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELL-QI-AANYG-PM  610 (1005)
T ss_pred             HHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH-HH-HHhhc-ch
Confidence            66655 556778888999999999999887777777888888777664  678888777777777777 31 11111 22


Q ss_pred             HhchHHHHHHhcCCCC----cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 035507          459 EAGVCGRLVELLGHPS----PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG  534 (684)
Q Consensus       459 ~~g~l~~L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  534 (684)
                      ....+|.+++.|..+.    ......|+..|.-+.++.+.-.-..+-..++|.+.++.-+..+......+.-+|..+...
T Consensus       611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            3357899999998765    556667778888777766644333444567888888876655778888899999988876


Q ss_pred             ChHHHHHHH
Q 035507          535 NREQIQAVI  543 (684)
Q Consensus       535 ~~~~~~~l~  543 (684)
                      +.++...--
T Consensus       691 ~~eq~~t~~  699 (1005)
T KOG2274|consen  691 TLEQLLTWH  699 (1005)
T ss_pred             CHHHHHhhc
Confidence            666655444

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.05  E-value=0.0057  Score=50.50  Aligned_cols=93  Identities=11%  Similarity=0.124  Sum_probs=67.9

Q ss_pred             HhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc
Q 035507          478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN  557 (684)
Q Consensus       478 ~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~  557 (684)
                      |..++.+|+.++.+-.......++ .+++.++..+.++ +.+||..||.+|.|++......+...+ ..+++.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            566777777777665544433332 5889999999999 999999999999999875434333222 3489999999999


Q ss_pred             CCHhHHHHHHHHHHHhh
Q 035507          558 AEFDIKEEAAWAISNAS  574 (684)
Q Consensus       558 ~~~~v~~~a~~aL~nl~  574 (684)
                      .++.||..| +.|-++.
T Consensus        80 ~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CchhHHHHH-HHHHHHh
Confidence            999987755 5555554

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.04  E-value=0.0016  Score=44.21  Aligned_cols=39  Identities=31%  Similarity=0.652  Sum_probs=35.0

Q ss_pred             hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       494 ~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      +....+++.|+++.|++++.++ ++++++.|+|+|+|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            3667788999999999999987 99999999999999963

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.22  Score=56.55  Aligned_cols=349  Identities=15%  Similarity=0.088  Sum_probs=182.8

Q ss_pred             CHHHHHHHHHHHHHHhc---CCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHH
Q 035507          262 DNNLQLEATTQFQKLLS---IESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPI  338 (684)
Q Consensus       262 ~~~~~~~a~~~L~~l~s---~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~  338 (684)
                      ++.....|++.+..+++   ... +.+...+.=+++.+...++++. -.+|..|+|++..+++.+-....  .-..++..
T Consensus       431 ~~rqkdGAL~~vgsl~~~L~K~s-~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~--~l~~ale~  506 (1010)
T KOG1991|consen  431 NPRQKDGALRMVGSLASILLKKS-PYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPN--NLSEALEL  506 (1010)
T ss_pred             ChhhhhhHHHHHHHHHHHHccCC-chHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChH--HHHHHHHH
Confidence            34455556666655543   222 2223333334555555667766 68999999999999963222111  11234566


Q ss_pred             HHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhh--cCCHHHHHHHhccCCchHHHHHHHHH-HHHhccCCCCCChh
Q 035507          339 FVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLS--EGALIPLLAQLNEHTELSMLRIATTT-LSNLCRGKPRPLFD  414 (684)
Q Consensus       339 Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~--~g~l~~Ll~~L~~~~~~~v~~~a~~~-L~nL~~~~~~~~~~  414 (684)
                      ....|. +.+-.|+-.|+.||..+..+.+.....+..  -+.++.++.+.+.. +.+........ +..++..-.+-...
T Consensus       507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-End~Lt~vme~iV~~fseElsPfA~e  585 (1010)
T KOG1991|consen  507 THNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-ENDDLTNVMEKIVCKFSEELSPFAVE  585 (1010)
T ss_pred             HHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHhhchhHHH
Confidence            666666 677789999999999998776543222221  12234444444322 22333333322 23333332333334


Q ss_pred             hhhchHHHHHHHhcC---Cc---HHHHHHHHHHHHhhcc--C---CChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507          415 QVRPALPALAQLIHS---ND---EQVLTDACWALFGLSG--D---RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW  483 (684)
Q Consensus       415 ~~~~~l~~L~~lL~~---~d---~~v~~~al~~L~~L~~--~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  483 (684)
                      ....+.....+++..   .+   .+-...|..+|..+..  .   ..++.. .-++.-+++.+-.+|++.-.++-+.++.
T Consensus       586 L~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl-~~le~~~l~vi~~iL~~~i~dfyeE~~e  664 (1010)
T KOG1991|consen  586 LCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVL-KQLEPIVLPVIGFILKNDITDFYEELLE  664 (1010)
T ss_pred             HHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            446666666777763   22   2223333333322220  0   111111 1223345666777777777788888888


Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHH-HhCCHHHHHHHhccC--C
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVI-DAGLIGPLVNLLQNA--E  559 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~-~~g~l~~Li~ll~~~--~  559 (684)
                      .+.+++...++..-.+.  |+++.+.+.+... ....-....-++.|+.. |.+.....-. ..-++.....++.+.  .
T Consensus       665 i~~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~  741 (1010)
T KOG1991|consen  665 IVSSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGE  741 (1010)
T ss_pred             HHhhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCc
Confidence            88888776654444444  4788888888887 67777888889998865 4432211110 111233333444442  2


Q ss_pred             HhHHHHHHHHHHHhhcC--CCHHHHHHHHHCCChHHHHhhcc--CCChHHHHHHHHHHHHHHhccccc
Q 035507          560 FDIKEEAAWAISNASSR--GTHDQIKYLVTEGCIKPLCDLLQ--CADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       560 ~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~g~l~~L~~lL~--~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      ..=...|+..+.-++..  |-.+++..+    .++...+-+.  ..+...+..+++.+.+-+.+.+..
T Consensus       742 D~d~~~a~kLle~iiL~~kg~~dq~ipl----f~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~l  805 (1010)
T KOG1991|consen  742 DSDCESACKLLEVIILNCKGLLDQYIPL----FLELALSRLTREVETSELRVMLLEVVINALYYNPKL  805 (1010)
T ss_pred             hHHHHHHHHHHHHHHHHhcCcHhhHhHH----HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHH
Confidence            23334455555554431  222221111    1112222222  245567777787777777666543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.39  Score=53.25  Aligned_cols=213  Identities=14%  Similarity=0.179  Sum_probs=115.8

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      +...+.+.....+...+..|+++|..++.+.. ..+....+..+        -+.+ +.+...|+-.=..+...+.+...
T Consensus       101 vtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqai--------vd~~-~avSsaalvss~hll~~~~~~vk  171 (865)
T KOG1078|consen  101 VTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAI--------VDKN-PAVSSAALVSSYHLLPISFDVVK  171 (865)
T ss_pred             hhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHe--------eccc-cccchHHHHHHhhhhcccHHHHH
Confidence            45666666666667777788888888765543 22222222222        2222 23332222211122221222222


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      ... .+    ......+.+.-+|.+|+..|..+-...     .+    ++..++..+..+....  ..|.|.+-......
T Consensus       172 rw~-ne----iqea~~s~~~m~QyHalglLyqirk~d-----rl----a~sklv~~~~~~~~~~--~~A~~~lir~~~~~  235 (865)
T KOG1078|consen  172 RWA-NE----VQEAVNSDNIMVQYHALGLLYQIRKND-----RL----AVSKLVQKFTRGSLKS--PLAVCMLIRIASEL  235 (865)
T ss_pred             HHH-Hh----hhhccCcHHHHHHHHHHHHHHHHHhhh-----HH----HHHHHHHHHccccccc--hhHHHHHHHHHHHH
Confidence            211 11    112223345578889999998884332     11    2344444442211110  01222222111111


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                      -...........+.+-..+.+.+..+...+..++.++. .........     .+..|-.+++++...+|-.|.++|..+
T Consensus       236 l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~-~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkv  309 (865)
T KOG1078|consen  236 LKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLP-NTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKV  309 (865)
T ss_pred             hhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcc-ccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            01112233566777888889999999999999999988 444433332     677788888999999999999999999


Q ss_pred             HcCCh
Q 035507          489 VMGDD  493 (684)
Q Consensus       489 ~~~~~  493 (684)
                      +...+
T Consensus       310 Am~~P  314 (865)
T KOG1078|consen  310 AMKHP  314 (865)
T ss_pred             HHhCC
Confidence            87665

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.89  E-value=0.13  Score=55.70  Aligned_cols=229  Identities=15%  Similarity=0.099  Sum_probs=146.7

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCCchhHHHHHhc-
Q 035507          259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED----YPQLQFQAAWALTNIASGTSENTKVVIEH-  333 (684)
Q Consensus       259 ~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~----~~~v~~~A~~~L~~l~~~~~~~~~~i~~~-  333 (684)
                      .+.++.+..+|+++|+|++-.++..++..++.|..+.+++.|+...    ..++.+...+.|.-++...+..+..+++. 
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~  121 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH  121 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence            3567899999999999999988877888899999999999998761    27899999999998888888888777755 


Q ss_pred             CChHHHHHhcCC-----------------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc--------C
Q 035507          334 DAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--------H  388 (684)
Q Consensus       334 g~i~~Li~lL~~-----------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--------~  388 (684)
                      +++..++..|..                 .+......++..+.|+..+.+.... -.....++.++..+..        .
T Consensus       122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~  200 (446)
T PF10165_consen  122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSP  200 (446)
T ss_pred             hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCC
Confidence            677777775531                 1334566778888899866654322 0223344555444322        1


Q ss_pred             CchHHHHHHHHHHHHhccCCC------------CCChhhhhchHHHHHHHhc----CC----cHHHHHHHHHHHHhhccC
Q 035507          389 TELSMLRIATTTLSNLCRGKP------------RPLFDQVRPALPALAQLIH----SN----DEQVLTDACWALFGLSGD  448 (684)
Q Consensus       389 ~~~~v~~~a~~~L~nL~~~~~------------~~~~~~~~~~l~~L~~lL~----~~----d~~v~~~al~~L~~L~~~  448 (684)
                      +......+++.+|.|+--...            ..........+..++.+|.    ..    -.+.....+.+|..++ .
T Consensus       201 ~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~-~  279 (446)
T PF10165_consen  201 PLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA-R  279 (446)
T ss_pred             cchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH-H
Confidence            234566777788877721110            0001111334444555443    11    2467888899999998 5


Q ss_pred             CChHHHHHHHHhc-----------------hHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507          449 RNNDKIQAVIEAG-----------------VCGRLVELLGHPSPSVLTPALWTVGNIVM  490 (684)
Q Consensus       449 ~~~~~~~~~~~~g-----------------~l~~L~~lL~~~~~~v~~~al~~L~nl~~  490 (684)
                      .+...++ .+...                 +-.+|++++.++.+.++..+...+-.++.
T Consensus       280 ~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  280 AAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             hcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            5543333 33333                 33456666666666666666666666654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=1.7  Score=50.72  Aligned_cols=220  Identities=15%  Similarity=0.148  Sum_probs=131.3

Q ss_pred             HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh---chHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh-hhHHHHHh
Q 035507          426 LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA---GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIIN  501 (684)
Q Consensus       426 lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~  501 (684)
                      ..++.+..++..+...|..++ ....  .+.....   .+...|..-+++.....+..++.++..+....+ +..+. +.
T Consensus       662 ~e~~~~~~vQkK~yrlL~~l~-~~~s--~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~-i~  737 (1176)
T KOG1248|consen  662 FENSSSTKVQKKAYRLLEELS-SSPS--GEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL-IP  737 (1176)
T ss_pred             hhccccHHHHHHHHHHHHHHh-cCCc--hhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH-HH
Confidence            334568999999999999998 5421  1111211   244556666667777889999999999987766 33332 22


Q ss_pred             cCChHHHHHHhccCCChhHHHHHHHHHHHHhc-------CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507          502 HGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-------GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS  574 (684)
Q Consensus       502 ~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~  574 (684)
                      . .++.++-.+... +...|+.|..+|..|++       ++.. ....++ .+++.+..-+......++..-+.++..+.
T Consensus       738 k-~I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  738 K-LIPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             H-HHHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            2 344444444555 88899999999988873       1111 011111 13333333333333333333245555554


Q ss_pred             c----CCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHH
Q 035507          575 S----RGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIE  650 (684)
Q Consensus       575 ~----~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~  650 (684)
                      .    ..+.+..     .++++.++.+|.+..++++..|+..+..+...-+...           ....  ....+..+-
T Consensus       814 ~e~~~~ld~~~l-----~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~-----------l~~~--~~~LL~sll  875 (1176)
T KOG1248|consen  814 QEFKNILDDETL-----EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEEC-----------LSPH--LEELLPSLL  875 (1176)
T ss_pred             HHHhccccHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHH-----------Hhhh--HHHHHHHHH
Confidence            3    1122222     2367788888999999999999999998887655432           1111  122456666


Q ss_pred             HhhcCCCHHHHHHHHHHHHHh
Q 035507          651 NLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       651 ~L~~~~~~~i~~~a~~ii~~~  671 (684)
                      .+.+.....+..++..+++++
T Consensus       876 ~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  876 ALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             HHHHhhhHHHHHHHHHHHHHH
Confidence            676666667777777776665

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.63  E-value=0.076  Score=49.76  Aligned_cols=93  Identities=17%  Similarity=0.251  Sum_probs=75.0

Q ss_pred             CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHH
Q 035507          474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN  553 (684)
Q Consensus       474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~  553 (684)
                      ++.+|..++.++|.++...+...+     ..+|.+...|.++ ++.||+.|..+|+.+...+.-.    ++..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence            367899999999999987775444     4678999999999 9999999999999997643111    12234477788


Q ss_pred             HhccCCHhHHHHHHHHHHHhhcC
Q 035507          554 LLQNAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       554 ll~~~~~~v~~~a~~aL~nl~~~  576 (684)
                      .+.+.+++++..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999875

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.63  E-value=1.8  Score=49.07  Aligned_cols=228  Identities=12%  Similarity=0.115  Sum_probs=152.3

Q ss_pred             cCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHH
Q 035507          343 LASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPA  422 (684)
Q Consensus       343 L~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~  422 (684)
                      ..+..|.+.-.+.|+++..+...+......  ...+...+..+..+..+.++..|+.++...|.  +.......+.++..
T Consensus       459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~  534 (1005)
T KOG2274|consen  459 VYQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDG  534 (1005)
T ss_pred             ccccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHH
Confidence            345667777789999998775543322221  11234445555455566777788888877772  34444455778888


Q ss_pred             HHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC--CCCcccHhHHHHHHHHHHcCChhhHHHHH
Q 035507          423 LAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG--HPSPSVLTPALWTVGNIVMGDDFQTQCII  500 (684)
Q Consensus       423 L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i  500 (684)
                      |.++......++......+|+..+ ..+++... ..++.+.|.++.+..  +++|.+...+-.++-.++.....  ..-+
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv-~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~--~g~m  610 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVV-KLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN--YGPM  610 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHh-ccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh--hcch
Confidence            888888888999999999999999 66655443 555677888777753  35666666666666666542211  1112


Q ss_pred             hcCChHHHHHHhccCCC----hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh-ccCCHhHHHHHHHHHHHhhc
Q 035507          501 NHGAVPCLLALLIHNHK----NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL-QNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       501 ~~g~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll-~~~~~~v~~~a~~aL~nl~~  575 (684)
                      ....+|.++..|..+ .    ......|...|.-+.++++.-....+-.-++|++.++. .++|.++-..|..+|..+..
T Consensus       611 ~e~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  611 QERLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HHHHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            234789999999877 4    56777788888888776544444444445788888875 45688888899999999887


Q ss_pred             CCCH
Q 035507          576 RGTH  579 (684)
Q Consensus       576 ~~~~  579 (684)
                      .+.+
T Consensus       690 ~~~e  693 (1005)
T KOG2274|consen  690 VTLE  693 (1005)
T ss_pred             cCHH
Confidence            6433

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.61  E-value=0.11  Score=48.55  Aligned_cols=93  Identities=20%  Similarity=0.228  Sum_probs=73.2

Q ss_pred             cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH
Q 035507          431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA  510 (684)
Q Consensus       431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~  510 (684)
                      |+.++..++.+++.++ ...+...+     ..++.+...|.++++.+|..|+.++..+...+--..    ...++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~-~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLC-IRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHH-HhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence            5789999999999999 44433333     467899999999999999999999999986543111    1223477788


Q ss_pred             HhccCCChhHHHHHHHHHHHHhcC
Q 035507          511 LLIHNHKNSIKKEVSWIISNIACG  534 (684)
Q Consensus       511 lL~~~~~~~v~~~a~~~L~nl~~~  534 (684)
                      .+.++ +++|+..|..++..+...
T Consensus        71 ~l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCC-CHHHHHHHHHHHHHHHHh
Confidence            88888 999999999999999864

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.60  E-value=0.0056  Score=50.57  Aligned_cols=65  Identities=15%  Similarity=0.277  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc--CCCChHHHHHHHHHHHHhhCCCCCCchhHh
Q 035507          309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL--ASPSDDVREQAVWALGNVAADSSGCRDLVL  373 (684)
Q Consensus       309 ~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL--~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~  373 (684)
                      +...+.+++|++..++...+.+.+.|++|.+++..  ...+|-+++.|++++-|++..+++.++.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            55678899999999999999999999999999964  457899999999999999999887665554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.59  E-value=0.016  Score=47.88  Aligned_cols=67  Identities=16%  Similarity=0.240  Sum_probs=56.7

Q ss_pred             cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507          477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVI  543 (684)
Q Consensus       477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~  543 (684)
                      .+...+++|+|++..++.....+.+.|++|.++....-+ .+|-+|+.|.|++.|++.++++....+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            456788999999999998899999999999999876432 3889999999999999999887766444

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.54  E-value=0.086  Score=54.28  Aligned_cols=202  Identities=11%  Similarity=0.103  Sum_probs=139.4

Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch-----hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD-----LVLSEGALIPLLAQLNEHTELSMLRIATTTLSN  403 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~-----~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n  403 (684)
                      .+...+.+..|+..|..-+-+.+..+..+.+++.......+.     .+... .-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            445568899999999998899999999999999876644332     22222 112222223333456666677777777


Q ss_pred             hccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh---chHHHHHHhcCCCCcccHhH
Q 035507          404 LCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA---GVCGRLVELLGHPSPSVLTP  480 (684)
Q Consensus       404 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~  480 (684)
                      .++...-.........+-.+.+.+..++-++..+|..++..+. ..........+..   .++.....+|.+++--++..
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~ll-t~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELL-TRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHH-HSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            7776432333333566666778888899999999999999877 5555555555555   46778889999999999999


Q ss_pred             HHHHHHHHHcCChhh---HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          481 ALWTVGNIVMGDDFQ---TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       481 al~~L~nl~~~~~~~---~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      ++..||.+.......   ++.+-+..-+..++.+|.+. +..+|-+|..++--+++
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            999999998655422   23333455688999999998 99999999999988877

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.54  E-value=0.32  Score=55.51  Aligned_cols=175  Identities=17%  Similarity=0.216  Sum_probs=114.9

Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh--HHHHHHHHhCCHHHHHHHhccCCH-
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR--EQIQAVIDAGLIGPLVNLLQNAEF-  560 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~--~~~~~l~~~g~l~~Li~ll~~~~~-  560 (684)
                      ++.+++..++...+.+++.|++..+...+..-....++..+...++|++...+  +......... ...+-.++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchh
Confidence            88899999999999999999999999999865577899999999999986321  1111111111 1222223333333 


Q ss_pred             hHHHHHHHHHHHhhcCCCH--------HHHHH--------------HHHCCChHH-HHhhcc-CCChHHHHHHHHHHHHH
Q 035507          561 DIKEEAAWAISNASSRGTH--------DQIKY--------------LVTEGCIKP-LCDLLQ-CADPKIVTVCLEGLENI  616 (684)
Q Consensus       561 ~v~~~a~~aL~nl~~~~~~--------~~~~~--------------l~~~g~l~~-L~~lL~-~~~~~v~~~al~~L~~i  616 (684)
                      +.-..|+..++.+...++.        .....              ......+.+ +..++. +..+..+.+|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            6667778888877764321        00011              111222333 444444 34567788999999988


Q ss_pred             HhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 035507          617 LKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH-DNNEIHEKSVKILETYW  672 (684)
Q Consensus       617 l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii~~~f  672 (684)
                      +....+             ++..+.+.|++..++++..+ .-.++.+.+..+++...
T Consensus       653 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  653 LEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            876433             67888999999999988433 26778888888887653

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.52  E-value=0.31  Score=49.92  Aligned_cols=197  Identities=12%  Similarity=0.119  Sum_probs=121.9

Q ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHH--HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC--Chhh
Q 035507          420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVI--EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG--DDFQ  495 (684)
Q Consensus       420 l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~--~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~--~~~~  495 (684)
                      +...+..+.......+..++..+..+. ... ...+.+.  ...++..+.+.++.+...-+..|+++++-++-.  ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l-~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRAL-SSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHH-Hhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence            333444555666888899988888776 221 1112221  123677788888877766667788877777643  2233


Q ss_pred             HHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHH--Hhcc----------CC
Q 035507          496 TQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVN--LLQN----------AE  559 (684)
Q Consensus       496 ~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~--ll~~----------~~  559 (684)
                      ...+++ .+.|.|..++.++. ...+|..++.+|+-++.   ...+.....++  .+..+..  ..+.          ++
T Consensus       123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCc
Confidence            444444 57888888887662 34566667667776543   33344432222  2331211  1111          13


Q ss_pred             HhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          560 FDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       560 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      +.+...|+.+.+-++............+ ..++.|..+|.+.+.+|+..|-++|.-+++....
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            5678888877777766545544443332 3589999999999999999999999999887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.50  E-value=0.22  Score=54.51  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507          414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD  493 (684)
Q Consensus       414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  493 (684)
                      ..+.+.+..+++...++|..|+..+|..|..+. + ....+...+-.++...+..-+.+..+.+|..|+.+|+.+-....
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~-d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~  158 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLS-D-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK  158 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHh-c-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence            356777777778888899999999999999999 4 33444445555778888888899999999999999999863222


Q ss_pred             hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507          494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII  528 (684)
Q Consensus       494 ~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L  528 (684)
                      +.     +..+...+..+++..++++||+.|...+
T Consensus       159 de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  159 DE-----ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             CC-----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            11     1235667788887776999999865433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=0.078  Score=61.08  Aligned_cols=164  Identities=15%  Similarity=0.167  Sum_probs=123.5

Q ss_pred             HHHHHHhccCC-CCCChhhhhchHHHHHHHhc----CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC-
Q 035507          398 TTTLSNLCRGK-PRPLFDQVRPALPALAQLIH----SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG-  471 (684)
Q Consensus       398 ~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~-  471 (684)
                      ..++..+|... -.........+.|.++....    .+||+++.+|.-+++.+. .-+.....     .-+|.|+..+. 
T Consensus       898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM-~iSa~fce-----s~l~llftimek  971 (1251)
T KOG0414|consen  898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLM-CISAEFCE-----SHLPLLFTIMEK  971 (1251)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHh-hhhHHHHH-----HHHHHHHHHHhc
Confidence            34444455443 11123455677888888884    568999999999999888 44433322     35788999887 


Q ss_pred             CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHH
Q 035507          472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPL  551 (684)
Q Consensus       472 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L  551 (684)
                      ++++.+|..++-++|.++-.-+...+     ..-+.|...|.+. ++.+|+.|..+|+++...+     .+--.|.++.+
T Consensus       972 sp~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eM 1040 (1251)
T KOG0414|consen  972 SPSPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEM 1040 (1251)
T ss_pred             CCCceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHH
Confidence            79999999999999999876664443     3456788888888 9999999999999997643     12235889999


Q ss_pred             HHHhccCCHhHHHHHHHHHHHhhcCCC
Q 035507          552 VNLLQNAEFDIKEEAAWAISNASSRGT  578 (684)
Q Consensus       552 i~ll~~~~~~v~~~a~~aL~nl~~~~~  578 (684)
                      ..++.+++.+++..|-..+..+...++
T Consensus      1041 A~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1041 ALCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHhhhccc
Confidence            999999999999999988888877653

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.13  Score=54.57  Aligned_cols=152  Identities=14%  Similarity=0.187  Sum_probs=110.1

Q ss_pred             HHHHHhcCCcHHHHHHHHHHHH--hhccCCChHHHHHHHHhchHHHHHHh-cCCCCcccHhHHHHHHHHHHcCChhhHHH
Q 035507          422 ALAQLIHSNDEQVLTDACWALF--GLSGDRNNDKIQAVIEAGVCGRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQTQC  498 (684)
Q Consensus       422 ~L~~lL~~~d~~v~~~al~~L~--~L~~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~  498 (684)
                      .+.+++.+.|+-.+.....+++  +.. .++         .|++..+++. ..+.+.++|..|+-+||-++..+.     
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~G-Tgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-----  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVG-TGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-----  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhc-CCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc-----
Confidence            5667788888877777665553  333 222         3577788877 778899999999999999987665     


Q ss_pred             HHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC
Q 035507          499 IINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT  578 (684)
Q Consensus       499 ~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~  578 (684)
                          ..++..+++|..++++.||...+.+|+-.|+++..+.       .+..|-.++.+...-+|+.|+.+++-+....+
T Consensus       585 ----~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n  653 (926)
T COG5116         585 ----DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCN  653 (926)
T ss_pred             ----chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence                3567778888777799999999999999888764442       24455566677888899999999999988766


Q ss_pred             HHHHHHHHHCCChHHHHhhccCC
Q 035507          579 HDQIKYLVTEGCIKPLCDLLQCA  601 (684)
Q Consensus       579 ~~~~~~l~~~g~l~~L~~lL~~~  601 (684)
                      ++....  -.++++.+.+++...
T Consensus       654 ~~Lnp~--v~~I~k~f~~vI~~K  674 (926)
T COG5116         654 PELNPN--VKRIIKKFNRVIVDK  674 (926)
T ss_pred             cccChh--HHHHHHHHHHHHhhh
Confidence            654333  223566666666543

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.51  Score=51.94  Aligned_cols=169  Identities=17%  Similarity=0.148  Sum_probs=109.2

Q ss_pred             hHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh-ccCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507          462 VCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-IHNHKNSIKKEVSWIISNIACGNREQIQ  540 (684)
Q Consensus       462 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~  540 (684)
                      +=+.+-+++.+.++-+|...+.+++---.++.       +.+++..|+.+- ++. +.+||+.|.-+|+-++..++++  
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~--  589 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQ--  589 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChhh--
Confidence            44556677788888888887776655444333       124566677764 455 8999999999999999887765  


Q ss_pred             HHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          541 AVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       541 ~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                             .|..+.+|... ++.||.-|+.||+-.+.+.....        ++..|..+..++..-|++.|+-++.-|+--
T Consensus       590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q  654 (929)
T KOG2062|consen  590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQ  654 (929)
T ss_pred             -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence                   45566777655 99999999999998887543222        233444455566666888898888877754


Q ss_pred             ccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 035507          620 GEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILE  669 (684)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~  669 (684)
                      .....         ++-..     |..+.++.+....+++.-.+--.|+.
T Consensus       655 ~t~~~---------~pkv~-----~frk~l~kvI~dKhEd~~aK~GAilA  690 (929)
T KOG2062|consen  655 QTEQL---------CPKVN-----GFRKQLEKVINDKHEDGMAKFGAILA  690 (929)
T ss_pred             ccccc---------CchHH-----HHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            32221         11111     22344566655666665555555554

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.41  E-value=0.098  Score=47.00  Aligned_cols=131  Identities=15%  Similarity=0.107  Sum_probs=99.9

Q ss_pred             HHHHHHhchHHHHHHhcCCCCc------ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC-ChhHHHHHHH
Q 035507          454 IQAVIEAGVCGRLVELLGHPSP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSW  526 (684)
Q Consensus       454 ~~~~~~~g~l~~L~~lL~~~~~------~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~  526 (684)
                      ...++..+++..|++++.++..      .+...++.++..+..+.- ..-..++..++..+........ +..+...|..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            3567788899999999977653      556667777777776543 2223445566778888887653 6789999999


Q ss_pred             HHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHH
Q 035507          527 IISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYL  585 (684)
Q Consensus       527 ~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  585 (684)
                      .|-+++..++...+.+.+.=-++.|+..++..+.+++..|...+-.+...++.+.++.+
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            99999988766666666655699999999999999999999999999888777666543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.40  E-value=0.02  Score=63.98  Aligned_cols=190  Identities=15%  Similarity=0.103  Sum_probs=128.7

Q ss_pred             ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch--------hHhh----cCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507          335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD--------LVLS----EGALIPLLAQLNEHTELSMLRIATTTLS  402 (684)
Q Consensus       335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~--------~i~~----~g~l~~Ll~~L~~~~~~~v~~~a~~~L~  402 (684)
                      +...|+.+|+.  +++-..++.++.-+..|++.++.        .+..    ..++|.+++... ..+...+.+...+|+
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCCccchhHHHHHHH
Confidence            34566666665  34455677777777766653211        1111    235677777774 555667778888999


Q ss_pred             HhccCCCCCC-hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC---cccH
Q 035507          403 NLCRGKPRPL-FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS---PSVL  478 (684)
Q Consensus       403 nL~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~  478 (684)
                      ++..+-|... ......++|.|++.|.-+|..++..++.++.-+. .....-...-++ -++|.++.+=.+++   ..+|
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l-~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL-TESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH-HhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence            9888655422 2234778899999999999999999999998777 433322222222 36788887766655   5789


Q ss_pred             hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507          479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN  530 (684)
Q Consensus       479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  530 (684)
                      ..|+.++..+++..+...-......++..|.+.|.++ ..-||++|..+=.+
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence            9999999999985553332333446788899999988 88899999876444

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.34  E-value=0.026  Score=62.38  Aligned_cols=216  Identities=13%  Similarity=0.064  Sum_probs=138.4

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .|....+.++..-..+..++.+..+|..-.+......     ..+++.+...+.....-.-..+++.+++|+++.+...+
T Consensus       503 ~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r  577 (748)
T KOG4151|consen  503 PGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR  577 (748)
T ss_pred             ccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence            3566666666666667777777777762222221111     13556666665543323445678999999999888888


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..+...-+++.+-.++...++.++..++..+.||.-.+--+...+.+...=.++........+......++.++..+...
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv  657 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSV  657 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhc
Confidence            88888777777777788889999999999999998665433334444222223333332334445555555555433333


Q ss_pred             CC--CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHh
Q 035507          408 KP--RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL  469 (684)
Q Consensus       408 ~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~l  469 (684)
                      ..  .............+..++.+.+++++...+..+.++. ....+....+.....++.+..+
T Consensus       658 ~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  658 VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchHHHHHHHH
Confidence            21  1114445666778888999999999999999999977 6666666666666666655544

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.28  E-value=0.31  Score=50.24  Aligned_cols=205  Identities=12%  Similarity=0.103  Sum_probs=144.6

Q ss_pred             HHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh-----HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          455 QAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-----TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       455 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                      +.+...+.+..|+..|..-+-+.+..+..+.+++.......     .+.+.. ..-..+..++...+++++--.+...|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence            45667789999999998888889999999999998654322     333332 212233333333225566667777777


Q ss_pred             HHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHC---CChHHHHhhccCCChHHH
Q 035507          530 NIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTE---GCIKPLCDLLQCADPKIV  606 (684)
Q Consensus       530 nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---g~l~~L~~lL~~~~~~v~  606 (684)
                      .++.. +.....++....+..+.+.++.++.++...|...+..+... .+.....+...   .....+..++.+++.-++
T Consensus       149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            77665 45667778888888999999999999999999999998874 34444444433   346678889999999999


Q ss_pred             HHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          607 TVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       607 ~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      ..++..|..++-.-...          +.....+....-+..+..|..+++..|+-.|..+..-|.
T Consensus       227 rqslkLL~ellldr~n~----------~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV  282 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNF----------NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV  282 (335)
T ss_dssp             HHHHHHHHHHHHSGGGH----------HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHH----------HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence            99999999999764332          234566777777888899999999999999999887553

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PRK14707 hypothetical protein; Provisional

Probab=96.27  E-value=2.9  Score=51.78  Aligned_cols=386  Identities=16%  Similarity=0.124  Sum_probs=219.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507          263 NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL-MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK  341 (684)
Q Consensus       263 ~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~  341 (684)
                      ......+++.-+.+...+ .+...+- .--+..++.-+ +.+++.+.+..+...-..++. ++..+..+ +..+|..++.
T Consensus       137 ~~c~~a~a~i~~~~~~~~-~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lN  212 (2710)
T PRK14707        137 GRCERAVARLARHLRRED-KARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLN  212 (2710)
T ss_pred             hHHHHHHHHHHHHhcccc-chhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHH
Confidence            344444455555544332 2222221 12234444444 334556777777777777776 44555554 4445777777


Q ss_pred             hcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH-HhccCCCCCChhhh-hc
Q 035507          342 LLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS-NLCRGKPRPLFDQV-RP  418 (684)
Q Consensus       342 lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~-nL~~~~~~~~~~~~-~~  418 (684)
                      -++. ++..-.++++..|.....+....+..+ +...+...++.|.+-++...-.+++.++. .+.+.. ....... ..
T Consensus       213 a~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q~  290 (2710)
T PRK14707        213 ALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPIN  290 (2710)
T ss_pred             HHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHHH
Confidence            6665 544444556666654443333433333 33345666777767777766666655554 454442 2222222 33


Q ss_pred             hHHHHHHHhcCCcHHHHHHHHHHHH-hhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHH
Q 035507          419 ALPALAQLIHSNDEQVLTDACWALF-GLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ  497 (684)
Q Consensus       419 ~l~~L~~lL~~~d~~v~~~al~~L~-~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  497 (684)
                      +-..+..+-..+|..+-..+...|. .+.  .+.+..+.+-..++-..|-.+-+-++..+...|...|..=...++...+
T Consensus       291 vanalNalSKwpd~~vc~~Aa~~la~rl~--~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~  368 (2710)
T PRK14707        291 VTQALNALSKWADLPVCAEAAIALAERLA--DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK  368 (2710)
T ss_pred             HHHHHhhhhcCCCchHHHHHHHHHHHHHh--ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc
Confidence            3334444445667666666555554 555  3444444333334433444444557777777777766665555555554


Q ss_pred             HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc-cCCHhHHHHHHHHHHHhhcC
Q 035507          498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ-NAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       498 ~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~-~~~~~v~~~a~~aL~nl~~~  576 (684)
                      .+ +...+..++.-+..-++..+-..|+..|..=..++++....+-..|+ ...++.++ =++..+...|+.+|..-.. 
T Consensus       369 ~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~aa~~lA~~la-  445 (2710)
T PRK14707        369 DL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKWPDLPICGQAVSALAGRLA-  445 (2710)
T ss_pred             cc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcCCcchhHHHHHHHHHHHHh-
Confidence            33 34455555555554436666677777766555566565555544444 44444444 4577888888877776655 


Q ss_pred             CCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC
Q 035507          577 GTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD  656 (684)
Q Consensus       577 ~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~  656 (684)
                      .+.+.++.|--.++...|-.+-+.+|..+...+.+.|..=+.....             +++.|.-.+....|..|-..+
T Consensus       446 ~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~P  512 (2710)
T PRK14707        446 HDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWP  512 (2710)
T ss_pred             ccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCC
Confidence            3566666665566666666677788888887777777665544322             456666666777888888888


Q ss_pred             CHHHHHHHHHHHHHhc
Q 035507          657 NNEIHEKSVKILETYW  672 (684)
Q Consensus       657 ~~~i~~~a~~ii~~~f  672 (684)
                      +...+..|..-|..-.
T Consensus       513 d~~~c~~A~~~lA~rl  528 (2710)
T PRK14707        513 DTPICAEAASALAERV  528 (2710)
T ss_pred             CcHHHHHHHHHHHHHh
Confidence            8777766666555443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.16  E-value=0.31  Score=49.88  Aligned_cols=192  Identities=16%  Similarity=0.129  Sum_probs=116.0

Q ss_pred             hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc--CCHHHHHHHhccCCchHHHHHHHHHHHHhccC--CCCC
Q 035507          336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE--GALIPLLAQLNEHTELSMLRIATTTLSNLCRG--KPRP  411 (684)
Q Consensus       336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~--g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~--~~~~  411 (684)
                      +...+..+.......|+.++..+.++...... .+.+...  -.+..+...+++... +-+..|+.++.-++-.  ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence            34445555666788888888888887755432 2333221  135556666655444 3445566666666544  2344


Q ss_pred             ChhhhhchHHHHHHHhcCCc--HHHHHHHHHHHHhhcc--CCChHHHHHHHHhchHHHHHH--hcCC----------CCc
Q 035507          412 LFDQVRPALPALAQLIHSND--EQVLTDACWALFGLSG--DRNNDKIQAVIEAGVCGRLVE--LLGH----------PSP  475 (684)
Q Consensus       412 ~~~~~~~~l~~L~~lL~~~d--~~v~~~al~~L~~L~~--~~~~~~~~~~~~~g~l~~L~~--lL~~----------~~~  475 (684)
                      .......+.|.|.+.+.+..  ..++..++.+|+-+++  ....+.....++  .+..+..  ..+.          +++
T Consensus       123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            55666888899999888654  4555666666665542  223333331112  2332211  1211          235


Q ss_pred             ccHhHHHHHHHHHHcCChhh-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          476 SVLTPALWTVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       476 ~v~~~al~~L~nl~~~~~~~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      .+...|+.+.+-+.+.-+.. ....+ ...+|.|..+|.++ +..||..|..+|.-|..
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            68889999888888766642 22222 35689999999999 99999999999887754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.06  E-value=0.76  Score=50.25  Aligned_cols=290  Identities=15%  Similarity=0.129  Sum_probs=145.6

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc
Q 035507          296 FVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE  375 (684)
Q Consensus       296 Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~  375 (684)
                      ++...+ ++ +..+..|+..+......-|+....     ++..++++..+.+..||.+|+..|..+|.+.+.....+   
T Consensus        28 il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---   97 (556)
T PF05918_consen   28 ILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---   97 (556)
T ss_dssp             HHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred             HHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence            344444 34 688889999999988877776654     57788999999999999999999999999987654433   


Q ss_pred             CCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc---CCcHHHHHHHHHHHHhhccCCChH
Q 035507          376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH---SNDEQVLTDACWALFGLSGDRNND  452 (684)
Q Consensus       376 g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~L~~~~~~~  452 (684)
                        ...|.++| +..+..-...+-.+|..+...++       .+.+..+...+.   .+|+.+++.++..|..-...-..+
T Consensus        98 --aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   98 --ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             --HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             --HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence              55777777 55555555566666666655432       344444444444   578888999887774222022111


Q ss_pred             HHH--HHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHc----CChhhHHHHHhcCChHHHHHHh------ccCCChhH
Q 035507          453 KIQ--AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM----GDDFQTQCIINHGAVPCLLALL------IHNHKNSI  520 (684)
Q Consensus       453 ~~~--~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~----~~~~~~~~~i~~g~l~~L~~lL------~~~~~~~v  520 (684)
                      ...  .-.+.-++..+-+.|.+-...--...+.+|..+-.    .+....+.+     ++.+....      ... +++.
T Consensus       168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e~  241 (556)
T PF05918_consen  168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPES  241 (556)
T ss_dssp             TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHHH
T ss_pred             HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHHH
Confidence            111  22233345566677765333223334445555543    122333333     33333332      112 3333


Q ss_pred             HHHHHHHHHH-H---hc--CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHH
Q 035507          521 KKEVSWIISN-I---AC--GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPL  594 (684)
Q Consensus       521 ~~~a~~~L~n-l---~~--~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L  594 (684)
                      ......++.. +   ..  .+.....++.+ .++|.+-.+    ..+.+-..+.++.-++..........+     ++.+
T Consensus       242 Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~-----L~~i  311 (556)
T PF05918_consen  242 IDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQL-----LPSI  311 (556)
T ss_dssp             HHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHH-----HHHH
T ss_pred             HHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHH-----HHHH
Confidence            3222222222 2   22  23344444444 477766555    456677788888888775543223332     3344


Q ss_pred             Hhhcc----C--CChH----HHHHHHHHHHHHHhccc
Q 035507          595 CDLLQ----C--ADPK----IVTVCLEGLENILKVGE  621 (684)
Q Consensus       595 ~~lL~----~--~~~~----v~~~al~~L~~il~~~~  621 (684)
                      .++|.    .  ..++    .++..+.++..+....+
T Consensus       312 ~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p  348 (556)
T PF05918_consen  312 FQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP  348 (556)
T ss_dssp             HHHHHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence            44442    2  2333    46666777776666544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.3  Score=54.64  Aligned_cols=227  Identities=10%  Similarity=0.042  Sum_probs=144.2

Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHH
Q 035507          380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIE  459 (684)
Q Consensus       380 ~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~  459 (684)
                      ..+..+ .++...++..++..++.+.+...........+++......+.+.|+-+--+|+..+..+| +.        ..
T Consensus       731 eai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc-ev--------y~  800 (982)
T KOG4653|consen  731 EAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC-EV--------YP  800 (982)
T ss_pred             HHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH-Hh--------cc
Confidence            334444 556678899999999999997655566667889999999999999999999999999998 43        33


Q ss_pred             hchHHHHHHhc-CC---CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507          460 AGVCGRLVELL-GH---PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN  535 (684)
Q Consensus       460 ~g~l~~L~~lL-~~---~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  535 (684)
                      ..++|.+.+.- ..   ..++.+...-.++++++..-.+....-.+ -++..++...+++ +...|..++..+++++.-.
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHH
Confidence            45677777743 22   11344444556677766543333222222 3556667777777 7788999999999998643


Q ss_pred             hHHHHHHHHhCCHHHHHHHhcc-CCHhHHHHHHHHHHHhhcCCCHHHHHHH--HHCCChHHHHhhccC-CChHHHHHHHH
Q 035507          536 REQIQAVIDAGLIGPLVNLLQN-AEFDIKEEAAWAISNASSRGTHDQIKYL--VTEGCIKPLCDLLQC-ADPKIVTVCLE  611 (684)
Q Consensus       536 ~~~~~~l~~~g~l~~Li~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~g~l~~L~~lL~~-~~~~v~~~al~  611 (684)
                      .......+. .++..++.+.+. +.+-+|+.|+..+..+..+-+.+....+  ...+..+.+..+... ++..++..+..
T Consensus       879 a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql  957 (982)
T KOG4653|consen  879 AFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL  957 (982)
T ss_pred             hhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            322222221 245555665554 5788999999999999886554443322  122334444444443 34444445555


Q ss_pred             HHHHHHhc
Q 035507          612 GLENILKV  619 (684)
Q Consensus       612 ~L~~il~~  619 (684)
                      ++..+-..
T Consensus       958 ~leei~a~  965 (982)
T KOG4653|consen  958 CLEEIQAA  965 (982)
T ss_pred             HHHHHHHH
Confidence            55444433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.05  E-value=0.14  Score=49.75  Aligned_cols=186  Identities=10%  Similarity=0.117  Sum_probs=123.2

Q ss_pred             cHHHHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhc-------CCCC--c---ccHhHHHHHHHHHHcCChhhHH
Q 035507          431 DEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELL-------GHPS--P---SVLTPALWTVGNIVMGDDFQTQ  497 (684)
Q Consensus       431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL-------~~~~--~---~v~~~al~~L~nl~~~~~~~~~  497 (684)
                      +++.++.|+.-|+.-- +..++....+..+ |.+..|++=+       ..+.  +   .-...|+..+..+|. +++.+.
T Consensus         8 ~~~~Re~Al~eLsk~r-~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~   85 (262)
T PF04078_consen    8 NPETRENALLELSKKR-ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM   85 (262)
T ss_dssp             SHHHHHHHHHHHHHTC-CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             CcchHHHHHHHHHHhh-hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence            6777888888888776 5556666666666 6666654433       2222  1   112345555555666 455777


Q ss_pred             HHHhcCChHHHHHHhccCC----ChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507          498 CIINHGAVPCLLALLIHNH----KNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN  572 (684)
Q Consensus       498 ~~i~~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n  572 (684)
                      .++++.+.-.|...|+...    -+.+|-.+..+++.+.. ++++.+.++.+.+++|..++.|+.++.-.|..|...+..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            8999998877888775441    24688888999999987 678889999999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHH--------CCChHHHHh-hccCCChHHHHHHHHHHHHHHhcc
Q 035507          573 ASSRGTHDQIKYLVT--------EGCIKPLCD-LLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       573 l~~~~~~~~~~~l~~--------~g~l~~L~~-lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      +..  +.....|+..        ..++..++. +...+++.+.+.++.+..++.+..
T Consensus       166 IL~--dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  166 ILL--DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHc--chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            887  3333333211        113444443 345678889999888888877654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=0.15  Score=56.99  Aligned_cols=223  Identities=10%  Similarity=0.073  Sum_probs=139.0

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcC
Q 035507          297 VEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEG  376 (684)
Q Consensus       297 v~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g  376 (684)
                      +..+.++. +.++..|+..|..+... .+....+...+++...+..|.+.++-+--+|+..+..+|..-|+        .
T Consensus       733 i~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~  802 (982)
T KOG4653|consen  733 ISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------D  802 (982)
T ss_pred             HHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------h
Confidence            33444444 67899999999999983 35556666778999999999999999988999988888755332        3


Q ss_pred             CHHHHHHHhccCC---chHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHH
Q 035507          377 ALIPLLAQLNEHT---ELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK  453 (684)
Q Consensus       377 ~l~~Ll~~L~~~~---~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~  453 (684)
                      .++-+...-.+..   ..+.+-..-.++.++.+....-.......++..++..++++|...+..++..+++++ ......
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lc-q~~a~~  881 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLC-QLLAFQ  881 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHH-HHHhhh
Confidence            4555555321111   123333344666666655433333344566777778888888888999999999999 433322


Q ss_pred             HHHHHHhchHHHHHHhcC-CCCcccHhHHHHHHHHHHcCChhhHHHHHhc---CChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          454 IQAVIEAGVCGRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINH---GAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       454 ~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~---g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                      ....+ ..++..++.+.+ +++..+|.+|+..+..+..+.....-.+...   .....+........+..++..|+.++-
T Consensus       882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le  960 (982)
T KOG4653|consen  882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE  960 (982)
T ss_pred             hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            22211 123444555543 5678899999999999988776333222211   122333333333325556666666654


Q ss_pred             HH
Q 035507          530 NI  531 (684)
Q Consensus       530 nl  531 (684)
                      .+
T Consensus       961 ei  962 (982)
T KOG4653|consen  961 EI  962 (982)
T ss_pred             HH
Confidence            44

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.97  E-value=3.2  Score=45.34  Aligned_cols=288  Identities=14%  Similarity=0.105  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507          263 NNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK  341 (684)
Q Consensus       263 ~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~  341 (684)
                      ...+..|+..++..+...+ .++..+..     ..-.++.....++.|..|...|..++.+...... ....-....   
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~iW~-----~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R~~fF~~---   74 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEEIWY-----AAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMRAEFFRD---   74 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHH-----HHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHHHHHHHH---
Confidence            3556677777777666544 33333322     2224455554468999999999999885443111 111111111   


Q ss_pred             hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC--------------------------chHHHH
Q 035507          342 LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT--------------------------ELSMLR  395 (684)
Q Consensus       342 lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~--------------------------~~~v~~  395 (684)
                      +-....++-...-+.+|..|+.++... + ..+.+..+.+...+....                          +.....
T Consensus        75 I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~  152 (464)
T PF11864_consen   75 ISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS  152 (464)
T ss_pred             HhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence            122233434445566677777665443 1 134555555555552110                          222333


Q ss_pred             HHHHHHHHhccCC-CCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcc--CCChHHHHHHHHhchHHHHHHhcC
Q 035507          396 IATTTLSNLCRGK-PRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSG--DRNNDKIQAVIEAGVCGRLVELLG  471 (684)
Q Consensus       396 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~--~~~~~~~~~~~~~g~l~~L~~lL~  471 (684)
                      .....+.|+.... .......+.+++..++.+.. +.++.....++..+-.+..  .-+.+...     .++..|.... 
T Consensus       153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~-  226 (464)
T PF11864_consen  153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV-  226 (464)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence            4445555555554 33333444555555555533 2233333444444433330  11111111     1233343332 


Q ss_pred             CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc--C---CChhHHHHHHHHHHHHhcCChHHHHHHHH-h
Q 035507          472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--N---HKNSIKKEVSWIISNIACGNREQIQAVID-A  545 (684)
Q Consensus       472 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~--~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~  545 (684)
                       ...+....+-+++.|++...-.+.       .+..|..+|.+  +   .+..+.+-|...+..+..+..++...-+. .
T Consensus       227 -~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~  298 (464)
T PF11864_consen  227 -NSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS  298 (464)
T ss_pred             -cccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence             233677788889999986443221       34567777722  1   14556678888888887654222222221 1


Q ss_pred             --CCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          546 --GLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       546 --g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                        -++|.+...++..+..+-.+....+.++..
T Consensus       299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  299 PSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence              278899999998888777788888888873

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=2.6  Score=46.82  Aligned_cols=300  Identities=16%  Similarity=0.079  Sum_probs=162.9

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHhc--CCchhHHHHHhcCChHH
Q 035507          268 EATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE-------DYPQLQFQAAWALTNIAS--GTSENTKVVIEHDAVPI  338 (684)
Q Consensus       268 ~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~-------~~~~v~~~A~~~L~~l~~--~~~~~~~~i~~~g~i~~  338 (684)
                      +|+..+..+.+..++.    --.|+++.++..|...       +++.-.+-|++.+.++.+  ..+....-+.+.-+++.
T Consensus       389 aal~fl~~~~sKrke~----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         389 AALFFLIISKSKRKEE----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHHhcccchh----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            3455555544443321    1258899999998431       123344456677777665  34444555666667788


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC--Chhhh
Q 035507          339 FVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP--LFDQV  416 (684)
Q Consensus       339 Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~--~~~~~  416 (684)
                      ++..++++.--++.+|+..++.+..+-   .+...-..+.+....+++ +.+..+.-.|+-|+.-+..+....  -...+
T Consensus       465 v~P~f~s~ygfL~Srace~is~~eeDf---kd~~ill~aye~t~ncl~-nn~lpv~ieAalAlq~fi~~~q~h~k~sahV  540 (970)
T COG5656         465 VIPAFRSNYGFLKSRACEFISTIEEDF---KDNGILLEAYENTHNCLK-NNHLPVMIEAALALQFFIFNEQSHEKFSAHV  540 (970)
T ss_pred             hhHhhcCcccchHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHHhchhhhHHHHhhh
Confidence            888888888889999999999995443   444444456677777774 467778888888888888775211  11223


Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHH-hhccCCChHHHHHHHHh---chHHHHHHhcCCCC------cccHhHHHHHHH
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALF-GLSGDRNNDKIQAVIEA---GVCGRLVELLGHPS------PSVLTPALWTVG  486 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~-~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~------~~v~~~al~~L~  486 (684)
                      .+.++.++.+-+.-+-++...+...+. +.+ +.-......+...   .++.....++..++      .+-+..|...|.
T Consensus       541 p~tmekLLsLSn~feiD~LS~vMe~fVe~fs-eELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~  619 (970)
T COG5656         541 PETMEKLLSLSNTFEIDPLSMVMESFVEYFS-EELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR  619 (970)
T ss_pred             hHHHHHHHHhcccccchHHHHHHHHHHHHhH-HhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence            444444444444444455554444432 222 1111111111111   12223333333321      123344444444


Q ss_pred             HHHc------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCC-
Q 035507          487 NIVM------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAE-  559 (684)
Q Consensus       487 nl~~------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~-  559 (684)
                      .+.+      ..+...+. +.....|.+-=++.+. -.+.-.+|+..+-+.+-...+. . -+.-|+.+.+.+++.+.. 
T Consensus       620 T~~smiLSlen~p~vLk~-le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI-~-pimwgi~Ell~~~l~~~~t  695 (970)
T COG5656         620 TIESMILSLENRPLVLKY-LEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEI-E-PIMWGIFELLLNLLIDEIT  695 (970)
T ss_pred             HHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHh-h-hhhhHHHHHHHhcccccch
Confidence            4321      11212221 2234556665666666 6677778888877765432121 1 122345555555555554 


Q ss_pred             HhHHHHHHHHHHHhhcCCCHH
Q 035507          560 FDIKEEAAWAISNASSRGTHD  580 (684)
Q Consensus       560 ~~v~~~a~~aL~nl~~~~~~~  580 (684)
                      .....+++-++.|+...|..+
T Consensus       696 ~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         696 AVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             hhhHHHHHHHHHHHHHhCccc
Confidence            366788999999998866433

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.75  E-value=0.017  Score=49.11  Aligned_cols=71  Identities=14%  Similarity=0.249  Sum_probs=60.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhh
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA  362 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa  362 (684)
                      ++..|+++|..++++.....|+.=|+.++...|..+..+-+.|+-..+..++.+++++|+.+|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            57889999965555888889999999999989999998888899999999999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.74  E-value=0.4  Score=45.81  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHhc-CCchhHHHHHhcCChHH
Q 035507          264 NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR----EDYPQLQFQAAWALTNIAS-GTSENTKVVIEHDAVPI  338 (684)
Q Consensus       264 ~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~----~~~~~v~~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~  338 (684)
                      .-...|+..+.-++|. ++.+..+.++.+--.|-.+|..    ...+-+|..++.+++.+.. ++.+....+...++||.
T Consensus        94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl  172 (293)
T KOG3036|consen   94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL  172 (293)
T ss_pred             chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence            3344555555555554 5677778888776666666643    2346899999999999998 45556667778999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh-------cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          339 FVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS-------EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       339 Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~-------~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .++.+..++..-+.-|..++..|-.++....-....       ...+..++..+.+.++..+.++++.+..+|+.+.
T Consensus       173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999998887653221111       1124445555557788899999999999999874

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.71  E-value=0.21  Score=56.16  Aligned_cols=155  Identities=14%  Similarity=0.116  Sum_probs=114.0

Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHH--hchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIE--AGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF  494 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  494 (684)
                      ..++|.+++.+...+..++..-+.+|+++. .+-+.  +.+..  ..++|.|++.|.-++..++..+++++..+....+.
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl-~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVL-TNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHH-hcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence            778899999988777888888888999888 44443  22222  25788999999999999999999999988765543


Q ss_pred             hHHHHHhcCChHHHHHHhccCCC--hhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507          495 QTQCIINHGAVPCLLALLIHNHK--NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN  572 (684)
Q Consensus       495 ~~~~~i~~g~l~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n  572 (684)
                      ....=+ ..++|.+..+-.+..+  ..+|..|..++..++...|...-......++..|+..|+++...+|++|..+=.+
T Consensus       943 L~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  943 LQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             cchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            222111 2467887777666521  5789999999999998444444444455688899999999888999999877555


Q ss_pred             hhc
Q 035507          573 ASS  575 (684)
Q Consensus       573 l~~  575 (684)
                      ...
T Consensus      1022 W~~ 1024 (1030)
T KOG1967|consen 1022 WYM 1024 (1030)
T ss_pred             hhh
Confidence            443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.53  E-value=0.33  Score=43.67  Aligned_cols=126  Identities=17%  Similarity=0.137  Sum_probs=96.3

Q ss_pred             chhHhhcCCHHHHHHHhccCCc-----hHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC--cHHHHHHHHHH
Q 035507          369 RDLVLSEGALIPLLAQLNEHTE-----LSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN--DEQVLTDACWA  441 (684)
Q Consensus       369 r~~i~~~g~l~~Ll~~L~~~~~-----~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~al~~  441 (684)
                      ...+.+.+++..|+..+.++..     .++...++.++..|-...--.........+..++..+...  |..+...++..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            3556778899999999976653     4778888899988887753233333355666666666643  68999999999


Q ss_pred             HHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507          442 LFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ  495 (684)
Q Consensus       442 L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  495 (684)
                      |-++. .+++...+.+.+.=-++.|+..|+..++.++..|+..+..+-...++.
T Consensus        84 LEs~V-l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   84 LESIV-LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHH-hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            99999 777776777777667899999999999999999999888877655543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.52  E-value=0.4  Score=49.05  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             chHHHH-HHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHH
Q 035507          461 GVCGRL-VELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQ  538 (684)
Q Consensus       461 g~l~~L-~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~  538 (684)
                      +++..+ ...++++++.+|..|++++|-.+--+.....     ..++.+...+..+ +..++..|+.++..+.. +..+.
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            344443 4778899999999999999999876664433     2467788888777 89999999999999875 33333


Q ss_pred             HHHHH-------HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507          539 IQAVI-------DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG  577 (684)
Q Consensus       539 ~~~l~-------~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~  577 (684)
                      .....       ...++..+.+.+.+.+++++..|+.+++.+...+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            32222       2457888899999999999999999999998755

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.47  E-value=0.023  Score=48.23  Aligned_cols=72  Identities=19%  Similarity=0.287  Sum_probs=60.6

Q ss_pred             chHHHHHHhc-CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          461 GVCGRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       461 g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      .++..|+.+| .+.++.+..-||.=||.++...|..+..+-+.|+-..++.++.++ +++||.+|..++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            3678899999 445777888899999999999998888777889999999999999 99999999999887653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.46  E-value=2.1  Score=41.16  Aligned_cols=139  Identities=9%  Similarity=0.130  Sum_probs=98.9

Q ss_pred             HhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc----CCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHH
Q 035507          478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH----NHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLV  552 (684)
Q Consensus       478 ~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li  552 (684)
                      ...|+..+..++++.+ .+..++++.+--.+..+|..    ...+.+|-.+..+++.+.. ++.+.+..+...+++|..+
T Consensus        96 VcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            4456666666666554 66778887776666666643    2256789999999999987 6777888899999999999


Q ss_pred             HHhccCCHhHHHHHHHHHHHhhcCCCHHHHHH-------HHH-CCChHHHH-hhccCCChHHHHHHHHHHHHHHhc
Q 035507          553 NLLQNAEFDIKEEAAWAISNASSRGTHDQIKY-------LVT-EGCIKPLC-DLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       553 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-------l~~-~g~l~~L~-~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      +.+..++...+..|...+..+....  ....|       +.. .-++..++ .+.+.+++.+...++.+..++.+.
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999988632  22222       111 11233333 344567888888888887777654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.44  E-value=0.81  Score=50.06  Aligned_cols=269  Identities=12%  Similarity=0.086  Sum_probs=131.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      .++..++.+...+|..+|..|+..|-.++...+..+..     ++..|+++|.+++ +.....+-++|..+...++.   
T Consensus        59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~tdd-~~E~~~v~~sL~~ll~~d~k---  129 (556)
T PF05918_consen   59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQTDD-PVELDAVKNSLMSLLKQDPK---  129 (556)
T ss_dssp             HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT----HHHHHHHHHHHHHHHHH-HH---
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhccc-HHHHHHHHHHHHHHHhcCcH---
Confidence            36788888888999999999999998877665555554     4578999999877 66666677788777774443   


Q ss_pred             HHHhcCChHHHHHhcC---CCChHHHHHHHHHHHHhh-CCCCCCch--hHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507          329 VVIEHDAVPIFVKLLA---SPSDDVREQAVWALGNVA-ADSSGCRD--LVLSEGALIPLLAQLNEHTELSMLRIATTTLS  402 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~---~~~~~v~~~a~~~L~nLa-~~~~~~r~--~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~  402 (684)
                           +.+..+...+.   +++..+|+.++..|..=. .-.++.-.  .=.+.-++..+-..| .+-..+=......+|.
T Consensus       130 -----~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL-~DVTaeEF~l~m~lL~  203 (556)
T PF05918_consen  130 -----GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL-QDVTAEEFELFMSLLK  203 (556)
T ss_dssp             -----HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHH
Confidence                 23444454443   467889999998875432 22111100  001111222333334 3322233344555666


Q ss_pred             HhccCCCCCChhhhhchHHHHHHHh------cCCcHHHHHHHHHHHH----hhccCCC--hHHHHHHHHhchHHHHHHhc
Q 035507          403 NLCRGKPRPLFDQVRPALPALAQLI------HSNDEQVLTDACWALF----GLSGDRN--NDKIQAVIEAGVCGRLVELL  470 (684)
Q Consensus       403 nL~~~~~~~~~~~~~~~l~~L~~lL------~~~d~~v~~~al~~L~----~L~~~~~--~~~~~~~~~~g~l~~L~~lL  470 (684)
                      .+-.............+++.+....      ...|++.....+.++.    ..+ .+.  ......+. ..++|.+-.+ 
T Consensus       204 ~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs-~~v~Sskfv~y~~-~kvlP~l~~l-  280 (556)
T PF05918_consen  204 SLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS-RGVSSSKFVNYMC-EKVLPKLSDL-  280 (556)
T ss_dssp             TSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B-TTB--HHHHHHHH-HHTCCCTT---
T ss_pred             hCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc-CCCChHHHHHHHH-HHhcCChhhC-
Confidence            6555322223333344555555433      2345565555544443    333 221  12222222 2344433333 


Q ss_pred             CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc----C---C--ChhHHHHHHHHHHHHhcCChHHHHH
Q 035507          471 GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH----N---H--KNSIKKEVSWIISNIACGNREQIQA  541 (684)
Q Consensus       471 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~----~---~--~~~v~~~a~~~L~nl~~~~~~~~~~  541 (684)
                         .+..+...+.+++.++......-    ....++.+..+|..    .   +  +....+....++.+++...++....
T Consensus       281 ---~e~~kl~lLk~lAE~s~~~~~~d----~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~  353 (556)
T PF05918_consen  281 ---PEDRKLDLLKLLAELSPFCGAQD----ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNF  353 (556)
T ss_dssp             ------HHHHHHHHHHHHHTT----T----HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred             ---ChHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence               55677888888888886554211    11234555555521    1   0  2244556677888888776665443


Q ss_pred             H
Q 035507          542 V  542 (684)
Q Consensus       542 l  542 (684)
                      +
T Consensus       354 l  354 (556)
T PF05918_consen  354 L  354 (556)
T ss_dssp             -
T ss_pred             H
Confidence            3

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.42  E-value=0.84  Score=52.14  Aligned_cols=195  Identities=17%  Similarity=0.124  Sum_probs=119.0

Q ss_pred             HHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHH--HHHHHhcCCcH-H
Q 035507          357 ALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP--ALAQLIHSNDE-Q  433 (684)
Q Consensus       357 ~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~--~L~~lL~~~d~-~  433 (684)
                      +|+++....+.....+.+.|++..+...+......++...+...+.+++...+..........+.  .+..++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            56677777777778888999999999999877788899999999999998763333322222222  33333333333 6


Q ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC-hhhHHHHHhcCChHHHHHHh
Q 035507          434 VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD-DFQTQCIINHGAVPCLLALL  512 (684)
Q Consensus       434 v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~~i~~g~l~~L~~lL  512 (684)
                      .-..|+..++.+. ...++..                   ....+..+...+......- ........+.-+.+.+..++
T Consensus       574 rsY~~~siLa~ll-~~~~~~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLL-SDSEKTT-------------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHH-hCCCcCc-------------------cccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHh
Confidence            6666777777666 3222111                   1122333333333322221 11222222322333255566


Q ss_pred             ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHH
Q 035507          513 IHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAIS  571 (684)
Q Consensus       513 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~  571 (684)
                      ..+..+..+.-|.|++.+++...++..+.+.+.|+++.+.+.-... ..+++.++...+.
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            5554778899999999999998888888888999998888765433 3444555544443

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.42  E-value=0.5  Score=49.83  Aligned_cols=215  Identities=13%  Similarity=0.192  Sum_probs=129.1

Q ss_pred             HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHH---HhhCC---CCCCchhHhh-cCCHHHHHH
Q 035507          311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALG---NVAAD---SSGCRDLVLS-EGALIPLLA  383 (684)
Q Consensus       311 ~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~---nLa~~---~~~~r~~i~~-~g~l~~Ll~  383 (684)
                      .|+..|-.+....+.....+.+.+++..+++.+..+       +-.++.   +...+   .+..+..... ..+      
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------   69 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE-------VDFALEENKNEEAGSGIPPEYKESSVDGYSI------   69 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH-------HHHHHhcccccCCCCCCCCCccccccccccc------
Confidence            467777777777777778888899999999977542       222222   11100   0111111110 000      


Q ss_pred             HhccCCchHHHHHHHHHHHHhcc-CC--CCCChhhh--hchHHHHHHHhcCCc---HHHHHHHHHHHHhhccCCChHHHH
Q 035507          384 QLNEHTELSMLRIATTTLSNLCR-GK--PRPLFDQV--RPALPALAQLIHSND---EQVLTDACWALFGLSGDRNNDKIQ  455 (684)
Q Consensus       384 ~L~~~~~~~v~~~a~~~L~nL~~-~~--~~~~~~~~--~~~l~~L~~lL~~~d---~~v~~~al~~L~~L~~~~~~~~~~  455 (684)
                         ........+..+.++..+.. +.  ........  ..++..|...+.+..   +.+...|+..+..+. ...+-...
T Consensus        70 ---~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I-~nePT~~~  145 (379)
T PF06025_consen   70 ---SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFI-HNEPTSFS  145 (379)
T ss_pred             ---CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHH-hcCCchhH
Confidence               01112344555555565555 22  11111122  344555666676553   788999999999999 88888899


Q ss_pred             HHHHhchHHHHHHhcC-C---CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh--HHH-HHHHHH
Q 035507          456 AVIEAGVCGRLVELLG-H---PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS--IKK-EVSWII  528 (684)
Q Consensus       456 ~~~~~g~l~~L~~lL~-~---~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~--v~~-~a~~~L  528 (684)
                      .+.++|+.+.+++.+. .   ++.++....-.+++.+|- +....+.+.+.+.++.+.+++.++ +.-  ++. ..+..+
T Consensus       146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~l  223 (379)
T PF06025_consen  146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNL  223 (379)
T ss_pred             HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHH
Confidence            9999999999999887 3   233444444456666665 445788888999999999999876 321  222 344444


Q ss_pred             HH----HhcCChHHHHHHHH
Q 035507          529 SN----IACGNREQIQAVID  544 (684)
Q Consensus       529 ~n----l~~~~~~~~~~l~~  544 (684)
                      ++    +.++.|.-+..+++
T Consensus       224 G~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  224 GNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHHHHHccCHHHHHHHHH
Confidence            43    45566655555444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.41  E-value=1.2  Score=47.06  Aligned_cols=269  Identities=13%  Similarity=0.097  Sum_probs=141.3

Q ss_pred             hcCChHHHHHhc----CCCChHHHHHHHHHHHHhhCCCCC-CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          332 EHDAVPIFVKLL----ASPSDDVREQAVWALGNVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       332 ~~g~i~~Li~lL----~~~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      +.|.+..++..+    .+++..++..|+..|+|.+...|. +|..  ..-.+..++.-|.+..+.++.-.+..+|..+..
T Consensus       252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~  329 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE  329 (533)
T ss_pred             ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence            345555555443    457889999999999999988543 2221  222466777777677778888888888877665


Q ss_pred             CCCCCChh-hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH---HHHHHhcCCCCcccHhHHH
Q 035507          407 GKPRPLFD-QVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC---GRLVELLGHPSPSVLTPAL  482 (684)
Q Consensus       407 ~~~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l---~~L~~lL~~~~~~v~~~al  482 (684)
                      ........ ..-.+.-.+..+..+.+++.+..+...++.++ .......+.+....+.   ..++-.++++++. ...||
T Consensus       330 ~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~-~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~AC  407 (533)
T KOG2032|consen  330 KASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALA-KLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARAC  407 (533)
T ss_pred             hhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHH-HHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHH
Confidence            54222211 11233334556777899999999988887776 3222221212111222   2333334555554 34566


Q ss_pred             HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh-hHHHH-HHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCH
Q 035507          483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN-SIKKE-VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF  560 (684)
Q Consensus       483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~-~v~~~-a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~  560 (684)
                      +.....+.-+- ..+...  +.++..   + +. +. ..+.. .-| -..+....++....+...     ...+++..-+
T Consensus       408 r~~~~~c~p~l-~rke~~--~~~q~~---l-d~-~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t~-----~~~~f~sswe  473 (533)
T KOG2032|consen  408 RSELRTCYPNL-VRKELY--HLFQES---L-DT-DMARFQAFYNQW-CIQLNHIHPDILMLLLTE-----DQHIFSSSWE  473 (533)
T ss_pred             HHHHHhcCchh-HHHHHH--HHHhhh---h-HH-hHHHHHHHHHHH-HHHHhhhCHHHHHHHHHh-----chhheecchH
Confidence            66655443221 222211  122211   1 11 11 11111 111 111222233333332221     2223333344


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507          561 DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       561 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~  618 (684)
                      .++..|...-.+....-.+..+.+.-..-+...+..+...+-|++...+.+++..+..
T Consensus       474 ~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  474 QVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5555555555555443344444443333456677777788899999999999887654

>PRK14707 hypothetical protein; Provisional

Probab=95.39  E-value=11  Score=47.24  Aligned_cols=402  Identities=15%  Similarity=0.078  Sum_probs=221.6

Q ss_pred             cHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          250 ILPMMVAGVW--SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       250 ~l~~lv~~L~--s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .+..+++.+.  .++++.+..+. .|...+..+......+-..|+-..|-.+-+-++.+..+..+.++-..++. ++..+
T Consensus       206 ~ia~~lNa~sKWp~~~~c~~aa~-~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~-~~~l~  283 (2710)
T PRK14707        206 GVATVLNALCKWPDTPDCGNAVS-ALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVD-DPGLR  283 (2710)
T ss_pred             HHHHHHHHHhcCCCChhHHHHHH-HHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-hHHHH
Confidence            4555566555  35566555444 44444444433333333334444444444556644555555455555554 55555


Q ss_pred             HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH-Hhc
Q 035507          328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS-NLC  405 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~-nL~  405 (684)
                      ..+-..+ +...+.-|+. ++..+...|+..|..=-.+.+..+..+ +.-.+...++-|.+-+|..+-+.+..+|. .++
T Consensus       284 ~al~~q~-vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~  361 (2710)
T PRK14707        284 KALDPIN-VTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLV  361 (2710)
T ss_pred             HhcCHHH-HHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence            5544333 4444444444 777888777777775555555544433 23345666777777787777776666665 455


Q ss_pred             cCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHH
Q 035507          406 RGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV  485 (684)
Q Consensus       406 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  485 (684)
                      ............++-..|..+-.-++..+-..+..+|..=. ..+.+..+.+-..|+-..|-.+-+-++..+...+...|
T Consensus       362 ~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l-~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l  440 (2710)
T PRK14707        362 ADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHV-VDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSAL  440 (2710)
T ss_pred             cCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHh-ccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence            54322222233444444555555667666666666665444 36667777666667766666666778888888888877


Q ss_pred             HHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHH-H
Q 035507          486 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIK-E  564 (684)
Q Consensus       486 ~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~-~  564 (684)
                      .--..++.+..+.+-..+ +...+..++.-++..+-.+|+..|..=....++..+.+--.++...|-.+-+-++.... .
T Consensus       441 A~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~  519 (2710)
T PRK14707        441 AGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAE  519 (2710)
T ss_pred             HHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHH
Confidence            776666654444332223 44444445444366677777777665545555555544434444444444444554433 3


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhc
Q 035507          565 EAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE  644 (684)
Q Consensus       565 ~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g  644 (684)
                      .+.|....+..  .....+.|-..++...+-.+-++++......+...|...+.....             ....+...+
T Consensus       520 A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~-------------~~~~L~aq~  584 (2710)
T PRK14707        520 AASALAERVVD--ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQ-------------LPKDLHRQG  584 (2710)
T ss_pred             HHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchh-------------hHHhhhhhH
Confidence            34455555543  222222223333444444455667766666666666665443221             334555555


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          645 GLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       645 ~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      +--.+..|-..++..-+..|..-|....
T Consensus       585 Vs~llNaLSKWP~~~aC~~Aa~~LA~~l  612 (2710)
T PRK14707        585 VVIVLNALSKWPDTAVCAEAVNALAERL  612 (2710)
T ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHh
Confidence            5566777778887777777666665554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.39  E-value=2  Score=45.14  Aligned_cols=233  Identities=14%  Similarity=0.120  Sum_probs=134.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC---CcHHHHHHcCCHHHHHHhhcCCC----C--HHHHHHHHHHHHHHhc
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIES---MPIEEVIESGVVPRFVEFLMRED----Y--PQLQFQAAWALTNIAS  321 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~---~~~~~ii~~g~i~~Lv~lL~~~~----~--~~v~~~A~~~L~~l~~  321 (684)
                      ...+..++...+.+.|++|+-...++....+   .+.+.+.++-+.+.+-+++.+.+    .  .-.+..++.+|+-.|.
T Consensus        13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            3456677777777889999999999888766   55667888888888888886532    1  2345556677777776


Q ss_pred             CCchhH--HHHHhcCChHHHHHhcCC-CCh------HHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchH
Q 035507          322 GTSENT--KVVIEHDAVPIFVKLLAS-PSD------DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS  392 (684)
Q Consensus       322 ~~~~~~--~~i~~~g~i~~Li~lL~~-~~~------~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~  392 (684)
                       .++..  ..++  +.||.|..++.. .++      .+.+.+..+|..+++..+. ...++..|+++.+.+.-.-..-..
T Consensus        93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~  168 (698)
T KOG2611|consen   93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSH  168 (698)
T ss_pred             -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCch
Confidence             44432  2233  568999998875 233      3788899999999998766 456677888888876542221111


Q ss_pred             HHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHH-----H----HHHHHhc
Q 035507          393 MLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK-----I----QAVIEAG  461 (684)
Q Consensus       393 v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~-----~----~~~~~~g  461 (684)
                      -..-++-.+.-+...-  -.......-..+..+..=+...+.......|..|..+.+....+.     .    ......|
T Consensus       169 d~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G  248 (698)
T KOG2611|consen  169 DMALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG  248 (698)
T ss_pred             hHHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence            1111222221111111  111111112223344444445667778888888875441111111     1    1223334


Q ss_pred             hHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507          462 VCGRLVELLGHPSPSVLTPALWTVGNIVM  490 (684)
Q Consensus       462 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~  490 (684)
                      +...|-.-+   .+.-|.+|+....++.+
T Consensus       249 ~~~IL~~kv---~p~qr~pAL~Laa~~~h  274 (698)
T KOG2611|consen  249 VVAILQNKV---APSQRLPALILAANMMH  274 (698)
T ss_pred             HHHHHhccc---CchhcChHHHHHHHHHH
Confidence            443333333   34456677777777654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.32  E-value=1.1  Score=46.84  Aligned_cols=172  Identities=12%  Similarity=0.136  Sum_probs=104.7

Q ss_pred             HHHHHHHHHH-HHhccCCCCCChhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHh
Q 035507          392 SMLRIATTTL-SNLCRGKPRPLFDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL  469 (684)
Q Consensus       392 ~v~~~a~~~L-~nL~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~l  469 (684)
                      +-+..|..-| .-+|.+.-.........++-.+++.+.+ .++.++.-|++.|..++ .+.+.....-.+ -++..+++.
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml-~~Q~~~l~DstE-~ai~K~Lea  379 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREML-TNQPARLFDSTE-IAICKVLEA  379 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH-HhchHhhhchHH-HHHHHHHHH
Confidence            3344444433 3334333222233345667777788876 78889999999999999 554433221121 234455555


Q ss_pred             cCCCCcccHhHHHH-HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCC
Q 035507          470 LGHPSPSVLTPALW-TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGL  547 (684)
Q Consensus       470 L~~~~~~v~~~al~-~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~  547 (684)
                      -.+..+.+...|.. ++.-+++..+.+.        +..+..++... +...-..+...+..++.. ..+....++ ..+
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~di  449 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PDI  449 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hhh
Confidence            55555555555554 4445555555332        23344444445 555555666677777663 334444344 358


Q ss_pred             HHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          548 IGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       548 l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      .|.+++...+.+..+|+.|+++|..+..
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            9999999999999999999999998875

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.19  E-value=0.17  Score=58.53  Aligned_cols=144  Identities=13%  Similarity=0.184  Sum_probs=113.4

Q ss_pred             hHHHHHHhcCC----CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH
Q 035507          462 VCGRLVELLGH----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE  537 (684)
Q Consensus       462 ~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  537 (684)
                      +.|.+++..+.    .+|.++.+|.-+++.+..-+.....     .-+|.|+.++...+++.+|..+..+++.++...|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            45566666633    5688999999999999887765554     35789999998444999999999999999876555


Q ss_pred             HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507          538 QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL  617 (684)
Q Consensus       538 ~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il  617 (684)
                      .+..     .-+.|++.+.+.++.+|+.|.-+++++...+   +   +.-.|.+..+.-++.++++++...|-..+..+-
T Consensus       995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd---m---iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND---M---IKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh---h---hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            4432     4567899999999999999999999998732   2   335789999999999999999988887666666


Q ss_pred             hccc
Q 035507          618 KVGE  621 (684)
Q Consensus       618 ~~~~  621 (684)
                      ..++
T Consensus      1064 ~k~n 1067 (1251)
T KOG0414|consen 1064 SKGN 1067 (1251)
T ss_pred             hccc
Confidence            5543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.18  E-value=7.8  Score=44.81  Aligned_cols=242  Identities=18%  Similarity=0.207  Sum_probs=140.5

Q ss_pred             HHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC----CCC----hHHHHHHH
Q 035507          288 IESGVVPRFVEFLMRED----YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA----SPS----DDVREQAV  355 (684)
Q Consensus       288 i~~g~i~~Lv~lL~~~~----~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~----~~~----~~v~~~a~  355 (684)
                      .+.|++..++.++.+-.    ....-...+..|..++. .+.+|+.+++.|+++.|+..+.    .+.    ..+.+..+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            34678888888886632    13455556667777776 7999999999999999999774    333    67888888


Q ss_pred             HHHHHhhCCCCC--Cc---hhHhh-------cCCHHHHHHHhccC---CchHHHHHHHHHHHHhccCCCCCChhhhhchH
Q 035507          356 WALGNVAADSSG--CR---DLVLS-------EGALIPLLAQLNEH---TELSMLRIATTTLSNLCRGKPRPLFDQVRPAL  420 (684)
Q Consensus       356 ~~L~nLa~~~~~--~r---~~i~~-------~g~l~~Ll~~L~~~---~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l  420 (684)
                      .++..+..+...  ..   .....       ...+..+++.+.+.   .++.+....+..|-+|+.+.+......+...-
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~  272 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFK  272 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHH
Confidence            777777643321  00   00001       11266667766533   36788899999999999986433322222222


Q ss_pred             HHHHHHhc-----CCcHHHHHHH-HHHHHhhccCCC--hHHHHHHHHhchHHHHHHhcCCCCc----------------c
Q 035507          421 PALAQLIH-----SNDEQVLTDA-CWALFGLSGDRN--NDKIQAVIEAGVCGRLVELLGHPSP----------------S  476 (684)
Q Consensus       421 ~~L~~lL~-----~~d~~v~~~a-l~~L~~L~~~~~--~~~~~~~~~~g~l~~L~~lL~~~~~----------------~  476 (684)
                      |.+ ++=.     .++..+..+. +.+...+- ...  ....+.+++.|++...+..|...-|                .
T Consensus       273 p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~-~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  273 PYL-DFDKFDEEHSPDEQFKLECFCEIAEGIP-NNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             Hhc-ChhhcccccCchHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence            222 1111     1122233222 22222332 222  3557788999999988887744221                2


Q ss_pred             cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      ....+++.|.-++.++. .++..+..++++.+..+=+-+.+..+-.-|=..|-.++.
T Consensus       351 sLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             cHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            33457888888888876 455557777775555443333133444444444444433

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=5.4  Score=42.34  Aligned_cols=249  Identities=13%  Similarity=0.116  Sum_probs=129.9

Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh--h
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD--F  494 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~  494 (684)
                      ...+..+..-..+++..++..|++.|++.+ .+.++........-+...+..+....+.+|.-.|+.+|..+.....  +
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~a-s~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~  335 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTA-SGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD  335 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHh-ccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence            344444444455778899999999999999 7755554434333233344455566678888899888887764221  1


Q ss_pred             hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CC--hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHH
Q 035507          495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GN--REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI  570 (684)
Q Consensus       495 ~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~--~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL  570 (684)
                      ....++  .+.-.+..+..+. ++++|..|...++.++.  +.  .+.....+..+..|.++. +.+.++.+-. ||.+.
T Consensus       336 l~~~~l--~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~va~-ACr~~  410 (533)
T KOG2032|consen  336 LESYLL--NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYVAR-ACRSE  410 (533)
T ss_pred             hhhhch--hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHHHH-HHHHH
Confidence            111121  2444666777777 89999999888887764  21  121122233344444444 4556665543 44444


Q ss_pred             HHhhcCCC--HHHHHHHH---H------CCChHHHHhhccCCChHHHHHHHHHHHHHHhccccccc-------CCCCCcc
Q 035507          571 SNASSRGT--HDQIKYLV---T------EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKN-------TDSDIGD  632 (684)
Q Consensus       571 ~nl~~~~~--~~~~~~l~---~------~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~-------~~~~~~~  632 (684)
                      ...+.-+-  .+...++-   +      .......+--+++..+++....+.....++...-....       ....-+-
T Consensus       411 ~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l  490 (533)
T KOG2032|consen  411 LRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSL  490 (533)
T ss_pred             HHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHh
Confidence            44433110  01000000   0      01122222224444444444444433333332210000       0000001


Q ss_pred             hhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       633 ~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                      ...++.....+.....+..|-..+-+++.+.|.+.++..
T Consensus       491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l  529 (533)
T KOG2032|consen  491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLL  529 (533)
T ss_pred             HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhH
Confidence            223455555555667788888888999999998887653

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.13  E-value=0.72  Score=50.78  Aligned_cols=194  Identities=11%  Similarity=0.082  Sum_probs=137.8

Q ss_pred             hhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh
Q 035507          415 QVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF  494 (684)
Q Consensus       415 ~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  494 (684)
                      ...+++|.+++++...|..++...+.-+-... +   ...+.+++..++|.+..-+.+.++.+|+.++.++..++..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i-~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI-D---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHh-h---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence            55789999999999999999988877776555 2   3334567778999999999999999999999999888753321


Q ss_pred             hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507          495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS  574 (684)
Q Consensus       495 ~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~  574 (684)
                         ..+....+..+..+-.+. +..+|-...-+++.|+.......   .+.-....+.+.+.+.-..-|..+.+++....
T Consensus       403 ---~~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  403 ---RNLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             ---hhhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence               123333444444444434 77899888888888876532221   22223445556677776777888888887665


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          575 SRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       575 ~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      .......    +...+++.++-+.-+++..++..+..++...+...++.
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            4322111    24557888888888899999999999999888776554

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.10  E-value=3.9  Score=47.14  Aligned_cols=240  Identities=16%  Similarity=0.155  Sum_probs=147.7

Q ss_pred             hchHHHHHHHhcC-----CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC----CCC----cccHhHHHH
Q 035507          417 RPALPALAQLIHS-----NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG----HPS----PSVLTPALW  483 (684)
Q Consensus       417 ~~~l~~L~~lL~~-----~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~----~~~----~~v~~~al~  483 (684)
                      .+++..++.++.+     .+.+....++..|.+.+  .-..+++.+++.|+++.|+..+.    .+.    ..+.+..+.
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~--Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC--KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH--hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            3667777777653     34566777788888877  55788899999999999888773    433    566777777


Q ss_pred             HHHHHHcCChhhHH----HHHhc--------CChHHHHHHhccCC---ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507          484 TVGNIVMGDDFQTQ----CIINH--------GAVPCLLALLIHNH---KNSIKKEVSWIISNIACGNREQIQAVIDAGLI  548 (684)
Q Consensus       484 ~L~nl~~~~~~~~~----~~i~~--------g~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l  548 (684)
                      ++..+.........    .....        .-+..+++.+.++.   ++.+....+.+|.+++.|..+..+.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            77666543321110    00111        12666666665542   57888999999999999999988888764  3


Q ss_pred             HHHHHHhccC---CHhHHHHHHHHHHHhhcCC-----CHHHHHHHHHCCChHHHHhhccCCCh--------H--------
Q 035507          549 GPLVNLLQNA---EFDIKEEAAWAISNASSRG-----THDQIKYLVTEGCIKPLCDLLQCADP--------K--------  604 (684)
Q Consensus       549 ~~Li~ll~~~---~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~g~l~~L~~lL~~~~~--------~--------  604 (684)
                      .+.+++=...   ..+- ...+.+++.++.+-     ......++++.|++...++++...-|        +        
T Consensus       272 ~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence            3333322111   1111 22355555555432     23456778899999988888853222        1        


Q ss_pred             HHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCC
Q 035507          605 IVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL-QSHDNNEIHEKSVKILETYWCGR  675 (684)
Q Consensus       605 v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ii~~~f~~e  675 (684)
                      -...++..|.-+......              .+.+...+++..+-.| +-+....|=..|.++|+..=+.+
T Consensus       351 sLp~iL~lL~GLa~gh~~--------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHEP--------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             cHHHHHHHHHHHHhcCHH--------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            234455555555543221              2233445667777777 44456788899999998775443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.07  E-value=0.86  Score=47.73  Aligned_cols=147  Identities=12%  Similarity=0.157  Sum_probs=98.7

Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHH
Q 035507          378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAV  457 (684)
Q Consensus       378 l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~  457 (684)
                      +..++..|.++.+...+.-|+..|..+|...+.+-+....-++..+++.-.+.++++...|..+...+.....+..    
T Consensus       331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~----  406 (516)
T KOG2956|consen  331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ----  406 (516)
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh----
Confidence            4566777766678888999999999999998777777777777777777666666666555544333220222211    


Q ss_pred             HHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          458 IEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       458 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                          -+..+..++...+...-..++.++..+...-+..--..+-..+.|.+++-..+. +..||+.|.++|..+..
T Consensus       407 ----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 ----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             ----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                133444555556666666677778877765442211122246889999999888 99999999999988754

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.00  E-value=0.17  Score=39.10  Aligned_cols=66  Identities=21%  Similarity=0.340  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 035507          521 KKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTEG  589 (684)
Q Consensus       521 ~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g  589 (684)
                      .|.|.|++++++.. +..++.+.+.++++.++++.... ...+|-.|.++|+-++.  +.+..+.|.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999874 46677777789999999998754 78899999999999987  677777766655

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=7.8  Score=43.25  Aligned_cols=300  Identities=14%  Similarity=0.075  Sum_probs=170.3

Q ss_pred             HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--------CChHHHHHHHHHHHHhhC--CCCCCchhHhhcCCHHH
Q 035507          311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--------PSDDVREQAVWALGNVAA--DSSGCRDLVLSEGALIP  380 (684)
Q Consensus       311 ~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--------~~~~v~~~a~~~L~nLa~--~~~~~r~~i~~~g~l~~  380 (684)
                      +|+.++..+.+...+.+  +  .|+++.+.+.|..        .++.-.+.|++.++++..  +.+....-+.+.-+++.
T Consensus       389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            35556655555333322  2  3889999998832        234556778888888764  22222233333334455


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507          381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA  460 (684)
Q Consensus       381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~  460 (684)
                      ++..+ ++..--++..+|..++.+...  -+.......+.......+.+++-.++..|.-|+..+. .+.  +......+
T Consensus       465 v~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi-~~~--q~h~k~sa  538 (970)
T COG5656         465 VIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFI-FNE--QSHEKFSA  538 (970)
T ss_pred             hhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH-hch--hhhHHHHh
Confidence            55555 566667788899999998433  3344455677777888888888899999999998887 332  33334444


Q ss_pred             ch---HHHHHHhcCCCCcccHhHHHHH-HHHHHcCChhhHHHHHh---cCChHHHHHHhccCC-----ChhHHHHHHHHH
Q 035507          461 GV---CGRLVELLGHPSPSVLTPALWT-VGNIVMGDDFQTQCIIN---HGAVPCLLALLIHNH-----KNSIKKEVSWII  528 (684)
Q Consensus       461 g~---l~~L~~lL~~~~~~v~~~al~~-L~nl~~~~~~~~~~~i~---~g~l~~L~~lL~~~~-----~~~v~~~a~~~L  528 (684)
                      .+   ++.|+.+-+.-+.++....+.. ++..+..-......+..   ...+.....++..++     ..+-+..|...|
T Consensus       539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL  618 (970)
T COG5656         539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGIL  618 (970)
T ss_pred             hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence            34   4444444343333444333332 22222211111111111   122333333333221     113344555555


Q ss_pred             HHHhc------CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 035507          529 SNIAC------GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD  602 (684)
Q Consensus       529 ~nl~~------~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~  602 (684)
                      ..+..      ..+.....+ +....|..--++.+.-.+.-.+|+..+-+.+-. ..+...  +--|+.+.+.+++.+..
T Consensus       619 ~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~p--imwgi~Ell~~~l~~~~  694 (970)
T COG5656         619 RTIESMILSLENRPLVLKYL-EVSLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEP--IMWGIFELLLNLLIDEI  694 (970)
T ss_pred             HHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhh--hhhHHHHHHHhcccccc
Confidence            55432      344444433 334667777777888888888999888777642 112111  23356777778887776


Q ss_pred             h-HHHHHHHHHHHHHHhcccccc
Q 035507          603 P-KIVTVCLEGLENILKVGEAEK  624 (684)
Q Consensus       603 ~-~v~~~al~~L~~il~~~~~~~  624 (684)
                      + .-...+..++.+++.+|.+.-
T Consensus       695 t~~y~ee~~~al~nfityG~~ef  717 (970)
T COG5656         695 TAVYSEEVADALDNFITYGKTEF  717 (970)
T ss_pred             hhhhHHHHHHHHHHHHHhCcccc
Confidence            4 667888889999999986654

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.92  E-value=2.1  Score=43.85  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=111.9

Q ss_pred             hchHHHHH-HHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh-h
Q 035507          417 RPALPALA-QLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD-F  494 (684)
Q Consensus       417 ~~~l~~L~-~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~  494 (684)
                      .+++..++ ..+.+.++.++..++.+++-.+ --+.+...     ..++.+...+..+++.++..|+.++..+..... .
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~-Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~   98 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCC-LLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGID   98 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence            35565544 7888999999999999999888 43332222     346777777877788999999999999874332 1


Q ss_pred             hHHHH-------HhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc----cCCHhHH
Q 035507          495 QTQCI-------INHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ----NAEFDIK  563 (684)
Q Consensus       495 ~~~~~-------i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~----~~~~~v~  563 (684)
                      .....       -...++..+.+.+.+. +++++..|+..++.+.-.+.-.-    ...++..|+-..-    ..+..++
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~Lr  173 (298)
T PF12719_consen   99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLR  173 (298)
T ss_pred             hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHH
Confidence            11111       1235778888899888 99999999999999864221111    0223344443332    2356777


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507          564 EEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA  601 (684)
Q Consensus       564 ~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~  601 (684)
                      ..-...+-..+.. ++++. ..+....++.+..+.+..
T Consensus       174 Q~L~~Ffp~y~~s-~~~~Q-~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  174 QCLSVFFPVYASS-SPENQ-ERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHcC-CHHHH-HHHHHHHHHHHHHHHhCc
Confidence            7777777777764 34443 344555677777766543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.75  E-value=0.042  Score=34.61  Aligned_cols=28  Identities=43%  Similarity=0.748  Sum_probs=25.3

Q ss_pred             hHHHHHhcCCCChHHHHHHHHHHHHhhC
Q 035507          336 VPIFVKLLASPSDDVREQAVWALGNVAA  363 (684)
Q Consensus       336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~  363 (684)
                      +|.+++++++++++||..|+++|+.++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.62  E-value=0.13  Score=48.62  Aligned_cols=110  Identities=16%  Similarity=0.203  Sum_probs=81.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC--------CCCHHHHHHHHHHHHHHh
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR--------EDYPQLQFQAAWALTNIA  320 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~--------~~~~~v~~~A~~~L~~l~  320 (684)
                      ....+++.+.+.....  ..+..|+..+...+ .-++.+++.|++..|+++|..        ..+..++.+++.||..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4567888887765443  45566666666554 457788899999999998853        123578999999999999


Q ss_pred             cCCchhHHHHHh-cCChHHHHHhcCCCChHHHHHHHHHHHHhh
Q 035507          321 SGTSENTKVVIE-HDAVPIFVKLLASPSDDVREQAVWALGNVA  362 (684)
Q Consensus       321 ~~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa  362 (684)
                      . +......++. .+++..++..|.+++..++..|+.+|+.+|
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8 5566666664 688999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.55  E-value=1.2  Score=51.09  Aligned_cols=185  Identities=15%  Similarity=0.107  Sum_probs=128.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI  331 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~  331 (684)
                      +.+-..+.+.++..+.+|+..+...++... ....-...|.+-.++.....+.+-.+...|+.+|..|+......... .
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-Y  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-H
Confidence            455566778999999999999999887654 11111223455555555544444788999999999999854433222 2


Q ss_pred             hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC--C
Q 035507          332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK--P  409 (684)
Q Consensus       332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~--~  409 (684)
                      ..+..|.++.-+......+++.+..++-.++...+.       ....+.++..+ .+.++.++..+...+....+..  .
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCc
Confidence            236788888888888888888888777777653221       12345566666 7788888877666665555443  2


Q ss_pred             CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      .........++|.++....+.+.+|+..+..+++-+.
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence            2344556889999999999999999999999988666

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.55  E-value=0.049  Score=34.31  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             ChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          504 AVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      ++|.+.+++.++ +++||..|+++|+.++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            378999999999 99999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.33  E-value=7.1  Score=40.53  Aligned_cols=160  Identities=16%  Similarity=0.186  Sum_probs=114.5

Q ss_pred             hHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHh-CC-HHHHHHHhccC-----C--------HhHHHHHHH
Q 035507          505 VPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDA-GL-IGPLVNLLQNA-----E--------FDIKEEAAW  568 (684)
Q Consensus       505 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-g~-l~~Li~ll~~~-----~--------~~v~~~a~~  568 (684)
                      +..+...|.+. ...+...+...|..++. ........+... ++ .+.+-+++...     +        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77888888888 77888889999999988 665666666642 11 34455554221     1        289999998


Q ss_pred             HHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHH
Q 035507          569 AISNASSRGTHDQIKYLV-TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLE  647 (684)
Q Consensus       569 aL~nl~~~~~~~~~~~l~-~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~  647 (684)
                      .+..+...+++.....+. +.+.+..+...+..++++++..+++++..-.-.+......        .-+..+. ...+.
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~fn-~~~L~  207 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLFN-EWTLS  207 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhcC-HHHHH
Confidence            888888878887776665 5667899999999999999999999999654444433211        1233333 33677


Q ss_pred             HHHHhhcCCCH----HHHHHHHHHHHHhcCC
Q 035507          648 KIENLQSHDNN----EIHEKSVKILETYWCG  674 (684)
Q Consensus       648 ~L~~L~~~~~~----~i~~~a~~ii~~~f~~  674 (684)
                      +|..|-...++    .+.+.|.+.+..+..+
T Consensus       208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  208 QLASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             HHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            88888777777    8999999999987654

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.30  E-value=0.96  Score=44.13  Aligned_cols=175  Identities=14%  Similarity=0.174  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHhc-CCchhHHHHHhcCChHHHHHh
Q 035507          268 EATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED----YPQLQFQAAWALTNIAS-GTSENTKVVIEHDAVPIFVKL  342 (684)
Q Consensus       268 ~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~----~~~v~~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~Li~l  342 (684)
                      .|+..|..+++ +++.+..++++.+.-.|..+|+..+    .+.+|..++.+++.+.. ++++....+.+.+++|.-+..
T Consensus        69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~  147 (262)
T PF04078_consen   69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI  147 (262)
T ss_dssp             HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence            44555555555 5678888999998777777776543    35788999999999998 566777888899999999999


Q ss_pred             cCCCChHHHHHHHHHHHHhhCCCCCC------chhH-hhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhh
Q 035507          343 LASPSDDVREQAVWALGNVAADSSGC------RDLV-LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ  415 (684)
Q Consensus       343 L~~~~~~v~~~a~~~L~nLa~~~~~~------r~~i-~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~  415 (684)
                      +..++.-.+.-|..++..|-.++.+.      .+.+ .-..++..++..+...+++.+.++.+.+...|+.+.  .....
T Consensus       148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar~a  225 (262)
T PF04078_consen  148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAREA  225 (262)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHHHH
Confidence            99998888888999988887655321      1111 112345566666667889999999999999999884  22222


Q ss_pred             hhchHHHHHH-----HhcCCcHHHHHHHHHHHHhh
Q 035507          416 VRPALPALAQ-----LIHSNDEQVLTDACWALFGL  445 (684)
Q Consensus       416 ~~~~l~~L~~-----lL~~~d~~v~~~al~~L~~L  445 (684)
                      ....+|..+.     -+-.+|+.++.+--..+.++
T Consensus       226 L~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  226 LRQCLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             HHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             HHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            2334443111     11134666666666666554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.10  E-value=0.39  Score=43.92  Aligned_cols=147  Identities=10%  Similarity=0.055  Sum_probs=91.7

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      .+++.|.++|+.+....+|.+|+++|+.|..-+|...+.+....  +.-.  -...+.......... .+.   .+ ..+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~-~~~---~~-~~e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPM-MGI---SP-SSE   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhh-ccC---CC-chH
Confidence            36778889998876689999999999999997776555332211  1000  001111111111111 111   11 112


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      ...-..++..|+..|.+.+-..-...++.++.++..............++|.++..++..++..++..++-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2333345778888886555555555777888877765555557778999999999999777788888877777665

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.05  E-value=1.6  Score=46.13  Aligned_cols=119  Identities=12%  Similarity=0.171  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHc---CChhhHHHHHh-cCChHHHHHHhccCC--ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHH
Q 035507          480 PALWTVGNIVM---GDDFQTQCIIN-HGAVPCLLALLIHNH--KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN  553 (684)
Q Consensus       480 ~al~~L~nl~~---~~~~~~~~~i~-~g~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~  553 (684)
                      ..++++..+..   +.....+.+++ ..++..|..++.+..  .+.+-..|+.+++.+....|.....+.++|+++.+++
T Consensus        79 ~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~  158 (379)
T PF06025_consen   79 SLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLD  158 (379)
T ss_pred             HHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHH
Confidence            34455555555   33445566777 566778888887763  4578888999999999888899999999999999999


Q ss_pred             Hhc-cC---CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC
Q 035507          554 LLQ-NA---EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC  600 (684)
Q Consensus       554 ll~-~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~  600 (684)
                      .+. .+   +.++-...-.+++.++-  +....+.+.+.+.++.+.+.+.+
T Consensus       159 ~i~~~~i~~s~e~l~~lP~~l~AicL--N~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  159 AITAKGILPSSEVLTSLPNVLSAICL--NNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HHhccCCCCcHHHHHHHHHHHhHHhc--CHHHHHHHHhcChHHHHHHHhCC
Confidence            998 43   55666666677777776  66777888888888888887753

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.05  E-value=0.62  Score=42.48  Aligned_cols=136  Identities=18%  Similarity=0.182  Sum_probs=92.5

Q ss_pred             CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHH-hcCChHH
Q 035507          429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPC  507 (684)
Q Consensus       429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~  507 (684)
                      ...++++..+.-++..+- +.    ...-...-+-..+-.++.....+-...++.++..+-.+.++....++ ..|+++.
T Consensus        16 ~~~~~~r~~a~v~l~k~l-~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~   90 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL-DA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES   90 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH-HH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence            456778888888887765 22    22222223344555666666666788899999999888887666555 6789999


Q ss_pred             HHHHhc--cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHh-HHHHHHHHHHH
Q 035507          508 LLALLI--HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFD-IKEEAAWAISN  572 (684)
Q Consensus       508 L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~-v~~~a~~aL~n  572 (684)
                      +..++.  .. +..++..++.+++.-|. + +.....+...+++.|-+.++.. +.. +|..|+-+|+.
T Consensus        91 l~~~~~~~~~-~~~~~~~~lell~aAc~-d-~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   91 LLPLASRKSK-DRKVQKAALELLSAACI-D-KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHHH-CTS--HHHHHHHHHHHHHHTT-S-HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHHhcccC-CHHHHHHHHHHHHHHHc-c-HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            999998  55 77788877777766554 3 3444445556899999999644 555 78888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.00  E-value=0.77  Score=45.05  Aligned_cols=101  Identities=17%  Similarity=0.106  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC
Q 035507          265 LQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA  344 (684)
Q Consensus       265 ~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~  344 (684)
                      ....|+..|.-++--+++.+..+.+...+..++.+|.....+.++..++.+|..+.-+++.+.+.+-+.+++..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            34557788888887787778888888999999999966555899999999999999999999999999999999999998


Q ss_pred             C--CChHHHHHHHHHHHHhhCCC
Q 035507          345 S--PSDDVREQAVWALGNVAADS  365 (684)
Q Consensus       345 ~--~~~~v~~~a~~~L~nLa~~~  365 (684)
                      +  .+.+++-.++..|.-.....
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHccc
Confidence            7  56788888888887665443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.00  E-value=5.3  Score=44.27  Aligned_cols=106  Identities=16%  Similarity=0.146  Sum_probs=77.1

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507          290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR  369 (684)
Q Consensus       290 ~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r  369 (684)
                      +|.+..+++...+.+ ..+|...+..|..+.. ....+...+-.+....+..=+.+..+.||.+|+.+|+.+-++...  
T Consensus        84 ~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d--  159 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKD-KKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD--  159 (892)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC--
Confidence            455666666666666 7999999999999887 333344444456667777767777899999999999999754422  


Q ss_pred             hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507          370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLS  402 (684)
Q Consensus       370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~  402 (684)
                         -+..++..+...+.++++.++++.++..+.
T Consensus       160 ---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  160 ---EECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ---CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence               123457788888889999999998765443

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.90  E-value=4.5  Score=43.77  Aligned_cols=109  Identities=18%  Similarity=0.108  Sum_probs=80.2

Q ss_pred             hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507          413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD  492 (684)
Q Consensus       413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  492 (684)
                      ...+.+.+..+++.+.++|..++..+|..|+.+. +. -.-++..+-.|.+..|.+-+-+..+.+|..|+.+|+.+-...
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~-d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~  163 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLS-DV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME  163 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH-Hh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence            4556777777888888999999999999999998 43 334455666688888988888899999999999999886433


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507          493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII  528 (684)
Q Consensus       493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L  528 (684)
                      ...-.     .+...|..+++..++.+||+.|..-+
T Consensus       164 ~neen-----~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         164 LNEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             CChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            21111     12346667776665888998765433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.68  E-value=1.3  Score=48.45  Aligned_cols=144  Identities=15%  Similarity=0.195  Sum_probs=104.9

Q ss_pred             hchHHHHHHHhcC----CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC-CCCcccHhHHHHHHHHHHcC
Q 035507          417 RPALPALAQLIHS----NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG-HPSPSVLTPALWTVGNIVMG  491 (684)
Q Consensus       417 ~~~l~~L~~lL~~----~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~  491 (684)
                      ...-|.+.....+    .|++++..|.-+|..+- .-+.+...     .-+|.++..+. +++|.+|..|+-.+|.++..
T Consensus       891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klM-ClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vc  964 (1128)
T COG5098         891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLM-CLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVC  964 (1128)
T ss_pred             hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHH-HHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeecccccee
Confidence            3444555555543    78999999988887665 33332222     35788888886 89999999999999998754


Q ss_pred             ChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHH
Q 035507          492 DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAIS  571 (684)
Q Consensus       492 ~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~  571 (684)
                      -....+.     .-..|..-|.+. +..||+.|..++.++.-.+.     +--.|-++.+..+|.++|.++...|-..+.
T Consensus       965 fN~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft 1033 (1128)
T COG5098         965 FNTTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFT 1033 (1128)
T ss_pred             hhhhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHH
Confidence            4333322     234666777777 89999999999999864321     122477899999999999999999999999


Q ss_pred             HhhcCC
Q 035507          572 NASSRG  577 (684)
Q Consensus       572 nl~~~~  577 (684)
                      .++...
T Consensus      1034 ~~a~Kd 1039 (1128)
T COG5098        1034 QIAKKD 1039 (1128)
T ss_pred             HHHhcc
Confidence            998743

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=93.60  E-value=1.8  Score=47.86  Aligned_cols=257  Identities=14%  Similarity=0.146  Sum_probs=164.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI  331 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~  331 (684)
                      -.++..+.-.+.+.+..-...|.+.+..   --+.++...++|.|+..+...+...-....+-.++..... .+     .
T Consensus       257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~---~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----y  327 (690)
T KOG1243|consen  257 LLFLEELRLKSVEEKQKFFSGLIDRLDN---FPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----Y  327 (690)
T ss_pred             HHHHHhcccCcHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----c
Confidence            4555566667777777666666664433   2355677778888888876654111122222223333331 11     5


Q ss_pred             hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC
Q 035507          332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP  411 (684)
Q Consensus       332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~  411 (684)
                      ..+++|.+++++.+++..+|-.-+.-+-+....-   .+.+.+..+++.+..-+ .+++..++..++.++..++..-...
T Consensus       328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh
Confidence            5688999999999999999876666666555443   34556666777777777 7788889998888888777553221


Q ss_pred             ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHH-HHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507          412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCG-RLVELLGHPSPSVLTPALWTVGNIVM  490 (684)
Q Consensus       412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~-~L~~lL~~~~~~v~~~al~~L~nl~~  490 (684)
                        ..-...+..+..+-.+++..++.+..-+++.++ ...    +.....+++. .+..-+.++-...|..+...+.....
T Consensus       404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~-~~l----~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIA-PHL----AASVRKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             --hhcHHHHHHHHhhCccccCcccccceeeecccc-ccc----chhhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence              122344555555555677889999999998888 332    1122334333 34445777777888888888766554


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507          491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA  532 (684)
Q Consensus       491 ~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  532 (684)
                      ..+   +.-+...++|.+..+.-++ +..+|..|..++...-
T Consensus       477 ~~~---~~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  477 YFD---QSEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFL  514 (690)
T ss_pred             ccc---hhhhhhhccccccccccCc-ccchhhHHHHHHHHHH
Confidence            333   2223456899999888888 8888888887776553

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=93.52  E-value=9  Score=38.36  Aligned_cols=201  Identities=12%  Similarity=0.095  Sum_probs=136.1

Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC-CCC--hhhh---hchHHHHHHHhcCCc-HHHHHHHHHHHH
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP-RPL--FDQV---RPALPALAQLIHSND-EQVLTDACWALF  443 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~-~~~--~~~~---~~~l~~L~~lL~~~d-~~v~~~al~~L~  443 (684)
                      .+.++|.+..++..+ ...+-+.++.++...+++-+..- ...  ....   ..++..++.-  ..+ +++...+-..+.
T Consensus        74 ef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   74 EFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLR  150 (342)
T ss_pred             HHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHH
Confidence            345667788888888 66677788888888888887762 111  1111   3333333333  122 344333333333


Q ss_pred             hhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCC----hHHHHHHhccCCChh
Q 035507          444 GLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGA----VPCLLALLIHNHKNS  519 (684)
Q Consensus       444 ~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~----l~~L~~lL~~~~~~~  519 (684)
                      ...  ..+...+.+..+.-+......++.+.-++...|..+...+.+........++..+.    .+..-.++.+. +.-
T Consensus       151 Eci--rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyv  227 (342)
T KOG1566|consen  151 ECI--RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYV  227 (342)
T ss_pred             HHH--hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-cee
Confidence            332  34455566677777888888888888899999999999988777766666665433    34466677888 999


Q ss_pred             HHHHHHHHHHHHhcC--Ch-HHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507          520 IKKEVSWIISNIACG--NR-EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG  577 (684)
Q Consensus       520 v~~~a~~~L~nl~~~--~~-~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~  577 (684)
                      .++.+...++.+.-+  +. ...+++-+..-+..++.+|.++...++-+|-....-.....
T Consensus       228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            999999999998753  22 22344445567899999999999999999998888777643

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.48  E-value=0.46  Score=36.70  Aligned_cols=66  Identities=18%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             HhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh
Q 035507          478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA  545 (684)
Q Consensus       478 ~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  545 (684)
                      .+.|++++++++... ...+.+.+.++++.++++..+.+...+|-.|.++|+-++.. .+....+-+.
T Consensus         4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence            568999999998744 46666667899999999998775788999999999988763 3444444443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=93.42  E-value=0.87  Score=48.68  Aligned_cols=156  Identities=18%  Similarity=0.161  Sum_probs=97.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507          253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEF-LMREDYPQLQFQAAWALTNIASGTSENTKVVI  331 (684)
Q Consensus       253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~l-L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~  331 (684)
                      .+.+++.+.|+-.+..++-.+.--..+. .      ..|++..++.. .++.+ .++|..|+.+|+-+|..++       
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GT-g------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~-------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGT-G------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR-------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcC-C------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCc-------
Confidence            3444555666666666655554322221 1      23567777777 45555 7999999999999998544       


Q ss_pred             hcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCC
Q 035507          332 EHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR  410 (684)
Q Consensus       332 ~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~  410 (684)
                        ..++..+++|.. .++.||...+.+|+-.|...-.   ..    ++ -++..|..++..-+++.|+-+++-+.....+
T Consensus       585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~---~~----a~-diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD---KV----AT-DILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---HH----HH-HHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence              456666776654 7899999999999987755422   00    12 2334444677777888888888766554433


Q ss_pred             CChhhhhchHHHHHHHhcCCcHH
Q 035507          411 PLFDQVRPALPALAQLIHSNDEQ  433 (684)
Q Consensus       411 ~~~~~~~~~l~~L~~lL~~~d~~  433 (684)
                      .-...+.++...+.+.+....++
T Consensus       655 ~Lnp~v~~I~k~f~~vI~~Khe~  677 (926)
T COG5116         655 ELNPNVKRIIKKFNRVIVDKHES  677 (926)
T ss_pred             ccChhHHHHHHHHHHHHhhhhHh
Confidence            33344566666677776655443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.40  E-value=3.6  Score=38.31  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=81.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCch
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      .-+.|+..+-.+.++.+|..|+.++..+..+...+-...-+...        .. .....-......+..          
T Consensus        40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~--------~~~sFtslS~tLa~~i~~----------  101 (182)
T PF13251_consen   40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKG--------PSGSFTSLSSTLASMIME----------  101 (182)
T ss_pred             CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCC--------CCCCcccHHHHHHHHHHH----------
Confidence            44555555544334899999999999999864332222221110        00 001111111111111          


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC--CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                            .-..|+..+....+..+....+.++..+....|  .-.......++..+..++.+.|++++..++.+++.+.
T Consensus       102 ------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~  173 (182)
T PF13251_consen  102 ------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL  173 (182)
T ss_pred             ------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                  134566666666677788888889999988874  3344555777777788888999999999999998887

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=93.28  E-value=2.6  Score=48.56  Aligned_cols=187  Identities=12%  Similarity=0.080  Sum_probs=131.5

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhh
Q 035507          337 PIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV  416 (684)
Q Consensus       337 ~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~  416 (684)
                      +.+-.-+.++++.-|..|+..+..+..... ........|.+..++.....+.+..+...++.+|..++...........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            344445566677777777777777765543 1112223445666677776788888899999999999988755556667


Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChh-h
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF-Q  495 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~  495 (684)
                      ...+|.+++-+......++..+..++-.++ ...       .-..+.+.+...+++.++.++..+...+.......+. .
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~-ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAIL-NST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHH-hcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence            888899998888888888777777776666 211       1123577888999999999999988888777655441 1


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      ...-.-.+.+|.++....+. +.+||..|..+++-+..
T Consensus       407 ~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  407 VEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence            11111235788888888888 99999999998887754

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.93  E-value=3.4  Score=43.45  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC------CCCcccHhHHHHHHHHHHcCChh-----------
Q 035507          432 EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG------HPSPSVLTPALWTVGNIVMGDDF-----------  494 (684)
Q Consensus       432 ~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~~-----------  494 (684)
                      ..-+.+|+..+..++ .........+    +...+..++.      ..++.-+..|++.++.++.....           
T Consensus       225 ~TrR~AA~dfl~~L~-~~~~~~v~~i----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~  299 (370)
T PF08506_consen  225 DTRRRAACDFLRSLC-KKFEKQVTSI----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL  299 (370)
T ss_dssp             -SHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred             CCcHHHHHHHHHHHH-HHHhHHHHHH----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence            455677888888888 3222211111    1222333332      34566778899999999865532           


Q ss_pred             -hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHH
Q 035507          495 -QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI  570 (684)
Q Consensus       495 -~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL  570 (684)
                       ....+....++|.|. --.+. .+-++..|++.+......-+..  .+  .+++|.+++.|.+++.-|...|+.|+
T Consensus       300 v~v~~Ff~~~v~peL~-~~~~~-~piLka~aik~~~~Fr~~l~~~--~l--~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  300 VDVVDFFSQHVLPELQ-PDVNS-HPILKADAIKFLYTFRNQLPKE--QL--LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             S-HHHHHHHHTCHHHH--SS-S--HHHHHHHHHHHHHHGGGS-HH--HH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             ccHHHHHHHHhHHHhc-ccCCC-CcchHHHHHHHHHHHHhhCCHH--HH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence             223444555666665 11233 6779999999999886642221  12  24799999999999999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=92.89  E-value=1.7  Score=42.78  Aligned_cols=99  Identities=11%  Similarity=0.080  Sum_probs=83.0

Q ss_pred             cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhc
Q 035507          477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQ  556 (684)
Q Consensus       477 v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~  556 (684)
                      ....|++.|.-++--++..+..+-+...+..++.+|.....+.++..+..+|..+...++.+...+-+.+++..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            35567888888887788778888888999999999965447889999999999999888899998999999999999998


Q ss_pred             cC--CHhHHHHHHHHHHHhhc
Q 035507          557 NA--EFDIKEEAAWAISNASS  575 (684)
Q Consensus       557 ~~--~~~v~~~a~~aL~nl~~  575 (684)
                      +.  +.+++-.+...|.-...
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHc
Confidence            76  67777777777776664

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.86  E-value=0.39  Score=52.40  Aligned_cols=146  Identities=12%  Similarity=0.065  Sum_probs=107.9

Q ss_pred             hHHHHHHhcCC----CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH
Q 035507          462 VCGRLVELLGH----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE  537 (684)
Q Consensus       462 ~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  537 (684)
                      +.|.+.+...+    .++.++..|--+|..+.+-+.....     .-+|.++..+...++|.+|..|.-.++.++.....
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            34444444443    5778888888888888776654443     35899999998443999999999999998764323


Q ss_pred             HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507          538 QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL  617 (684)
Q Consensus       538 ~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il  617 (684)
                      .+..     .-..|++-|.+.+..|++.|.-++.++...|.      +.-.|-+..+..+|.++|.++...|--.+..+.
T Consensus       968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            2222     34567888889999999999999999987552      224677888889999999999888888888877


Q ss_pred             hccccc
Q 035507          618 KVGEAE  623 (684)
Q Consensus       618 ~~~~~~  623 (684)
                      ...+..
T Consensus      1037 ~KdNt~ 1042 (1128)
T COG5098        1037 KKDNTM 1042 (1128)
T ss_pred             hcccch
Confidence            765443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.83  E-value=14  Score=46.69  Aligned_cols=100  Identities=6%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 035507          260 SDDNNLQLEATTQFQKLLSIESMP---IEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAV  336 (684)
Q Consensus       260 s~~~~~~~~a~~~L~~l~s~~~~~---~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i  336 (684)
                      ..+..+...|+..|++++..--+.   ...-.+..++.+|..++.+....++++..+.++.++.....    .-+.. +.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkS-GW 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKS-GW 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhc-Cc
Confidence            446788999999998876543211   11123446778888888766668999999999999886222    22233 46


Q ss_pred             HHHHHhcC----CCChHHHHHHHHHHHHhhCC
Q 035507          337 PIFVKLLA----SPSDDVREQAVWALGNVAAD  364 (684)
Q Consensus       337 ~~Li~lL~----~~~~~v~~~a~~~L~nLa~~  364 (684)
                      +.+..++.    ..++.+.+.|..++..|..+
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence            66666665    35788888899888888754

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.77  E-value=5.7  Score=41.80  Aligned_cols=274  Identities=17%  Similarity=0.137  Sum_probs=136.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHH-HHHhhCCCCCCch
Q 035507          293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWA-LGNVAADSSGCRD  370 (684)
Q Consensus       293 i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~-L~nLa~~~~~~r~  370 (684)
                      +..+++=|.+.....+|..++--|..-+. +++.+..+..+|.+..+++.+.. ++..+...++.+ +.-++.+.+. ..
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hh
Confidence            44555556544436788888888888887 89999999999999999998854 444244444444 4444444432 33


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChh-hhhchHHHHHHHhc---------CCcHHHHHHHHH
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFD-QVRPALPALAQLIH---------SNDEQVLTDACW  440 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~-~~~~~l~~L~~lL~---------~~d~~v~~~al~  440 (684)
                      .+...+....++.++.-...........        ........ ........+...+.         +....-+..++.
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~--------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD--------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh--------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            3334455555566664000000000000        00000000 00111111111110         011112222333


Q ss_pred             HHHhhcc-------------CCChHHHHHHHHhchHHHHHHhcC----CC-------C-----cccHhHHHHHHHHHHcC
Q 035507          441 ALFGLSG-------------DRNNDKIQAVIEAGVCGRLVELLG----HP-------S-----PSVLTPALWTVGNIVMG  491 (684)
Q Consensus       441 ~L~~L~~-------------~~~~~~~~~~~~~g~l~~L~~lL~----~~-------~-----~~v~~~al~~L~nl~~~  491 (684)
                      ++-.++.             ...+...+.+...|++..++.++.    ..       .     ......++++|-+.+..
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            3322210             111122445666678888888774    11       1     12344577888888766


Q ss_pred             ChhhHHHHHhc--CChHHHHHHh-ccCC--ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh-------c---
Q 035507          492 DDFQTQCIINH--GAVPCLLALL-IHNH--KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL-------Q---  556 (684)
Q Consensus       492 ~~~~~~~~i~~--g~l~~L~~lL-~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll-------~---  556 (684)
                      ++......+..  +.++.+...+ ....  ...+...+...+.|++-+++.....+...++...+..+.       .   
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            66555544432  3333333332 2220  234456788899999988777666665443322222111       1   


Q ss_pred             ----cCCHhHHHHHHHHHHHhhcC
Q 035507          557 ----NAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       557 ----~~~~~v~~~a~~aL~nl~~~  576 (684)
                          ....+..--+..++.|++..
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEH  356 (361)
T ss_pred             cccccccchHHHHHHHhHHHheee
Confidence                12355666677777777764

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.73  E-value=1.2  Score=40.58  Aligned_cols=136  Identities=14%  Similarity=0.151  Sum_probs=93.8

Q ss_pred             CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH-HhCCHHH
Q 035507          472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI-DAGLIGP  550 (684)
Q Consensus       472 ~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~g~l~~  550 (684)
                      ...+++|..|.-++..+.   +...+ -...-+-+.+-..+... +.+-...++.+++.+--+.++....++ ..|+++.
T Consensus        16 ~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~   90 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES   90 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence            456788999988888885   21222 12222344555556555 556777888899999888888877776 6788999


Q ss_pred             HHHHhc--cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChH-HHHHHHHHHHH
Q 035507          551 LVNLLQ--NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPK-IVTVCLEGLEN  615 (684)
Q Consensus       551 Li~ll~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~-v~~~al~~L~~  615 (684)
                      +..++.  ..+..++..++.++..-+.  +...+.. +...+++.|.+..+. ++.. ++..++-+|.+
T Consensus        91 l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   91 LLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            999998  6789999999999988876  4444444 445578999999964 4444 56666655543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=92.50  E-value=16  Score=38.67  Aligned_cols=307  Identities=14%  Similarity=0.141  Sum_probs=155.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCC--CcHHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHHhcCCchh
Q 035507          259 WSDDNNLQLEATTQFQKLLSIES--MPIEEVIESGVVPRFVEFLM----R------EDYPQLQFQAAWALTNIASGTSEN  326 (684)
Q Consensus       259 ~s~~~~~~~~a~~~L~~l~s~~~--~~~~~ii~~g~i~~Lv~lL~----~------~~~~~v~~~A~~~L~~l~~~~~~~  326 (684)
                      .+.+.+.+..|-..|.+.+....  +....+.  .-++.+++.++    +      +.+..+..+|+.+|+.+.. +++.
T Consensus         3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i   79 (372)
T PF12231_consen    3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI   79 (372)
T ss_pred             CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence            34455666667666666665544  3333332  22344444432    1      1136888899999999887 5554


Q ss_pred             HHHHHhcC---ChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---c-CCchHHHHHH
Q 035507          327 TKVVIEHD---AVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---E-HTELSMLRIA  397 (684)
Q Consensus       327 ~~~i~~~g---~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---~-~~~~~v~~~a  397 (684)
                      ...+-+..   .+...+..+.+  .+..+...++|+|..=     .+...+.....+..++..+.   + -.+..+....
T Consensus        80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q-----~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er  154 (372)
T PF12231_consen   80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ-----KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISER  154 (372)
T ss_pred             HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence            44443322   34555555544  3456667777777652     12223444444555555442   2 4456777788


Q ss_pred             HHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc-CCCh-HHHHH---HHH----hc-----hH
Q 035507          398 TTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG-DRNN-DKIQA---VIE----AG-----VC  463 (684)
Q Consensus       398 ~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~-~~~~-~~~~~---~~~----~g-----~l  463 (684)
                      +.++.++....|.........-+|.++..+-+....++..|...+..+.. -+.+ .....   ..+    .+     +.
T Consensus       155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~  234 (372)
T PF12231_consen  155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC  234 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence            88888888776554444445567777776667777777766555443331 1111 11111   111    12     34


Q ss_pred             HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh---cCChHHHH
Q 035507          464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA---CGNREQIQ  540 (684)
Q Consensus       464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~---~~~~~~~~  540 (684)
                      +.+..++.+++.....+-+|..--+.-+++.....-.-...+...-..+.++ ++.+|.+|..+=..+.   ..+.....
T Consensus       235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~  313 (372)
T PF12231_consen  235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP  313 (372)
T ss_pred             HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence            4466666664444444444443333223321110011112444444556777 8888888765433332   22222222


Q ss_pred             HHHHhCCHHHHHHHhccC-CH----hHHHHHHHHHHHhhc
Q 035507          541 AVIDAGLIGPLVNLLQNA-EF----DIKEEAAWAISNASS  575 (684)
Q Consensus       541 ~l~~~g~l~~Li~ll~~~-~~----~v~~~a~~aL~nl~~  575 (684)
                      ..+.. +..++...+... ..    +++..+...++++..
T Consensus       314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            22222 223334344433 33    566666666666654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.44  E-value=3.5  Score=44.24  Aligned_cols=157  Identities=17%  Similarity=0.172  Sum_probs=112.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHhcCCchh
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED---YPQLQFQAAWALTNIASGTSEN  326 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~---~~~v~~~A~~~L~~l~~~~~~~  326 (684)
                      ....+.+.+.+++...|..|+..+.. ++.+.....+++...++..|.+++.++.   +.++....+.++..+..+.- .
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~s-ls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDS-LSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhh-ccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence            45788889999999999988888877 5556677888999999999999998865   23555556666666555322 1


Q ss_pred             HHHHHhcCChHHHHHhcC--CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          327 TKVVIEHDAVPIFVKLLA--SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       327 ~~~i~~~g~i~~Li~lL~--~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      .-..+...+|.....+..  ..+..+-..|+..|-++...++..++.+.+.-.+..++..+ +..+..+...|...+..+
T Consensus       162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence            111122233444444432  24566778899999999888877788888888899999999 677777777788777777


Q ss_pred             ccCCC
Q 035507          405 CRGKP  409 (684)
Q Consensus       405 ~~~~~  409 (684)
                      ....+
T Consensus       241 ~~~a~  245 (713)
T KOG2999|consen  241 FRKAP  245 (713)
T ss_pred             HhhCC
Confidence            76653

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.33  E-value=33  Score=41.78  Aligned_cols=151  Identities=11%  Similarity=0.116  Sum_probs=86.1

Q ss_pred             HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh---ccC--CC-----hhHHHHHHHHHHHHhcC-
Q 035507          466 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL---IHN--HK-----NSIKKEVSWIISNIACG-  534 (684)
Q Consensus       466 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL---~~~--~~-----~~v~~~a~~~L~nl~~~-  534 (684)
                      |++++..........|+.|++.++..-......+.+  ++..+.+.+   ++.  ++     ...-....++++-++++ 
T Consensus      1126 L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~--cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryf 1203 (1692)
T KOG1020|consen 1126 LLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKA--CFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYF 1203 (1692)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHH--HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhc
Confidence            333333345566778888999988743223333322  333333333   221  12     12334456777777652 


Q ss_pred             --------Ch--HHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChH
Q 035507          535 --------NR--EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK  604 (684)
Q Consensus       535 --------~~--~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~  604 (684)
                              ..  .+.......+++..|.......+..+|..|+.+++.++...    -.+|.+..+...+...+.+.+.+
T Consensus      1204 df~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~h----p~l~~~~~v~nly~~ila~~n~~ 1279 (1692)
T KOG1020|consen 1204 DFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQH----PSLFTSREVLNLYDEILADDNSD 1279 (1692)
T ss_pred             cCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhC----chhhhhHHHHHHHHHHHhhhccc
Confidence                    11  11122344567778888888889999999999999998743    23444555566666666654333


Q ss_pred             --HHHHHHHHHHHHHhcccc
Q 035507          605 --IVTVCLEGLENILKVGEA  622 (684)
Q Consensus       605 --v~~~al~~L~~il~~~~~  622 (684)
                        ....++..+..++..+++
T Consensus      1280 ~~~ki~~l~n~~~yL~eee~ 1299 (1692)
T KOG1020|consen 1280 IKSKIQLLQNLELYLLEEEK 1299 (1692)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence              256666666666655443

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.30  E-value=37  Score=42.43  Aligned_cols=273  Identities=15%  Similarity=0.122  Sum_probs=144.2

Q ss_pred             hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChh
Q 035507          336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFD  414 (684)
Q Consensus       336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~  414 (684)
                      +..++..+..+++..+-.+..+++.++..-+..   ..-....+..+..+....|+-.+..-..+++.+-+.. .-....
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            455566667788888888999999998654331   1112345667777766667766666666777776665 233334


Q ss_pred             hhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCc---ccHh-----------
Q 035507          415 QVRPALPALAQLIHSN-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP---SVLT-----------  479 (684)
Q Consensus       415 ~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~---~v~~-----------  479 (684)
                      .....+..+..+.+++ +|.|+.+++.++..+. +.........++ -.+..+..+|-+..+   ++..           
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~-~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALIL-DSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHH-cCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            4456677777777754 5699999999999999 544333332222 233444444433211   1111           


Q ss_pred             --HHHHHHHHHHcCChh--hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh
Q 035507          480 --PALWTVGNIVMGDDF--QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL  555 (684)
Q Consensus       480 --~al~~L~nl~~~~~~--~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll  555 (684)
                        ....++|+=..++..  .+.. +....+-...-++.++ ++.++.+|..++-++.--.+.+...   .-+++.|..++
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLL 1107 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHh
Confidence              111222222222221  1111 1111222333334455 7889999999998886433332211   11455666655


Q ss_pred             ccCCHhHHHHHHHHHHHhhcCCCHHH----------------HHH-HH-HCCChHHHHhhcc-CCChHHHHHHHHHHHHH
Q 035507          556 QNAEFDIKEEAAWAISNASSRGTHDQ----------------IKY-LV-TEGCIKPLCDLLQ-CADPKIVTVCLEGLENI  616 (684)
Q Consensus       556 ~~~~~~v~~~a~~aL~nl~~~~~~~~----------------~~~-l~-~~g~l~~L~~lL~-~~~~~v~~~al~~L~~i  616 (684)
                      ...-.-.+.....++..+......+.                -.. .. +.|.=-.+..+++ ..|.+....+++++.++
T Consensus      1108 ~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~ 1187 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRM 1187 (2067)
T ss_pred             cchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            54433333333333333332111100                000 11 3444444555554 45777888888888874


Q ss_pred             Hh
Q 035507          617 LK  618 (684)
Q Consensus       617 l~  618 (684)
                      +.
T Consensus      1188 ~~ 1189 (2067)
T KOG1822|consen 1188 LN 1189 (2067)
T ss_pred             HH
Confidence            43

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.29  E-value=5.3  Score=42.87  Aligned_cols=165  Identities=12%  Similarity=0.091  Sum_probs=112.3

Q ss_pred             hHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCc----ccHhHHHHHHHHHHcCChh
Q 035507          419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP----SVLTPALWTVGNIVMGDDF  494 (684)
Q Consensus       419 ~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~----~v~~~al~~L~nl~~~~~~  494 (684)
                      ....+...+.+++...+..++..+..++  .+......++....+..|..++.++..    .+...+++++..+....-.
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls--~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLS--LDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcc--ccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            3455777888888888888999999988  677788889999999999999987643    4445555555555433211


Q ss_pred             hHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507          495 QTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA  573 (684)
Q Consensus       495 ~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl  573 (684)
                      .-. .+...++.....+..-. .+..+-..|...|-++..++....+.+.+.--+..|+..++..+..++..|...+..+
T Consensus       162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            111 11111222222332111 1456777888888888888777777777777799999999999999998888888778


Q ss_pred             hcCCCHHHHHHHH
Q 035507          574 SSRGTHDQIKYLV  586 (684)
Q Consensus       574 ~~~~~~~~~~~l~  586 (684)
                      ...+.++.+..+.
T Consensus       241 ~~~a~~~~R~~~~  253 (713)
T KOG2999|consen  241 FRKAPDDKRFEMA  253 (713)
T ss_pred             HhhCChHHHHHHH
Confidence            7766655444433

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.07  E-value=11  Score=37.88  Aligned_cols=204  Identities=11%  Similarity=0.097  Sum_probs=132.7

Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc-C-CHHHHHHHhccCC-chHHHHHHHHHHHHh
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE-G-ALIPLLAQLNEHT-ELSMLRIATTTLSNL  404 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~-g-~l~~Ll~~L~~~~-~~~v~~~a~~~L~nL  404 (684)
                      ..+.++|.+..++..+...+-+-+..++.+..|+-+..-+.|....+. . -...+..++.... .+++.-.+...+...
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc  152 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC  152 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            345678999999999998888888889999988875443333222110 0 1122222232222 255555555555555


Q ss_pred             ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhch----HHHHHHhcCCCCcccHhH
Q 035507          405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGV----CGRLVELLGHPSPSVLTP  480 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~v~~~  480 (684)
                      .+...-......+.-+......++.+.-++..+|..+...+. ......+..+.....    .+.--.++.+.+--++..
T Consensus       153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~ll-t~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq  231 (342)
T KOG1566|consen  153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELL-TRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ  231 (342)
T ss_pred             HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHH-HHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence            555322223333555556666667777789999999998887 444444444444432    333667788899999999


Q ss_pred             HHHHHHHHHcCChh---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          481 ALWTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       481 al~~L~nl~~~~~~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      +...+|.+..+.+.   .++.+-...-+..++.+|.++ +..+|-+|..+..-..+
T Consensus       232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            99999999865542   234444446788999999999 99999999988887776

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=91.76  E-value=31  Score=40.22  Aligned_cols=114  Identities=12%  Similarity=0.144  Sum_probs=71.3

Q ss_pred             CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccC
Q 035507          547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNT  626 (684)
Q Consensus       547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~  626 (684)
                      +...+...+..++....+....++.++..-......+   ...-+++-..-.+..-..+...+..+|.++.....     
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~-----  513 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP-----  513 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence            4556666677778888888888888886521110000   01111111111122222344555555555555533     


Q ss_pred             CCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 035507          627 DSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGR  675 (684)
Q Consensus       627 ~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e  675 (684)
                             ......+.+.+....+-.+.-|+++++|+-|.+++...|+.+
T Consensus       514 -------~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~  555 (727)
T PF12726_consen  514 -------SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD  555 (727)
T ss_pred             -------HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence                   236678888888999999999999999999999999999744

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.72  E-value=15  Score=36.58  Aligned_cols=224  Identities=14%  Similarity=0.083  Sum_probs=133.2

Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC-CchHHHHHHHHHHHHhccCCCCCChhhh
Q 035507          338 IFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH-TELSMLRIATTTLSNLCRGKPRPLFDQV  416 (684)
Q Consensus       338 ~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~-~~~~v~~~a~~~L~nL~~~~~~~~~~~~  416 (684)
                      .|-..|.++++.+|..|+..|+.+...-+.  + .+....+..|+....+. .|......++.++..|.+.. .......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~--~-~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPP--D-FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCH--h-hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence            455678889999999999999998866543  1 12333456666555322 35555555677777776443 2222223


Q ss_pred             hchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCCh
Q 035507          417 RPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDD  493 (684)
Q Consensus       417 ~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~  493 (684)
                      ..++..+.+-..  +--...+..+...+..+. .......+ -...+++..+++.+.. .+|.-...+...+..+...-+
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~-~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLL-ENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH-HHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            344444443222  223667888888888887 43322221 1223577777887765 466666777777777765444


Q ss_pred             hhHHHHHhcCChHHHHHHh--------ccCC-Ch--hHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhH
Q 035507          494 FQTQCIINHGAVPCLLALL--------IHNH-KN--SIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDI  562 (684)
Q Consensus       494 ~~~~~~i~~g~l~~L~~lL--------~~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v  562 (684)
                      -       ....+.+...+        ..+. ++  -.+..-..+|.+....++...     .-.+|.|++=|.++...+
T Consensus       157 ~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~  224 (262)
T PF14500_consen  157 I-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSV  224 (262)
T ss_pred             c-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHH
Confidence            1       12233333333        1111 22  234445556666655554432     236899999999999999


Q ss_pred             HHHHHHHHHHhhcCCCH
Q 035507          563 KEEAAWAISNASSRGTH  579 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~  579 (684)
                      |..++.+|..++..-..
T Consensus       225 K~D~L~tL~~c~~~y~~  241 (262)
T PF14500_consen  225 KLDSLQTLKACIENYGA  241 (262)
T ss_pred             HHHHHHHHHHHHHHCCH
Confidence            99999999988864433

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=91.43  E-value=42  Score=41.02  Aligned_cols=143  Identities=10%  Similarity=0.075  Sum_probs=94.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESM-PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~-~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      .+..++..+..+-..+|-.|+++|..+...++. .....+..|+.    .-+.+.. ..||+.|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            456777777777789999999999999988761 11222333333    3334445 68999999999977664554443


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc--CCchHHHHHHHHHHHHhcc
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--HTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--~~~~~v~~~a~~~L~nL~~  406 (684)
                      ...     ..+..-+.++...||..++.++..+|...|.+-..      ......++..  +....++.-++.++.++--
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            332     34455556678899999999999999888875332      2333334432  2233478888888888776


Q ss_pred             CC
Q 035507          407 GK  408 (684)
Q Consensus       407 ~~  408 (684)
                      .+
T Consensus       961 ~p  962 (1692)
T KOG1020|consen  961 TP  962 (1692)
T ss_pred             cC
Confidence            65

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=91.06  E-value=27  Score=38.20  Aligned_cols=252  Identities=12%  Similarity=0.083  Sum_probs=136.7

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH
Q 035507          262 DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK  341 (684)
Q Consensus       262 ~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~  341 (684)
                      ..+.|..|...+..++......... ..    ..+.+.+..+..++.-..-+.+|..++.+..+.  ...+.+..+.|..
T Consensus        42 p~e~R~~~~~ll~~~i~~~~~~~~~-~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~  114 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQDSSSGL-MR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLS  114 (464)
T ss_pred             CHHHHHHHHHHHHHHHHccccccHH-HH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHH
Confidence            4577888888888877665421110 01    122333333322322223344444455533333  2245666777776


Q ss_pred             hcCC---------------------------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHH
Q 035507          342 LLAS---------------------------PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSML  394 (684)
Q Consensus       342 lL~~---------------------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~  394 (684)
                      .|..                           .+.......+..+.|+...+...-+.-.-.+.+..++..+....+....
T Consensus       115 wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di  194 (464)
T PF11864_consen  115 WLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI  194 (464)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH
Confidence            6531                           1223344556666666655543222222234455566666566666666


Q ss_pred             HHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--
Q 035507          395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--  472 (684)
Q Consensus       395 ~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--  472 (684)
                      +.++..+-.+.... ..+......++..|.......  +....+-.++.||+ ..... .      ..+..|..+|..  
T Consensus       195 ~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~-~S~~g-~------~~i~~L~~iL~~~~  263 (464)
T PF11864_consen  195 EACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLL-KSHLG-H------SAIRTLCDILRSPD  263 (464)
T ss_pred             HHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHH-cCccH-H------HHHHHHHHHHcccC
Confidence            77777777666654 222334455555555553333  56666777888888 32211 1      245667777732  


Q ss_pred             ----CCcccHhHHHHHHHHHHcCChhhHHHHHhc---CChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507          473 ----PSPSVLTPALWTVGNIVMGDDFQTQCIINH---GAVPCLLALLIHNHKNSIKKEVSWIISNIA  532 (684)
Q Consensus       473 ----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~---g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  532 (684)
                          ++..+..-|+..++.+..+.......-+..   -+++.+...+... +..+-.+....+.++.
T Consensus       264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL  329 (464)
T ss_pred             ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence                234456678888888887663222211221   2678888888877 6767777777777765

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=90.72  E-value=2.5  Score=39.88  Aligned_cols=124  Identities=14%  Similarity=0.097  Sum_probs=79.6

Q ss_pred             CCcHHHHHHHHHHHHhhccCCChHHHHHHHH----------------hchHHHHHHhcCC------CCcccHhHHHHHHH
Q 035507          429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIE----------------AGVCGRLVELLGH------PSPSVLTPALWTVG  486 (684)
Q Consensus       429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~----------------~g~l~~L~~lL~~------~~~~v~~~al~~L~  486 (684)
                      .++......++..|+|++ ..+ .....+++                ...+..|+.++..      ....-....+.++.
T Consensus         6 ~~~~~~adl~~MLLsNlT-~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLT-RSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             CCCcchHHHHHHHHHHhc-cch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            344455666778888888 433 33332222                2356677777654      23445567788999


Q ss_pred             HHHcCChhhHHHHHhc--CC--hHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH--hCCHHHHHHHhc
Q 035507          487 NIVMGDDFQTQCIINH--GA--VPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID--AGLIGPLVNLLQ  556 (684)
Q Consensus       487 nl~~~~~~~~~~~i~~--g~--l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~g~l~~Li~ll~  556 (684)
                      |++... ..++.+++.  +.  +..|+..+.+. +..-|.-++.+|.|+|-....+-..+-+  .+++|.|+--+.
T Consensus        84 NlS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   84 NLSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HhcCCH-HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            998754 477777754  33  77888888888 7777888899999999876555333322  466777666554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=90.64  E-value=10  Score=40.63  Aligned_cols=255  Identities=12%  Similarity=0.124  Sum_probs=139.1

Q ss_pred             HHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CC
Q 035507          270 TTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PS  347 (684)
Q Consensus       270 ~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~  347 (684)
                      -..|.+++...+ .+....++...+..|+.++.+++ +.-|.....+|..+-......|..+.. .+...+.+++.. ..
T Consensus       111 Y~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~  188 (409)
T PF01603_consen  111 YEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETER  188 (409)
T ss_dssp             HHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccc
Confidence            344444444332 22333556677889999999998 999999999999988756666665543 345556666654 34


Q ss_pred             hHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHH
Q 035507          348 DDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQL  426 (684)
Q Consensus       348 ~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~l  426 (684)
                      ..-...++..++.+..+-. ..++.... -....++.+.....-.........++..++..+|.    ....++..+++.
T Consensus       189 ~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~  263 (409)
T PF01603_consen  189 HNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKH  263 (409)
T ss_dssp             -STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHh
Confidence            4455678888888876532 22221110 01122233332222233344555555555554331    112223333333


Q ss_pred             hcCCcHHHHHHHHHHHHhhccCC-ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc---
Q 035507          427 IHSNDEQVLTDACWALFGLSGDR-NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH---  502 (684)
Q Consensus       427 L~~~d~~v~~~al~~L~~L~~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~---  502 (684)
                      =-..+..-..--+.-+..+. .. ++.....+ ...++..+..++.+++..|.+.|+..+.|=     ... .++..   
T Consensus       264 WP~t~s~Kev~FL~el~~il-~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~-~li~~~~~  335 (409)
T PF01603_consen  264 WPKTNSQKEVLFLNELEEIL-EVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFL-SLISQNSR  335 (409)
T ss_dssp             S-SS-HHHHHHHHHHHHHHH-TT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHH-HHHHCTHH
T ss_pred             CCCCCchhHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHH-HHHHhChH
Confidence            22445555555556666666 33 22333322 234778888899999999988888765442     111 12211   


Q ss_pred             CChHHHHHHhc-----cCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507          503 GAVPCLLALLI-----HNHKNSIKKEVSWIISNIACGNREQIQ  540 (684)
Q Consensus       503 g~l~~L~~lL~-----~~~~~~v~~~a~~~L~nl~~~~~~~~~  540 (684)
                      .++|.+..-+.     +- +..+|..|..++.-+..-+++...
T Consensus       336 ~i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  336 VILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             HHHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence            25666666663     33 678999999999988876655443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=90.56  E-value=24  Score=39.50  Aligned_cols=160  Identities=14%  Similarity=0.091  Sum_probs=102.6

Q ss_pred             ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHh-cCCCCcccHhHHHHHHHHHHc
Q 035507          412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL-LGHPSPSVLTPALWTVGNIVM  490 (684)
Q Consensus       412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~  490 (684)
                      .......++|.|..-+.+.+..+++.++..+...+ +.-+   -..+..-++|++..+ +.+.+..++..++-|++.++.
T Consensus       383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~-e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q  458 (700)
T KOG2137|consen  383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVA-ESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ  458 (700)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHH-Hhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence            34456788999999999999999999999998888 3322   234555678888877 355778899999999999983


Q ss_pred             CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHH--HHHH
Q 035507          491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKE--EAAW  568 (684)
Q Consensus       491 ~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~--~a~~  568 (684)
                      .-+  ...+++  .+..+.+..... ++.+......+..++....... ..++...++|.++-+...+.....+  ..+.
T Consensus       459 ~lD--~~~v~d--~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~  532 (700)
T KOG2137|consen  459 RLD--KAAVLD--ELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMS  532 (700)
T ss_pred             HHH--HHHhHH--HHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHH
Confidence            322  111222  344444555556 7777777777766665532222 3455567899999887766433332  2334


Q ss_pred             HHHHhhcCCCHHH
Q 035507          569 AISNASSRGTHDQ  581 (684)
Q Consensus       569 aL~nl~~~~~~~~  581 (684)
                      .+..+...-.+.+
T Consensus       533 ~i~~ml~~ie~~~  545 (700)
T KOG2137|consen  533 EIRLMLSAIEKPR  545 (700)
T ss_pred             HHHHHHhhhhHHH
Confidence            4444444333333

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=90.56  E-value=34  Score=43.49  Aligned_cols=269  Identities=9%  Similarity=0.083  Sum_probs=147.1

Q ss_pred             CCCChHHHHHHHHHHHHhhCCCCC---CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchH
Q 035507          344 ASPSDDVREQAVWALGNVAADSSG---CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPAL  420 (684)
Q Consensus       344 ~~~~~~v~~~a~~~L~nLa~~~~~---~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l  420 (684)
                      .+++..++-.|+..|..++..--.   ....-.+...+.|+...+....+.+++..++.++.++..............++
T Consensus      1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076       1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred             CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence            345677888888888887742221   11111233467888888877888899999999999887664322222223344


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHH--hc----hHHHHHHhcCCC-CcccHhHHHHHHHHHHc---
Q 035507          421 PALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIE--AG----VCGRLVELLGHP-SPSVLTPALWTVGNIVM---  490 (684)
Q Consensus       421 ~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~--~g----~l~~L~~lL~~~-~~~v~~~al~~L~nl~~---  490 (684)
                      ..+.......++.+...|..++..+. ..   ....+..  .+    .+..+..+.... +.++-..|+..+.+++.   
T Consensus      1227 ~VLs~aa~d~~e~iV~lAFetl~~I~-~d---~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076       1227 MVFTTAAYDDHKNIVLLAFEIIEKII-RE---YFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHH-Hh---hhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence            44443444667888888888887776 21   1111111  12    333344443332 35666677777765521   


Q ss_pred             -CCh-----------------------hhH-----HHHHhcCChHHHHHH---hccCCChhHHHHHHHHHHHHhc--C--
Q 035507          491 -GDD-----------------------FQT-----QCIINHGAVPCLLAL---LIHNHKNSIKKEVSWIISNIAC--G--  534 (684)
Q Consensus       491 -~~~-----------------------~~~-----~~~i~~g~l~~L~~l---L~~~~~~~v~~~a~~~L~nl~~--~--  534 (684)
                       +.-                       ...     ........+|.|..+   ..++ +.+||..|..+|-.+..  |  
T Consensus      1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhcc
Confidence             100                       000     000011234444443   4555 89999999999988764  2  


Q ss_pred             -ChHHHHHHHHhCCHHHHHHHhccC-------------------C-------HhHHHHHHHHHHHhhcCCCHHHHHHHH-
Q 035507          535 -NREQIQAVIDAGLIGPLVNLLQNA-------------------E-------FDIKEEAAWAISNASSRGTHDQIKYLV-  586 (684)
Q Consensus       535 -~~~~~~~l~~~g~l~~Li~ll~~~-------------------~-------~~v~~~a~~aL~nl~~~~~~~~~~~l~-  586 (684)
                       +++.-..++. +++.+++..+...                   +       .++...|+..+.++..    .+...+- 
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft----~fFd~L~~ 1456 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV----KFYPTVNP 1456 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence             3334444444 4555555555321                   0       1222233333333332    1222221 


Q ss_pred             -HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          587 -TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       587 -~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                       =.+++..|..+...++..+......+|.+++..+..
T Consensus      1457 ~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1457 LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence             134566666666777888888888888888765443

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=90.47  E-value=24  Score=36.62  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=112.2

Q ss_pred             HHHHHHhcCCCCcccHhHHHHHHHHHHc-CChhhHHHHHhc-C-ChHHHHHHhccCC----C--------hhHHHHHHHH
Q 035507          463 CGRLVELLGHPSPSVLTPALWTVGNIVM-GDDFQTQCIINH-G-AVPCLLALLIHNH----K--------NSIKKEVSWI  527 (684)
Q Consensus       463 l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~i~~-g-~l~~L~~lL~~~~----~--------~~v~~~a~~~  527 (684)
                      +..+...|......+..++++.+..++. ......+.+... . -.+.+.+++....    +        +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788888999888899999999999998 555666666643 1 2345555553220    1        2788877755


Q ss_pred             H-HHHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC---CHHHHHHHHHCCChHHHHhhccCCC
Q 035507          528 I-SNIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG---THDQIKYLVTEGCIKPLCDLLQCAD  602 (684)
Q Consensus       528 L-~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~~g~l~~L~~lL~~~~  602 (684)
                      + +.+..+++..+..+++ .+.+..+.+-|..+++++....+.++..-+...   .......+.+...+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            4 4455577777766664 567888888888888999999998888544322   2333444556668899999888877


Q ss_pred             h----HHHHHHHHHHHHHHhc
Q 035507          603 P----KIVTVCLEGLENILKV  619 (684)
Q Consensus       603 ~----~v~~~al~~L~~il~~  619 (684)
                      +    .+...+.+.|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    8899999999888854

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=90.34  E-value=21  Score=35.65  Aligned_cols=214  Identities=16%  Similarity=0.133  Sum_probs=122.9

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHh
Q 035507          296 FVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVL  373 (684)
Q Consensus       296 Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~  373 (684)
                      |=..|.+++ +.+|..|+..|+.+...-+...   ....-+..|+.++.+  .+......++.++..|.....-.     
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-----   74 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-----   74 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----
Confidence            445677777 8999999999999887444221   222235556665443  45555555677777777433211     


Q ss_pred             hcCCHHHHHHHhccC-----CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhcc
Q 035507          374 SEGALIPLLAQLNEH-----TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSG  447 (684)
Q Consensus       374 ~~g~l~~Ll~~L~~~-----~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~  447 (684)
                       .+....++..+.+.     .....+..+...+..+...........-...+..+++.+. ..||.-..-+...+..+. 
T Consensus        75 -~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~-  152 (262)
T PF14500_consen   75 -PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL-  152 (262)
T ss_pred             -hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-
Confidence             11133333333222     2334566666777766655321112222456666666666 457888777777777666 


Q ss_pred             CCChHHHHHHHHhchHHHHHHhcC--------C-C-C--cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC
Q 035507          448 DRNNDKIQAVIEAGVCGRLVELLG--------H-P-S--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN  515 (684)
Q Consensus       448 ~~~~~~~~~~~~~g~l~~L~~lL~--------~-~-~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~  515 (684)
                      ..-+      . ....+-+...+.        . + +  .-.+..--..|.+....++....     -.+|.|++-|.++
T Consensus       153 ~~~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~  220 (262)
T PF14500_consen  153 QEFD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDST  220 (262)
T ss_pred             Hhcc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCC
Confidence            3222      1 222333333331        1 1 1  12334444556555555553332     4789999999998


Q ss_pred             CChhHHHHHHHHHHHHhc
Q 035507          516 HKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       516 ~~~~v~~~a~~~L~nl~~  533 (684)
                       .+.++..+..+|..++.
T Consensus       221 -~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  221 -SPSVKLDSLQTLKACIE  237 (262)
T ss_pred             -CcHHHHHHHHHHHHHHH
Confidence             88899999999998876

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=90.31  E-value=0.73  Score=37.59  Aligned_cols=83  Identities=16%  Similarity=0.205  Sum_probs=63.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+...++.+.++.+-+|-.|+..|++++....  ....-..+++..+...|++++ +-+-..|+.+|..++...++    
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~----   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD----   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH----
Confidence            46778888999999999999999999998765  111223467888889999988 89999999999999984443    


Q ss_pred             HHhcCChHHHHHhc
Q 035507          330 VIEHDAVPIFVKLL  343 (684)
Q Consensus       330 i~~~g~i~~Li~lL  343 (684)
                          .+++.|++..
T Consensus        77 ----~vl~~L~~~y   86 (92)
T PF10363_consen   77 ----EVLPILLDEY   86 (92)
T ss_pred             ----HHHHHHHHHH
Confidence                2456666543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=90.19  E-value=6.8  Score=36.50  Aligned_cols=146  Identities=15%  Similarity=0.178  Sum_probs=91.8

Q ss_pred             ccHhHHHHHHHHHHcCCh-hh----HHHHHh------cCChHHHHH-HhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507          476 SVLTPALWTVGNIVMGDD-FQ----TQCIIN------HGAVPCLLA-LLIHNHKNSIKKEVSWIISNIACGNREQIQAVI  543 (684)
Q Consensus       476 ~v~~~al~~L~nl~~~~~-~~----~~~~i~------~g~l~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  543 (684)
                      ++|..|+.+|..++...+ ..    -..++-      .+.-+.|+. ++.++ ++++|..|+.++..+..+........-
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae   79 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAE   79 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence            367788888888876622 11    111111      123334444 45666 999999999999999887655444332


Q ss_pred             Hh-------------------CCHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh
Q 035507          544 DA-------------------GLIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP  603 (684)
Q Consensus       544 ~~-------------------g~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~  603 (684)
                      +.                   .+-..|+..++.+ +..+....+.++..++.....+..+.=.-..++..+..++.+.|+
T Consensus        80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~  159 (182)
T PF13251_consen   80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP  159 (182)
T ss_pred             hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence            21                   1234455555554 777888888999988875433322110111245666677788999


Q ss_pred             HHHHHHHHHHHHHHhcccc
Q 035507          604 KIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       604 ~v~~~al~~L~~il~~~~~  622 (684)
                      +++..++.++..++.....
T Consensus       160 ~v~v~~l~~~~~l~s~~~~  178 (182)
T PF13251_consen  160 NVRVAALSCLGALLSVQPP  178 (182)
T ss_pred             cHHHHHHHHHHHHHcCCCC
Confidence            9999999999988876543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.12  E-value=36  Score=38.08  Aligned_cols=235  Identities=12%  Similarity=0.033  Sum_probs=133.4

Q ss_pred             hhchHHHHHH-HhcCCcHHHHHHHHHHHHhhccCC--ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC-
Q 035507          416 VRPALPALAQ-LIHSNDEQVLTDACWALFGLSGDR--NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG-  491 (684)
Q Consensus       416 ~~~~l~~L~~-lL~~~d~~v~~~al~~L~~L~~~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~-  491 (684)
                      ..++++.++. .++.....+-...-..|++.. ..  .....+.++-.=.=|.|..-|+.++..+|..|+..+-++--- 
T Consensus       127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~-hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFH-HQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            3555555443 334333345555555566555 11  111122222222235566667888999999999999887532 


Q ss_pred             -Ch---hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhC----CHHHHHHHhc-cCCHhH
Q 035507          492 -DD---FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAG----LIGPLVNLLQ-NAEFDI  562 (684)
Q Consensus       492 -~~---~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g----~l~~Li~ll~-~~~~~v  562 (684)
                       .+   +..+.+++ .-...+.++|.++ -+.||..|...++.+....    ..++-..    ++..+..-+. +...+|
T Consensus       206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~V  279 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDV  279 (1005)
T ss_pred             CCCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchhe
Confidence             22   23344444 3456788999998 9999999998888775421    1122112    2222333222 235577


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHH
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEE  642 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~  642 (684)
                      |......|.-++.  ++..-.. .+. +++.+-..|.+....|+.++.+.|..|-.+-.               .....-
T Consensus       280 R~svf~gl~~~l~--np~sh~~-le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra---------------~~f~~I  340 (1005)
T KOG1949|consen  280 RCSVFKGLPMILD--NPLSHPL-LEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVRA---------------AKFWKI  340 (1005)
T ss_pred             ehhHhcCcHHHHc--CccchhH-HHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhhh---------------hhhhcc
Confidence            7777777776665  2221111 121 45566677778888999999988887655421               122221


Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 035507          643 AEGLEKIENLQSHDNNEIHEKSVKILETYWCGRV  676 (684)
Q Consensus       643 ~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~  676 (684)
                      +---+.|..|...+-+--+..+.-|+..||+...
T Consensus       341 ~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k  374 (1005)
T KOG1949|consen  341 CPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNK  374 (1005)
T ss_pred             ccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCC
Confidence            2222345555555555556778888888887654

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=90.04  E-value=22  Score=35.44  Aligned_cols=179  Identities=17%  Similarity=0.131  Sum_probs=104.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-------CchhHHHHHhcCChHHHHHhcCCCC----hHHHHHHHHHHH
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASG-------TSENTKVVIEHDAVPIFVKLLASPS----DDVREQAVWALG  359 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~-------~~~~~~~i~~~g~i~~Li~lL~~~~----~~v~~~a~~~L~  359 (684)
                      |+-+.+.+-+.++.   ....++..|..++..       +++.|-.+.-.+.+|.++.-+.+++    ......++..|+
T Consensus        64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La  140 (262)
T PF14225_consen   64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA  140 (262)
T ss_pred             hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence            34444444445444   344556666666552       2223333333456788888777766    234456778888


Q ss_pred             HhhCCCCCCchhHhhcCCHHHHHHHhccCC---chHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHH
Q 035507          360 NVAADSSGCRDLVLSEGALIPLLAQLNEHT---ELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLT  436 (684)
Q Consensus       360 nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~---~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~  436 (684)
                      .+|.....        ..+..++.......   ..+..+.++..|..-..  |.    .....+..++.++..+-+.++.
T Consensus       141 ~~a~~~~~--------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~  206 (262)
T PF14225_consen  141 QVAEAQGL--------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRR  206 (262)
T ss_pred             HHHHhCCC--------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHH
Confidence            88844321        12444444443332   23444444444443221  21    2245667788899888899999


Q ss_pred             HHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507          437 DACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD  492 (684)
Q Consensus       437 ~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  492 (684)
                      .++..|..+. ...+-...  ...+++..+.++++++   .-..|+.++-++...+
T Consensus       207 ~~L~iL~~ll-~~~d~~~~--~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s  256 (262)
T PF14225_consen  207 KTLQILKVLL-PHVDMRSP--HGADLISPLLRLLQTD---LWMEALEVLDEIVTRS  256 (262)
T ss_pred             HHHHHHHHHh-ccccCCCC--cchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhc
Confidence            9999999888 44333322  5556888899999765   4567777777765433

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.03  E-value=8.2  Score=42.75  Aligned_cols=187  Identities=12%  Similarity=0.085  Sum_probs=117.6

Q ss_pred             hHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh-----HHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507          419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNN-----DKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD  493 (684)
Q Consensus       419 ~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~-----~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  493 (684)
                      .-|.+.+-|...+..|+.+|+..+.++- .-.+     +..+.+++. -+..+..+|.++.+.+|..|..-+..+...- 
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~f-P~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f-  251 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAF-PIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKF-  251 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhc-cCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-
Confidence            3456667778889999999999988765 3221     222333332 3577899999999999999988777765421 


Q ss_pred             hhHHHHHhcCC----hHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHH
Q 035507          494 FQTQCIINHGA----VPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWA  569 (684)
Q Consensus       494 ~~~~~~i~~g~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~a  569 (684)
                         -.++-..+    +..+..-+......+||-.....|..++....  .-.+.+. ++|.+-..|.+....||-.+...
T Consensus       252 ---We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~--sh~~le~-~Lpal~~~l~D~se~VRvA~vd~  325 (1005)
T KOG1949|consen  252 ---WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL--SHPLLEQ-LLPALRYSLHDNSEKVRVAFVDM  325 (1005)
T ss_pred             ---HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--chhHHHH-HHHhcchhhhccchhHHHHHHHH
Confidence               12222222    23333333333256788888888888876421  1223333 57777788888889999888888


Q ss_pred             HHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507          570 ISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       570 L~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~  618 (684)
                      |..+=..    ....+..---.+.+..-|..++..+....+..+-+.+-
T Consensus       326 ll~ik~v----ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l  370 (1005)
T KOG1949|consen  326 LLKIKAV----RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL  370 (1005)
T ss_pred             HHHHHhh----hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence            8776431    11222233336677777777777777766666655543

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.88  E-value=2.3  Score=42.28  Aligned_cols=142  Identities=11%  Similarity=0.142  Sum_probs=94.6

Q ss_pred             HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507          463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV  542 (684)
Q Consensus       463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  542 (684)
                      +...+..|.+.++.....++..|..++...++.....+. .++..+++-+.+. ...|-+.||.+++.|...-...+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777888888888888888888766644433332 3555666667777 78899999999999987433444332


Q ss_pred             HHhCCHHHHHHHhcc---CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507          543 IDAGLIGPLVNLLQN---AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       543 ~~~g~l~~Li~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~  618 (684)
                      .+    ..+..++..   .+.-++..|-.||..++....+..        ++..|...+.+.++.++..+.....+...
T Consensus       168 ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  168 LD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             HH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccce
Confidence            22    222333333   245578889999999988666543        45667777888888887777666555443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=89.80  E-value=5.2  Score=45.70  Aligned_cols=197  Identities=18%  Similarity=0.145  Sum_probs=108.5

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC----CChHHHHHHHHHHHHhhCCCCC
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS----PSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      .+..+.+++....-  -...|++.|..+..........     .+..+..++.+    .++.++..|+.+++.++.....
T Consensus       396 av~~i~~~I~~~~~--~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKL--TDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCC--CHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            46666777766441  1233556666655532233333     34555666654    4677889999999988732100


Q ss_pred             ---------CchhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC---cH
Q 035507          368 ---------CRDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN---DE  432 (684)
Q Consensus       368 ---------~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~---d~  432 (684)
                               ..........++.+...+.   ...+..-+..++.+|+|+-.          ...++.+...+...   +.
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence                     1111222334566666664   34566777889999999854          25678888887765   68


Q ss_pred             HHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH
Q 035507          433 QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA  510 (684)
Q Consensus       433 ~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~  510 (684)
                      .++..|++++..+. ...++.        +.+.+.+++.+  .+..+|..|..+|..  + ++..       ..+..+..
T Consensus       539 ~~R~~Ai~Alr~~~-~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~-~P~~-------~~l~~i~~  599 (618)
T PF01347_consen  539 FIRVAAIQALRRLA-KHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMR--C-NPSP-------SVLQRIAQ  599 (618)
T ss_dssp             HHHHHHHHTTTTGG-GT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH--T----H-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-hcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh--c-CCCH-------HHHHHHHH
Confidence            89999999999887 444433        33556666644  345678877766633  2 2211       13556667


Q ss_pred             HhccCCChhHHHHH
Q 035507          511 LLIHNHKNSIKKEV  524 (684)
Q Consensus       511 lL~~~~~~~v~~~a  524 (684)
                      .+...++..|....
T Consensus       600 ~l~~E~~~QV~sfv  613 (618)
T PF01347_consen  600 SLWNEPSNQVASFV  613 (618)
T ss_dssp             HHTT-S-HHHHHHH
T ss_pred             HHhhCchHHHHHHH
Confidence            77655355555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=89.54  E-value=22  Score=34.80  Aligned_cols=139  Identities=23%  Similarity=0.213  Sum_probs=92.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhH
Q 035507          293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV  372 (684)
Q Consensus       293 i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i  372 (684)
                      ++.|+.-+....+++.+...+.+|..++.++.....     -++..+..+...+....+.-+...+..+-..++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            445555455555589999999999999985422222     235566666666776666667777777765543211   


Q ss_pred             hhcCCHHHHHHHh---------ccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh-cCCcHHHHHHHHHHH
Q 035507          373 LSEGALIPLLAQL---------NEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI-HSNDEQVLTDACWAL  442 (684)
Q Consensus       373 ~~~g~l~~Ll~~L---------~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L  442 (684)
                         +.+.+++..+         ......+.......++..+|...|.    .....++.+..++ .+.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               3455554441         1112234444556788889988765    4567788888888 788899999999999


Q ss_pred             Hhhc
Q 035507          443 FGLS  446 (684)
Q Consensus       443 ~~L~  446 (684)
                      ..++
T Consensus       147 ~~Lc  150 (234)
T PF12530_consen  147 APLC  150 (234)
T ss_pred             HHHH
Confidence            9999

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=89.22  E-value=7.1  Score=36.76  Aligned_cols=146  Identities=16%  Similarity=0.152  Sum_probs=91.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      -++.+.+...+.+..++..|+..+.-++...- .|..      .+|.++.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            35777888889999999999999988877654 3333      6899999999888 99999999999999985555444


Q ss_pred             HHHhcCChHHHHHh---cCCC-ChHH---HHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC-------chHHH
Q 035507          329 VVIEHDAVPIFVKL---LASP-SDDV---REQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT-------ELSML  394 (684)
Q Consensus       329 ~i~~~g~i~~Li~l---L~~~-~~~v---~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~-------~~~v~  394 (684)
                      .-...| +..-..+   +..+ ....   .......+..+...+...|..+     +..++..+....       ...-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            433334 2222221   1111 1111   4455666666666544444443     556666664322       23344


Q ss_pred             HHHHHHHHHhccCC
Q 035507          395 RIATTTLSNLCRGK  408 (684)
Q Consensus       395 ~~a~~~L~nL~~~~  408 (684)
                      ....++..||+.-+
T Consensus       156 ~~~~Fla~nLA~l~  169 (187)
T PF12830_consen  156 DFLLFLAENLATLP  169 (187)
T ss_pred             HHHHHHHHHHhcCC
Confidence            55556666666553

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=89.02  E-value=51  Score=38.31  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=82.8

Q ss_pred             ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh
Q 035507          476 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL  555 (684)
Q Consensus       476 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll  555 (684)
                      .++..+.-++++++-.++...+     ..+|.|++-|.......+|.+..-+++.+|.+.    ..+++ ..+|.+-..|
T Consensus       946 ~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d-~YiP~I~~~L 1015 (1529)
T KOG0413|consen  946 KVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTD-RYIPMIAASL 1015 (1529)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHH-HhhHHHHHHh
Confidence            4555666667777655543332     356777777766635556666666666665432    11233 3789999999


Q ss_pred             ccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC--ChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          556 QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEG--CIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       556 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g--~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      .++++-+|+.+...|.++...+   ..+   =.|  .+..+..++ +.+++++.-+-..+..++...+.
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~---~vK---w~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG---IVK---WNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhh---hhh---cchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhcCc
Confidence            9999999999999999998632   111   112  234444444 34677888887788877776543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=88.85  E-value=15  Score=38.74  Aligned_cols=241  Identities=18%  Similarity=0.204  Sum_probs=123.4

Q ss_pred             hHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHH-hccCCCCCCh
Q 035507          336 VPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSN-LCRGKPRPLF  413 (684)
Q Consensus       336 i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~n-L~~~~~~~~~  413 (684)
                      +.++++=+.+ ....+|..++.-|+.-+.+. .+|..+...|....++..+...++..+...++.++.. +++.......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            5566665553 45678888888888887755 5788999999999999999666555455555555544 4444343443


Q ss_pred             hhhhchHHHHHHHhcCC-cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc---------CCCCcccHhHHHH
Q 035507          414 DQVRPALPALAQLIHSN-DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL---------GHPSPSVLTPALW  483 (684)
Q Consensus       414 ~~~~~~l~~L~~lL~~~-d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL---------~~~~~~v~~~al~  483 (684)
                      .........+..++... ...+.....      .  ..........+ .....+...+         .+.....+..|+.
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~--~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S--SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------h--hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            33455566666666611 000000000      0  00000011110 1122222222         1233455667777


Q ss_pred             HHHHHHcC-----C---------hhhHHHHHhcCChHHHHHHhcc----C------CCh-----hHHHHHHHHHHHHhcC
Q 035507          484 TVGNIVMG-----D---------DFQTQCIINHGAVPCLLALLIH----N------HKN-----SIKKEVSWIISNIACG  534 (684)
Q Consensus       484 ~L~nl~~~-----~---------~~~~~~~i~~g~l~~L~~lL~~----~------~~~-----~v~~~a~~~L~nl~~~  534 (684)
                      ++-.++..     +         +...+.+...|++..++.++..    .      .++     ..-..+..+|-|.+..
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            77776411     0         1123445566788888888752    1      011     1223456666676654


Q ss_pred             ChHHHHHHHH--hCCHHHHHH----HhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 035507          535 NREQIQAVID--AGLIGPLVN----LLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVT  587 (684)
Q Consensus       535 ~~~~~~~l~~--~g~l~~Li~----ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  587 (684)
                      +.++-.++..  .+.++.+..    ........+...++..+.|++.. +++.+..+..
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s  310 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFAS  310 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhh
Confidence            4444444442  223332222    22222344456788888899874 4444444433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.73  E-value=5.7  Score=39.66  Aligned_cols=146  Identities=17%  Similarity=0.183  Sum_probs=102.8

Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhH
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT  496 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  496 (684)
                      ...+...+..|.+.|++...+++..+..++ ....+.....+. .++..+++-+++....+...|+.+++.+.+......
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs-~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i  164 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLS-EFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI  164 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHH-hhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677788899999999999999998 444444333333 366777888888888999999999999987665444


Q ss_pred             HHHHhcCChHHHHHHh-ccC--CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507          497 QCIINHGAVPCLLALL-IHN--HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA  573 (684)
Q Consensus       497 ~~~i~~g~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl  573 (684)
                      ..     -++.++..| ...  .+.-++..|-.+|..++.+-..+       .+++.|+..+....+.++..++.++.++
T Consensus       165 ~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  165 DQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             HH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence            43     233444433 222  14458888999998887643222       2577788888888999999888887777


Q ss_pred             hcC
Q 035507          574 SSR  576 (684)
Q Consensus       574 ~~~  576 (684)
                      ...
T Consensus       233 v~r  235 (334)
T KOG2933|consen  233 VIR  235 (334)
T ss_pred             cee
Confidence            653

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.26  E-value=12  Score=40.58  Aligned_cols=110  Identities=21%  Similarity=0.286  Sum_probs=79.3

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .+.+.-+++++.+.|..++..+++.++.+. ..-..++...-.|.+..|.+-+-+.. +.+|.+|+.+|+.+-..+....
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~-d~v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLS-DVVREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChH
Confidence            356778888888999999999999998754 33467778888888888887776666 7999999999998876322222


Q ss_pred             HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCC
Q 035507          328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      ..+     ...|..+++. |+.+||+.|   |.||..++..
T Consensus       168 n~~-----~n~l~~~vqnDPS~EVRr~a---llni~vdnsT  200 (885)
T COG5218         168 NRI-----VNLLKDIVQNDPSDEVRRLA---LLNISVDNST  200 (885)
T ss_pred             HHH-----HHHHHHHHhcCcHHHHHHHH---HHHeeeCCCc
Confidence            222     3456666655 788898765   5666655543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=88.02  E-value=2.1  Score=34.88  Aligned_cols=84  Identities=12%  Similarity=0.122  Sum_probs=63.2

Q ss_pred             HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507          463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV  542 (684)
Q Consensus       463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  542 (684)
                      +...+..+.++.+.+|..++..|..+....+  ....-..+++..+...+.++ ++-|=-.|..+++.++...++.    
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~----   77 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE----   77 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence            4566777889999999999999999998776  11112236778888889998 8889999999999998755442    


Q ss_pred             HHhCCHHHHHHHhcc
Q 035507          543 IDAGLIGPLVNLLQN  557 (684)
Q Consensus       543 ~~~g~l~~Li~ll~~  557 (684)
                          +++.|++...+
T Consensus        78 ----vl~~L~~~y~~   88 (92)
T PF10363_consen   78 ----VLPILLDEYAD   88 (92)
T ss_pred             ----HHHHHHHHHhC
Confidence                45666655543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=87.96  E-value=16  Score=38.54  Aligned_cols=146  Identities=14%  Similarity=0.064  Sum_probs=87.2

Q ss_pred             HHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc----cC-CChhHHHHHHHHHHH
Q 035507          457 VIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----HN-HKNSIKKEVSWIISN  530 (684)
Q Consensus       457 ~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~----~~-~~~~v~~~a~~~L~n  530 (684)
                      +.+..-.+.+-.-+.. +...-|.+|+..+..++.........++    ...+..++.    ++ .+..-+..|...++.
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            4444444555444443 3355677888899898865544333222    223333333    22 266777888888888


Q ss_pred             HhcCCh-------H-----HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 035507          531 IACGNR-------E-----QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL  598 (684)
Q Consensus       531 l~~~~~-------~-----~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL  598 (684)
                      ++....       .     .+..++...++|-|. --.+..+-++..|++.+..+-..-++++...     +++.+...|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence            876321       1     345566677788776 2234478899999999999987666554333     788999999


Q ss_pred             cCCChHHHHHHHHH
Q 035507          599 QCADPKIVTVCLEG  612 (684)
Q Consensus       599 ~~~~~~v~~~al~~  612 (684)
                      .+++.-|...|..+
T Consensus       356 ~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  356 QSSSYVVHTYAAIA  369 (370)
T ss_dssp             TSS-HHHHHHHHHH
T ss_pred             CCCCcchhhhhhhh
Confidence            99888777666554

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=87.87  E-value=27  Score=37.40  Aligned_cols=231  Identities=11%  Similarity=0.060  Sum_probs=125.5

Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      .++...+..|+.++.++|+.-|+....+|.++-+..+..|..+.. .....+...+.......-...++..++.+..+-.
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            344566889999999999999999999999998777776666543 2344555566555555666777888888888753


Q ss_pred             CCC-hhhhhchHHHHHHHhcCCc-HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          410 RPL-FDQVRPALPALAQLIHSND-EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       410 ~~~-~~~~~~~l~~L~~lL~~~d-~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      .+. .....-....++.+..... ...-.....++.... ..++.....     ++..++..=-..+..-...-+.-+..
T Consensus       208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~-~kdp~l~~~-----~i~~llk~WP~t~s~Kev~FL~el~~  281 (409)
T PF01603_consen  208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFL-EKDPSLAEP-----VIKGLLKHWPKTNSQKEVLFLNELEE  281 (409)
T ss_dssp             SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHH-HH-GGGHHH-----HHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-HhCchhHHH-----HHHHHHHhCCCCCchhHHHHHHHHHH
Confidence            232 2222333344555555443 222233333343333 222222221     22223332222333333444555666


Q ss_pred             HHcCCh-hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH---hCCHHHHHHHhcc----C-
Q 035507          488 IVMGDD-FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID---AGLIGPLVNLLQN----A-  558 (684)
Q Consensus       488 l~~~~~-~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~g~l~~Li~ll~~----~-  558 (684)
                      +....+ .....+ ...+...+...+.++ +..|.+.|.....|=      .+..++.   ..++|.+...+..    . 
T Consensus       282 il~~~~~~~f~~i-~~~lf~~la~ci~S~-h~qVAErAl~~w~n~------~~~~li~~~~~~i~p~i~~~L~~~~~~HW  353 (409)
T PF01603_consen  282 ILEVLPPEEFQKI-MVPLFKRLAKCISSP-HFQVAERALYFWNNE------YFLSLISQNSRVILPIIFPALYRNSKNHW  353 (409)
T ss_dssp             HHTT--HHHHHHH-HHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH------HHHHHHHCTHHHHHHHHHHHHSSTTSS-S
T ss_pred             HHHhcCHHHHHHH-HHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH------HHHHHHHhChHHHHHHHHHHHHHHHHHHh
Confidence            655433 222222 224667777788888 888888777654432      1122222   1256666666543    1 


Q ss_pred             CHhHHHHHHHHHHHhhc
Q 035507          559 EFDIKEEAAWAISNASS  575 (684)
Q Consensus       559 ~~~v~~~a~~aL~nl~~  575 (684)
                      +..++..|..++.-+..
T Consensus       354 n~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  354 NQTVRNLAQNVLKILME  370 (409)
T ss_dssp             STTHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            67788888888777765

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=87.58  E-value=7.4  Score=36.70  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=74.6

Q ss_pred             cCCCCcccHhHHHHHHHHHHcCChhhHHHHHh----------------cCChHHHHHHhccC-----CChhHHHHHHHHH
Q 035507          470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN----------------HGAVPCLLALLIHN-----HKNSIKKEVSWII  528 (684)
Q Consensus       470 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~----------------~g~l~~L~~lL~~~-----~~~~v~~~a~~~L  528 (684)
                      +.+++......++..|+|++.... ....+++                ...+..|+..+..+     ....--...+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            344556677788889999987554 3333332                12466777766541     1334456778899


Q ss_pred             HHHhcCChHHHHHHHHh--CC--HHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 035507          529 SNIACGNREQIQAVIDA--GL--IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVT  587 (684)
Q Consensus       529 ~nl~~~~~~~~~~l~~~--g~--l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  587 (684)
                      +|++.. ++.++.+.+.  +.  +..|+..+++.+..-|.-++.+|.|++-  +.+.-..|..
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF--d~~~H~~LL~  142 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF--DTDSHEWLLS  142 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc--cHhHHHHhcC
Confidence            999875 5777777743  33  7788888888877777788899999997  3333344443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=87.47  E-value=11  Score=42.64  Aligned_cols=137  Identities=18%  Similarity=0.138  Sum_probs=81.8

Q ss_pred             chHHHHHHHhcC----CcHHHHHHHHHHHHhhccC--CChHHHHHHHHhchHHHHHHhc----CCCCcccHhHHHHHHHH
Q 035507          418 PALPALAQLIHS----NDEQVLTDACWALFGLSGD--RNNDKIQAVIEAGVCGRLVELL----GHPSPSVLTPALWTVGN  487 (684)
Q Consensus       418 ~~l~~L~~lL~~----~d~~v~~~al~~L~~L~~~--~~~~~~~~~~~~g~l~~L~~lL----~~~~~~v~~~al~~L~n  487 (684)
                      ..+..+..++.+    ..+.+...++-+++.+...  .........+...+++.+...|    ...+...+..++++|||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            445566666664    3456677777777766510  1111100111123555555554    33455567789999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhc-cC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CHhHH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLI-HN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EFDIK  563 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~-~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~  563 (684)
                      +....           .++.+...+. .. .+..+|..|.|+|..++...+...        -+.++.++.+.  +.++|
T Consensus       473 ~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvR  533 (574)
T smart00638      473 AGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVR  533 (574)
T ss_pred             cCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHH
Confidence            86533           3444555554 11 256899999999999986555543        34556666553  78899


Q ss_pred             HHHHHHHHHh
Q 035507          564 EEAAWAISNA  573 (684)
Q Consensus       564 ~~a~~aL~nl  573 (684)
                      -.|..++...
T Consensus       534 iaA~~~lm~t  543 (574)
T smart00638      534 MAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHhc
Confidence            8888887655

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=87.20  E-value=22  Score=34.91  Aligned_cols=131  Identities=13%  Similarity=0.122  Sum_probs=70.1

Q ss_pred             HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC-ChhHHHHHHHHHHHHhcCChH
Q 035507          459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIACGNRE  537 (684)
Q Consensus       459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~  537 (684)
                      +...++.++++++.++..    .-..+|...+..-...-+.+-.|-++.|..++.++. +.-+|..|+.++..++...+.
T Consensus        71 e~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~  146 (249)
T PF06685_consen   71 EERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI  146 (249)
T ss_pred             hhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence            446789999999765541    112233322211111112223456777778887663 557899999999999987666


Q ss_pred             HHHHHHHhCCHHHHHHH-hccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 035507          538 QIQAVIDAGLIGPLVNL-LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC  595 (684)
Q Consensus       538 ~~~~l~~~g~l~~Li~l-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~  595 (684)
                      .+..+++  .+..++.. +...+..+-..-+..++.+-...--..++.+.+.|.++..+
T Consensus       147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~  203 (249)
T PF06685_consen  147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF  203 (249)
T ss_pred             CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence            6666665  34444444 43333332222223333332211223455556677765543

The function of this family is unknown.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=87.19  E-value=31  Score=33.74  Aligned_cols=138  Identities=20%  Similarity=0.106  Sum_probs=89.6

Q ss_pred             HHHHH-HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHH
Q 035507          421 PALAQ-LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCI  499 (684)
Q Consensus       421 ~~L~~-lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~  499 (684)
                      |.+.. +-+..+++.+...+.+|..++ ...+....     -++..+..+...+....+.-+.+.+..+...++...   
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~-~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLA-CHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHh-ccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            44333 556778999999999999999 44312222     245667777777766666778888888877666332   


Q ss_pred             HhcCChHHHHHH---------hccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh-ccCCHhHHHHHHHH
Q 035507          500 INHGAVPCLLAL---------LIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL-QNAEFDIKEEAAWA  569 (684)
Q Consensus       500 i~~g~l~~L~~l---------L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll-~~~~~~v~~~a~~a  569 (684)
                         +.+..++..         .......+.....+.++..++...++.-     ..+++.+..++ +..++.++..|..+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence               222222222         0111133455555677888887666622     23678888888 77788899999999


Q ss_pred             HHHhhc
Q 035507          570 ISNASS  575 (684)
Q Consensus       570 L~nl~~  575 (684)
                      +..++.
T Consensus       146 l~~Lc~  151 (234)
T PF12530_consen  146 LAPLCE  151 (234)
T ss_pred             HHHHHH
Confidence            999985

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=87.01  E-value=7  Score=35.94  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=77.8

Q ss_pred             chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhc---CC
Q 035507          461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH--GAVPCLLALLIHNHKNSIKKEVSWIISNIAC---GN  535 (684)
Q Consensus       461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~  535 (684)
                      ....++..+|+++++.-|-.++..+.-.+..++.  +.+.++  ..+..++++|+.+++..+++.|+.++..|..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4667889999999999999999999888876532  223232  3678889999887677889999999998864   45


Q ss_pred             hHHHHHHHHh---CCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          536 REQIQAVIDA---GLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       536 ~~~~~~l~~~---g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      ++....+...   ++++.++.+++.  ......++.++..+..
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            5544444432   345555555543  5666777788877775

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=86.96  E-value=31  Score=42.07  Aligned_cols=148  Identities=14%  Similarity=0.083  Sum_probs=93.3

Q ss_pred             chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507          461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQ  540 (684)
Q Consensus       461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  540 (684)
                      |++|.|..-|.+.+..+|..|...+|.+......+.. --.......++.-+.+. +..||.++.....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7899999999999999999999999999876654332 00112444555555666 889999999999988776655443


Q ss_pred             HHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          541 AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       541 ~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      ...   ..-.+.....+.+..++..++...+...     ...-.++.. .+..+.+.+.+....|+..|+..|..+.+.
T Consensus       337 ~~~---~~~~l~~~~~D~~~rir~~v~i~~~~v~-----~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRERDLDEDVRVRTQVVIVACDVM-----KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHhhcCChhhhheeeEEEEEeehh-----HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            222   2222222222223333332222211111     111222333 677777788888999999999999998883

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=86.95  E-value=6.4  Score=35.99  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=28.0

Q ss_pred             ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507          504 AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQ  540 (684)
Q Consensus       504 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  540 (684)
                      .++.|..+|..+.+..+|+++..+++.|.+-+|...+
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k   47 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK   47 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence            5677788887776789999999999999875544333

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=86.81  E-value=25  Score=39.73  Aligned_cols=195  Identities=17%  Similarity=0.205  Sum_probs=105.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC----CChHHHHHHHHHHHHhhC----
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS----PSDDVREQAVWALGNVAA----  363 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~~L~nLa~----  363 (684)
                      .+..+.+.+.+..-+.  .+|+.++..+...-.....     ..+..+..++.+    +.+.++..|+.++++++.    
T Consensus       358 a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~  430 (574)
T smart00638      358 ALKFIKQWIKNKKITP--LEAAQLLAVLPHTARYPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV  430 (574)
T ss_pred             HHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhhcCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence            5566667776654221  2333333333331111112     235666677765    456788899999998873    


Q ss_pred             CCCCCchhHhhcCCHHHHHHHhcc---CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc---CCcHHHHHH
Q 035507          364 DSSGCRDLVLSEGALIPLLAQLNE---HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH---SNDEQVLTD  437 (684)
Q Consensus       364 ~~~~~r~~i~~~g~l~~Ll~~L~~---~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~  437 (684)
                      +.+.+... .....++.+...|..   ..+..-+..++.+|+|+-..          ..++.+...+.   .....++..
T Consensus       431 ~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~  499 (574)
T smart00638      431 NTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLA  499 (574)
T ss_pred             CCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHH
Confidence            22221111 112245555555532   23444556677788877543          34555555555   234679999


Q ss_pred             HHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC
Q 035507          438 ACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN  515 (684)
Q Consensus       438 al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~  515 (684)
                      |+++|..++ ...+..        +-+.++.++.+  .++++|..|+..+..  +..+ .       ..+..+...+...
T Consensus       500 Av~Alr~~a-~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~-~-------~~l~~ia~~l~~E  560 (574)
T smart00638      500 AILALRNLA-KRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLME--TKPS-V-------ALLQRIAELLNKE  560 (574)
T ss_pred             HHHHHHHHH-HhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCC-H-------HHHHHHHHHHhhc
Confidence            999999887 433332        23456666544  456677777766633  2222 1       1345566666555


Q ss_pred             CChhHHHH
Q 035507          516 HKNSIKKE  523 (684)
Q Consensus       516 ~~~~v~~~  523 (684)
                      ++..|+..
T Consensus       561 ~~~QV~sf  568 (574)
T smart00638      561 PNLQVASF  568 (574)
T ss_pred             CcHHHHHH
Confidence            35555443

>PLN03210 Resistant to P

Probab=86.70  E-value=0.33  Score=59.60  Aligned_cols=98  Identities=13%  Similarity=0.075  Sum_probs=56.3

Q ss_pred             HHHHHHhhhCCCCCcEEEecCcccCCCcccccccccccccccc----ceee--c--ccccccchhhhh-hccccccCCcc
Q 035507           77 FVNELVKLQGSSQLKHLYISGSRLALNPEESERPEKLSYDIPS----NEII--L--EDDISIAKSLFI-EKKLTLSYLKS  147 (684)
Q Consensus        77 ~l~~l~~~~~~~~l~~l~~~~~~~~l~~~~~~~c~~le~ii~~----~~~~--~--~~~~~~~~~~~~-l~~l~l~~Lp~  147 (684)
                      +|+.|+ ...|..|..++-....+.|+.+.+..|.+++.+-..    ....  .  -+.+|..-.-+. |++|.|.++++
T Consensus       803 ~L~~L~-Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        803 KLEHLE-IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             CCCEEE-CCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence            344444 333334444433333456777888888777653221    0000  0  011222222234 78888888888


Q ss_pred             ccccccCccccccCCccceeeccCcccccc
Q 035507          148 LTSFCSGSCAIKFPSLEVLVVDDCHNMMIF  177 (684)
Q Consensus       148 L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~  177 (684)
                      |+++....  ..+++|+.+.+.+|++|+.+
T Consensus       882 L~~l~~~~--~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        882 LQRVSLNI--SKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             cCccCccc--ccccCCCeeecCCCcccccc
Confidence            88876643  56788888899999988744

syringae 6; Provisional

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=86.44  E-value=7.3  Score=43.45  Aligned_cols=148  Identities=15%  Similarity=0.168  Sum_probs=95.8

Q ss_pred             HhchHHHHHHhcCCCCcccHhHHHHHHHHH---HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507          459 EAGVCGRLVELLGHPSPSVLTPALWTVGNI---VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN  535 (684)
Q Consensus       459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl---~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  535 (684)
                      ...++|.|..++...++  ....+.++-++   ....+   ..-+...++|.|..-+++. +..++..+...+..++..-
T Consensus       347 ~~~~~p~l~pi~~~~~~--~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~i  420 (700)
T KOG2137|consen  347 GPKMLPALKPIYSASDP--KQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESI  420 (700)
T ss_pred             hhhhhHHHHHHhccCCc--ccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhc
Confidence            33567788887764221  22222333333   22221   1122346888998888888 9999999999999887632


Q ss_pred             hHHHHHHHHhCCHHHHHHHh-ccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHH
Q 035507          536 REQIQAVIDAGLIGPLVNLL-QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE  614 (684)
Q Consensus       536 ~~~~~~l~~~g~l~~Li~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~  614 (684)
                      +   -..+..-++|.+..+. ...+..++..++-|+..++..     .+...-...+.++....+..+|.++...+.+..
T Consensus       421 D---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~  492 (700)
T KOG2137|consen  421 D---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYE  492 (700)
T ss_pred             c---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            2   2234555788888874 345888999999999988832     222122224667777778889999999888888


Q ss_pred             HHHhcc
Q 035507          615 NILKVG  620 (684)
Q Consensus       615 ~il~~~  620 (684)
                      ++.-..
T Consensus       493 ~l~~~~  498 (700)
T KOG2137|consen  493 ALALII  498 (700)
T ss_pred             HHHhhc
Confidence            776554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=86.42  E-value=50  Score=35.27  Aligned_cols=233  Identities=18%  Similarity=0.181  Sum_probs=130.9

Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHhhCCCC---CCchhHhhcCCHHHHHHHhc------cCCchHHHHHHHHHHHHhccCC
Q 035507          338 IFVKLLASPSDDVREQAVWALGNVAADSS---GCRDLVLSEGALIPLLAQLN------EHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       338 ~Li~lL~~~~~~v~~~a~~~L~nLa~~~~---~~r~~i~~~g~l~~Ll~~L~------~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .+..++...+.+-+-.|+.....++....   ..++.+.+.-+.+.+-.++.      ..++.-.+..++..|..+|+..
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35556666666667677777777775442   13445555555555555553      2234445667888899999987


Q ss_pred             CCCChhhhhchHHHHHHHhcCC-cHH------HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHh-H
Q 035507          409 PRPLFDQVRPALPALAQLIHSN-DEQ------VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT-P  480 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~-d~~------v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~-~  480 (684)
                      .-.....+-.-+|.+...+... |++      +..++..+|..++ . .+...+.++..|.++.+.++-.-++...-. -
T Consensus        95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~-~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-T-AEAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-c-CCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            5555555567788888888632 333      7788889998888 4 456667789999999999886554433322 2


Q ss_pred             HHHHHHHHHcCCh---hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHH--HHHH----HHhCCHHHH
Q 035507          481 ALWTVGNIVMGDD---FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ--IQAV----IDAGLIGPL  551 (684)
Q Consensus       481 al~~L~nl~~~~~---~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l----~~~g~l~~L  551 (684)
                      |+.++--.+.+.+   +....+..  ++..+..-+... +...+-+.|..|+.+....+..  ...+    .-......+
T Consensus       173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~  249 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV  249 (698)
T ss_pred             HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence            3333322222211   11111111  233333333344 5567888999998765432210  0111    111123344


Q ss_pred             HHHhccC-CHhHHHHHHHHHHHhhc
Q 035507          552 VNLLQNA-EFDIKEEAAWAISNASS  575 (684)
Q Consensus       552 i~ll~~~-~~~v~~~a~~aL~nl~~  575 (684)
                      ..+|++. .+.-|..|.....|+..
T Consensus       250 ~~IL~~kv~p~qr~pAL~Laa~~~h  274 (698)
T KOG2611|consen  250 VAILQNKVAPSQRLPALILAANMMH  274 (698)
T ss_pred             HHHHhcccCchhcChHHHHHHHHHH
Confidence            5566655 45555556665555543

>KOG1988 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.85  E-value=28  Score=39.73  Aligned_cols=253  Identities=15%  Similarity=0.109  Sum_probs=153.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ....+=++++++....|-+++..+-++....+.+  .++.+ ..=.|......++ ..+|...+++...--.    +...
T Consensus        25 ~~~~ldkGlr~~~t~eqpeavvr~~RLFek~Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~   96 (970)
T KOG1988|consen   25 VLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNK   96 (970)
T ss_pred             HHHHHhhcccccccccchHHHHHHHHHHhhCCch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchh
Confidence            4556777888888888888888888877766533  33333 3335666667777 5788877777763222    2222


Q ss_pred             HH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          330 VI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       330 i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      +. ....+........+.|+.-|+.++..++.++.--|       +.+..+.++..-..+.+.--.+.++.+...++.-.
T Consensus        97 v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s  169 (970)
T KOG1988|consen   97 VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS  169 (970)
T ss_pred             hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh
Confidence            32 22344444455667899999999999999864433       34455666655444444444566666666665543


Q ss_pred             CCCChhhhhchHHHHHHHhcCCc--HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSND--EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTV  485 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L  485 (684)
                      .    ....++...+..++...+  +...-.++.+++.+. ..      +.....+......++.. +..+-...-+.++
T Consensus       170 k----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~-c~------at~A~ra~~l~m~lv~~tps~d~~v~fL~st  238 (970)
T KOG1988|consen  170 K----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMH-CH------ATGASRAFGLCMSLVSGTPSIDRVVAFLYST  238 (970)
T ss_pred             h----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhc-ch------hhhhHHHHHHHHHHhcCCCcccceeeehhhh
Confidence            1    122334445555555443  455667788888887 21      12223355666666643 4445555667777


Q ss_pred             HHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          486 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       486 ~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      .+++...-.     .-.+-++.+.+.+..+....++..+.|-+.+++.
T Consensus       239 T~Lasrs~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~  281 (970)
T KOG1988|consen  239 TNLASRSLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK  281 (970)
T ss_pred             HHHHHHHHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            777653321     1224566778888755466677788888887764

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.32  E-value=74  Score=36.28  Aligned_cols=321  Identities=13%  Similarity=0.113  Sum_probs=168.0

Q ss_pred             cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHH--HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507          250 ILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEV--IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN  326 (684)
Q Consensus       250 ~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~i--i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  326 (684)
                      ....+.++++.. |.-+++.++++++-+...-+=..+.+  +-..+...+.+++..-..-+-+...+..|+-+.....+.
T Consensus       527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~  606 (978)
T KOG1993|consen  527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH  606 (978)
T ss_pred             HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            456667777765 67788888888887765543111111  112233344445543222345555666666665522222


Q ss_pred             HHHHHhcCChHHHHHhc---CCCChHHHHHHHHHHHHhhC----CCCCCchhHhhcCCHHHHHHHhccCCch---HHHHH
Q 035507          327 TKVVIEHDAVPIFVKLL---ASPSDDVREQAVWALGNVAA----DSSGCRDLVLSEGALIPLLAQLNEHTEL---SMLRI  396 (684)
Q Consensus       327 ~~~i~~~g~i~~Li~lL---~~~~~~v~~~a~~~L~nLa~----~~~~~r~~i~~~g~l~~Ll~~L~~~~~~---~v~~~  396 (684)
                      ..-..  +-+-.++..|   ..+.+-+|.+.+.+|.|+..    .++.+.      ..+-+++.+-.+..++   -+.+.
T Consensus       607 I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~ED  678 (978)
T KOG1993|consen  607 IAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLED  678 (978)
T ss_pred             hhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhhh
Confidence            21111  1111222222   12556677788888888862    222221      1234555554322222   23333


Q ss_pred             HHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHH-HhhccCCChHHHHHHHHhchHHHHHHhcCCCCc
Q 035507          397 ATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWAL-FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP  475 (684)
Q Consensus       397 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L-~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~  475 (684)
                      +...-.....+. ..-....-+++|.+...+....+. ..-++.++ +|+. -.+.. .-.....|++..+..++.+-..
T Consensus       679 gmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~-L~t~l~Ii~sYil-Ld~~~-fl~~y~~~i~k~~~~~l~dvr~  754 (978)
T KOG1993|consen  679 GMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTEN-LPTVLMIISSYIL-LDNTV-FLNDYAFGIFKKLNDLLDDVRN  754 (978)
T ss_pred             HHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHh-hccHH-HHHHHHHHHHHHHHHHHHHhhH
Confidence            332222222222 122223356667777666644333 33333333 3333 22222 2223344788888888877666


Q ss_pred             ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh-ccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh-C-------
Q 035507          476 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-IHNHKNSIKKEVSWIISNIACGNREQIQAVIDA-G-------  546 (684)
Q Consensus       476 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-g-------  546 (684)
                      +-....+.++..+...++ ........++++.+..-+ .....+.+-..-..+++.+.-.+++....+.+. .       
T Consensus       755 egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~  833 (978)
T KOG1993|consen  755 EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA  833 (978)
T ss_pred             HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence            666677777777776665 444455668888777655 222256677777777777776666666555532 1       


Q ss_pred             -CHHHHHHHhcc-CCHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507          547 -LIGPLVNLLQN-AEFDIKEEAAWAISNASSRGTHDQIK  583 (684)
Q Consensus       547 -~l~~Li~ll~~-~~~~v~~~a~~aL~nl~~~~~~~~~~  583 (684)
                       ++...+.+... .+++-|+--+-|+..+...+++....
T Consensus       834 ~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila  872 (978)
T KOG1993|consen  834 MLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILA  872 (978)
T ss_pred             HHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHH
Confidence             22222233332 37888888888888888876655433

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=85.05  E-value=6.3  Score=36.24  Aligned_cols=114  Identities=16%  Similarity=0.174  Sum_probs=77.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcC--CHHHHHHhhcCCCCHHHHHHHHHHHHHHhc---CCc
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESG--VVPRFVEFLMREDYPQLQFQAAWALTNIAS---GTS  324 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g--~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~---~~~  324 (684)
                      -+..+.+.++|+++..+..++..+.......+  .+.+.+.|  -+..++..|+.++.+.+...|+.+|..|..   +.+
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            45677888889999999999888877766542  34443433  577888899887767888888888887765   456


Q ss_pred             hhHHHHHhc---CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507          325 ENTKVVIEH---DAVPIFVKLLASPSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       325 ~~~~~i~~~---g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      +..+.+.-.   ++++.++.+++.  ....+.++.+|..+....|.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            655555433   234444444443  56777888888888754443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=84.75  E-value=6.1  Score=37.07  Aligned_cols=82  Identities=12%  Similarity=0.117  Sum_probs=61.1

Q ss_pred             CChHHHHHHHHhchHHHHHHhcCC---------CCcccHhHHHHHHHHHHcCChhhHHHHH-hcCChHHHHHHhccCCCh
Q 035507          449 RNNDKIQAVIEAGVCGRLVELLGH---------PSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKN  518 (684)
Q Consensus       449 ~~~~~~~~~~~~g~l~~L~~lL~~---------~~~~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~L~~lL~~~~~~  518 (684)
                      .+....+.+++.|++..|+.+|..         .+......+++|+..+..... ....++ ..+.+..|...|.++ +.
T Consensus        95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~-~~  172 (187)
T PF06371_consen   95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSP-NI  172 (187)
T ss_dssp             S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TT-SH
T ss_pred             CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCC-CH
Confidence            455778888899999999988743         234567788999988876554 555555 468899999999988 99


Q ss_pred             hHHHHHHHHHHHHh
Q 035507          519 SIKKEVSWIISNIA  532 (684)
Q Consensus       519 ~v~~~a~~~L~nl~  532 (684)
                      .+|..|+..|+.+|
T Consensus       173 ~~r~~~leiL~~lc  186 (187)
T PF06371_consen  173 KTRKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998875

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.57  E-value=80  Score=36.03  Aligned_cols=321  Identities=16%  Similarity=0.101  Sum_probs=163.4

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCC-ChHHHHHHHHHHHHhhCCCC
Q 035507          288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP-SDDVREQAVWALGNVAADSS  366 (684)
Q Consensus       288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~~L~nLa~~~~  366 (684)
                      .....+|-+-  ..+++..-+|...+|.++...+  .++.... ..-+-..++.+++.. |..++-.++.++.-...|-.
T Consensus       485 l~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvs--vq~~~e~-k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n  559 (978)
T KOG1993|consen  485 LQEALLPELA--NDHGNSRIIRRRVAWILGQWVS--VQQKLEL-KPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN  559 (978)
T ss_pred             HHHhhCHHhh--hcccchhHHHHHHHHHHhhhhh--eechHhH-HHHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc
Confidence            3344455444  2334445688999999999887  1222111 112345678888875 66677788888877765542


Q ss_pred             CCchhHhh--cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHH
Q 035507          367 GCRDLVLS--EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWAL  442 (684)
Q Consensus       367 ~~r~~i~~--~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L  442 (684)
                      -..+.+..  .+....+..++..-...+.+...+.+++.+..............+++.+-.+=.  .+.+-.+-+.+.++
T Consensus       560 F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L  639 (978)
T KOG1993|consen  560 FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATL  639 (978)
T ss_pred             CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Confidence            22222211  122334445554444556666677777766554311111111122222111111  23455566667777


Q ss_pred             HhhccCCChHHHHHHHHhchHHHHHHhcCC-CCc---ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh
Q 035507          443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGH-PSP---SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN  518 (684)
Q Consensus       443 ~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~---~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~  518 (684)
                      .++. .+-..... .. ..++-.++++-.+ .+|   -..+.++..-+......+.....+.  +.+|.+...+... ..
T Consensus       640 ~~lV-~alg~qS~-~~-~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te  713 (978)
T KOG1993|consen  640 RNLV-NALGAQSF-EF-YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-TE  713 (978)
T ss_pred             HHHH-HHhccCCc-cc-hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-hh
Confidence            7776 21111100 00 0122223333222 222   2233333332222222232233333  3778888888655 33


Q ss_pred             hHHHHHHHHHHHH-hcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 035507          519 SIKKEVSWIISNI-ACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDL  597 (684)
Q Consensus       519 ~v~~~a~~~L~nl-~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~l  597 (684)
                      . -..+..++..- .-.++...+ -...|+...+.+++.+-..+-....+..+..+..  ..+....+...++++.+..-
T Consensus       714 ~-L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~--t~~il~~~~~~~~L~~lf~~  789 (978)
T KOG1993|consen  714 N-LPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIK--TNPILGSLLFSPLLSRLFLS  789 (978)
T ss_pred             h-HHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hhHHHHhhhcchhhHHHHHH
Confidence            3 33444444432 223333222 2335688888888877666666667777777766  23344445566777776664


Q ss_pred             c--cCCChHHHHHHHHHHHHHHhccccc
Q 035507          598 L--QCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       598 L--~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      .  +.+.|.+....+.++.++.-.++..
T Consensus       790 I~~~~~yP~~~~~yl~vvaRi~l~n~~~  817 (978)
T KOG1993|consen  790 IAENDKYPYVMGEYLLVVARISLRNPSL  817 (978)
T ss_pred             HHhCCCCchhHHHHHHHHHHHHhcChHH
Confidence            4  4566777888888888877665543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.52  E-value=7.7  Score=38.91  Aligned_cols=146  Identities=21%  Similarity=0.195  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcC--ChHHHHHhcC----CCChHHHHHHHHHHHHhhCCCCCCchhHhhcC--CH
Q 035507          307 QLQFQAAWALTNIASGTSENTKVVIEHD--AVPIFVKLLA----SPSDDVREQAVWALGNVAADSSGCRDLVLSEG--AL  378 (684)
Q Consensus       307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g--~i~~Li~lL~----~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g--~l  378 (684)
                      +-+.-++..++-++. ++.....+...+  ....+..++.    +..+..+-.++++++|+...... +..+....  .+
T Consensus        78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchH
Confidence            446667777766665 444444444332  2333333332    25677888899999999887654 55555432  34


Q ss_pred             HHHHHHhccCC---chHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCCh
Q 035507          379 IPLLAQLNEHT---ELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNN  451 (684)
Q Consensus       379 ~~Ll~~L~~~~---~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~  451 (684)
                      ...+..+....   +..++..++..+.|++-..  ...........+..+.+.+.  ..|++....++-+++++. ..+.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~-~~~~  234 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL-SSSD  234 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH-CCSH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh-ccCh
Confidence            44444443333   6788888888888887654  11122233445666666433  268999999999999999 6555


Q ss_pred             HHHH
Q 035507          452 DKIQ  455 (684)
Q Consensus       452 ~~~~  455 (684)
                      ...+
T Consensus       235 ~~~~  238 (268)
T PF08324_consen  235 SAKQ  238 (268)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            4444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=84.39  E-value=14  Score=42.22  Aligned_cols=169  Identities=14%  Similarity=0.079  Sum_probs=92.7

Q ss_pred             ChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhcc---CCchHHHHHHHHHHHHhccCC-C
Q 035507          335 AVPIFVKLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNE---HTELSMLRIATTTLSNLCRGK-P  409 (684)
Q Consensus       335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~---~~~~~v~~~a~~~L~nL~~~~-~  409 (684)
                      ++..+.+++.+....-. .|...|..+.... ....+      .+..+..++..   ..+..+...|+-+++.+.... .
T Consensus       396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            46666677666433222 2444455544332 11122      24444445432   234456666666665554332 1


Q ss_pred             ---------CCChhhhhchHHHHHHHhc----CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC---
Q 035507          410 ---------RPLFDQVRPALPALAQLIH----SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP---  473 (684)
Q Consensus       410 ---------~~~~~~~~~~l~~L~~lL~----~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~---  473 (684)
                               ..........++.+...+.    ..|.+.+..++.+|+|+. .           ...++.+..++...   
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g-~-----------~~~i~~l~~~i~~~~~~  536 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG-H-----------PESIPVLLPYIEGKEEV  536 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------------GGGHHHHHTTSTTSS-S
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-C-----------chhhHHHHhHhhhcccc
Confidence                     1122233455555555544    567788899999999988 2           24678888888766   


Q ss_pred             CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHH
Q 035507          474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISN  530 (684)
Q Consensus       474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~n  530 (684)
                      ...+|..|++++..++...+...        .+.++.++.+. .+.++|..|..+|..
T Consensus       537 ~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  537 PHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             -HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            56788999999998877666433        35666666543 367888888766654

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=84.13  E-value=42  Score=37.31  Aligned_cols=286  Identities=16%  Similarity=0.192  Sum_probs=143.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+..+=+.+.+++..++--|+..+.-..++.....+     .++..|...+.+++ ..++..|+-.|+-.-+++  +++.
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~d-----palALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e~  487 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECD-----PALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QREE  487 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccccC-----HHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chHH
Confidence            455566666666666665555544433332221111     12345566666666 577877777776554432  3333


Q ss_pred             HHhcCChHHHHHhcCCC--ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          330 VIEHDAVPIFVKLLASP--SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~--~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      +..     .|..++.+.  ..++...|..+|+.+.-.+.+  ..+ ..-.++.++..-.........+...-.|..+-.+
T Consensus       488 V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llflg  559 (878)
T KOG2005|consen  488 VLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFLG  559 (878)
T ss_pred             HHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhc
Confidence            321     445556553  355777777788877644322  111 1112333333221112223334333344444333


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHH---HhhccCCChHHHHHHHHhchHHHHHHhcCCCC---cccHhHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWAL---FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS---PSVLTPA  481 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L---~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~~~a  481 (684)
                      ..        ..+...+.-+..-...+...+-..+   .|.. .++.-.++.       ..+..+-....   ..-+..|
T Consensus       560 kq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaG-TGnvl~Iq~-------q~ll~~cgE~~~~~e~~~~~a  623 (878)
T KOG2005|consen  560 KQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAG-TGNVLKIQS-------QLLLSFCGEHDADLESEQELA  623 (878)
T ss_pred             cc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccc-cCceEEech-------hhhhhhcCCCccchhhhccch
Confidence            21        1111222222111111111111111   1111 111111110       12222222211   1223356


Q ss_pred             HHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507          482 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD  561 (684)
Q Consensus       482 l~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~  561 (684)
                      +--++-++.+.+-..+..     +..+-.+|..+ ++.+|+..=-+++-++..+|..       +++..|-+...+++.+
T Consensus       624 vLgiAliAMgeeig~eM~-----lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~e  690 (878)
T KOG2005|consen  624 VLGIALIAMGEEIGSEMV-----LRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLE  690 (878)
T ss_pred             hhhhhhhhhhhhhhhHHH-----HHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchH
Confidence            666666777666555443     45677788888 8999999989999888877542       4678888888888999


Q ss_pred             HHHHHHHHHHHhhcCCCHH
Q 035507          562 IKEEAAWAISNASSRGTHD  580 (684)
Q Consensus       562 v~~~a~~aL~nl~~~~~~~  580 (684)
                      +.-.|..+++-+-.+.+..
T Consensus       691 va~naIfamGLiGAGTnNA  709 (878)
T KOG2005|consen  691 VAMNAIFAMGLIGAGTNNA  709 (878)
T ss_pred             HHHHHHHHhccccCCcchH
Confidence            9999998888776554433

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=83.38  E-value=2.4  Score=40.77  Aligned_cols=84  Identities=15%  Similarity=0.202  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHc-------CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH-hcC
Q 035507          263 NNLQLEATTQFQKLLSIESMPIEEVIES-------GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI-EHD  334 (684)
Q Consensus       263 ~~~~~~a~~~L~~l~s~~~~~~~~ii~~-------g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~-~~g  334 (684)
                      ..-|..|+.+|.|+.-.+ .+.+.++..       .++..|++++....++..|+-|+-.|.+++.+++.....+. +.+
T Consensus       138 lSPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CCHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            456888999999965433 344444333       35667778887776689999999999999998777765554 678


Q ss_pred             ChHHHHHhcCCCC
Q 035507          335 AVPIFVKLLASPS  347 (684)
Q Consensus       335 ~i~~Li~lL~~~~  347 (684)
                      .|..|+.++.+..
T Consensus       217 ~i~~Li~FiE~a~  229 (257)
T PF12031_consen  217 CISHLIAFIEDAE  229 (257)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999987643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=82.94  E-value=8.4  Score=36.53  Aligned_cols=107  Identities=10%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHhc-CCchhHHHHHhcCC
Q 035507          261 DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR----EDYPQLQFQAAWALTNIAS-GTSENTKVVIEHDA  335 (684)
Q Consensus       261 ~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~----~~~~~v~~~A~~~L~~l~~-~~~~~~~~i~~~g~  335 (684)
                      +...-+...+..+-..+..+++....+.++.+--.+-.+|..    ...+.+|..++.+++.+.. ++......+....+
T Consensus       111 ~~~snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTei  190 (315)
T COG5209         111 ERESNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEI  190 (315)
T ss_pred             chhhhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhH
Confidence            344445544444444444444455555666543333444432    2235788899999999998 44555666778899


Q ss_pred             hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507          336 VPIFVKLLASPSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      +|..++++..++..-+.-|+.+++.+.+++..
T Consensus       191 vPLcLrIme~gSElSktvaifI~qkil~dDvG  222 (315)
T COG5209         191 VPLCLRIMELGSELSKTVAIFIFQKILGDDVG  222 (315)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccchh
Confidence            99999999998888888888899888877654

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=82.82  E-value=51  Score=32.45  Aligned_cols=89  Identities=18%  Similarity=0.235  Sum_probs=53.8

Q ss_pred             cCChHHHHHhcCCCCh--------HHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC-chHHHHHHHHHHHH
Q 035507          333 HDAVPIFVKLLASPSD--------DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT-ELSMLRIATTTLSN  403 (684)
Q Consensus       333 ~g~i~~Li~lL~~~~~--------~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~-~~~v~~~a~~~L~n  403 (684)
                      ..+.+.++.+++.++.        .+.+....++..++.            |-+.+|..++.+.. +.-++..|+.+|..
T Consensus        72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~  139 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF  139 (249)
T ss_pred             hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            4678999999976543        233334444444433            34667777774433 56678889999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHHhcCCcHH
Q 035507          404 LCRGKPRPLFDQVRPALPALAQLIHSNDEQ  433 (684)
Q Consensus       404 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~  433 (684)
                      +....+......+.-.-..+-..+..++..
T Consensus       140 l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~  169 (249)
T PF06685_consen  140 LVHEGPISREEVIQYFRELLNYFLERNPSF  169 (249)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhccCchH
Confidence            998876555544444444444445444343

The function of this family is unknown.

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=82.25  E-value=22  Score=40.66  Aligned_cols=157  Identities=17%  Similarity=0.188  Sum_probs=108.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+..++..|.|.|..+...+-..+...+....++.       ++..|+.+--+...    ..|+.+|..+-.  |..+  
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K--   69 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPW-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK--   69 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHH-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH--
Confidence            57889999999999998888888888777654331       35566666433331    234556654432  2111  


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                          ..+..|=..+..  +.-|-.++..|+.+....|..-..|.+...+..|+.+|..+.+..+...|+.+|.-|.-.-|
T Consensus        70 ----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip  143 (668)
T PF04388_consen   70 ----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP  143 (668)
T ss_pred             ----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence                223444445544  45677899999999988877777888889999999999888899998889888888776555


Q ss_pred             CCChhhhhchHHHHHHHh
Q 035507          410 RPLFDQVRPALPALAQLI  427 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL  427 (684)
                      .........++.+...++
T Consensus       144 ~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  144 SSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             chhhHHHHHHHHHHHHHH
Confidence            444445555666655665

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.79  E-value=1.6e+02  Score=37.37  Aligned_cols=232  Identities=17%  Similarity=0.091  Sum_probs=122.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCch
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      ....++..|..++ |..+..++.+++.++..-++.. .  -++....+++-+.+ .++-.|..-..++|.+-++....-.
T Consensus       877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~~-f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s  952 (2067)
T KOG1822|consen  877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGSAP-F--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS  952 (2067)
T ss_pred             HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccccc-h--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence            3444555555666 7888888888888886221111 0  11234455555555 5566666666777777544322111


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCc---HHHHH-----------
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND---EQVLT-----------  436 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~-----------  436 (684)
                      .-.....+..++.+-.++.++.++..++.++..+...........+...+..+..++.+..   .++..           
T Consensus       953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            1111223556666665666779999999999888877633334445555555556554321   11111           


Q ss_pred             --HHHHHHHhhccCCChH-HHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507          437 --DACWALFGLSGDRNND-KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI  513 (684)
Q Consensus       437 --~al~~L~~L~~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~  513 (684)
                        ....+++.=. ..+.. ..-.......+-...-++.++++.++..|..++-++....+.+...   .-.++.+..++.
T Consensus      1033 ~~alittlgpeL-~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPEL-GPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHHhccccc-CCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhc
Confidence              1222222222 11111 1111222233444455567778889999999999887655532211   124556666665


Q ss_pred             cCCChhHHHHHHHHHHHHh
Q 035507          514 HNHKNSIKKEVSWIISNIA  532 (684)
Q Consensus       514 ~~~~~~v~~~a~~~L~nl~  532 (684)
                      ++ ..-.|+.+.-++..++
T Consensus      1109 s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             ch-hhhhhhhHHhhhhHHh
Confidence            55 4444444444444443

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.67  E-value=1.1e+02  Score=35.28  Aligned_cols=308  Identities=14%  Similarity=0.106  Sum_probs=146.9

Q ss_pred             HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hcCC--CChHHHHHHHHHHHHh
Q 035507          285 EEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK-LLAS--PSDDVREQAVWALGNV  361 (684)
Q Consensus       285 ~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~-lL~~--~~~~v~~~a~~~L~nL  361 (684)
                      +++.+...+..+-+-|...+...-|..|+..+..++...+.....++. +.+..+++ ...+  .+..-++.|+.....+
T Consensus       355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nPS~nWk~kd~aiyL~tal  433 (960)
T KOG1992|consen  355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNPSGNWKKKDRAIYLVTAL  433 (960)
T ss_pred             HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCCCccccccchhhhhhHHH
Confidence            455566666666677766553455677888888888844333333332 22444443 3333  3455566777777777


Q ss_pred             hCCCCCCchhHhhcCCHH--------HHHHHhcc---CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCC
Q 035507          362 AADSSGCRDLVLSEGALI--------PLLAQLNE---HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN  430 (684)
Q Consensus       362 a~~~~~~r~~i~~~g~l~--------~Ll~~L~~---~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~  430 (684)
                      +......+.-+...+-+-        .++..|.+   ...+-++..+   +-.+-.............++|.+..++..+
T Consensus       434 aik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~a---IKy~~~FR~ql~~~~lm~~~p~li~~L~a~  510 (960)
T KOG1992|consen  434 AIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADA---IKYIYTFRNQLGKEHLMALLPRLIRFLEAE  510 (960)
T ss_pred             HhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcc---cceeeeecccCChHHHHHHHHHHHHhccCc
Confidence            744322221111111111        12222212   1112222222   222222223344455678899999999999


Q ss_pred             cHHHHHHHHHHHHhhccCCChHHHHHHHHh-chH----HH---HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc
Q 035507          431 DEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVC----GR---LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH  502 (684)
Q Consensus       431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l----~~---L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~  502 (684)
                      ..-+-..|..++-.+. ...+.....+... .+.    ..   |+..++.+...--...+.++..+..-.++.+..... 
T Consensus       511 s~vvhsYAA~aiEkil-~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~-  588 (960)
T KOG1992|consen  511 SRVVHSYAAIAIEKLL-TVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAP-  588 (960)
T ss_pred             chHHHHHHHHHHHhcc-ccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhh-
Confidence            9999999988887665 2222211111111 111    22   222233332222233444444444333322211110 


Q ss_pred             CChHHHHHHh----ccCCChhHH---HHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507          503 GAVPCLLALL----IHNHKNSIK---KEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNAS  574 (684)
Q Consensus       503 g~l~~L~~lL----~~~~~~~v~---~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~  574 (684)
                      ..+..|.+++    .++.++..-   -++..++-+.+. .++..+.. .+..++|.+..++..+-.+.--.+...++-+.
T Consensus       589 ~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~-~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lv  667 (960)
T KOG1992|consen  589 ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSS-LEEALFPVFQTILSEDIQEFIPYVFQLLAVLV  667 (960)
T ss_pred             HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1233333333    333234322   233333444433 44444443 44458888888887765555555555555554


Q ss_pred             cCC---CHHHHH---------HHH-HCCChHHHHhhcc
Q 035507          575 SRG---THDQIK---------YLV-TEGCIKPLCDLLQ  599 (684)
Q Consensus       575 ~~~---~~~~~~---------~l~-~~g~l~~L~~lL~  599 (684)
                      ...   -++...         .+. ..|-+++++.++.
T Consensus       668 e~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~  705 (960)
T KOG1992|consen  668 EHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ  705 (960)
T ss_pred             HhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence            322   222221         222 3677888887775

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.41  E-value=58  Score=39.47  Aligned_cols=135  Identities=16%  Similarity=0.148  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHH-hc-CChHHHHHh--cCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHH
Q 035507          307 QLQFQAAWALTNIASGTSENTKVVI-EH-DAVPIFVKL--LASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLL  382 (684)
Q Consensus       307 ~v~~~A~~~L~~l~~~~~~~~~~i~-~~-g~i~~Li~l--L~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll  382 (684)
                      .++..++.++.+.++.+......+. +. |.+-....+  ..++..+++...+.++.++-...-+   .+. .| .+.++
T Consensus       811 s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~  885 (1610)
T KOG1848|consen  811 SILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVF  885 (1610)
T ss_pred             HHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHH
Confidence            3444444455555543333333222 11 323223322  2346677888888888888754322   111 12 33444


Q ss_pred             HHhc---cC---CchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhc
Q 035507          383 AQLN---EH---TELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLS  446 (684)
Q Consensus       383 ~~L~---~~---~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~  446 (684)
                      +.+.   ..   ....+.+.+..+|.-++.+. +.-+.....+++..+..... ..|..+--.|+..++.++
T Consensus       886 eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvs  957 (1610)
T KOG1848|consen  886 EMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVS  957 (1610)
T ss_pred             HHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence            4432   11   24567777888888888777 77777778888888877765 456777777777666666

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=81.23  E-value=6.4  Score=35.21  Aligned_cols=70  Identities=19%  Similarity=0.307  Sum_probs=58.1

Q ss_pred             ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHH
Q 035507          590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH-DNNEIHEKSVKIL  668 (684)
Q Consensus       590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~-~~~~i~~~a~~ii  668 (684)
                      ++..|..-+.+.++.++..++..|..+++.+...            |...+-..++++.|..+... .+++|.+++..+|
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            4667777788899999999999999999887653            56667777788888888655 7899999999999


Q ss_pred             HHh
Q 035507          669 ETY  671 (684)
Q Consensus       669 ~~~  671 (684)
                      +.+
T Consensus       106 ~~W  108 (144)
T cd03568         106 KQW  108 (144)
T ss_pred             HHH
Confidence            987

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=80.77  E-value=81  Score=33.36  Aligned_cols=223  Identities=12%  Similarity=0.138  Sum_probs=127.4

Q ss_pred             chHHHHHHHHHHHHhccCC---CCCChhhhhchHHHHHHHhcC--CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHH
Q 035507          390 ELSMLRIATTTLSNLCRGK---PRPLFDQVRPALPALAQLIHS--NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCG  464 (684)
Q Consensus       390 ~~~v~~~a~~~L~nL~~~~---~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~  464 (684)
                      +..+...|+.+++.+....   ..-......-++...+..+.+  .+..+....+|+|+.=-  -+..    ++....+.
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~--f~~~----~~~~~~~~  132 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK--FSPK----IMTSDRVE  132 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--CCCc----ccchhhHH
Confidence            6678888888888887764   111122222344445555543  34677888888887533  1111    22223333


Q ss_pred             HHHHhc----C-CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CChH
Q 035507          465 RLVELL----G-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GNRE  537 (684)
Q Consensus       465 ~L~~lL----~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~  537 (684)
                      .++..+    + -++..+...++.++.++....+.....-. .-.+|.++..+-+. ...+|..|...+..+..  +...
T Consensus       133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~  210 (372)
T PF12231_consen  133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNK  210 (372)
T ss_pred             HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhH
Confidence            333333    2 35667888999999999877764432211 12677777777676 67777776555554432  2211


Q ss_pred             HH----HHHHHh----C-----CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC-HHHHHHHHHCCChHHHHhhccCCCh
Q 035507          538 QI----QAVIDA----G-----LIGPLVNLLQNAEFDIKEEAAWAISNASSRGT-HDQIKYLVTEGCIKPLCDLLQCADP  603 (684)
Q Consensus       538 ~~----~~l~~~----g-----~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~g~l~~L~~lL~~~~~  603 (684)
                      ..    ....+.    +     +.+.|..++.+++......-+|...-...+.. .+....+  ...+.....+++++|+
T Consensus       211 ~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~  288 (372)
T PF12231_consen  211 ELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDP  288 (372)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCH
Confidence            11    111221    2     23446666666444444455566665555433 2222221  2256667778889999


Q ss_pred             HHHHHHHHHHHHHHhcccc
Q 035507          604 KIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       604 ~v~~~al~~L~~il~~~~~  622 (684)
                      .++..|..+-..+......
T Consensus       289 ~~k~~A~~aW~~liy~~~~  307 (372)
T PF12231_consen  289 QVKIQAFKAWRRLIYASNP  307 (372)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            9999999999988885433

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=80.21  E-value=8.5  Score=36.49  Aligned_cols=131  Identities=14%  Similarity=0.116  Sum_probs=90.9

Q ss_pred             HHHHHhcCChHHHHHHHHhCCHHHHHHHhcc-----CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507          527 IISNIACGNREQIQAVIDAGLIGPLVNLLQN-----AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA  601 (684)
Q Consensus       527 ~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~  601 (684)
                      .+..+.+..|+....++++.+--.+...+..     +-..+|-.+..+++.+...+++...+.+....+++.....++..
T Consensus       122 ~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g  201 (315)
T COG5209         122 NLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG  201 (315)
T ss_pred             HHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh
Confidence            3344444556777777777664444444432     24557888999999999999999999999999999999999988


Q ss_pred             ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHH-----HHhhcCCCHHHHHHHHHH
Q 035507          602 DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKI-----ENLQSHDNNEIHEKSVKI  667 (684)
Q Consensus       602 ~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L-----~~L~~~~~~~i~~~a~~i  667 (684)
                      +.--...+..++..|+....          +.+..|+.+++..++..+     ..+-......+.+.|..+
T Consensus       202 SElSktvaifI~qkil~dDv----------GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRc  262 (315)
T COG5209         202 SELSKTVAIFIFQKILGDDV----------GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRC  262 (315)
T ss_pred             hHHHHHHHHHHHHHHhccch----------hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            88778888888888886543          345578888877766532     333344455554444443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=80.03  E-value=32  Score=32.36  Aligned_cols=77  Identities=19%  Similarity=0.141  Sum_probs=59.6

Q ss_pred             hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507          416 VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ  495 (684)
Q Consensus       416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  495 (684)
                      ++..++.++++..+++..++..|+..+.-+...+-      +--...+|.++.+..++++.++..|...+..+....+..
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL------vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGL------VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC------CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            45667888888889999999999999987772211      111136899999999999999999999999998776654


Q ss_pred             HHH
Q 035507          496 TQC  498 (684)
Q Consensus       496 ~~~  498 (684)
                      ...
T Consensus        80 v~~   82 (187)
T PF12830_consen   80 VES   82 (187)
T ss_pred             HHH
Confidence            443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	684
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-10
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-121
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-119
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-118
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-118
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-118
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-118
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-118
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-115
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-115
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-97
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-97
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-97
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-97
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		2e-97
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		2e-97
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		2e-97
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		2e-97
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		2e-97
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		2e-97
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		2e-97
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		2e-97
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		2e-97
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		2e-97
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		2e-96
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		5e-96
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-36
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		4e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		3e-28
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		2e-26
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-27
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-23
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-19
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-18
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		2e-07
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		2e-07
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		2e-07
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		2e-07
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		2e-07
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		2e-07
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		2e-07
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		2e-07
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		2e-07
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		2e-07
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		2e-07
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		2e-07
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		2e-07
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		9e-07
3bct_A	470	The Armadillo Repeat Region From Murine Beta-Cateni		1e-06

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/478 (74%), Positives = 404/478 (84%), Gaps = 6/478 (1%)
Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
           D E    + + N    + + + ES +KKRREGLQ+Q+ +P++ A  ++   KLE LP M+
Sbjct: 23  DAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVD--KKLESLPAMI 80
Query: 256 AGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAW 314
            GV+SDDNNLQLEATTQF+KLLSIE S PIEEVI+SGVVPRFV+FL RED+PQLQF+AAW
Sbjct: 81  GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAW 140
Query: 315 ALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
           ALTNIASGTSENTKVVI+H AVPIFVKLL S SDDVREQAVWALGNVA DS  CRDLVL+
Sbjct: 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA 200
Query: 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
            GAL+PLLAQLNEHT+LSMLR AT TLSN CRGKP+P F+Q RPALPALA+LIHSNDE+V
Sbjct: 201 NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV 260
Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           LTDACWAL  LS D  NDKIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV GDD 
Sbjct: 261 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319
Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
           QTQCII+H A+PCLL+LL  N K SIKKE  W ISNI  GN++QIQAVI+AG+IGPLVNL
Sbjct: 320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNL 379
Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           LQ AEFDIK+EAAWAISNA+S G+HDQIKYLV+EGCIKPLCDLL C D +IVTVCLEGLE
Sbjct: 380 LQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLE 439
Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           NILKVGE +K   +  GD+N F+Q+++EAEGLEKIENLQSHDNNEI+EK+VKILE YW
Sbjct: 440 NILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/423 (79%), Positives = 372/423 (87%), Gaps = 4/423 (0%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
           LP M+ GV+SDDNNLQLEATTQF+KLLSIE S PIEEVI+SGVVPRFV+FL RED+PQLQ
Sbjct: 38  LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
           F+AAWALTNIASGTSENTKVVI+H AVPIFVKLL S SDDVREQAVWALGNVA DS  CR
Sbjct: 98  FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 157
Query: 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS 429
           DLVL+ GAL+PLLAQLNEHT+LSMLR AT TLSN CRGKP+P F+Q RPALPALA+LIHS
Sbjct: 158 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 217
Query: 430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489
           NDE+VLTDACWAL  LS D  NDKIQAVIEAGVC RLVELL HPSPSVL PAL TVGNIV
Sbjct: 218 NDEEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 490 MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIG 549
            GDD QTQCII+H A+PCLL+LL  N K SIKKE  W ISNI  GN++QIQAVI+AG+IG
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 550 PLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC 609
           PLVNLLQ AEFDIK+EAAWAISNA+S G+HDQIKYLV+EGCIKPLCDLL C D +IVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 610 LEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILE 669
           LEGLENILKVGE +K   +  GD+N F+Q+++EAEGLEKIENLQSHDNNEI+EK+VKILE
Sbjct: 397 LEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 454
Query: 670 TYW 672
            YW
Sbjct: 455 AYW 457

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 45/248 (18%)
Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS-PSV 477
           +LPA+   ++S+D  +  +A      L     +  I+ VI++GV  R V+ L     P +
Sbjct: 37  SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE 537
              A W + NI  G    T+ +I+HGAVP  + LL  +  + ++++  W + N+A  + +
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPK 155
Query: 538 QIQAVIDAGLIGPL---------VNLLQNAEF---------------------------- 560
               V+  G + PL         +++L+NA +                            
Sbjct: 156 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI 215
Query: 561 -----DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN 615
                ++  +A WA+S  S  GT+D+I+ ++  G    L +LL    P ++   L  + N
Sbjct: 216 HSNDEEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 274
Query: 616 ILKVGEAE 623
           I+   +A+
Sbjct: 275 IVTGDDAQ 282

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/477 (52%), Positives = 329/477 (68%), Gaps = 21/477 (4%)
Query: 211 QQVNL---KRESFIKKRR------EGLQSQSYLPSALAPSINLHTKLEI-LPMMVAGVWS 260
           QQV L   KR+  + KRR      +G  S     S+++     +++L+  LP M   + S
Sbjct: 39  QQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNS 98
Query: 261 DDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-LQFQAAWALTN 318
           DD   QL AT +F+++LS E  P I+ VI++GVVPR VEF MRE+ P+ LQ +AAWALTN
Sbjct: 99  DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALTN 157
Query: 319 IASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGAL 378
           IASGTS  TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  RD VL   A+
Sbjct: 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 217
Query: 379 IPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLIHSNDEQVLTD 437
            P+L   N + + S++R AT TLSNLCRG KP+P +  V  ALP LA+LI+S D + L D
Sbjct: 218 EPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD 276
Query: 438 ACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 497
           ACWA+  LS D   + IQAVI+  +  RLVELL H S  V TPAL  VGNIV G+D QTQ
Sbjct: 277 ACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335
Query: 498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN 557
            +IN G +P  L LL+ + K +IKKE  W ISNI  GN EQIQAVIDA LI PLV LL+ 
Sbjct: 336 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 394
Query: 558 AEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN 615
           AE+  K+EA WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I+ V L+ LEN
Sbjct: 395 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454
Query: 616 ILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           ILK+GEA+K       +IN+ A  +E+A G+EKI N Q ++N++I+EK+ KI+ETY+
Sbjct: 455 ILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/427 (55%), Positives = 305/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
           LP M   + SDD   QL AT +F+++LS E  P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
           Q +AAWALTNIASGTS  TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
           RD VL   A+ P+L   N +   S++R AT TLSNLCRG KP+P +  V  ALP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           +S D + L DACWA+  LS D   + IQAVI+  +  RLVELL H S  V TPAL  VGN
Sbjct: 179 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 237
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G+D QTQ +IN G +P  L LL+ + K +IKKE  W ISNI  GN EQIQAVIDA L
Sbjct: 238 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
           I PLV LL+ AE+  K+EA WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
           + V L+ LENILK+GEA+K       +IN+ A  +E+A G+EKI N Q ++N++I+EK+ 
Sbjct: 357 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 666 KILETYW 672
           KI+ETY+
Sbjct: 415 KIIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/427 (55%), Positives = 305/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
           LP M   + SDD   QL AT +F+++LS E  P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
           Q +AAWALTNIASGTS  TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
           RD VL   A+ P+L   N +   S++R AT TLSNLCRG KP+P +  V  ALP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           +S D + L DACWA+  LS D   + IQAVI+  +  RLVELL H S  V TPAL  VGN
Sbjct: 179 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 237
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G+D QTQ +IN G +P  L LL+ + K +IKKE  W ISNI  GN EQIQAVIDA L
Sbjct: 238 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 296
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
           I PLV LL+ AE+  K+EA WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 297 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
           + V L+ LENI+K+GEA+K       +IN+ A  +E+A G+EKI N Q ++N++I+EK+ 
Sbjct: 357 IEVTLDALENIIKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 666 KILETYW 672
           KI+ETY+
Sbjct: 415 KIIETYF 421

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/427 (55%), Positives = 304/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
           LP M   + SDD   QL AT +F+++LS E  P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
           Q +AAWALTNIASGTS  TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
           RD VL   A+ P+L   N +   S++R AT TLSNLCRG KP+P +  V  ALP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           +S D + L DACWA+  LS D   + IQAVI+  +  RLVELL H S  V TPAL  VGN
Sbjct: 180 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 238
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G+D QTQ +IN G +P  L LL+ + K +IKKE  W ISNI  GN EQIQAVIDA L
Sbjct: 239 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
           I PLV LL+ AE   K+EA WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
           + V L+ LENILK+GEA+K       +IN+ A  +E+A G+EKI N Q ++N++I+EK+ 
Sbjct: 358 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 666 KILETYW 672
           KI+ETY+
Sbjct: 416 KIIETYF 422

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/427 (55%), Positives = 304/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
           LP M   + SDD   QL AT +F+++LS E  P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
           Q +AAWALTNIASGTS  TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
           RD VL   A+ P+L   N +   S++R AT TLSNLCRG KP+P +  V  ALP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           +S D + L DACWA+  LS D   + IQAVI+  +  RLVELL H S  V TPAL  VGN
Sbjct: 181 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G+D QTQ +IN G +P  L LL+ + K +IKKE  W ISNI  GN EQIQAVIDA L
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
           I PLV LL+ AE   K+EA WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
           + V L+ LENILK+GEA+K       +IN+ A  +E+A G+EKI N Q ++N++I+EK+ 
Sbjct: 359 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 666 KILETYW 672
           KI+ETY+
Sbjct: 417 KIIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/427 (55%), Positives = 304/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
           LP M   + SDD   QL AT +F+++LS E  P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
           Q +AAWALTNIASGTS  TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
           RD VL   A+ P+L   N +   S++R AT TLSNLCRG KP+P +  V  ALP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           +S D + L DACWA+  LS D   + IQAVI+  +  RLVELL H S  V TPAL  VGN
Sbjct: 181 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G+D QTQ +IN G +P  L LL+ + K +IKKE  W ISNI  GN EQIQAVIDA L
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
           I PLV LL+ AE   K+EA WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
           + V L+ LENILK+GEA+K       +IN+ A  +E+A G+EKI N Q ++N++I+EK+ 
Sbjct: 359 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 666 KILETYW 672
           KI+ETY+
Sbjct: 417 KIIETYF 423

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  421 bits (1082), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/427 (55%), Positives = 304/427 (71%), Gaps = 11/427 (2%)
Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQ-L 308
           LP M   + SDD   QL AT +F+++LS E  P I+ VI++GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
           Q +AAWALTNIASGTS  TKVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG-KPRPLFDQVRPALPALAQLI 427
           RD VL   A+ P+L   N +   S++R AT TLSNLCRG KP+P +  V  ALP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           +S D + L DACWA+  LS D   + IQAVI+  +  RLVELL H S  V TPAL  VGN
Sbjct: 180 YSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 238
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G+D QTQ +IN G +P  L LL+ + K +IKKE  W ISNI  GN EQIQAVIDA L
Sbjct: 239 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 297
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKI 605
           I PLV LL+ AE   K+EA WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I
Sbjct: 298 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Query: 606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
           + V L+ LENILK+GEA+K       +IN+ A  +E+A G+EKI N Q ++N++I+EK+ 
Sbjct: 358 IEVTLDALENILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 666 KILETYW 672
           KI+ETY+
Sbjct: 416 KIIETYF 422

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/422 (55%), Positives = 293/422 (69%), Gaps = 7/422 (1%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIES-GVVPRFVEFLMREDYPQLQFQ 311
           M+  ++S     QL AT +F+KLLS E + PI+EVI + GVV RFVEFL R++   LQF+
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 312 AAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371
           +AW LTNIASG S  T++VI+  AVPIF++LL+S  +DV+EQAVWALGN+A DS+ CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSN 430
           VL    L PLL   ++   L+M R A   LSNLCRGK P P F +V P L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
           D  VL DACWAL  LS D  NDKIQAVI+AGVC RLVELL H    V++PAL  VGNIV 
Sbjct: 205 DTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
           GDD QTQ I+N  A+   L  L+ + K SIKKE  W ISNI  GNR QIQ VIDA +   
Sbjct: 264 GDDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 322
Query: 551 LVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCL 610
           L+++LQ AEF  ++EAAWAI+NA+S G+ +QIKYLV  GCIKPLCDLL   D KIV V L
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382
Query: 611 EGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILET 670
            GLENIL++GE E   +     IN +  L+EEA GL+KIE LQSH+N EI++K+  ++E 
Sbjct: 383 NGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Query: 671 YW 672
           Y+
Sbjct: 441 YF 442

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/422 (55%), Positives = 293/422 (69%), Gaps = 7/422 (1%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVIES-GVVPRFVEFLMREDYPQLQFQ 311
           M+  ++S     QL AT +F+KLLS E + PI+EVI + GVV RFVEFL R++   LQF+
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 312 AAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDL 371
           +AW LTNIASG S  T++VI+  AVPIF++LL+S  +DV+EQAVWALGN+A DS+ CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSN 430
           VL    L PLL   ++   L+M R A   LSNLCRGK P P F +V P L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
           D  VL DACWAL  LS D  NDKIQAVI+AGVC RLVELL H    V++PAL  VGNIV 
Sbjct: 202 DTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 260
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
           GDD QTQ I+N  A+   L  L+ + K SIKKE  W ISNI  GNR QIQ VIDA +   
Sbjct: 261 GDDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 319
Query: 551 LVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCL 610
           L+++LQ AEF  ++EAAWAI+NA+S G+ +QIKYLV  GCIKPLCDLL   D KIV V L
Sbjct: 320 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 379
Query: 611 EGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILET 670
            GLENIL++GE E   +     IN +  L+EEA GL+KIE LQSH+N EI++K+  ++E 
Sbjct: 380 NGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 437
Query: 671 YW 672
           Y+
Sbjct: 438 YF 439

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  353 bits (907), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 242 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 668 LETYW 672
           +E Y+
Sbjct: 473 IEKYF 477

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  353 bits (907), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 242 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 668 LETYW 672
           +E Y+
Sbjct: 473 IEKYF 477

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  353 bits (907), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 192 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 668 LETYW 672
           +E Y+
Sbjct: 423 IEKYF 427

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  353 bits (907), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 218 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 276
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 277 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 335
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 336 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 395
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 396 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 448
Query: 668 LETYW 672
           +E Y+
Sbjct: 449 IEKYF 453

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  353 bits (907), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 242 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 420 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 472
Query: 668 LETYW 672
           +E Y+
Sbjct: 473 IEKYF 477

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 187 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 365 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 417
Query: 668 LETYW 672
           +E Y+
Sbjct: 418 IEKYF 422

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 192 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 668 LETYW 672
           +E Y+
Sbjct: 423 IEKYF 427

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 191 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 369 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 421
Query: 668 LETYW 672
           +E Y+
Sbjct: 422 IEKYF 426

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 198 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 315
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 376 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 428
Query: 668 LETYW 672
           +E Y+
Sbjct: 429 IEKYF 433

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 191 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 309 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 368
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 369 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 421
Query: 668 LETYW 672
           +E Y+
Sbjct: 422 IEKYF 426

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 228 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 345
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 346 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 405
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 406 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 458
Query: 668 LETYW 672
           +E Y+
Sbjct: 459 IEKYF 463

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 187 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 305 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 364
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 365 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 417
Query: 668 LETYW 672
           +E Y+
Sbjct: 418 IEKYF 422

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 226 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 343
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 344 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 403
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 404 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 456
Query: 668 LETYW 672
           +E Y+
Sbjct: 457 IEKYF 461

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 192 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 310 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 369
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 370 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 422
Query: 668 LETYW 672
           +E Y+
Sbjct: 423 IEKYF 427

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  350 bits (897), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/426 (45%), Positives = 273/426 (64%), Gaps = 15/426 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +QF++
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A   S  RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 373 LSEGALIPLLAQLN----EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L            LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H ND +VL D+CWA+  L+ D  N++I+ V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 261 HHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 320 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 378
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV +L  A+F  ++ AAWAI+N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 379 VPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ +
Sbjct: 439 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 491
Query: 668 LETYWC 673
           +E Y+ 
Sbjct: 492 IEKYFS 497

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  348 bits (893), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 193/425 (45%), Positives = 275/425 (64%), Gaps = 15/425 (3%)
Query: 254 MVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           +V G+ S +   QL+AT   +KLLS E  P I+ +I +G++P+FV FL R D   +QF++
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 373 LSEGALIPLLAQLNEHTELSM----LRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLI 427
           +  GA+ PLLA L      S+    LR  T TLSNLCR K P P  D V   LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           H +D +VL D CWA+  L+ D  N++I  V++ GV  +LV+LLG     ++TPAL  +GN
Sbjct: 193 HHDDPEVLADTCWAISYLT-DGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           IV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 310
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV++L  A+F  ++EA WA++N +S GT +QI YLV  G I+PL +LL   D KI+ 
Sbjct: 311 VPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIIL 370
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
           V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ+H+N  +++ S+ +
Sbjct: 371 VILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSL 423
Query: 668 LETYW 672
           +E Y+
Sbjct: 424 IEKYF 428

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 140/250 (56%), Gaps = 16/250 (6%)
Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
           LP + Q ++S+D Q    A      +  D  N++IQAVI+AG    LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
            ALW + NI  G + Q Q +I+ GA+P L+ LL  +    I +E  W +SNIA G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
           QAVIDAG +  LV LL +    I +EA WA+SN +S G ++QI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190
Query: 600 CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNE 659
             + +I+   L  L NI   G  +K             Q V+EA  LEK+E LQSH+N +
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK-------------QAVKEAGALEKLEQLQSHENEK 237
Query: 660 IHEKSVKILE 669
           I +++ + LE
Sbjct: 238 IQKEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 111/198 (56%), Gaps = 5/198 (2%)
Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
           LP + Q ++S D+Q L  A   L  ++    N++IQAVI+AG    LV+LL  P+  +L 
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
            ALW + NI  G + Q Q +I+ GA+P L+ LL  +    I +E  W +SNIA G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
           QAVIDAG +  LV LL +    I +EA WA+SN +S G     K  V E   +P  + LQ
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQ 189
Query: 600 CA-DPKIVTVCLEGLENI 616
            + + KI     E LE I
Sbjct: 190 SSPNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 3/197 (1%)
Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
           LP + Q ++S D+Q L  A   L  ++    N++IQAVI+AG    LV+LL  P+  +L 
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
            ALW + NI  G + Q Q +I+ GA+P L+ LL  +    I +E  W +SNIA G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
           QAVIDAG +  LV LL +    I +EA WA+SN +S G ++Q + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQS 190
Query: 600 CADPKIVTVCLEGLENI 616
             + KI     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 112/205 (54%), Gaps = 15/205 (7%)
Query: 465 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEV 524
           ++V+ L  P    L  AL  +  I  G + Q Q +I+ GA+P L+ LL  +    I +E 
Sbjct: 16  QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEA 74
Query: 525 SWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKY 584
            W +SNIA G  EQIQAVIDAG +  LV LL +    I +EA WA+SN +S G ++QI+ 
Sbjct: 75  LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQA 133
Query: 585 LVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE 644
           ++  G +  L  LL   + +I+   L  L NI   G  +K             Q V+EA 
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-------------QAVKEAG 180
Query: 645 GLEKIENLQSHDNNEIHEKSVKILE 669
            LEK+E LQSH+N +I +++ + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 110/197 (55%), Gaps = 3/197 (1%)
Query: 420 LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT 479
           LP + Q ++S+D Q    A      +  D  N++IQAVI+AG    LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI 539
            ALW + NI  G + Q Q +I+ GA+P L+ LL  +    I +E  W +SNIA G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
           QAVIDAG +  LV LL +    I +EA WA+SN +S G ++Q + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQS 190
Query: 600 CADPKIVTVCLEGLENI 616
             + KI     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 15/182 (8%)
Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           I+   + Q Q +I+ GA+P L+ LL  +    I +E  W +SNIA G  EQIQAVIDAG 
Sbjct: 39  ILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97
Query: 548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT 607
           +  LV LL +    I +EA WA+SN +S G ++QI+ ++  G +  L  LL   + +I+ 
Sbjct: 98  LPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI 667
             L  L NI   G  +K             Q V+EA  LEK+E LQSH+N +I +++ + 
Sbjct: 157 EALWALSNIASGGNEQK-------------QAVKEAGALEKLEQLQSHENEKIQKEAQEA 203
Query: 668 LE 669
           LE
Sbjct: 204 LE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 10/241 (4%)
Query: 378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPA--LPALAQLIHSNDEQVL 435
           L+ LL   +  T+    R     L+ +  G P      +  A  +  L +L+ S D +V 
Sbjct: 7   LVKLLTSTDSETQKEAAR----DLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 436 TDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495
            +A  AL  ++    ++ I+A+++AG    LV+LL      V   A   + NI  G D  
Sbjct: 62  KEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 120
Query: 496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL 555
            + I++ G V  L+ LL     + ++KE +  ++NIA G  E I+A++DAG +  LV LL
Sbjct: 121 IKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 179
Query: 556 QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN 615
            + + ++++EAA A++N +S G    IK +V  G ++ L  LL   D ++       LEN
Sbjct: 180 TSTDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238
Query: 616 I 616
           I
Sbjct: 239 I 239

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 126/252 (50%), Gaps = 16/252 (6%)
Query: 423 LAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPAL 482
           L +L+ S D +   +A   L  ++    +  I+A+++AG    LV+LL      V   A 
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPAS-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 65
Query: 483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV 542
             + NI  G D   + I++ G V  L+ LL     + ++KE +  ++NIA G  E I+A+
Sbjct: 66  RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAI 124
Query: 543 IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD 602
           +DAG +  LV LL + + ++++EAA A++N +S G  + IK +V  G ++ L  LL   D
Sbjct: 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTD 183
Query: 603 PKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHE 662
            ++       L NI              G  +    +V +A G+E ++ L +  ++E+ +
Sbjct: 184 SEVQKEAARALANIAS------------GPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQK 230
Query: 663 KSVKILETYWCG 674
           ++ + LE    G
Sbjct: 231 EAQRALENIKSG 242

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G +  V
Sbjct: 78  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
              G L  ++A LN+ T +  L I T  L  L  G        +    P AL  ++ +  
Sbjct: 137 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
            E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N+  
Sbjct: 196 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 251
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
             D  T+     G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  
Sbjct: 252 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 309
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
           LV  +  A    DI E A  A+ + +SR
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSR 337

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G +  V
Sbjct: 85  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 143
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
              G L  ++A LN+ T +  L I T  L  L  G        +    P AL  ++ +  
Sbjct: 144 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 202
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
            E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N+  
Sbjct: 203 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 258
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
             D  T+     G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  
Sbjct: 259 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 316
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
           LV  +  A    DI E A  A+ + +SR
Sbjct: 317 LVRTVLRAGDREDITEPAICALRHLTSR 344

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G +  V
Sbjct: 82  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 140
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
              G L  ++A LN+ T +  L I T  L  L  G        +    P AL  ++ +  
Sbjct: 141 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 199
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
            E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N+  
Sbjct: 200 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 255
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
             D  T+     G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  
Sbjct: 256 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 313
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
           LV  +  A    DI E A  A+ + +SR
Sbjct: 314 LVRTVLRAGDREDITEPAICALRHLTSR 341

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
           E    + +   +P  VK+L SP D V   A+  L N+     G +  V   G L  ++A 
Sbjct: 90  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
           LN+ T +  L I T  L  L  G        +    P AL  ++ +   E++L      L
Sbjct: 150 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 208
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
             LS   +N    A++EAG    L   L  PS  ++   LWT+ N+    D  T+     
Sbjct: 209 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 263
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
           G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  LV  +  A    
Sbjct: 264 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 322
Query: 561 DIKEEAAWAISNASSR 576
           DI E A  A+ + +SR
Sbjct: 323 DITEPAICALRHLTSR 338

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G +  V
Sbjct: 79  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 137
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
              G L  ++A LN+ T +  L I T  L  L  G        +    P AL  ++ +  
Sbjct: 138 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 196
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
            E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N+  
Sbjct: 197 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 252
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
             D  T+     G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  
Sbjct: 253 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 310
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
           LV  +  A    DI E A  A+ + +SR
Sbjct: 311 LVRTVLRAGDREDITEPAICALRHLTSR 338

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G +  V
Sbjct: 83  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
              G L  ++A LN+ T +  L I T  L  L  G        +    P AL  ++ +  
Sbjct: 142 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
            E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N+  
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 256
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
             D  T+     G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  
Sbjct: 257 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 314
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
           LV  +  A    DI E A  A+ + +SR
Sbjct: 315 LVRTVLRAGDREDITEPAICALRHLTSR 342

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
           E    + +   +P  VK+L SP D V   A+  L N+     G +  V   G L  ++A 
Sbjct: 79  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 138
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
           LN+ T +  L I T  L  L  G        +    P AL  ++ +   E++L      L
Sbjct: 139 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 197
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
             LS   +N    A++EAG    L   L  PS  ++   LWT+ N+    D  T+     
Sbjct: 198 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 252
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
           G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  LV  +  A    
Sbjct: 253 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 311
Query: 561 DIKEEAAWAISNASSR 576
           DI E A  A+ + +SR
Sbjct: 312 DITEPAICALRHLTSR 327

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G +  V
Sbjct: 84  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 142
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
              G L  ++A LN+ T +  L I T  L  L  G        +    P AL  ++ +  
Sbjct: 143 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 201
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
            E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N+  
Sbjct: 202 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 257
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
             D  T+     G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  
Sbjct: 258 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 315
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
           LV  +  A    DI E A  A+ + +SR
Sbjct: 316 LVRTVLRAGDREDITEPAICALRHLTSR 343

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
           E    + +   +P  VK+L SP D V   A+  L N+     G +  V   G L  ++A 
Sbjct: 77  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
           LN+ T +  L I T  L  L  G        +    P AL  ++ +   E++L      L
Sbjct: 137 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 195
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
             LS   +N    A++EAG    L   L  PS  ++   LWT+ N+    D  T+     
Sbjct: 196 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 250
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
           G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  LV  +  A    
Sbjct: 251 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 309
Query: 561 DIKEEAAWAISNASSR 576
           DI E A  A+ + +SR
Sbjct: 310 DITEPAICALRHLTSR 325

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 12/268 (4%)
Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
           A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G +  V
Sbjct: 83  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 141
Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-N 430
              G L  ++A LN+ T +  L I T  L  L  G        +    P AL  ++ +  
Sbjct: 142 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 200
Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
            E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N+  
Sbjct: 201 YEKLLWTTSRVLKVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL-- 256
Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
             D  T+     G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  
Sbjct: 257 -SDAATKQEGMEGLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEA 314
Query: 551 LVNLLQNA--EFDIKEEAAWAISNASSR 576
           LV  +  A    DI E A  A+ + +SR
Sbjct: 315 LVRTVLRAGDREDITEPAICALRHLTSR 342

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
           E    + +   +P  VK+L SP D V   A+  L N+     G +  V   G L  ++A 
Sbjct: 77  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
           LN+ T +  L I T  L  L  G        +    P AL  ++ +   E++L      L
Sbjct: 137 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 195
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
             LS   +N    A++EAG    L   L  PS  ++   LWT+ N+    D  T+     
Sbjct: 196 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 250
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
           G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  LV  +  A    
Sbjct: 251 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 309
Query: 561 DIKEEAAWAISNASSR 576
           DI E A  A+ + +SR
Sbjct: 310 DITEPAICALRHLTSR 325

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
           E    + +   +P  VK+L SP D V   A+  L N+     G +  V   G L  ++A 
Sbjct: 92  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
           LN+ T +  L I T  L  L  G        +    P AL  ++ +   E++L      L
Sbjct: 152 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 210
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
             LS   +N    A++EAG    L   L  PS  ++   LWT+ N+    D  T+     
Sbjct: 211 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 265
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
           G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  LV  +  A    
Sbjct: 266 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324
Query: 561 DIKEEAAWAISNASSR 576
           DI E A  A+ + +SR
Sbjct: 325 DITEPAICALRHLTSR 340

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
           E    + +   +P  VK+L SP D V   A+  L N+     G +  V   G L  ++A 
Sbjct: 81  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 140
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
           LN+ T +  L I T  L  L  G        +    P AL  ++ +   E++L      L
Sbjct: 141 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 199
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
             LS   +N    A++EAG    L   L  PS  ++   LWT+ N+    D  T+     
Sbjct: 200 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 254
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
           G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  LV  +  A    
Sbjct: 255 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 313
Query: 561 DIKEEAAWAISNASSR 576
           DI E A  A+ + +SR
Sbjct: 314 DITEPAICALRHLTSR 329

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 108/256 (42%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
           E    + +   +P  V +L SP D V   A+  L N+     G +  V   G L  ++A 
Sbjct: 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHS-NDEQVLTDACWAL 442
           LN+ T +  L I T  L  L  G        +    P AL  ++ +   E++L      L
Sbjct: 285 LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
             LS   +N    A++EAG    L   L  PS  ++   LWT+ N+    D  T+     
Sbjct: 344 KVLSVCSSNKP--AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGME 398
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
           G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  LV  +  A    
Sbjct: 399 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 457
Query: 561 DIKEEAAWAISNASSR 576
           DI E A  A+ + +SR
Sbjct: 458 DITEPAICALRHLTSR 473

>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 470

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 106/256 (41%), Gaps = 11/256 (4%)
Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
           E    + +   +P  VK L SP D V   A+  L N+     G +  V   G L   +A 
Sbjct: 34  EGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVAL 93
Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALP-ALAQLIHSND-EQVLTDACWAL 442
           LN+ T +  L I T  L  L  G        +    P AL  +  +   E++L      L
Sbjct: 94  LNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVL 152
Query: 443 FGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 502
             LS   +N    A++EAG    L   L  PS  ++   LWT+ N+    D  T+     
Sbjct: 153 KVLSVCSSNKP--AIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGXE 207
Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF 560
           G +  L+ LL  +  N +    + I+SN+ C N +    V   G I  LV  +  A    
Sbjct: 208 GLLGTLVQLLGSDDINVVTC-AAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDRE 266
Query: 561 DIKEEAAWAISNASSR 576
           DI E A  A+ + +SR
Sbjct: 267 DITEPAICALRHLTSR 282

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	684
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-169
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-47
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-36
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-163
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-160
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-61
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-102
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-72
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-63
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-60
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-51
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-101
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-80
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-69
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-65
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-53
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-85
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-79
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-20
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-85
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-81
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-70
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-60
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-77
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-49
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-68
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-54
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-31
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-20
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-57
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-50
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-33
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-53
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-20
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-14
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-51
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	8e-37
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-30
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-21
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-36
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-33
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-32
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-21
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-18
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-15
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-14
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-13
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-12
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-09
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-08
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	8e-07
1qgr_A	876	Protein (importin beta subunit); transport recepto	5e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	3e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	7e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-04
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	4e-04
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	7e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  490 bits (1264), Expect = e-169
 Identities = 237/426 (55%), Positives = 294/426 (69%), Gaps = 7/426 (1%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIE-SMPIEEVI-ESGVVPRFVEFLMREDYPQ 307
           I   M+  ++S     QL AT +F+KLLS E + PI+EVI   GVV RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 308 LQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367
           LQF++AW LTNIASG S  T++VI+  AVPIF++LL+S  +DV+EQAVWALGN+A DS+ 
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQL 426
           CRD VL    L PLL   ++   L+M R A   LSNLCRGK P P F +V P L  L+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 427 IHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG 486
           +  +D  VL DACWAL  LS D  NDKIQAVI+AGVC RLVELL H    V++PAL  VG
Sbjct: 201 LFVSDTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259

Query: 487 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAG 546
           NIV GDD QTQ I+N  A+  LL LL  + K SIKKE  W ISNI  GNR QIQ VIDA 
Sbjct: 260 NIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318

Query: 547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIV 606
           +   L+++LQ AEF  ++EAAWAI+NA+S G+ +QIKYLV  GCIKPLCDLL   D KIV
Sbjct: 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378

Query: 607 TVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVK 666
            V L GLENIL++GE E   +     IN +  L+EEA GL+KIE LQSH+N EI++K+  
Sbjct: 379 QVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436

Query: 667 ILETYW 672
           ++E Y+
Sbjct: 437 LIEHYF 442

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  171 bits (435), Expect = 6e-47
 Identities = 61/355 (17%), Positives = 135/355 (38%), Gaps = 20/355 (5%)

Query: 318 NIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA--ADSSGCRDLVLSE 375
                   N ++          ++++ S S + +  A      +     +    +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRP-ALPALAQLIHSNDEQV 434
           G +   +  L      ++   +   L+N+  G        ++  A+P   +L+ S  E V
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP-SVLTPALWTVGNIVMGDD 493
              A WAL  ++GD +      V++  +   L++L    +  ++   A+W + N+  G  
Sbjct: 124 QEQAVWALGNIAGD-STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182

Query: 494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVN 553
              +       +  +L+ L+      +  +  W +S ++ G  ++IQAVIDAG+   LV 
Sbjct: 183 PPPEFAKVSPCLN-VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 554 LLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGL 613
           LL + ++ +   A  A+ N  + G   Q + ++    ++ L  LL      I       +
Sbjct: 242 LLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

Query: 614 ENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKIL 668
            NI              G+  Q  Q V +A     + ++         +++   +
Sbjct: 301 SNITA------------GNRAQ-IQTVIDANIFPALISILQTAEFRTRKEAAWAI 342

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  140 bits (353), Expect = 6e-36
 Identities = 48/250 (19%), Positives = 97/250 (38%), Gaps = 14/250 (5%)

Query: 240 PSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEF 299
           P          L ++   ++  D ++  +A      L    +  I+ VI++GV  R VE 
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242

Query: 300 LMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALG 359
           LM  D  ++   A  A+ NI +G    T+V++   A+   + LL+SP + ++++A W + 
Sbjct: 243 LMHND-YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 360 NVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPA 419
           N+ A +      V+    + P L  + +  E    + A   ++N   G        +   
Sbjct: 302 NITAGNRAQIQTVIDAN-IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL 360

Query: 420 --LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKI----------QAVIEAGVCGRLV 467
             +  L  L+   D +++  A   L  +      +              + EA    ++ 
Sbjct: 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIE 420

Query: 468 ELLGHPSPSV 477
            L  H +  +
Sbjct: 421 FLQSHENQEI 430

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  479 bits (1235), Expect = e-163
 Identities = 244/468 (52%), Positives = 317/468 (67%), Gaps = 16/468 (3%)

Query: 216 KRESFIKKRR------EGLQSQSYLPSALAPSINLHTKL-EILPMMVAGVWSDDNNLQLE 268
           KR+  + KRR      +G  S     S+++     +++L + LP M   + SDD   QL 
Sbjct: 47  KRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLS 106

Query: 269 ATTQFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327
           AT +F+++LS E   PI+ VI++GVVPR VEF+       LQ +AAWALTNIASGTS  T
Sbjct: 107 ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166

Query: 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE 387
           KVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  RD VL   A+ P+L   N 
Sbjct: 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 226

Query: 388 HTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446
           +   S++R AT TLSNLCRGK P+P +  V  ALP LA+LI+S D + L DACWA+  LS
Sbjct: 227 NK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285

Query: 447 GDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVP 506
            D   + IQAVI+  +  RLVELL H S  V TPAL  VGNIV G+D QTQ +IN G +P
Sbjct: 286 -DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP 344

Query: 507 CLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA 566
            L  LL    K +IKKE  W ISNI  GN EQIQAVIDA LI PLV LL+ AE+  K+EA
Sbjct: 345 ALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403

Query: 567 AWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEK 624
            WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I+ V L+ LENILK+GEA+K
Sbjct: 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 463

Query: 625 NTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
                  +IN+ A  +E+A G+EKI N Q ++N++I+EK+ KI+ETY+
Sbjct: 464 EARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  471 bits (1213), Expect = e-160
 Identities = 197/463 (42%), Positives = 281/463 (60%), Gaps = 17/463 (3%)

Query: 216 KRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK 275
                +     G        +      N  T    +  +V G+ S++   QL+AT   +K
Sbjct: 26  FERQHMDSPDLGTDDDD--KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARK 83

Query: 276 LLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD 334
           LLS E   PI+ +I +G++P+FV FL + D   +QF++AWALTNIASGTSE TK V++  
Sbjct: 84  LLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG 143

Query: 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH----TE 390
           A+P F+ LLASP   + EQAVWALGN+A D S  RDLV+  GA+ PLLA L         
Sbjct: 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203

Query: 391 LSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR 449
              LR  T TLSNLCR K P P  D V   LP L +L+H ND +VL D+CWA+  L+ D 
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT-DG 262

Query: 450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL 509
            N++I+ V++ GV  +LV+LLG     ++TPAL  +GNIV G D QTQ +I+ GA+    
Sbjct: 263 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322

Query: 510 ALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWA 569
           +LL  N K +I+KE +W +SNI  G ++QIQ V++ GL+  LV +L  A+F  ++EAAWA
Sbjct: 323 SLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381

Query: 570 ISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSD 629
           I+N +S GT +QI YLV  G I+PL +LL   D KI+ V L+ + NI +  E        
Sbjct: 382 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE-------K 434

Query: 630 IGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
           +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E Y+
Sbjct: 435 LGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  212 bits (541), Expect = 3e-61
 Identities = 108/412 (26%), Positives = 178/412 (43%), Gaps = 19/412 (4%)

Query: 240 PSINLHTKLEILPMMVAG-VWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVE 298
           P I+   +  ++P  V+    +D + +Q E+      + S  S   + V++ G +P F+ 
Sbjct: 91  PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150

Query: 299 FLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDD-----VREQ 353
            L       +  QA WAL NIA   S    +VI+H A+   + LLA P            
Sbjct: 151 LLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209

Query: 354 AVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF 413
             W L N+  + +    L   E  L P L +L  H +  +L  +   +S L  G      
Sbjct: 210 LTWTLSNLCRNKNPAPPLDAVEQIL-PTLVRLLHHNDPEVLADSCWAISYLTDGPN-ERI 267

Query: 414 DQVRPA--LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG 471
           + V     +P L +L+ + +  ++T A  A+  +     +++ Q VI+AG       LL 
Sbjct: 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLT 326

Query: 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNI 531
           +P  ++   A WT+ NI  G   Q Q ++NHG VP L+ +L        +KE +W I+N 
Sbjct: 327 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNY 385

Query: 532 AC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN----ASSRGTHDQIKYLV 586
              G  EQI  ++  G+I PL+NLL   +  I +    AISN    A   G  +++  ++
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445

Query: 587 TE-GCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFA 637
            E G +  +  L +  +  +    L  +E    V E E            FA
Sbjct: 446 EECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFA 497

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  145 bits (368), Expect = 1e-37
 Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 9/276 (3%)

Query: 232 SYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESG 291
           S L     P+  L    +ILP +V  +  +D  +  ++      L    +  IE V++ G
Sbjct: 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG 274

Query: 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVR 351
           VVP+ V+ L   +   +   A  A+ NI +GT E T+ VI+  A+ +F  LL +P  +++
Sbjct: 275 VVPQLVKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ 333

Query: 352 EQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP 411
           ++A W + N+ A        V++ G L+P L  +    +    + A   ++N   G    
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392

Query: 412 LFDQVR--PALPALAQLIHSNDEQVLTDACWAL-----FGLSGDRNNDKIQAVIEAGVCG 464
               +     +  L  L+ + D +++     A+                   + E G   
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 452

Query: 465 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 500
           ++  L  H + SV   +L  +      ++ + Q ++
Sbjct: 453 KIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVV 488

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  325 bits (834), Expect = e-102
 Identities = 65/432 (15%), Positives = 131/432 (30%), Gaps = 18/432 (4%)

Query: 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQL 308
           +++  +V  + + ++      T      LS     +  + +SG +P  V+ L       +
Sbjct: 56  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-DSV 114

Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
            F A   L N+          V     +   V LL   +          L  +A  +   
Sbjct: 115 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174

Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH 428
           + ++L+ G    L+  +  +T   +L   +  L  L               + AL   + 
Sbjct: 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 234

Query: 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488
              ++++ +  W L  LS              G+ G LV+LLG    +V+T A   + N+
Sbjct: 235 DPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 489 VMGDDFQTQCIINHGAVPCLLALLIHNH-KNSIKKEVSWIISNIACGNRE---QIQAVID 544
              +      +   G +  L+  ++    +  I +     + ++   ++E      AV  
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK 604
              +  +V LL         +A   +    +         L  +G I  L  LL  A   
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQD 409

Query: 605 IVTVCLEGLENILKVGEAEK--------NTDSDIGDINQFAQLVEEAEGLEKIENLQSHD 656
                  G      V                  +        ++     +     L    
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 469

Query: 657 NNEIHEKSVKIL 668
              I   +  +L
Sbjct: 470 IENIQRVAAGVL 481

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  244 bits (625), Expect = 6e-72
 Identities = 86/421 (20%), Positives = 150/421 (35%), Gaps = 29/421 (6%)

Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
           +P +   +  +D  +  +A     +L   E+     +    +V   V  +   +  +   
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75

Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
             A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G + 
Sbjct: 76  CTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134

Query: 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRP--ALPALAQLIH 428
            V   G  +  +  L   T +  L I T  L  L  G        +       AL  ++ 
Sbjct: 135 AVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLIILASGGPQALVNIMR 192

Query: 429 S-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           +   E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250

Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           +    D  T+     G +  L+ LL  +   ++    + I+SN+ C N +    V   G 
Sbjct: 251 L---SDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGG 306

Query: 548 IGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHD--QIKYLVTEGCIKPLCDLLQCADP 603
           I  LV  +  A    DI E A  A+ + +SR          +     +  +  LL     
Sbjct: 307 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 366

Query: 604 KIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEK 663
             +     GL   L +  A                 + E   + ++  L    + +   +
Sbjct: 367 WPLIKATVGLIRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQRR 413

Query: 664 S 664
           +
Sbjct: 414 T 414

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  220 bits (562), Expect = 5e-63
 Identities = 64/386 (16%), Positives = 136/386 (35%), Gaps = 23/386 (5%)

Query: 284 IEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL 343
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 344 ASPSD-DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS 402
            + +D +        L N++    G    +   G +  L+  L    + S+L  A TTL 
Sbjct: 66  QNTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLH 123

Query: 403 NLCRGKP-RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG 461
           NL   +    +  ++   L  +  L++  + + L      L  L+   N +    ++ +G
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKLIILASG 182

Query: 462 VCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIK 521
               LV ++   +   L      V  ++         I+  G +  L   L       + 
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLV 241

Query: 522 KEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQ 581
           +   W + N++    +Q       GL+G LV LL + + ++   AA  +SN +    +  
Sbjct: 242 QNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKN 297

Query: 582 IKYLVTEGCIKPLCDLLQCADPK--IVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQL 639
              +   G I+ L   +  A  +  I    +  L ++           S   +       
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT----------SRHQEAEMAQNA 347

Query: 640 VEEAEGLEKIENLQSHDNNEIHEKSV 665
           V    GL  +  L    ++    K+ 
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  211 bits (539), Expect = 6e-60
 Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 21/346 (6%)

Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ 384
                 +   A+P   KLL      V  +A   +  ++   +    ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 385 LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFG 444
           +    ++   R    TL NL   +   L       +PAL +++ S  + VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 445 LSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGA 504
           L   +   K  AV  AG   ++V LL   +   L      +  +  G+      I+  G 
Sbjct: 125 LLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 505 VPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKE 564
              L+ ++       +    S ++  +         A+++AG +  L   L +    + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242

Query: 565 EAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEK 624
              W + N S        K    EG +  L  LL   D  +VT     L N+       K
Sbjct: 243 NCLWTLRNLSD----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 625 NTDSDIGDINQFAQLVEEAEGLEKIENL--QSHDNNEIHEKSVKIL 668
                         +V +  G+E +     ++ D  +I E ++  L
Sbjct: 299 -------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  188 bits (478), Expect = 2e-51
 Identities = 72/442 (16%), Positives = 137/442 (30%), Gaps = 34/442 (7%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
               +V  + +      L  T++  K+LS+ S     ++E+G +      L      +L 
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLV 241

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
               W L N++      TK       +   V+LL S   +V   A   L N+  ++   +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 370 DLVLSEGALIPLLAQLNEHTE-LSMLRIATTTLSNLCRGKPRPLFDQVRP----ALPALA 424
            +V   G +  L+  +    +   +   A   L +L          Q        LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 425 QLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484
           +L+H      L  A   L              + E G   RLV+LL              
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417

Query: 485 VGNIVMGDDFQT---------------------QCIINHGAVPCLLALLIHNHKNSIKKE 523
                  +  +                        I     +P  + LL ++   +I++ 
Sbjct: 418 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRV 476

Query: 524 VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIK 583
            + ++  +A  ++E  +A+   G   PL  LL +    +   AA  +   S     D  K
Sbjct: 477 AAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 535

Query: 584 YLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEA 643
            L  E     L      A  +   + L+       +G  + +          + Q     
Sbjct: 536 RLSVE-LTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGM 594

Query: 644 EGLEKIENLQSHDNNEIHEKSV 665
           + + + E    H   +     +
Sbjct: 595 DPMMEHEMGGHHPGADYPVDGL 616

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  112 bits (282), Expect = 4e-26
 Identities = 29/215 (13%), Positives = 71/215 (33%), Gaps = 9/215 (4%)

Query: 451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 510
           N +  A +       L +LL      V+  A   V  +   +  +   + +   V  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 511 LLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570
            + + +     +  +  + N+   +RE + A+  +G I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 571 SNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDI 630
            N            +   G ++ +  LL   + K + +  + L+ +    +  K      
Sbjct: 123 HNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181

Query: 631 GDINQFAQLVEEAEGLEKIE-------NLQSHDNN 658
           G       ++      + +         L    +N
Sbjct: 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  319 bits (818), Expect = e-101
 Identities = 65/431 (15%), Positives = 129/431 (29%), Gaps = 18/431 (4%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
           ++  +V  + + ++      T      LS     +  + +SG +P  V+ L       + 
Sbjct: 60  MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV-DSVL 118

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
           F A   L N+          V     +   V LL   +          L  +A  +   +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS 429
            ++L+ G    L+  +  +T   +L   +  L  L               + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489
             ++++ +  W L  LS              G+ G LV+LLG    +V+T A   + N+ 
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 490 MGDDFQTQCIINHGAVPCLLALLIHNHKN-SIKKEVSWIISNIACGNRE---QIQAVIDA 545
             +      +   G +  L+  ++       I +     + ++   ++E      AV   
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354

Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKI 605
             +  +V LL         +A   +    +         L  +G I  L  LL  A    
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 606 VTVCLEGLENILKVGEAEK--------NTDSDIGDINQFAQLVEEAEGLEKIENLQSHDN 657
                 G      V                  +        ++     +     L     
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 473

Query: 658 NEIHEKSVKIL 668
             I   +  +L
Sbjct: 474 ENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  263 bits (675), Expect = 3e-80
 Identities = 89/420 (21%), Positives = 152/420 (36%), Gaps = 27/420 (6%)

Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
           +P +   +  +D  +  +A     +L   E+     +    +V   V  +   +  +   
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
             A  L N+ S   E    + +   +P  VK+L SP D V   A+  L N+     G + 
Sbjct: 79  CTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137

Query: 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR-PLFDQVRPALPALAQLIHS 429
            V   G L  ++A LN+      L I T  L  L  G     L         AL  ++ +
Sbjct: 138 AVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 430 -NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488
              E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N+
Sbjct: 197 YTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548
               D  T+     G +  L+ LL  +   ++    + I+SN+ C N +    V   G I
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310

Query: 549 GPLVNLLQNA--EFDIKEEAAWAISNASSRGTHD--QIKYLVTEGCIKPLCDLLQCADPK 604
             LV  +  A    DI E A  A+ + +SR          +     +  +  LL      
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370

Query: 605 IVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKS 664
            +     GL   L +  A                 + E   + ++  L    + +   ++
Sbjct: 371 PLIKATVGLIRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDTQRRT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  235 bits (601), Expect = 2e-69
 Identities = 69/443 (15%), Positives = 137/443 (30%), Gaps = 45/443 (10%)

Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQF 310
           +P +V  + S  +++   A T    LL  +      V  +G + + V  L+ +   +   
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLA 161

Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
                L  +A G  E+  +++        V ++ + + +        +  V +  S  + 
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221

Query: 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN 430
            ++  G +  L   L       +++    TL NL     +     +   L  L QL+ S+
Sbjct: 222 AIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSD 278

Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL--GHPSPSVLTPALWTVGNI 488
           D  V+T A   L  L+ + N      V + G    LV  +        +  PA+  + ++
Sbjct: 279 DINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337

Query: 489 VMGDDF---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA 545
                        +  H  +P ++ LL H   +    + +  +             + + 
Sbjct: 338 TSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLREQ 396

Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRG--------------------THDQIKYL 585
           G I  LV LL  A  D +   +   +                                 +
Sbjct: 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 456

Query: 586 VTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEG 645
                I     LL      I  V    L  + +  EA              A+ +E    
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA--------------AEAIEAEGA 502

Query: 646 LEKIENLQSHDNNEIHEKSVKIL 668
              +  L    N  +   +  +L
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  223 bits (570), Expect = 4e-65
 Identities = 66/356 (18%), Positives = 125/356 (35%), Gaps = 24/356 (6%)

Query: 315 ALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS 374
           A+ N+ +         +   A+P   KLL      V  +A   +  ++   +    ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
              +  ++  +    ++   R    TL NL   +   L       +PAL +++ S  + V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           L  A   L  L   +   K  AV  AG   ++V LL   +   L      +  +  G+  
Sbjct: 118 LFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
               I+  G    L+ ++       +    S ++  +         A+++AG +  L   
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLH 235

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE 614
           L +    + +   W + N S        K    EG +  L  LL   D  +VT     L 
Sbjct: 236 LTDPSQRLVQNCLWTLRNLS----DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291

Query: 615 NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENL--QSHDNNEIHEKSVKIL 668
           N+       K              +V +  G+E +     ++ D  +I E ++  L
Sbjct: 292 NLTCNNYKNK-------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  189 bits (482), Expect = 9e-53
 Identities = 60/372 (16%), Positives = 116/372 (31%), Gaps = 34/372 (9%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
               +V  + +      L  T++  K+LS+ S     ++E+G +       + +   +L 
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL-HLTDPSQRLV 244

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
               W L N++      TK       +   V+LL S   +V   A   L N+  ++   +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 370 DLVLSEGALIPLLAQL-NEHTELSMLRIATTTLSNLCRGKPRP----LFDQVRPALPALA 424
            +V   G +  L+  +        +   A   L +L              ++   LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 425 QLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484
           +L+H      L  A   L              + E G   RLV+LL              
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID 544
                  +  + + I+                           +  +A  +      +  
Sbjct: 421 GTQQQFVEGVRMEEIVEGCT---------------------GALHILAR-DVHNRIVIRG 458

Query: 545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK 604
              I   V LL +   +I+  AA  +   +     +  + +  EG   PL +LL   +  
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEG 516

Query: 605 IVTVCLEGLENI 616
           + T     L  +
Sbjct: 517 VATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  123 bits (310), Expect = 7e-30
 Identities = 55/287 (19%), Positives = 93/287 (32%), Gaps = 28/287 (9%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL-MREDYPQL 308
           +L  +V  + SDD N+   A      L          V + G +   V  +    D   +
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 309 QFQAAWALTNIASGTSENTKV---VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS 365
              A  AL ++ S   E       V  H  +P+ VKLL  PS     +A   L    A  
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 366 SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQ 425
                 +  +GA IP L QL         R  +   +     +                 
Sbjct: 387 PANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG---------------- 429

Query: 426 LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTV 485
                 E+++     AL  L+ D +N     +         V+LL  P  ++   A   +
Sbjct: 430 ---VRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 486 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532
             +    +   + I   GA   L  LL H+    +    + ++  ++
Sbjct: 485 CELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  268 bits (688), Expect = 1e-85
 Identities = 95/251 (37%), Positives = 139/251 (55%), Gaps = 16/251 (6%)

Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478
            LP + Q ++S+D Q    A      +     N++IQAVI+AG    LV+LL  P+  +L
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQIL-SDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ 538
             ALW + NI  G + Q Q +I+ GA+P L+ LL   ++  I +E  W +SNIA G  EQ
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQ 130

Query: 539 IQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL 598
           IQAVIDAG +  LV LL +    I +EA WA+SN  + G ++QI+ ++  G +  L  LL
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQIQAVIDAGALPALVQLL 189

Query: 599 QCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNN 658
              + +I+   L  L NI   G  +K             Q V+EA  LEK+E LQSH+N 
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQK-------------QAVKEAGALEKLEQLQSHENE 236

Query: 659 EIHEKSVKILE 669
           +I +++ + LE
Sbjct: 237 KIQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  251 bits (644), Expect = 4e-79
 Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 4/242 (1%)

Query: 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQL 308
             LP M   + SDD   QL AT +F ++LS  +  I+ VI++G +P  V+ L   +  Q+
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQI 70

Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
             +A WAL+NIASG +E  + VI+  A+P  V+LL+SP++ + ++A+WAL N+A+  +  
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVR-PALPALAQLI 427
              V+  GA +P L QL       +L+ A   LSN+  G    +   +   ALPAL QL+
Sbjct: 131 IQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189

Query: 428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
            S +EQ+L +A WAL  ++    N++ QAV EAG   +L +L  H +  +   A   +  
Sbjct: 190 SSPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 488 IV 489
           + 
Sbjct: 249 LQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 88.5 bits (220), Expect = 7e-20
 Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 503 GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDI 562
             +P +   L  +     +   +   S I     EQIQAVIDAG +  LV LL +    I
Sbjct: 12  SELPQMTQQLNSDDMQ-EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA 622
            +EA WA+SN +S G ++QI+ ++  G +  L  LL   + +I+   L  L NI      
Sbjct: 71  LQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI------ 123

Query: 623 EKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
                      N+  Q V +A  L  +  L S  N +I ++++
Sbjct: 124 -------ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
            LP +V  + S +  +  EA      + S  +  I+ VI++G +P  V+ L   +  Q+ 
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQIL 197

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAA 363
            +A WAL+NIASG +E  + V E  A+    +L +  ++ ++++A  AL  + +
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 536 REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC 595
           R           +  +   L + +   +  A    S   S   ++QI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALV 60

Query: 596 DLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH 655
            LL   + +I+   L  L NI              G   Q  Q V +A  L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWALSNIA------------SGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 656 DNNEIHEKSVKIL 668
            N +I ++++  L
Sbjct: 108 PNEQILQEALWAL 120

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  284 bits (727), Expect = 2e-85
 Identities = 64/431 (14%), Positives = 129/431 (29%), Gaps = 18/431 (4%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
           ++  +V  + + ++      T+     LS     +  + +SG +P  V  L       + 
Sbjct: 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML-GSPVDSVL 251

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
           F A   L N+          V     +   V LL   +          L  +A  +   +
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311

Query: 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS 429
            ++L+ G    L+  +  +T   +L   +  L  L               + AL   +  
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371

Query: 430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489
             ++++ +  W L  LS              G+ G LV+LLG    +V+T A   + N+ 
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427

Query: 490 MGDDFQTQCIINHGAVPCLLALLIHNHKN-SIKKEVSWIISNIACGNRE---QIQAVIDA 545
             +      +   G +  L+  ++       I +     + ++   +++      AV   
Sbjct: 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH 487

Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKI 605
             +  +V LL         +A   +    +         L  +G I  L  LL  A    
Sbjct: 488 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 546

Query: 606 VTVCLEGLENILKVGEAEKNTD--------SDIGDINQFAQLVEEAEGLEKIENLQSHDN 657
                 G      V                  +        ++     +     L     
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606

Query: 658 NEIHEKSVKIL 668
             I   +  +L
Sbjct: 607 ENIQRVAAGVL 617

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  274 bits (701), Expect = 1e-81
 Identities = 86/417 (20%), Positives = 149/417 (35%), Gaps = 27/417 (6%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
            +P +   +  +D  +  +A     +L   E+     +    +V   V  +   +  +  
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
              +  L N++    E    + +   +P  V +L SP D V   A+  L N+     G +
Sbjct: 211 RCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269

Query: 370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRP-ALPALAQLIH 428
             V   G L  ++A LN+      L I T  L  L  G        +      AL  ++ 
Sbjct: 270 MAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 328

Query: 429 S-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN 487
           +   E++L      L  LS   +N    A++EAG    L   L  PS  ++   LWT+ N
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386

Query: 488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL 547
           +    D  T+     G +  L+ LL  +  N +    + I+SN+ C N +    V   G 
Sbjct: 387 L---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGG 442

Query: 548 IGPLVNLLQNA--EFDIKEEAAWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADP 603
           I  LV  +  A    DI E A  A+ + +SR          +     +  +  LL     
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502

Query: 604 KIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEI 660
             +     GL   L +  A                 + E   + ++  L    + + 
Sbjct: 503 WPLIKATVGLIRNLALCPANH-------------APLREQGAIPRLVQLLVRAHQDT 546

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  244 bits (623), Expect = 1e-70
 Identities = 66/413 (15%), Positives = 146/413 (35%), Gaps = 26/413 (6%)

Query: 260 SDDNNLQL--EATTQFQKLLS-IESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWAL 316
           +   N+Q   E +   +  +  + +   +  + +  +P   + L  ED   +  +AA  +
Sbjct: 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDED-QVVVNKAAVMV 174

Query: 317 TNIASGTSENTKVVIEHDAVPIFVKLLASPSD-DVREQAVWALGNVAADSSGCRDLVLSE 375
             ++   +    ++     V   V+ + + +D +        L N+ +        +   
Sbjct: 175 HQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL-SHHREGLLAIFKS 233

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP-RPLFDQVRPALPALAQLIHSNDEQV 434
           G  IP L  +      S+L  A TTL NL   +    +  ++   L  +  L++  + + 
Sbjct: 234 GG-IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
           L      L  L+   N +    ++ +G    LV ++   +   L      V  ++     
Sbjct: 293 LAITTDCLQILAYG-NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351

Query: 495 QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL 554
               I+  G +  L   L       + +   W + N++    +Q       GL+G LV L
Sbjct: 352 NKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQL 407

Query: 555 LQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ--CADPKIVTVCLEG 612
           L + + ++   AA  +SN +    +     +   G I+ L   +        I    +  
Sbjct: 408 LGSDDINVVTCAAGILSNLTC-NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466

Query: 613 LENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV 665
           L ++       ++ D+++         V    GL  +  L    ++    K+ 
Sbjct: 467 LRHL-----TSRHQDAEMA-----QNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  214 bits (546), Expect = 5e-60
 Identities = 70/438 (15%), Positives = 135/438 (30%), Gaps = 34/438 (7%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
               +V  + +      L  T++  K+LS+ S     ++E+G +      L      +L 
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLV 377

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
               W L N++      TK       +   V+LL S   +V   A   L N+  ++   +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 370 DLVLSEGALIPLLAQL-NEHTELSMLRIATTTLSNLCRGKPRP----LFDQVRPALPALA 424
            +V   G +  L+  +        +   A   L +L              ++   LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 425 QLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484
           +L+H      L  A   L              + E G   RLV+LL              
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553

Query: 485 VGNIVMGDDFQT---------------------QCIINHGAVPCLLALLIHNHKNSIKKE 523
                  +  +                        I     +P  + LL ++   +I++ 
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENIQRV 612

Query: 524 VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIK 583
            + ++  +A  ++E  +A+   G   PL  LL +    +   AA  +   S     D  K
Sbjct: 613 AAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 671

Query: 584 YLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEA 643
            L  E     L         +   + L+       +G  + +          + Q     
Sbjct: 672 RLSVE-LTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGM 730

Query: 644 EGLEKIENLQSHDNNEIH 661
           + + + E    H   +  
Sbjct: 731 DPMMEHEMAGHHPGPDYP 748

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  244 bits (624), Expect = 7e-77
 Identities = 78/198 (39%), Positives = 112/198 (56%), Gaps = 3/198 (1%)

Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478
            LP + Q ++S D+Q L  A   L  ++    N++IQAVI+AG    LV+LL  P+  +L
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQ 538
             ALW + NI  G + Q Q +I+ GA+P L+ LL  +    I +E  W +SNIA G  EQ
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 130

Query: 539 IQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL 598
           IQAVIDAG +  LV LL +    I +EA WA+SN +S G ++Q + +   G ++ L  L 
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQ 189

Query: 599 QCADPKIVTVCLEGLENI 616
              + KI     E LE +
Sbjct: 190 SHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  169 bits (431), Expect = 5e-49
 Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 4/205 (1%)

Query: 285 EEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA 344
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VI+  A+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 345 SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404
           SP++ + ++A+WAL N+A+  +     V+  GAL  L+  L       +L+ A   LSN+
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 123

Query: 405 CRGKPRPLFDQVRP-ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC 463
             G    +   +   ALPAL QL+ S +EQ+L +A WAL  ++    N++ QAV EAG  
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGAL 182

Query: 464 GRLVELLGHPSPSVLTPALWTVGNI 488
            +L +L  H +  +   A   +  +
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQ 309
            LP +V  + S +  +  EA      + S  +  I+ VI++G +P  V+ L+     Q+ 
Sbjct: 97  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQIL 155

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAA 363
            +A WAL+NIASG +E  + V E  A+    +L +  ++ ++++A  AL  + +
Sbjct: 156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  226 bits (578), Expect = 3e-68
 Identities = 53/336 (15%), Positives = 104/336 (30%), Gaps = 33/336 (9%)

Query: 267 LEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN 326
                   +        +++              M          A   L  + S   E+
Sbjct: 17  RAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDEEH 65

Query: 327 TKVVIEHDAVPIFVKLLASPSD-----------DVREQAVWALGNVAADSSGCRDLVLSE 375
              + E   +    +LL    +            +R  A  AL N+       +  + S 
Sbjct: 66  RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVR--PALPALAQL-IHSNDE 432
              +  L    +     + ++  + L NL           +R   ++ AL +  +    E
Sbjct: 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 185

Query: 433 QVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTP-------ALWTV 485
             L     AL+ LS     +K       G    LV  L + S +            L  V
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245

Query: 486 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA 545
            +++  ++   Q +  +  +  LL  L  +H  +I       + N++  N +  +A+ D 
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304

Query: 546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQ 581
           G +  L NL+ +    I   +A A+ N  +      
Sbjct: 305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  187 bits (477), Expect = 8e-54
 Identities = 57/318 (17%), Positives = 111/318 (34%), Gaps = 24/318 (7%)

Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL---------- 300
           +      + +   +    A     KL S +      + E G +    E L          
Sbjct: 34  MDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT 92

Query: 301 MREDYPQLQFQAAWALTNIASGTSENTKVVIEHD-AVPIFVKLLASPSDDVREQAVWALG 359
                  L+  A  ALTN+  G   N   +      +   V  L S S+D+++     L 
Sbjct: 93  NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152

Query: 360 NVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP--RPLFDQV 416
           N++  +    +  +   G++  L+    E  + S L+   + L NL       +     V
Sbjct: 153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212

Query: 417 RPALPALAQLI----HSNDEQVLTDACWALFGLSG--DRNNDKIQAVIEAGVCGRLVELL 470
             AL  L   +     +N   ++      L  +S     N D  Q + E      L++ L
Sbjct: 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 272

Query: 471 GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN 530
              S ++++ A  T+ N+   +    + + + GAV  L  L+ H+    I    +  + N
Sbjct: 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRN 331

Query: 531 IACGN--REQIQAVIDAG 546
           +      + +   ++  G
Sbjct: 332 LMANRPAKYKDANIMSPG 349

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  124 bits (313), Expect = 2e-31
 Identities = 43/261 (16%), Positives = 93/261 (35%), Gaps = 16/261 (6%)

Query: 260 SDDNNLQLEATTQFQKLLSIESMPIEEVIES-GVVPRFVEFLMREDYPQLQFQAAWALTN 318
                L+  A      L   +      +    G +   V   ++ +   LQ   A  L N
Sbjct: 95  HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA-QLKSESEDLQQVIASVLRN 153

Query: 319 IASGTSENTKVVI-EHDAVPIFVKLLASPSD-DVREQAVWALGNVAADSSG-CRDLVLSE 375
           ++     N+K  + E  +V   ++           +  + AL N++A  +    D+   +
Sbjct: 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 213

Query: 376 GA---LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVR----PALPALAQLIH 428
           GA   L+  L   ++   L+++      L N+          +        L  L Q + 
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273

Query: 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488
           S+   ++++AC  L+ LS  RN    +A+ + G    L  L+      +   +   + N+
Sbjct: 274 SHSLTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332

Query: 489 VMGDDFQTQ---CIINHGAVP 506
           +     + +    +    ++P
Sbjct: 333 MANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  111 bits (279), Expect = 7e-27
 Identities = 48/226 (21%), Positives = 84/226 (37%), Gaps = 14/226 (6%)

Query: 250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVI-ESGVVPRFVEFLMREDYPQL 308
            +  +VA + S+  +LQ    +  + L     +  ++ + E G V   +E  +       
Sbjct: 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 187

Query: 309 QFQAAWALTNIASGTSEN-TKVVIEHDAVPIFVKLLASPSDD----VREQAVWALGNV-- 361
                 AL N+++  +EN   +     A+   V  L   S      + E     L NV  
Sbjct: 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247

Query: 362 -AADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP--RPLFDQVRP 418
             A +   R ++     L  LL  L  H+  +++  A  TL NL    P  +     +  
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSL-TIVSNACGTLWNLSARNPKDQEALWDMG- 305

Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNND-KIQAVIEAGVC 463
           A+  L  LIHS  + +   +  AL  L  +R    K   ++  G  
Sbjct: 306 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 93.4 bits (232), Expect = 1e-20
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 25/229 (10%)

Query: 450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL 509
                          +    +  P    + PA+  +  +   ++     +   G +  + 
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIA 79

Query: 510 ALL----------IHNHKNSIKKEVSWIISNIACGNREQIQAVI-DAGLIGPLVNLLQNA 558
            LL            ++  ++++     ++N+  G+      +    G +  LV  L++ 
Sbjct: 80  ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 139

Query: 559 EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL-QCADPKIVTVCLEGLENIL 617
             D+++  A  + N S R   +  K L   G +K L +   +      +   L  L N+ 
Sbjct: 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199

Query: 618 KVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVK 666
                 K            A +      L  +    ++ +       ++
Sbjct: 200 AHCTENK------------ADICAVDGALAFLVGTLTYRSQTNTLAIIE 236

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  199 bits (508), Expect = 5e-57
 Identities = 60/298 (20%), Positives = 107/298 (35%), Gaps = 25/298 (8%)

Query: 301 MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-----------PSDD 349
           M          A   L  + S   E+   + E   +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 350 VREQAVWALGNVA-ADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408
           +R  A  AL N+   D +    L   +G +  L+AQL   +E  + ++  + L NL    
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSWRA 274

Query: 409 PRPLFDQVR--PALPALAQL-IHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR 465
                  +R   ++ AL +  +    E  L     AL+ LS     +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 466 LVELLGHPSPSVLTP-------ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN 518
           LV  L + S +            L  V +++  ++   Q +  +  +  LL  L  +H  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSL 393

Query: 519 SIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR 576
           +I       + N++  N +  +A+ D G +  L NL+ +    I   +A A+ N  + 
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  187 bits (477), Expect = 9e-53
 Identities = 77/438 (17%), Positives = 159/438 (36%), Gaps = 65/438 (14%)

Query: 236 SALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP--IEEVIESGVV 293
           S +  + +L TK+E++  +++ + + D   + + +   + LL++ S       + +SG +
Sbjct: 19  SHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQSGCL 72

Query: 294 PRFVEFLMRED-----------YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKL 342
           P  ++ L   D             + + +A+ AL NI     ++ +   E   + +  ++
Sbjct: 73  PLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQI 132

Query: 343 ------------------------LASPSDDVREQAVWALGNVAADSSGCRDLVLSEGAL 378
                                   + +P +     AV  L  ++ D    R  +   G L
Sbjct: 133 RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGL 191

Query: 379 IPLLAQL----------NEHTELSMLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQL 426
             +   L          N+H  +++ R A   L+NL  G    +     ++  + AL   
Sbjct: 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251

Query: 427 IHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS-PSVLTPALWTV 485
           + S  E +       L  LS   + +  + + E G    L+E        S L   L  +
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311

Query: 486 GNI-VMGDDFQTQCIINHGAVPCLLALLIHNHKNS---IKKEVSWIISNI---ACGNREQ 538
            N+     + +       GA+  L+  L +  + +   I +    I+ N+      N + 
Sbjct: 312 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371

Query: 539 IQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLL 598
            Q + +   +  L+  L++    I   A   + N S+R   DQ + L   G +  L +L+
Sbjct: 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLI 430

Query: 599 QCADPKIVTVCLEGLENI 616
                 I       L N+
Sbjct: 431 HSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  179 bits (456), Expect = 9e-50
 Identities = 57/311 (18%), Positives = 109/311 (35%), Gaps = 24/311 (7%)

Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL---------- 300
           +      + +   +    A     KL S +      + E G +    E L          
Sbjct: 150 MDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT 208

Query: 301 MREDYPQLQFQAAWALTNIASGTSENTKVVI-EHDAVPIFVKLLASPSDDVREQAVWALG 359
                  L+  A  ALTN+  G   N   +      +   V  L S S+D+++     L 
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268

Query: 360 NVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL---CRGKPRPLFDQ 415
           N++  +    +  +   G++  L+    E  + S L+   + L NL   C      +   
Sbjct: 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC-A 327

Query: 416 VRPALPALAQLI----HSNDEQVLTDACWALFGLSG--DRNNDKIQAVIEAGVCGRLVEL 469
           V  AL  L   +     +N   ++      L  +S     N D  Q + E      L++ 
Sbjct: 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387

Query: 470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529
           L   S ++++ A  T+ N+   +    + + + GAV  L  L+ H+    I    +  + 
Sbjct: 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALR 446

Query: 530 NIACGNREQIQ 540
           N+      + +
Sbjct: 447 NLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  132 bits (332), Expect = 4e-33
 Identities = 60/386 (15%), Positives = 128/386 (33%), Gaps = 54/386 (13%)

Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL------------ASPSDDVREQAVW 356
           +   +  L  + S + ++   + +   +P+ ++LL            +  S + R +A  
Sbjct: 46  KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104

Query: 357 ALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV 416
           AL N+             E  ++ LL Q+  + E                       +  
Sbjct: 105 ALHNIIHSQPD-DKRGRREIRVLHLLEQIRAYCE-----------------TCWEWQEAH 146

Query: 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL------ 470
            P +      + +  E  +  A   L  LS D  +    A+ E G    + ELL      
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH--RHAMNELGGLQAIAELLQVDCEM 204

Query: 471 -----GHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKNSIKKEV 524
                 H S ++   A   + N+  GD      +    G +  L+A L    ++ +++ +
Sbjct: 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED-LQQVI 263

Query: 525 SWIISNIACGNREQIQAVI-DAGLIGPLVNLLQNAEFD-IKEEAAWAISNASSRGTHDQI 582
           + ++ N++       +  + + G +  L+      + +   +    A+ N S+  T ++ 
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323

Query: 583 KYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEE 642
                +G +  L   L           +E    IL      +N  S I       Q++ E
Sbjct: 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL------RNVSSLIATNEDHRQILRE 377

Query: 643 AEGLEKIENLQSHDNNEIHEKSVKIL 668
              L+ +       +  I   +   L
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTL 403

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  189 bits (480), Expect = 3e-53
 Identities = 65/448 (14%), Positives = 131/448 (29%), Gaps = 71/448 (15%)

Query: 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352
           +P+ V++L  +D  + Q   A+ + +         + V +   +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412
            A  AL N+   S+  +     +  +   ++ L       + +  T  L NL        
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 413 FDQVRPALPALAQLI----------------HSNDEQVLTDACWALFGLSGDRNNDKIQA 456
            + +  ALP LA  +                   D +V  +A   L  LS      +   
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG-RQTM 180

Query: 457 VIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH 516
              +G+   L+  + +   +           + +  +   +           L     N 
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 517 KNSIKKEVSWIISNIACGNREQIQA-------------VIDAGLIGPLVNLLQNAEFDIK 563
                    +   +    N                   +  +  I   +NL+  ++ D  
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 564 EEAAWA-----ISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENI-- 616
            EA         ++     +       + E  +  +  LLQ  +  +V      L N+  
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360

Query: 617 -------------------LKVGEAEKNTDSDI------------GDINQFAQLVEEAEG 645
                              L       +   DI                Q A+    +  
Sbjct: 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420

Query: 646 LEKIENL-QSHDNNEIHEKSVKILETYW 672
           L  I NL +S  + +  E +  +L   W
Sbjct: 421 LNNIINLCRSSASPKAAEAARLLLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  106 bits (266), Expect = 1e-24
 Identities = 36/308 (11%), Positives = 88/308 (28%), Gaps = 27/308 (8%)

Query: 290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL------ 343
           SG              P++ F A   L N++S  +    +      +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 344 ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSN 403
           +   D   E  +  L N++            +       A   + +       +   ++N
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 404 LCRG---------KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKI 454
                        K              L  +  S  +  L     AL  L+  +     
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 455 Q----AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 510
                  ++     ++  LL   +  V+      + N+          ++ +   P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 511 LLIHNHKNSIKKE-----VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD-IKE 564
           LL  +  N+   E       + + N+     +  +    + ++  ++NL +++      E
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 565 EAAWAISN 572
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 93.0 bits (230), Expect = 4e-20
 Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 26/231 (11%)

Query: 418 PALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSV 477
             +P   Q + S DE+      + +        + K Q V + G   +LV+LL  P+ +V
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAK-QQVYQLGGICKLVDLLRSPNQNV 60

Query: 478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE 537
              A   + N+V               +   ++LL       I+K+++ ++ N++  +  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-- 118

Query: 538 QIQAVIDAGLIGPLVNLL----------------QNAEFDIKEEAAWAISNASSRGTHDQ 581
           +++  + A  +  L + +                +  + ++   A   + N SS     +
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS-ADAGR 177

Query: 582 IKYLVTEGCIKPLCDLLQCA------DPKIVTVCLEGLENILKVGEAEKNT 626
                  G I  L   +Q        D K V  C+  L N+    +AE  T
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 86.4 bits (213), Expect = 5e-18
 Identities = 36/304 (11%), Positives = 84/304 (27%), Gaps = 19/304 (6%)

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVR-PALPALAQLIHSNDEQV 434
           G  IP   Q     +     I    + + C           +   +  L  L+ S ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
              A  AL  L      +K++   + G+   +  L    +  +       + N+   D+ 
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 495 QTQCIINHGAVPCLLALLI---------------HNHKNSIKKEVSWIISNIACGNREQI 539
           + +  +   A+P L   +I                     +    +  + N++  +  + 
Sbjct: 121 KEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ 599
                +GLI  L+  +QN     + +     +                    + L    +
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 600 CADPKI-VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNN 658
            A  +   T C     + +     +     +  +      L         +  +     +
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 659 EIHE 662
              E
Sbjct: 299 ATLE 302

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 74.1 bits (181), Expect = 4e-14
 Identities = 37/300 (12%), Positives = 89/300 (29%), Gaps = 32/300 (10%)

Query: 260 SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNI 319
             D  +   AT   + L S ++        SG++   +   ++      +         +
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMA-YVQNCVAASRCDDKSVENCM 212

Query: 320 ASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA---------------AD 364
               + + ++  E       +    + +    + +     N +                 
Sbjct: 213 CVLHNLSYRLDAEVPTRYRQL-EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271

Query: 365 SSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP------RPLFDQVRP 418
           +      +    A+   L  + +  + + L      L NL   K         L      
Sbjct: 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK 331

Query: 419 ALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL------GH 472
            LP +A+L+ S +  V+      L  +S          V+   V   +  LL        
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL---HRVMGNQVFPEVTRLLTSHTGNTS 388

Query: 473 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532
            S  +L+ A +TV N++       +   +   +  ++ L   +      +    ++S++ 
Sbjct: 389 NSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 68.7 bits (167), Expect = 2e-12
 Identities = 35/277 (12%), Positives = 81/277 (29%), Gaps = 26/277 (9%)

Query: 145 LKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKD 204
           L +    C  +      S+E  +    +          +     +   +    E S+   
Sbjct: 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC 249

Query: 205 DLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNN 264
             N + + +N   +  + +     +   +L              + +   +  +     +
Sbjct: 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWL-----------YHSDAIRTYLNLMGKSKKD 298

Query: 265 LQLEATTQFQKLLSI------ESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTN 318
             LEA     + L+         M     ++   +P+    L++     +    A  L+N
Sbjct: 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR-LLQSGNSDVVRSGASLLSN 357

Query: 319 IASGTSENTKVVIEHDAVPIFVKLLAS------PSDDVREQAVWALGNVAADSSGCRDLV 372
           ++         V+ +   P   +LL S       S+D+   A + + N+ A         
Sbjct: 358 MSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQY 415

Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409
            S   L  ++              A   LS++   K 
Sbjct: 416 FSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  187 bits (476), Expect = 1e-51
 Identities = 73/464 (15%), Positives = 149/464 (32%), Gaps = 66/464 (14%)

Query: 265 LQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS 324
            Q E  +        +  P         +P  +  L       ++  AA  L ++     
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRND 80

Query: 325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA-ADSSGCRDLVLSEGALIPLLA 383
           +    V +   +P+ V LL  P  +V   A  AL N++       +  + +   +  L+ 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 384 QLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI---------------- 427
            L +  ++ +  + T TL NL         + V  AL AL   +                
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199

Query: 428 --HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH------------- 472
             H   E VLT+    L  +S +R+  + +     G+   L+ ++               
Sbjct: 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVE 259

Query: 473 ------------------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514
                              +      A     N         + +     V   ++LL  
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319

Query: 515 NHKNSIKKEVSWIISNIACGNR---EQIQAVI-DAGLIGPLVNLLQNAEFDIKEEAAWAI 570
           +   +I +  +  I N+  G       I++ +     +  + +LL N    + + A+ A+
Sbjct: 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL 379

Query: 571 SNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDI 630
            N +      + K L+ +  I  L   L            E  + ++ +          I
Sbjct: 380 RNLAV---DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE--DTVISILNTINEV---I 431

Query: 631 GDINQFAQLVEEAEGLEKIENLQSHDNNE--IHEKSVKILETYW 672
            +  + A+ + E +G+EK+  +    N        +  +L+T W
Sbjct: 432 AENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  102 bits (255), Expect = 6e-23
 Identities = 58/398 (14%), Positives = 120/398 (30%), Gaps = 69/398 (17%)

Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPI-EEVIESGVVPRFVEFLMREDYPQLQ 309
           +P++V  +      + L A    + +           +     VP  V  L +     L 
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP------------------SDDVR 351
                 L N++S   ++ K+ I   A+      +  P                   + V 
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 352 EQAVWALGNVAADSSGCRDLVLSEGALIPLLAQL------NEHTELSMLRIATTTLSNLC 405
                 L NV+++ S  R  +     L+  L  +       + ++  ++      L NL 
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 406 RGKPRPLFDQVRP--------------------------ALPALAQLI-HSNDEQVLTDA 438
               R +    R                            +     L+  S    +L  +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 439 CWALFGLSGDRNNDKIQ---AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 495
             A+  L   R         A+ +      + +LL +    V+  A   + N+ +    +
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--R 387

Query: 496 TQCIINHGAVPCLLALLIHNHKNSIKK-------EVSWIISNIACGNREQIQAVIDAGLI 548
            + +I   A+P L+  L    +NS           +   I+ +   N E  + + +   I
Sbjct: 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGI 447

Query: 549 GPLVNLLQNAEFDIKE--EAAWAISN-ASSRGTHDQIK 583
             LV + ++     KE   AA  +      +     ++
Sbjct: 448 EKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE 485

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 81.5 bits (200), Expect = 3e-16
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 16/222 (7%)

Query: 243 NLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMR 302
           N    L  L   V          Q  A        +  +   E + +  VV  ++  L  
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319

Query: 303 EDYPQLQFQAAWALTNIASGT----SENTKVVIEHDAVPIFVKLLASPSDDVREQAVWAL 358
              P +   +A A+ N+ +G           + +  A+     LL +  + V + A  AL
Sbjct: 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL 379

Query: 359 GNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRI-------ATTTLSNLCRGKPRP 411
            N+A D+      ++ + A+  L+  L    + S              T++ +       
Sbjct: 380 RNLAVDARNKE--LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437

Query: 412 LFDQVRP-ALPALAQLIHSND--EQVLTDACWALFGLSGDRN 450
                    +  L  +  S +  E+ +  A   L  + G + 
Sbjct: 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  139 bits (350), Expect = 8e-37
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 6/191 (3%)

Query: 335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSML 394
              +  + L + +  +R +A   +G  + + +  ++ VL  GAL  LL  L+     ++ 
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142

Query: 395 RIATTTLSNLCRGKPRPLFDQVR--PALPALAQLIHSNDEQVLTDACWALFGLSGDRNND 452
             A   +S L R +      Q         L + +    +++   + + L  L    + +
Sbjct: 143 VKALFAISCLVREQE-AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPE 200

Query: 453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
               +   G+  +LV L+           L  + ++V       +          L  LL
Sbjct: 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE--PELGLEELL 258

Query: 513 IHNHKNSIKKE 523
            H  +   + E
Sbjct: 259 RHRCQLLQQHE 269

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  119 bits (299), Expect = 5e-30
 Identities = 41/257 (15%), Positives = 93/257 (36%), Gaps = 10/257 (3%)

Query: 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPS 476
           +P  P   +   + D+Q    A   L  L  + +N        +G+   +   L   +  
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAGAAG 97

Query: 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR 536
           +   A   +G          + ++  GA+  LL LL  +  ++++ +  + IS +     
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 537 EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCD 596
             +   +       L+  +Q     +K ++A+ + N    G  +    L + G ++ L  
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVA 216

Query: 597 LLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD 656
           L++          L  L +++   +  +             +L+       + + LQ H+
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVT--DFPQGVRECREPELGLEELLR-----HRCQLLQQHE 269

Query: 657 NN-EIHEKSVKILETYW 672
              E  E   K+L+T +
Sbjct: 270 EYQEELEFCEKLLQTCF 286

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 93.9 bits (233), Expect = 2e-21
 Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 2/175 (1%)

Query: 260 SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNI 319
           +    L+  A           +   E+V+  G + + +  L R+    ++ +A +A++ +
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 152

Query: 320 ASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALI 379
                      +  D   + ++ +      ++ ++ + L N+       +  + S G  +
Sbjct: 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM-V 211

Query: 380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV 434
             L  L               L +L    P+ +  + R     L +L+    + +
Sbjct: 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-RECREPELGLEELLRHRCQLL 265

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 1/120 (0%)

Query: 213 VNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQ 272
             L R++    R + L + S L       +    +L+   +++  +      L++++   
Sbjct: 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFL 190

Query: 273 FQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE 332
            Q LL         +   G+V + V  +  E           AL ++ +   +  +   E
Sbjct: 191 LQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVTDFPQGVRECRE 249

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  144 bits (364), Expect = 4e-36
 Identities = 58/444 (13%), Positives = 140/444 (31%), Gaps = 55/444 (12%)

Query: 264 NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGT 323
           +    A+    ++         +   +  +  +++  +     + + +   A+T + +G 
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGP 278

Query: 324 SE-NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLL 382
            +   +VV     + + + +  +  +  +  A   L   ++        +  +G  + +L
Sbjct: 279 LDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VDIL 335

Query: 383 AQLNEHTELSMLRIATTTLSNLC-----RGKPRPLFDQVRPALPALAQ---LIHSNDEQV 434
            +L       +   A   L  L          RP  D     L    +   +    D+ +
Sbjct: 336 KRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDI 395

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
              A   L  L+ D    K + + +      L++L    + S L   + T  N+    + 
Sbjct: 396 RRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 495 QT--------------------------------QCIINHGAVPCLLALLIHNHKNSIKK 522
           Q                                   + N G    L AL      ++ ++
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQE 513

Query: 523 EVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN-ASSRGTHDQ 581
            ++ +++ + CG +E    V+  G +  L+ +        K  A  A++    +      
Sbjct: 514 LIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

Query: 582 IKYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLV 640
                +   I+PL +LLQ           L  L N+  + E+ +        +++    +
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL 632

Query: 641 EEAEG------LEKIENLQSHDNN 658
            E          + + NL   ++ 
Sbjct: 633 MEDHLYLTRAAAQCLCNLVMSEDV 656

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  134 bits (337), Expect = 8e-33
 Identities = 64/464 (13%), Positives = 126/464 (27%), Gaps = 101/464 (21%)

Query: 260 SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNI 319
             D +++  A      L        + + +   +   ++     +     +       N+
Sbjct: 390 GKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNL 448

Query: 320 ASGT--------------------------------SENTKVVIEHDAVPIFVKLLASPS 347
            +                                  ++   V+           L  + S
Sbjct: 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES 508

Query: 348 DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG 407
            + +E     L  V       R  V+ EG +  LL    E TE    R AT  L+ +   
Sbjct: 509 HNSQELIARVLNAVCGLKE-LRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGIT 566

Query: 408 K-PRPLFDQVRP--ALPALAQLIHSNDEQVLT-DACWALFGLSGDRNNDKIQAVIEAGVC 463
             P   F   R    +  L  L+  +   +   ++  AL  L+   N    Q +I+    
Sbjct: 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGV 625

Query: 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKE 523
            ++   L      +   A   + N+VM +D       N+  V                  
Sbjct: 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK----------------- 668

Query: 524 VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIK 583
                                      L  L ++ + +     A A++  +S       K
Sbjct: 669 --------------------------FLALLCEDEDEETATACAGALAIITSVSVKCCEK 702

Query: 584 YLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA-----------------EKNT 626
            L     +  L  L+    P +    +  + N++  GE                   +  
Sbjct: 703 ILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762

Query: 627 DSDIGDINQFAQ-LVEEAEGLEKIENLQSHDNNEIHEKSVKILE 669
           D       + A   +  AE    IE   + +  ++  ++ KI E
Sbjct: 763 DDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFAENSKISE 806

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 91.1 bits (225), Expect = 4e-19
 Identities = 38/252 (15%), Positives = 84/252 (33%), Gaps = 5/252 (1%)

Query: 213 VNLKRESFIKKRREGLQSQSYLPSALAPSINLHT--KLEILPMMVAGVWSDDNNLQ-LEA 269
           + +  E   K +R   Q+ + +   + P ++      L+++  ++  +  D   L+  E+
Sbjct: 542 LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES 601

Query: 270 TTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV 329
                 L S+     + +I+   V +     + ED+  L   AA  L N+          
Sbjct: 602 LMALTNLASMNESVRQRIIKEQGVSKIEY-YLMEDHLYLTRAAAQCLCNLVMSEDVIKMF 660

Query: 330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT 389
              +D V     L     ++       AL  + + S  C + +L+  + + +L  L  + 
Sbjct: 661 EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720

Query: 390 ELSMLRIATTTLSNLCRGKPRPLFDQVRP-ALPALAQLIHSNDEQVLTDACWALFGLSGD 448
             ++       + N+                +  L+ L    D+        A   L+  
Sbjct: 721 SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780

Query: 449 RNNDKIQAVIEA 460
                I+    A
Sbjct: 781 ERYRIIERSDNA 792

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  125 bits (315), Expect = 1e-32
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 22/195 (11%)

Query: 293 VPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVR 351
           + R V  L  +   P     AA  + +     SE  K V +   +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 352 EQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP 411
                AL N+  + +  +  V     +  LL  L +  +L   +  T  L NL       
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 412 LFDQVRPALPALAQLI----------------HSNDEQVLTDACWALFGLSGDRNNDKIQ 455
               +  AL  L + I                   D  +  +    L  +S     D  +
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS-SAGADGRK 187

Query: 456 AVIEAGVCGRLVELL 470
           A+     C  L++ L
Sbjct: 188 AMRR---CDGLIDSL 199

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 92.3 bits (229), Expect = 3e-21
 Identities = 29/208 (13%), Positives = 72/208 (34%), Gaps = 21/208 (10%)

Query: 415 QVRPALPALAQLIHSND--EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH 472
            +   L     ++ ++      ++ A   +      + ++  + V +     +L++LL  
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHEC-FQKSEARKRVNQLRGILKLLQLLKV 63

Query: 473 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532
            +  V       + N+V  D+     +     VP LL +L        KK+++ ++ N++
Sbjct: 64  QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123

Query: 533 CGNREQIQAVIDAGLIGPLVNLL----------------QNAEFDIKEEAAWAISNASSR 576
               ++++ ++    +  L   +                   +FDI       + N SS 
Sbjct: 124 SN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181

Query: 577 GTHDQIKYLVTEGCIKPLCDLLQCADPK 604
           G   +      +G I  L   ++     
Sbjct: 182 GADGRKAMRRCDGLIDSLVHYVRGTIAD 209

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 58.8 bits (142), Expect = 6e-10
 Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 26/178 (14%)

Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPI-EEVIESGVVPRFVEFLMREDYPQLQ 309
           +  ++  +   + ++Q       +  L  E      EV E   VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASP----------------SDDVREQ 353
            Q    L N++S   +  K ++  +A+    + +  P                  D+   
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 354 AVWALGNVAADSSGCRDLVLSEGALIPLLAQL------NEHTELSMLRIATTTLSNLC 405
               L N+++  +  R  +     LI  L         +   +          L NL 
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 534 GNREQIQAVIDAGLIGPLVNLLQ--NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCI 591
           G+   ++  ++       V++L+  +        AA  I +       +  K +     I
Sbjct: 1   GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECF-QKSEARKRVNQLRGI 54

Query: 592 KPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIEN 651
             L  LL+  +  +       L N++      K   +++  + +  Q++++   LE  + 
Sbjct: 55  LKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ 114

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 84.8 bits (209), Expect = 2e-18
 Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 27/242 (11%)

Query: 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQL 308
            +L  ++  +  D   +   A +    +        E ++      +    L + +   L
Sbjct: 32  SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPL 86

Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
             + A A   +A    E  K +I     P+         +  +    +AL  +A  +   
Sbjct: 87  TQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPML 141

Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH 428
              ++ +   + +L+  N   +L+ L      +  +           V P LP +  L+H
Sbjct: 142 MASIVRD--FMSMLSSKNREDKLTALN----FIEAMGENSF----KYVNPFLPRIINLLH 191

Query: 429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI 488
             DE V   A  AL  L+    NDK++ V+      + +E L   S  V       +  +
Sbjct: 192 DGDEIVRASAVEALVHLA--TLNDKLRKVVI-----KRLEELNDTSSLVNKTVKEGISRL 244

Query: 489 VM 490
           ++
Sbjct: 245 LL 246

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 26/202 (12%), Positives = 70/202 (34%), Gaps = 21/202 (10%)

Query: 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVR 351
           V+ + +E L  +D   +   A   +  IA    +  + +++     +F  L  S +  + 
Sbjct: 33  VLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 352 EQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP 411
           ++   A G +A +            ++IP+L       +       +  L  + +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG 471
               +   +     ++ S + +    A   +  + G+ +   +   +       ++ LL 
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAM-GENSFKYVNPFLPR-----IINLLH 191

Query: 472 HPSPSVLTPALWTVGNIVMGDD 493
                V   A+  + ++   +D
Sbjct: 192 DGDEIVRASAVEALVHLATLND 213

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 73.6 bits (181), Expect = 4e-15
 Identities = 44/248 (17%), Positives = 79/248 (31%), Gaps = 57/248 (22%)

Query: 334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSM 393
           + V +++K L   S  VR  A +ALG +  + +            +  L +  +  +  +
Sbjct: 19  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA------------VEPLIKALKDEDAWV 66

Query: 394 LRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK 453
            R A   L  +  G  R        A+  L + +   D  V   A  AL G  GD     
Sbjct: 67  RRAAADALGQI--GDER--------AVEPLIKALKDEDGWVRQSAAVAL-GQIGDE---- 111

Query: 454 IQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI 513
               +E      L++ L      V   A + +G I  GD+          AV  L+  L 
Sbjct: 112 --RAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKALK 153

Query: 514 HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA 573
                 +++  +  +  I               +   +  L +      ++ A   +   
Sbjct: 154 DEDGW-VRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETH 201

Query: 574 SSRGTHDQ 581
            S   H  
Sbjct: 202 KSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 43/246 (17%), Positives = 73/246 (29%), Gaps = 58/246 (23%)

Query: 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352
           V  +++ L  +    ++  AA+AL  I               AV   +K L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 68

Query: 353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412
            A  ALG +  + +            +  L +  +  +  + + A   L  +  G  R  
Sbjct: 69  AAADALGQIGDERA------------VEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 112

Query: 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH 472
                 A+  L + +   D  V   A +AL G  GD         +E      L++ L  
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFAL-GEIGDE------RAVEP-----LIKALKD 154

Query: 473 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532
               V   A   +G I  G +              +  L         +K     +    
Sbjct: 155 EDGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGTG-FARKVAVNYLETHK 202

Query: 533 CGNREQ 538
             N   
Sbjct: 203 SFNHHH 208

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 72.9 bits (179), Expect = 3e-14
 Identities = 39/327 (11%), Positives = 88/327 (26%), Gaps = 70/327 (21%)

Query: 289 ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSD 348
           +          L   +    +  +A  L                 DAV + ++  +  + 
Sbjct: 21  KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNY 68

Query: 349 DVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK 408
             R+   + LG +             +     L           +   A  + +  C+  
Sbjct: 69  IRRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN 122

Query: 409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE 468
           P          +             V     +A+  +  D+      A I       L+ 
Sbjct: 123 PI----YSPKIVEQSQITAFDKSTNVRRATAFAI-SVINDK------ATIPL-----LIN 166

Query: 469 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII 528
           LL  P+  V   A + +      +              C + +L   ++  ++ E    +
Sbjct: 167 LLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEE-VRIEAIIGL 216

Query: 529 SNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTE 588
           S              D  ++  L + L+     + ++   A               L  +
Sbjct: 217 SYRK-----------DKRVLSVLCDELKKN--TVYDDIIEAAGE------------LGDK 251

Query: 589 GCIKPLCDLLQ-CADPKIVTVCLEGLE 614
             +  L  +L    D +I+T  ++ L+
Sbjct: 252 TLLPVLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 30/231 (12%), Positives = 61/231 (26%), Gaps = 50/231 (21%)

Query: 282 MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK 341
           + I +  E  V        + +    ++  A  +           +        V     
Sbjct: 81  IKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQI 135

Query: 342 LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTL 401
                S +VR    +A+  +   ++            IPLL  L +     +   A   +
Sbjct: 136 TAFDKSTNVRRATAFAISVINDKAT------------IPLLINLLKDPNGDVRNWAAFAI 183

Query: 402 SNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG 461
           +                      +++   +E+V  +A   L      R       V+   
Sbjct: 184 NINKYDNSD--------IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR-------VLSV- 227

Query: 462 VCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
               L + L     +V    +   G +  GD            +P L  +L
Sbjct: 228 ----LCDELKK--NTVYDDIIEAAGEL--GDK---------TLLPVLDTML 261

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 35/290 (12%), Positives = 74/290 (25%), Gaps = 68/290 (23%)

Query: 349 DVREQAVWALGNVAADSSGCRDLVL----------------------SEGALIPLLAQLN 386
             + +A    G          D +                        + A + L  +  
Sbjct: 5   YQKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDA-VRLAIEFC 63

Query: 387 EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446
                    I    L  +     +   D V   L      ++     V   A  +     
Sbjct: 64  SDKNYIRRDIGAFILGQI--KICKKCEDNVFNIL--NNMALNDKSACVRATAIEST-AQR 118

Query: 447 GDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVP 506
             +N      ++E              S +V     + +  I   D            +P
Sbjct: 119 CKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAISVI--NDK---------ATIP 162

Query: 507 CLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA 566
            L+ LL   + + ++   ++ I+     N +              V +LQ+   +++ EA
Sbjct: 163 LLINLLKDPNGD-VRNWAAFAININKYDNSDIRDC---------FVEMLQDKNEEVRIEA 212

Query: 567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENI 616
              +S                +  +  LCD L+     +    +E    +
Sbjct: 213 IIGLSY------------RKDKRVLSVLCDELK--KNTVYDDIIEAAGEL 248

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 42/260 (16%), Positives = 80/260 (30%), Gaps = 68/260 (26%)

Query: 311 QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD 370
           + +    +               + V +++K L   S  VR  A +ALG +  + +    
Sbjct: 2   RGSHHHHHHTDP-----------EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA---- 46

Query: 371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSN 430
                   +  L +  +  +  + R A   L  +  G  R        A+  L + +   
Sbjct: 47  --------VEPLIKALKDEDAWVRRAAADALGQI--GDER--------AVEPLIKALKDE 88

Query: 431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVM 490
           D  V   A  AL G  GD         +E      L++ L      V   A + +G I  
Sbjct: 89  DGWVRQSAAVAL-GQIGDE------RAVEP-----LIKALKDEDWFVRIAAAFALGEI-- 134

Query: 491 GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGP 550
           GD+          AV  L+  L       +++  +  +  I               +   
Sbjct: 135 GDE---------RAVEPLIKALKDEDGW-VRQSAADALGEIG-----------GERVRAA 173

Query: 551 LVNLLQNAEFDIKEEAAWAI 570
           +  L +      ++ A   +
Sbjct: 174 MEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 41/220 (18%), Positives = 69/220 (31%), Gaps = 57/220 (25%)

Query: 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352
           V  +++ L  +    ++  AA+AL  I               AV   +K L      VR 
Sbjct: 16  VEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 63

Query: 353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412
            A  ALG +  + +            +  L +  +  +  + + A   L  +  G  R  
Sbjct: 64  AAADALGQIGDERA------------VEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 107

Query: 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH 472
                 A+  L + +   D  V   A +AL G  GD         +E      L++ L  
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFAL-GEIGDE------RAVEP-----LIKALKD 149

Query: 473 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
               V   A   +G I  G +              +  L 
Sbjct: 150 EDGWVRQSAADALGEI--GGE---------RVRAAMEKLA 178

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 12/75 (16%)

Query: 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVR 351
            V   ++ L  ED   ++  AA AL  I                     KL  + +   R
Sbjct: 139 AVEPLIKALKDED-GWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFAR 186

Query: 352 EQAVWALGNVAADSS 366
           + AV  L    +  S
Sbjct: 187 KVAVNYLETHKSLIS 201

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 3e-12
 Identities = 96/692 (13%), Positives = 188/692 (27%), Gaps = 257/692 (37%)

Query: 39  DFRIELNT-KVCLKDVLIVQLRGIEHLGLEGLQEQDVQNFVNELVKLQGSSQLKHLYISG 97
           DF  E    +   KD+L V         ++    +DVQ+    ++      ++ H+ +S 
Sbjct: 8   DF--ETGEHQYQYKDILSVFEDAF----VDNFDCKDVQDMPKSILS---KEEIDHIIMS- 57

Query: 98  SRLALNPEESERPEKLSYDIPSNEIILEDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCA 157
                  +      +L         +L     + +  F+E+ L ++Y K L S       
Sbjct: 58  ------KDAVSGTLRLF------WTLLSKQEEMVQK-FVEEVLRINY-KFLMSPIKTEQ- 102

Query: 158 IKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQVNLKR 217
            + PS+   +  +  + +                          + D  N    + N+ R
Sbjct: 103 -RQPSMMTRMYIEQRDRL--------------------------YND--NQVFAKYNVSR 133

Query: 218 ESFIKKRREGLQSQSYLPSALAPSINLH-------TKL--------EILPMMVAGV-W-- 259
                K R+ L      P   A ++ +        T +        ++   M   + W  
Sbjct: 134 LQPYLKLRQALLELR--P---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 260 -----SDD------NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQL 308
                S +        L  +    +       S  I+  I S +       L  + Y   
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHS-IQAELRRLLKSKPYEN- 245

Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC 368
                  L            +V+                 +V+    W   N+      C
Sbjct: 246 ------CL------------LVL----------------LNVQNAKAWNAFNL-----SC 266

Query: 369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV---RPA-LPALA 424
           + L+ +    +         T +S+   + T    L   + + L  +    RP  LP   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 425 QLIHSNDEQVLTDACWALFGLS----GDR-------NNDKIQAVIEAGVCGRLVELLGHP 473
              +    + L     ++   S              N DK+  +IE+      + +L  P
Sbjct: 323 LTTNP---RRL-----SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-----LNVL-EP 368

Query: 474 S-------------PSVLTPA-----LWT------VGNIVMGDDFQTQCIIN-------- 501
           +             PS   P      +W       V  +V  +      ++         
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTI 426

Query: 502 --HGAVPCLLALLIHN------HKN-----SIKKEVSW-----------IISNIA----- 532
                    L L +        H++     +I K                 S+I      
Sbjct: 427 SIPS---IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 533 CGNREQ-------------IQA-VIDAGL----IGPLVNLLQNAEFDIKEEAAWAISN-- 572
             + E+             ++  +          G ++N LQ     +K    +   N  
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ----QLKFYKPYICDNDP 539

Query: 573 ASSRGTHDQIKYLVT--EGCIK-PLCDLLQCA 601
              R  +  + +L    E  I     DLL+ A
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 84/558 (15%), Positives = 162/558 (29%), Gaps = 183/558 (32%)

Query: 188 HKVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTK 247
           H +  +T + ++  +KD     I  V    ++F+         +  +       +   +K
Sbjct: 5   HHMDFETGEHQYQ-YKD-----ILSVFE--DAFVDN----FDCK-DVQDMPKSIL---SK 48

Query: 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQ 307
            EI          D   +  +A +   +L       +    E  +V +FVE ++R +Y  
Sbjct: 49  EEI----------DHIIMSKDAVSGTLRLFWT----LLSKQEE-MVQKFVEEVLRINYK- 92

Query: 308 LQFQAAWALTNIAS---GTSENTKVVIE-----HDAVPIFVKLLASPSDDV-REQAVWAL 358
                 + ++ I +     S  T++ IE     ++   +F K       +V R Q    L
Sbjct: 93  ------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKL 140

Query: 359 GNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS---MLRIATTTL-SNLCRGK------ 408
                                  L +L     +    +L    T +  ++C         
Sbjct: 141 RQA--------------------LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 409 PRPLF-------DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAG 461
              +F       +     L  L +L++  D              S   ++  I+  I + 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN----------WTSRSDHSSNIKLRIHS- 229

Query: 462 VCGRLVELLGHPS-PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSI 520
           +   L  LL      + L         +V+  + Q     N   + C + LL    K   
Sbjct: 230 IQAELRRLLKSKPYENCL---------LVL-LNVQNAKAWNAFNLSCKI-LLTTRFKQ-- 276

Query: 521 KKEVSWIISNIACGNREQIQAVID--AGL-----IGPLVNLLQNAEFDIKEEA------A 567
                  +++          ++      L        L+  L     D+  E        
Sbjct: 277 -------VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 568 WAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE------------- 614
            +I   S R                  CD L      I+   L  LE             
Sbjct: 330 LSIIAESIRDGLATWDNWK-----HVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSV 380

Query: 615 -----NI----LKV--GEAEKNTDSDIGDINQFAQ--LVEE--AEGLEKIENLQ----SH 655
                +I    L +   +  K+    +  +N+  +  LVE+   E    I ++       
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 656 DNNE--IHEKSVKILETY 671
             NE  +H     I++ Y
Sbjct: 439 LENEYALHR---SIVDHY 453

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 51/327 (15%), Positives = 95/327 (29%), Gaps = 103/327 (31%)

Query: 3   GGDVNNLPR----------GLFFEKLERYRILIGYFWNRKYNIYSRDFRIELNT--KVCL 50
                +LPR           +  E +         +  +  N        +L T  +  L
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCD------KLTTIIESSL 363

Query: 51  -------------------KDVLI-VQLRGIEHLGL--EGLQEQDVQNFVNELVKLQGSS 88
                                  I   L     L L    + + DV   VN+L K     
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTIL-----LSLIWFDVIKSDVMVVVNKLHK----- 413

Query: 89  QLKHLYISGSRLALNPEESERPEKLSYDIPSNEIILEDDISIAKSLFIEKKLTLSYLKSL 148
                        +     ++P++ +  IPS  I LE  + +     + + +   Y    
Sbjct: 414 ----------YSLVE----KQPKESTISIPS--IYLELKVKLENEYALHRSIVDHY-NIP 456

Query: 149 TSFCSGSCAIKFPSLEVLVVDD------CHNMMIFSRGELSAPM------LHKVQLKTWD 196
            +F S              +D        H++      E              ++ K   
Sbjct: 457 KTFDSDDLIP-------PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-R 508

Query: 197 KEHSAW--KDDLNTTIQQVNLKRESFIKK---RREGLQS--QSYLPSALAPSINL-HTKL 248
            + +AW     +  T+QQ+    + +I     + E L +    +LP      I   +T L
Sbjct: 509 HDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 249 EILPMMVAGVWSDDNNLQLEATTQFQK 275
             + +M     ++D  +  EA  Q Q+
Sbjct: 568 LRIALM-----AEDEAIFEEAHKQVQR 589

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 68.5 bits (167), Expect = 4e-12
 Identities = 60/363 (16%), Positives = 127/363 (34%), Gaps = 24/363 (6%)

Query: 236 SALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPR 295
            A++   +          +V  +   D      +      L S+    +   +++ +   
Sbjct: 112 RAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSAC---GLFSVCYPRVSSAVKAELRQY 168

Query: 296 FVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAV 355
           F   L  +D P ++  AA  L   A     +    ++ + +P+F  L +   D VR  AV
Sbjct: 169 FRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAV 224

Query: 356 WALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ 415
            A  N+A            E  ++P L Q  E     +  +     + L +     +   
Sbjct: 225 EACVNIAQ----LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT 280

Query: 416 VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSP 475
               +PA   L+   + +V   A   +     + + D  + VI + +   + EL+   + 
Sbjct: 281 D--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ 338

Query: 476 SVLTPALWTVGNI--VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533
            V +     +  +  ++G D   + ++     P  LA L              IISN+ C
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLL-----PLFLAQLKDECPEVRLN----IISNLDC 389

Query: 534 GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKP 593
            N       +   L+  +V L ++A++ ++      +   + +   +     +   C+  
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW 449

Query: 594 LCD 596
           L D
Sbjct: 450 LVD 452

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.4 bits (143), Expect = 3e-09
 Identities = 59/408 (14%), Positives = 125/408 (30%), Gaps = 37/408 (9%)

Query: 234 LPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVV 293
            PS       +     +  +    V+ + +    +      +LLS     I+E + + + 
Sbjct: 240 YPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELL---RLLSSAC--IDETMRTYIT 294

Query: 294 PRFVEFLMRE-DYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352
             +++ L R  +   +Q  +A  L    S T      +       IF+  ++       E
Sbjct: 295 ENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRIVPKVE 352

Query: 353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412
            +V AL  ++  +S    +  +E     LL  +        L      ++NL        
Sbjct: 353 MSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412

Query: 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDK-IQAVIEAGVCGRLVELLG 471
                                 +          + +       + ++   +   L   + 
Sbjct: 413 XXXXXXXXXXXXXXXXXPAADKVGAEK-----AAKEDILLFNEKYILRTELISFLKREMH 467

Query: 472 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS--IKKEVSWIIS 529
           + SP+     +  + NI    +F  Q +   GAV  +L  L +       I+      ++
Sbjct: 468 NLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526

Query: 530 NIA-CGNREQIQAVID-AGLIGPLVNLLQNAEFDIKE--------------EAAWAISNA 573
            +    N   I         I  L  LL  +                    EA  A++N 
Sbjct: 527 RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNL 586

Query: 574 SSRGTHDQIK----YLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL 617
           +S  T D  +     + T+     + +L+   +  +    LE + N++
Sbjct: 587 ASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 51.7 bits (123), Expect = 6e-07
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 13/183 (7%)

Query: 235 PSALAPSINLHTKLEILPMMVAGVWSDDNNLQ-LEATTQFQKLLSIESMPIEEVIESGVV 293
            +A+     L  +   +                 EA      L S E+   EEV +  V 
Sbjct: 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603

Query: 294 PR----FVEFLMREDYPQLQFQAAWALTNIASGTSE------NTKVVIEHDAVPIFVKLL 343
            +     +E LM ++   LQ      ++N+ S          N +         I VKLL
Sbjct: 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL 663

Query: 344 ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQL--NEHTELSMLRIATTTL 401
                + +        N+A         +L++  LI    Q+  ++  ++ + +      
Sbjct: 664 QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLF 723

Query: 402 SNL 404
             L
Sbjct: 724 FGL 726

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 34/143 (23%)

Query: 300 LMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALG 359
            M ++   ++   + AL+ +              +A    ++ L++    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 360 NVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPA 419
           N   + +            +  L +L E     +   A  +L  +  G  R         
Sbjct: 68  NFQDERA------------VEPLIKLLEDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 420 LPALAQLIHSNDEQVLTDACWAL 442
             A+ +L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 37/145 (25%)

Query: 334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSM 393
             +      +A  +  VR     AL              + + A  PLL  L+       
Sbjct: 12  SGLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESLSNEDWR-- 57

Query: 394 LRI-ATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNND 452
           +R  A   + N      R        A+  L +L+  +   V + A  +L    G     
Sbjct: 58  IRGAAAWIIGNF--QDER--------AVEPLIKLLEDDSGFVRSGAARSL-EQIGGE--- 103

Query: 453 KIQAVIEAGVCGRLVELLGHPSPSV 477
               V  A     + +L    +   
Sbjct: 104 ---RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 24/154 (15%), Positives = 44/154 (28%), Gaps = 36/154 (23%)

Query: 417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPS 476
              L      +   ++ V  D   AL    GD          E      L+E L +    
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTAL-SRMGDE-------AFEP-----LLESLSNEDWR 57

Query: 477 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR 536
           +   A W +GN    D+          AV  L+ LL  +    ++   +  +  I     
Sbjct: 58  IRGAAAWIIGNF--QDE---------RAVEPLIKLLEDDSGF-VRSGAARSLEQIG---- 101

Query: 537 EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI 570
                     +   +  L +      ++ A   +
Sbjct: 102 -------GERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVR 351
            V   ++ L  +D   ++  AA +L  I                     KL  + +   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFAR 121

Query: 352 EQAVWALG 359
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 51/404 (12%), Positives = 127/404 (31%), Gaps = 36/404 (8%)

Query: 238 LAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLS-----IESMPIEEVIESGV 292
           L   +  +    I+  +   + SD   L+  ++   + ++           +   +   +
Sbjct: 75  LVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 134

Query: 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352
             R    + +++   +Q +A   + ++ S       V      +   +  L SP   VR+
Sbjct: 135 TGRLTSAIAKQEDVSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRK 193

Query: 353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412
           + + ALG++      C ++V  +  +  LL++L+++  +S  R     ++ + R     +
Sbjct: 194 RTIIALGHLVM---SCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 249

Query: 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH 472
            + +   +P + +  + +D+++      A          +    V    +    ++ L +
Sbjct: 250 GEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST--IINICLKYLTY 307

Query: 473 PSPSVLTPALWTVGNIVMGDDFQTQCIINHG--------------AVPCLLALLIHNHK- 517
                          +            +                A  CL A++   H+ 
Sbjct: 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 367

Query: 518 --NSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS 575
                K     +IS            V  A     L+   +  +  + +  A        
Sbjct: 368 LPEFYKTVSPALISRFKEREENVKADVFHA--YLSLLKQTRPVQSWLCDPDAMEQGETPL 425

Query: 576 RGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV 619
                Q+  +V     K L   ++    K    C   L  ++ V
Sbjct: 426 TMLQSQVPNIV-----KALHKQMKEKSVKTRQCCFNMLTELVNV 464

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 30/261 (11%), Positives = 80/261 (30%), Gaps = 23/261 (8%)

Query: 231 QSYLPSALAPSINLHTKLEILPMMVAGVWSDDN-NLQLEATTQFQKLLSIESMPIEEVIE 289
             +  + +    N    +++L M+   V+S        ++     K ++  +    +   
Sbjct: 756 LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 815

Query: 290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDD 349
           + V     +         ++  A  +L  +      + ++ ++     + ++  +SPS++
Sbjct: 816 AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEE 871

Query: 350 VREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP 409
           V+  A +ALG+++  +             +P + Q           +  +    +     
Sbjct: 872 VKSAASYALGSISVGNL---------PEYLPFVLQEITSQPKRQYLLLHSLKEIISSASV 922

Query: 410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL 469
             L   V      L +     +E         L          K+  +    +  RL   
Sbjct: 923 VGLKPYVENIWALLLKHCECAEEGTRNVVAECL---------GKLTLIDPETLLPRLKGY 973

Query: 470 LGHPSPSVLTPALWTVGNIVM 490
           L   S    +  +  V   + 
Sbjct: 974 LISGSSYARSSVVTAVKFTIS 994

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 40/291 (13%), Positives = 90/291 (30%), Gaps = 33/291 (11%)

Query: 289 ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK--VVIEHDAVPIFVKLLASP 346
           +   V   +  L   D+  +++     LT++        +  +++    V   + LLA  
Sbjct: 120 QQENVTLLLSLLEEFDF-HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178

Query: 347 SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRI---ATTTLSN 403
            + +R   V  L  +   +   + +V  E A   LL  + E        +       L N
Sbjct: 179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238

Query: 404 LCRGKP--RPLFDQVRPALPALAQLIHSNDEQ------------VLTDACWALFGLSGDR 449
           L +     +  F +    +  +       DE             ++      L   +   
Sbjct: 239 LLKNNNSNQNFFKEGS-YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297

Query: 450 NNDKI--QAVIEAGVCGRLVELLGHP--SPSVLTPALWTVGNIVMGD--------DFQTQ 497
                  +A+ + G+  +L  +L        +LT  + TV  ++ G              
Sbjct: 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAP 357

Query: 498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI 548
                 A+  LL  +++  +  + +              ++ Q  I + L+
Sbjct: 358 SNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLL 408

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 55.6 bits (133), Expect = 4e-08
 Identities = 56/473 (11%), Positives = 135/473 (28%), Gaps = 58/473 (12%)

Query: 229 QSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVI 288
           +   +  S L       + ++ +   +  + +  N    +                 +  
Sbjct: 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362

Query: 289 ESGVVPRFVEFL---MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS 345
            + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L+  
Sbjct: 363 GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND 422

Query: 346 PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS--MLRIATTTLSN 403
            S  V+E   W +G +A       + +  +  L  ++       +    +    + T+ N
Sbjct: 423 QSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIIN 479

Query: 404 LCRGKPRPLFDQVRPALPA-LAQLIHS-----NDEQVLTDACWALFGL---SGDRNNDKI 454
           L           +    PA +  LI +     N+      A  AL  +   + D   +  
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS 539

Query: 455 QAVIEAGVCGRLVELLGHPSPSVLTP-------------ALWTVGNIVMGDDFQTQCIIN 501
            ++    V  +L + +      +                 +            +      
Sbjct: 540 ASISTF-VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--- 595

Query: 502 HGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD 561
              +     LL       I+ +V + IS +A    +  +  ++      L+  L   +  
Sbjct: 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSP 654

Query: 562 IKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE 621
           +   A   I++                     L +  +     ++ V  + + N     E
Sbjct: 655 VSITAVGFIAD-----------------ISNSLEEDFRRYSDAMMNVLAQMISNPNARRE 697

Query: 622 AEKNTDSDIGDI-----NQFAQLVEE-AEGLEKIENLQSHDNNEIHEKSVKIL 668
            +    S  GDI       F   + +        +N +  +           +
Sbjct: 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKV 750

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 50.2 bits (119), Expect = 8e-07
 Identities = 29/203 (14%), Positives = 64/203 (31%), Gaps = 12/203 (5%)

Query: 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQL 308
             L +++     DD   +L A     ++L      +  ++    +  F+   + ++  ++
Sbjct: 33  RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFIN-ALSQENEKV 91

Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALG--NVAADSS 366
             +A  AL  +       +K  +   A    V LL SP D +R + +  L       DS 
Sbjct: 92  TIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK 149

Query: 367 GCRDLVLSEGALIPLLAQ------LNEHTELSMLRIATTTLSNLCRGKPRPLFDQVR-PA 419
             R  +        L  +             S      T + +      +   + +   A
Sbjct: 150 LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELA 209

Query: 420 LPALAQLIHSNDEQVLTDACWAL 442
           L  L + +     + +      +
Sbjct: 210 LDVLEKALSFPLLENVKIELLKI 232

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 77/467 (16%), Positives = 156/467 (33%), Gaps = 43/467 (9%)

Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
           +   + W + +   +  V     S    +   L++  Y+   + P        EIL  ++
Sbjct: 120 EIPVNQWPELIPQLVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAII 178

Query: 256 AGVWSDDNN--LQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAA 313
            G+  ++ +  ++L AT      L       ++  E   + + V    +    +++  A 
Sbjct: 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238

Query: 314 WALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA----------- 362
             L  I S   +  +  +      I ++ + S  D+V  Q +    NV            
Sbjct: 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298

Query: 363 -ADSSGCRDLVLS-------EGALIPLLAQLNEH-------TELSMLRIATTTLSNLCRG 407
            A   G      S          L+P+L Q            + +  + A   L  L   
Sbjct: 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358

Query: 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLV 467
               +   V   LP + + I + D +    A  A   +       +++ ++   +   L+
Sbjct: 359 CEDDIVPHV---LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM-PTLI 414

Query: 468 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS-IKKEVSW 526
           EL+  PS  V   A WTVG I   +      I +    P L  L+        +   V W
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRIC--ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW 472

Query: 527 IISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLV 586
             S++A    E     +      P    L ++   I ++              + ++   
Sbjct: 473 AFSSLAEAAYEAAD--VADDQEEPATYCLSSSFELIVQKLLETTDRPDGH--QNNLRSSA 528

Query: 587 TEGCIKPLCDLLQCADP---KIVTVCLEGLENILKVGEAEKNTDSDI 630
            E  ++ + +  +   P   K   V +E L+ +L++    ++T   I
Sbjct: 529 YESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRI 575

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 88/509 (17%), Positives = 159/509 (31%), Gaps = 85/509 (16%)

Query: 216 KRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK 275
             E+  + R     S+ Y   AL   + +    + L         DD N    A      
Sbjct: 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPIL--TQTLTKQDENDDDDDWNPCKAAGVCLML 354

Query: 276 LLSIESMPIEEVIESGVVPRFVEFL---MREDYPQLQFQAAWALTNIASGTSENTKVVIE 332
           L            E  +VP  + F+   ++    + +  A  A   I  G   +    + 
Sbjct: 355 L--------ATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406

Query: 333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH--TE 390
             A+P  ++L+  PS  VR+ A W +G +        +  +++  L PLL  L E    E
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAE 463

Query: 391 LSMLRIATTTLSNLCRGKP-----------------RPLFDQVRPALPALAQLIHSNDEQ 433
             +        S+L                         F+ +   L         +   
Sbjct: 464 PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNN 523

Query: 434 VLTDACWALFGLSGDRNNDKIQAVIE--AGVCGRLVELLGHPSP--------------SV 477
           + + A  +L  +  +   D   AV +    +  RL ++L   S               S+
Sbjct: 524 LRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSL 583

Query: 478 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI-ISNIACGNR 536
           L   L  V   V   D           +  LL +      +   +E + + +S +     
Sbjct: 584 LCATLQNVLRKVQHQDALQIS---DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640

Query: 537 EQIQAVIDAGLIGPLVNLLQN-AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC 595
            +    ++A     L   L+N AE+ +   A   +         D  + L +   I P C
Sbjct: 641 GEFLKYMEA-FKPFLGIGLKNYAEYQVCLAAVGLVG--------DLCRALQSN--IIPFC 689

Query: 596 DLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDI-----NQFAQLVEE-AEGLEKI 649
           D       +++ + LE L N       +    S  GDI      +F + +E     L++ 
Sbjct: 690 D-------EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQA 742

Query: 650 ENLQSHDNNEIHEKSVK-----ILETYWC 673
              Q   ++      +       LE Y  
Sbjct: 743 SQAQVDKSDYDMVDYLNELRESCLEAYTG 771

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 55/345 (15%), Positives = 113/345 (32%), Gaps = 35/345 (10%)

Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
           +   + W + +   +  V     S    +   L++  Y+   + P        EIL  ++
Sbjct: 120 EIPVNQWPELIPQLVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAII 178

Query: 256 AGVWSDDNN--LQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAA 313
            G+  ++ +  ++L AT      L       ++  E   + + V    +    +++  A 
Sbjct: 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238

Query: 314 WALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL 373
             L  I S   +  +  +      I ++ + S  D+V  Q +    NV  +         
Sbjct: 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298

Query: 374 SEGA-------------------LIPLLAQLNEH-------TELSMLRIATTTLSNLCRG 407
                                  L+P+L Q            + +  + A   L  L   
Sbjct: 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358

Query: 408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLV 467
               +       LP + + I + D +    A  A   +       +++ ++   +   L+
Sbjct: 359 CEDDIVP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM-PTLI 414

Query: 468 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 512
           EL+  PS  V   A WTVG   + +      I +    P L  L+
Sbjct: 415 ELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDVYLAPLLQCLI 457

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 36/336 (10%), Positives = 96/336 (28%), Gaps = 26/336 (7%)

Query: 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQL 308
             +  + A    ++  ++         LL +    +   + +  +  ++    ++    +
Sbjct: 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN--IVEYMLQRTQDQDENV 272

Query: 309 QFQAAWALTNIA-SGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367
             +A      +A     ++  V      +P+ V  +     D+        G    D + 
Sbjct: 273 ALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332

Query: 368 CRDLVLSEGA-----------------LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPR 410
               +    A                 ++PLL +L  H E  +       L  +  G  +
Sbjct: 333 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 392

Query: 411 PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL 470
            +   +   +P L Q +      V +  CW L   +    +          +   L++ +
Sbjct: 393 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ-PPDTYLKPLMTELLKRI 451

Query: 471 GHPSPSVLTPALWTVGNIVMGDDFQTQCIINH--GAVPCLLALLIHNHKNSIKKEVSWII 528
              +  V   A      +    +     ++ +    +  L+         ++      I 
Sbjct: 452 LDSNKRVQEAACSAFATLE---EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIG 508

Query: 529 SNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKE 564
           +          +      L+ PL+      + + K+
Sbjct: 509 TLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD 544

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 41/220 (18%)

Query: 260 SDDNNLQLEATTQFQKLLSIESMP-----IEEVIESGVVP---------------RFVEF 299
           S D  +Q     + ++L            +   ++S   P                F  F
Sbjct: 24  SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNF 83

Query: 300 --------------LMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS 345
                          + +  P ++      +T IAS            D +P    LL S
Sbjct: 84  PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW----PDLLPKLCSLLDS 139

Query: 346 PSDDVREQAVWALGNVAADSSGCRD---LVLSEGALIPLLAQLNEHTELSMLRIATTTLS 402
              +  E A  AL  +  DS+   D   L      +IP   Q  +H+   +   A   ++
Sbjct: 140 EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVN 199

Query: 403 NLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWAL 442
                + + L   +   +  L  L    + +V  + C AL
Sbjct: 200 QFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 18/174 (10%)

Query: 215 LKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQ 274
           + ++S +       +  + L   LA   + +    +  ++    + +     + A  +  
Sbjct: 65  ITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK--FKEKKPNVVTALREAI 122

Query: 275 KLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD 334
             +   S  +E   ES      +   +    P ++ + A  +    + T           
Sbjct: 123 DAI-YASTSLEAQQES------IVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK 175

Query: 335 A-VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE 387
                 VK L  P   VR+ +  ALG +          ++ + A+ PLLA ++ 
Sbjct: 176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIK--------LMGDKAVTPLLADVDP 221

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 53/291 (18%), Positives = 92/291 (31%), Gaps = 29/291 (9%)

Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH 388
           +V +   +     L+A  +  V   AV AL  ++        L L+   +  LL  LNE 
Sbjct: 155 MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC 214

Query: 389 TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGD 448
           TE   + I    LSN      R    + +     +   +   +  V+  A   L      
Sbjct: 215 TEWGQIFI-LDCLSNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLEL 269

Query: 449 RNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 508
              D     +        +  L    P V   AL  +  IV               +   
Sbjct: 270 LPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQ---------KRPEILKQE 320

Query: 509 LA--LLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA 566
           +    + +N    +K E   I+  +A  ++  I  V+       L       + D   +A
Sbjct: 321 IKVFFVKYNDPIYVKLEKLDIMIRLA--SQANIAQVLAE-----LKEYATEVDVDFVRKA 373

Query: 567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL 617
             AI   + +           E C+  L DL+Q     +V   +  + +I 
Sbjct: 374 VRAIGRCAIKVEQS------AERCVSTLLDLIQTKVNYVVQEAIVVIRDIF 418

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 9/36 (25%)

Query: 216 KRESFIKKRREGLQS--QSYLPSALAPSINLHTKLE 249
           K+   +KK    LQ+  + Y   + AP++ +   +E
Sbjct: 19  KQA--LKK----LQASLKLYADDS-APALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	684
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.98
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.82
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.81
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.73
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.72
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.71
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.69
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.69
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.67
3grl_A	651	General vesicular transport factor P115; vesicle t	99.64
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.6
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.59
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.54
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.52
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.52
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.5
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.49
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.49
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.48
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.43
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.39
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.38
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.38
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.36
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.36
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.35
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.17
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.15
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.99
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.99
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.92
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.88
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.78
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.73
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.64
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.61
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.6
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.56
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.56
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.52
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.52
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.5
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.37
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.35
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.24
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.14
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.08
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.99
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.95
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.93
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.87
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.8
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.8
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.79
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.78
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.76
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.7
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.68
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.56
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.21
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.15
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.1
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.1
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.89
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.84
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.73
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.72
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.71
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.47
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.33
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.32
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.22
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.22
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.82
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.55
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.46
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.01
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.93
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.92
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.41
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.4
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.19
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.97
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.88
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.81
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.7
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.46
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.3
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.14
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.02
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	92.89
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.78
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	91.74
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.97
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	89.1
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	83.95
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	82.37
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	81.89

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.2e-62  Score=546.70  Aligned_cols=484  Identities=41%  Similarity=0.662  Sum_probs=403.6

Q ss_pred             cccchhhhhccccc-chhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhcCC
Q 035507          184 APMLHKVQLKTWDK-EHSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSD  261 (684)
Q Consensus       184 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~  261 (684)
                      .|.-+.-.|++.+. .++..++|.+.++++||+||+ +++|||++.....+..................++.+++.++|+
T Consensus         9 ~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~   88 (529)
T 3tpo_A            9 LPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSN   88 (529)
T ss_dssp             -----------------------------------CCSCSCCCCCC---------------CGGGSSCCHHHHHHHHTSS
T ss_pred             CcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHHHHHHhcCC
Confidence            34333334443332 344567788999999999999 9999998754322211110010111112224689999999999


Q ss_pred             CHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH
Q 035507          262 DNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV  340 (684)
Q Consensus       262 ~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li  340 (684)
                      |++.|+.|+..++++++.+. ++++.+++.|++|.|+++|+..+++.+|.+|+|+|+||+.++++++..+++.|++|.|+
T Consensus        89 d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv  168 (529)
T 3tpo_A           89 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI  168 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            99999999999999998776 88999999999999999998776699999999999999999999999999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC----chHHHHHHHHHHHHhccCC-CCCChhh
Q 035507          341 KLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT----ELSMLRIATTTLSNLCRGK-PRPLFDQ  415 (684)
Q Consensus       341 ~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~----~~~v~~~a~~~L~nL~~~~-~~~~~~~  415 (684)
                      .+|.+++..++++|+|+|+||+.+++.+|+.+.+.|++++|+.++....    ...+++.++|++++++++. +......
T Consensus       169 ~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~  248 (529)
T 3tpo_A          169 SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA  248 (529)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence            9999999999999999999999999999999999999999999996433    3467899999999999987 6667777


Q ss_pred             hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507          416 VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ  495 (684)
Q Consensus       416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  495 (684)
                      ..+++|.|+.++.+++++++.+++|+|++++ ..+++..+.+.+.|+++.|+.+|.++++.++.+|+++|+|++.+++..
T Consensus       249 ~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~-~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  327 (529)
T 3tpo_A          249 VEQILPTLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ  327 (529)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh-hhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence            8999999999999999999999999999999 888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      +..+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++.+++.+++.|++|.|+.++.+++.+++++|+|+|+|++.
T Consensus       328 ~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          328 TQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             HHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999998 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcC
Q 035507          576 RGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSH  655 (684)
Q Consensus       576 ~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~  655 (684)
                      ++++++..+|++.|++++|+++|.+.|++++..++++|.+|++.++..       +..+.++..++++||+++|+.||+|
T Consensus       407 ~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~ggl~~ie~Lq~~  479 (529)
T 3tpo_A          407 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEECGGLDKIEALQRH  479 (529)
T ss_dssp             HSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHTTCHHHHTGGGGC
T ss_pred             CCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc-------cChHHHHHHHHHCCcHHHHHHHHcC
Confidence            889999999999999999999999999999999999999999988765       3467899999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCC
Q 035507          656 DNNEIHEKSVKILETYWCGRV  676 (684)
Q Consensus       656 ~~~~i~~~a~~ii~~~f~~e~  676 (684)
                      +|.+||++|..||++||++||
T Consensus       480 ~n~~i~~~A~~iie~yf~~~~  500 (529)
T 3tpo_A          480 ENESVYKASLNLIEKYFSVEE  500 (529)
T ss_dssp             SSHHHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHHHCCCcc
Confidence            999999999999999998654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.4e-58  Score=509.09  Aligned_cols=459  Identities=43%  Similarity=0.688  Sum_probs=393.9

Q ss_pred             HHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHH
Q 035507          208 TTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIE  285 (684)
Q Consensus       208 ~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~  285 (684)
                      ..++.|+.+++ +..++++...++.+. ...+. .......-..++.+|+.++|+|++.|+.|+.++|+++|.+. |+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~   94 (510)
T 3ul1_B           17 GMLETAAALFERNHMDSPDLGTDDDDL-AMADI-GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID   94 (510)
T ss_dssp             --------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             ccHHHHHHHHHhhccCCccccCCcccc-chhhh-ccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH
Confidence            34567777666 666665554322221 11110 11111111368999999999999999999999999999876 8999


Q ss_pred             HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC
Q 035507          286 EVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS  365 (684)
Q Consensus       286 ~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~  365 (684)
                      .+++.|++|.|+++|++++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++..++++|+|+|+||+.++
T Consensus        95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~  174 (510)
T 3ul1_B           95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG  174 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            99999999999999987766899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHhhcCCHHHHHHHhccCC----chHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHH
Q 035507          366 SGCRDLVLSEGALIPLLAQLNEHT----ELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACW  440 (684)
Q Consensus       366 ~~~r~~i~~~g~l~~Ll~~L~~~~----~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~  440 (684)
                      +.+|+.+.+.|++++|+.++....    ...+++.++|++++++++. +........+++|.|+.++.+++++++..++|
T Consensus       175 ~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~  254 (510)
T 3ul1_B          175 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW  254 (510)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999995432    3467889999999999987 66667777999999999999999999999999


Q ss_pred             HHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhH
Q 035507          441 ALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSI  520 (684)
Q Consensus       441 ~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v  520 (684)
                      +|++++ ..+++..+.+.+.|+++.|+.+|.+++..++.+|+++|+|++.+++..+..+++.|+++.|+.+|.++ +..+
T Consensus       255 aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v  332 (510)
T 3ul1_B          255 AISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNI  332 (510)
T ss_dssp             HHHHHT-SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHH
T ss_pred             HHHHHh-hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHH
Confidence            999999 88888899999999999999999999999999999999999999999999999999999999999998 9999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC
Q 035507          521 KKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC  600 (684)
Q Consensus       521 ~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~  600 (684)
                      ++.|+|+|+|++++++++++.+++.|++|.|+.++.+++.+++++|+|+|+|++.+++.+++.+|++.|++++|+++|++
T Consensus       333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~  412 (510)
T 3ul1_B          333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA  412 (510)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 035507          601 ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCGRVV  677 (684)
Q Consensus       601 ~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~~  677 (684)
                      .|++++..++++|.+|++.+++.       +..+.++..|+++||+++|+.||+|+|++||++|..||++||++||.
T Consensus       413 ~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  482 (510)
T 3ul1_B          413 KDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  482 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             CCHHHHHHHHHHHHHHHHHhHhc-------cchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            99999999999999999988765       34678999999999999999999999999999999999999986643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.3e-54  Score=479.23  Aligned_cols=478  Identities=74%  Similarity=1.105  Sum_probs=401.7

Q ss_pred             cchhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCCCCCCCCCCccchhhhccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035507          197 KEHSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQK  275 (684)
Q Consensus       197 ~~~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~  275 (684)
                      +.++..++|.+.++++||+||+ +++|||++....+. .+.... +.........++.+++.|.+++++.+..|+++|++
T Consensus        23 ~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~~l~~lv~~L~s~~~~~~~~A~~~L~~  100 (528)
T 4b8j_A           23 DAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQA-PVPASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRK  100 (528)
T ss_dssp             ----CCCCC-----------------CCCC------------------------CHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccc-cccccc-ccchhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            3344567888999999999999 99999997532221 000000 11111223578999999999999999999999999


Q ss_pred             HhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHH
Q 035507          276 LLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQA  354 (684)
Q Consensus       276 l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a  354 (684)
                      +++... ++...+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.++++|
T Consensus       101 l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a  180 (528)
T 4b8j_A          101 LLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA  180 (528)
T ss_dssp             HHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             HhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHH
Confidence            998876 8899999999999999999987668999999999999999889999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHH
Q 035507          355 VWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQV  434 (684)
Q Consensus       355 ~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v  434 (684)
                      +|+|+||+.+.+.+++.+...|++++|+.++..+.+..+++.++|+|++|+...+........+++|.|+.++.++++++
T Consensus       181 ~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v  260 (528)
T 4b8j_A          181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEV  260 (528)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHH
Confidence            99999999998888899999999999999997778899999999999999999877777788999999999999999999


Q ss_pred             HHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc
Q 035507          435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH  514 (684)
Q Consensus       435 ~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~  514 (684)
                      +..++|+|++++ ...+...+.+.+.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+++.|+++.|+.+|.+
T Consensus       261 ~~~a~~aL~~l~-~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~  339 (528)
T 4b8j_A          261 LTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ  339 (528)
T ss_dssp             HHHHHHHHHHHT-SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC
Confidence            999999999999 8888888899999999999999999999999999999999999999899999999999999999987


Q ss_pred             CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHH
Q 035507          515 NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPL  594 (684)
Q Consensus       515 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L  594 (684)
                      +.++.++++|+|+|+|++.+++++++.+++.|++|.|+.++.+++++++..|+|+|+|++..++++...++++.|++++|
T Consensus       340 ~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  419 (528)
T 4b8j_A          340 NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL  419 (528)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence            65789999999999999999989999999999999999999999999999999999999998789999999999999999


Q ss_pred             HhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507          595 CDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCG  674 (684)
Q Consensus       595 ~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~  674 (684)
                      ++++.+.+++++..++++|.+++..++.......  ...++|+..++++||+++|+.|++|+|++|+++|..|+++||+.
T Consensus       420 ~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          420 CDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999998765321100  13467999999999999999999999999999999999999988


Q ss_pred             CCCCC
Q 035507          675 RVVGP  679 (684)
Q Consensus       675 e~~~~  679 (684)
                      |+.++
T Consensus       498 e~~~~  502 (528)
T 4b8j_A          498 EEDDT  502 (528)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            66543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=8.9e-51  Score=452.45  Aligned_cols=475  Identities=51%  Similarity=0.734  Sum_probs=414.5

Q ss_pred             hhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCC---CCCCCCCCC--CCCccch-hhhccHHHHHHHhcCCCHHHHHHHHH
Q 035507          199 HSAWKDDLNTTIQQVNLKRE-SFIKKRREGLQ---SQSYLPSAL--APSINLH-TKLEILPMMVAGVWSDDNNLQLEATT  271 (684)
Q Consensus       199 ~~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~---~~~~~~~~~--~~~~~~~-~~~~~l~~lv~~L~s~~~~~~~~a~~  271 (684)
                      ++..++|.+.++++||+||+ ++.|||++...   ....++...  ....... ...+.++.+++.|++++++.+..|++
T Consensus        30 ~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~~~~~~~~A~~  109 (530)
T 1wa5_B           30 DELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATV  109 (530)
T ss_dssp             -CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHHHHHSCSSHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            44567888899999999999 99999998542   111000000  0000111 12357999999999999999999999


Q ss_pred             HHHHHhcCC-CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHH
Q 035507          272 QFQKLLSIE-SMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDV  350 (684)
Q Consensus       272 ~L~~l~s~~-~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v  350 (684)
                      +|+++++.. .+++..+++.|++|.|+++|.+++++.+|..|+|+|++++.++++.+..+++.|+++.|+.+|.++++.+
T Consensus       110 ~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v  189 (530)
T 1wa5_B          110 KFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV  189 (530)
T ss_dssp             HHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHH
T ss_pred             HHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence            999998875 4778889999999999999998734899999999999999988999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcC
Q 035507          351 REQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHS  429 (684)
Q Consensus       351 ~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~  429 (684)
                      ++.|+|+|++++.+.+..++.+...|++++|+.++. +.+..++..++|+|++++.+. +........+++|.|+.++.+
T Consensus       190 r~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~  268 (530)
T 1wa5_B          190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS  268 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc-cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC
Confidence            999999999999988888888899999999999994 588899999999999999987 666777779999999999999


Q ss_pred             CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHH
Q 035507          430 NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL  509 (684)
Q Consensus       430 ~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~  509 (684)
                      +++.++..++|+|++++ ...++..+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.|+++.|+
T Consensus       269 ~d~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  347 (530)
T 1wa5_B          269 MDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALR  347 (530)
T ss_dssp             CCHHHHHHHHHHHHHHH-SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh-CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHH
Confidence            99999999999999999 88888888899999999999999999999999999999999999998889999999999999


Q ss_pred             HHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCH--HHHHHHHH
Q 035507          510 ALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTH--DQIKYLVT  587 (684)
Q Consensus       510 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~--~~~~~l~~  587 (684)
                      .+|.++ ++.+++.|+|+|+|++.+++++++.+++.|++|.|+.++.+++++++..|+|+|+|++..+++  ++..++.+
T Consensus       348 ~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~  426 (530)
T 1wa5_B          348 LLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS  426 (530)
T ss_dssp             HHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH
T ss_pred             HHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            999998 999999999999999998889999999999999999999999999999999999999987766  88899999


Q ss_pred             CCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 035507          588 EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKI  667 (684)
Q Consensus       588 ~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~i  667 (684)
                      .|+++.|+.++.+.+++++..++++|.+++..++......  .+..++++..++++||+++|+.|++|++++|+++|..+
T Consensus       427 ~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~i  504 (530)
T 1wa5_B          427 QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI  504 (530)
T ss_dssp             TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999876531100  01245799999999999999999999999999999999


Q ss_pred             HHHhcCCCCCC
Q 035507          668 LETYWCGRVVG  678 (684)
Q Consensus       668 i~~~f~~e~~~  678 (684)
                      |++||.+++.+
T Consensus       505 l~~~~~~~~~~  515 (530)
T 1wa5_B          505 IETYFGEEEDA  515 (530)
T ss_dssp             HHHHSSSCC--
T ss_pred             HHHHCCccccc
Confidence            99999876653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.4e-44  Score=392.33  Aligned_cols=425  Identities=56%  Similarity=0.844  Sum_probs=384.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSI-ESMPIEEVIES-GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~-~~~~~~~ii~~-g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .++.+++.++++++.++..|+..|+++++. ..++.+.+++. |++|.|+++|++++++.+|..|+++|.+++.++++.+
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            378999999999999999999999998874 34667778888 9999999999988448999999999999999888888


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..+++.|+++.|+.+|.++++.+++.|+++|++++.+.+..++.+...|+++.++.++..+.+..++..++|+|++++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88999999999999999999999999999999999988778888889999999999996567899999999999999988


Q ss_pred             C-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507          408 K-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG  486 (684)
Q Consensus       408 ~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  486 (684)
                      . +........+++|.++.++.++++.++..++|+|++++ ...++....+.+.|+++.|+.++.++++.++..|+++|+
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  259 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG  259 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT-SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH-CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence            6 55556666999999999999999999999999999999 777778888889999999999999999999999999999


Q ss_pred             HHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHH
Q 035507          487 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA  566 (684)
Q Consensus       487 nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a  566 (684)
                      +++.+.+...+.+++.|+++.|+.++.++ ++.+|+.|+|+|+|++.++++..+.+++.|++|.|+.++.+++++++..|
T Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a  338 (450)
T 2jdq_A          260 NIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA  338 (450)
T ss_dssp             HHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            99999988888899999999999999998 99999999999999999988999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchH
Q 035507          567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL  646 (684)
Q Consensus       567 ~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~  646 (684)
                      +|+|+|++.+++++..+++.+.|+++.|++++.+.+++++..++++|.+++..++......  ....++|+..+.+.||+
T Consensus       339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~  416 (450)
T 2jdq_A          339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN--GTGINPYCALIEEAYGL  416 (450)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS--CSCCCHHHHHHHHHHCH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc--ccchhHHHHHHHHcCcH
Confidence            9999999987778888999999999999999999999999999999999998765432100  01245799999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 035507          647 EKIENLQSHDNNEIHEKSVKILETYWCGRVVG  678 (684)
Q Consensus       647 ~~L~~L~~~~~~~i~~~a~~ii~~~f~~e~~~  678 (684)
                      ++|..|++|++++|+++|..++++||++|+.+
T Consensus       417 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          417 DKIEFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            99999999999999999999999999887754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.8e-39  Score=358.27  Aligned_cols=373  Identities=27%  Similarity=0.398  Sum_probs=332.4

Q ss_pred             hhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507          246 TKLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS  324 (684)
Q Consensus       246 ~~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~  324 (684)
                      .+.|.+|.|+++|++ +++.+|..|+|+|.++++..+.....+++.|++|.|+++|++++ ++++..|+|+|+||+.+++
T Consensus        97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~  175 (510)
T 3ul1_B           97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGS  175 (510)
T ss_dssp             HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred             HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCH
Confidence            356899999999975 56899999999999999988788899999999999999999988 8999999999999999889


Q ss_pred             hhHHHHHhcCChHHHHHhcCCCC-----hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507          325 ENTKVVIEHDAVPIFVKLLASPS-----DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT  399 (684)
Q Consensus       325 ~~~~~i~~~g~i~~Li~lL~~~~-----~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~  399 (684)
                      +.+..+.+.|+++.|+.++.+++     ..+.+.++|+|+|++.............++++.|+.++ .+.+.+++..++|
T Consensus       176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~  254 (510)
T 3ul1_B          176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW  254 (510)
T ss_dssp             HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHH
Confidence            99999999999999999998754     35788999999999987766566666677889999988 7788899999999


Q ss_pred             HHHHhccCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccH
Q 035507          400 TLSNLCRGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL  478 (684)
Q Consensus       400 ~L~nL~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~  478 (684)
                      +|++|+...... ......+++|.|+.++.++++.++..+++++++++ .+++.....+++.|+++.|+.+|.++++.++
T Consensus       255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~-~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~  333 (510)
T 3ul1_B          255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ  333 (510)
T ss_dssp             HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTGGGGCC-CTTCSSHHHH
T ss_pred             HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh-cCCHHHHHHHhhccchHHHHHHhcCCCHHHH
Confidence            999999876322 23345789999999999999999999999999999 8899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhcc
Q 035507          479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQN  557 (684)
Q Consensus       479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~  557 (684)
                      ..|+++|+|++.+++.+.+.+++.|++|.|+.++.++ +..+|++|+|+|+|++. ++.+++..+++.|+++.|+++|..
T Consensus       334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~  412 (510)
T 3ul1_B          334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA  412 (510)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence            9999999999999999999999999999999999999 99999999999999987 678899999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHhhcC----C-CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          558 AEFDIKEEAAWAISNASSR----G-THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       558 ~~~~v~~~a~~aL~nl~~~----~-~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      .+++++..++++|.|++..    + .......+.+.|+++.|..+..+++.++...+..+|.+++..++.
T Consensus       413 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  482 (510)
T 3ul1_B          413 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  482 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999852    2 233455567899999999999999999999999999999976543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3e-38  Score=350.50  Aligned_cols=373  Identities=26%  Similarity=0.391  Sum_probs=332.6

Q ss_pred             hhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507          246 TKLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS  324 (684)
Q Consensus       246 ~~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~  324 (684)
                      .+.|.+|.|++.|.+ +++.+|..|+++|.++++........+++.|++|.|+.+|.+++ ++++..|+|+|+||+.+++
T Consensus       116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~  194 (529)
T 3tpo_A          116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGS  194 (529)
T ss_dssp             HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCH
T ss_pred             HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCH
Confidence            456899999999974 56999999999999999987778889999999999999999988 8999999999999999899


Q ss_pred             hhHHHHHhcCChHHHHHhcCCCC-----hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507          325 ENTKVVIEHDAVPIFVKLLASPS-----DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT  399 (684)
Q Consensus       325 ~~~~~i~~~g~i~~Li~lL~~~~-----~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~  399 (684)
                      +.+..+++.|+++.|+.+|..++     ..+.+.++|+|+|++.+...........++++.|+.++ .+.+.+++..++|
T Consensus       195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~  273 (529)
T 3tpo_A          195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCW  273 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHH
Confidence            99999999999999999998754     35788999999999988766566666677889999988 7788999999999


Q ss_pred             HHHHhccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccH
Q 035507          400 TLSNLCRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL  478 (684)
Q Consensus       400 ~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~  478 (684)
                      +|++++.+... .......+++|.|+.++.++++.++..++++|++++ .+++.....+++.|+++.|+.+|.++++.++
T Consensus       274 aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~-~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~  352 (529)
T 3tpo_A          274 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ  352 (529)
T ss_dssp             HHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHH
T ss_pred             HHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH-ccchHHHHHHhhcccHHHHHHHHcCCCHHHH
Confidence            99999987632 223345889999999999999999999999999999 8899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhcc
Q 035507          479 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQN  557 (684)
Q Consensus       479 ~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~  557 (684)
                      ..|+++|+|++.+++.+.+.+++.|++|.|+.++.++ +..++++|+|+|+|++. ++++++..+++.|+++.|+++|..
T Consensus       353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~  431 (529)
T 3tpo_A          353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA  431 (529)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred             HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence            9999999999999999999999999999999999999 99999999999999987 678899999999999999999999


Q ss_pred             CCHhHHHHHHHHHHHhhcC----CC-HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          558 AEFDIKEEAAWAISNASSR----GT-HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       558 ~~~~v~~~a~~aL~nl~~~----~~-~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      .|++++..++++|.|++..    +. ......+.+.|+++.|..+..+++.++...|..+|.+++..++.
T Consensus       432 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  501 (529)
T 3tpo_A          432 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  501 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999752    22 33445567899999999999999999999999999999875443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.1e-38  Score=344.28  Aligned_cols=402  Identities=17%  Similarity=0.164  Sum_probs=317.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+|.+++.|+++++++|..|+++|++++..+++....+++.|++|.|+++|++++ +.+|..|+|+|.||+.++++++..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5789999999999999999999999988666556668999999999999999887 899999999999999988999999


Q ss_pred             HHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc--------C-------CchHH
Q 035507          330 VIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--------H-------TELSM  393 (684)
Q Consensus       330 i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--------~-------~~~~v  393 (684)
                      +++.|++|.|+++|. ++++++++.|+|+|+||+.+ +..|..+.+ |++++|+.++..        .       .+..+
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999999 78999999999999999998 667888888 999999999931        1       35678


Q ss_pred             HHHHHHHHHHhccCCCCCChhhh-h-chHHHHHHHhcC------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH
Q 035507          394 LRIATTTLSNLCRGKPRPLFDQV-R-PALPALAQLIHS------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR  465 (684)
Q Consensus       394 ~~~a~~~L~nL~~~~~~~~~~~~-~-~~l~~L~~lL~~------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~  465 (684)
                      +++|+|+|+|||.. +....... . |++|.|+.++.+      .+..++.+++++|.+++ ....    .... .....
T Consensus       160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs-~~~~----~~~~-~~~~~  232 (457)
T 1xm9_A          160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS-YRLD----AEVP-TRYRQ  232 (457)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT-TTHH----HHSC-CHHHH
T ss_pred             HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc-cchh----ccCc-chhhh
Confidence            88999999999987 32222222 3 999999999985      46678899999999998 3211    0111 11111


Q ss_pred             HHHhcCCCCcccHhHHHHHHHHHHc---------------CChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507          466 LVELLGHPSPSVLTPALWTVGNIVM---------------GDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN  530 (684)
Q Consensus       466 L~~lL~~~~~~v~~~al~~L~nl~~---------------~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  530 (684)
                      +...+.....  ......++++...               ..+...+.+++.|+++.|+.+|.++.++.+++.|+|+|+|
T Consensus       233 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~n  310 (457)
T 1xm9_A          233 LEYNARNAYT--EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN  310 (457)
T ss_dssp             HHHTC------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             cccccccccc--cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence            2222211000  1111222222211               1234566777889999999999877578999999999999


Q ss_pred             HhcCChH---HH-HHHH-HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh--
Q 035507          531 IACGNRE---QI-QAVI-DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP--  603 (684)
Q Consensus       531 l~~~~~~---~~-~~l~-~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~--  603 (684)
                      +++++..   .+ +.++ +.|++|.|+++|.+++.+++++|+|+|.|++..  . ....++..|++++|+++|...++  
T Consensus       311 l~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~  387 (457)
T 1xm9_A          311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNT  387 (457)
T ss_dssp             HTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCS
T ss_pred             hccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCC
Confidence            9986533   23 4444 689999999999999999999999999999873  3 34556677899999999998754  


Q ss_pred             ----HHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCCCC
Q 035507          604 ----KIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD-NNEIHEKSVKILETYWCGRVVG  678 (684)
Q Consensus       604 ----~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~-~~~i~~~a~~ii~~~f~~e~~~  678 (684)
                          +++..++.+|.+++..+.             .+...+.++||+++|.+|+.|+ ++++|++|..+|..||.+.+..
T Consensus       388 ~~~~~v~~~~l~~l~ni~~~~~-------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          388 SNSEDILSSACYTVRNLMASQP-------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCT-------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             CCcHHHHHHHHHHHHHHHhcCH-------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence                688899999999986543             2578899999999999999999 9999999999999999998875


Q ss_pred             C
Q 035507          679 P  679 (684)
Q Consensus       679 ~  679 (684)
                      .
T Consensus       455 ~  455 (457)
T 1xm9_A          455 G  455 (457)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.4e-38  Score=358.09  Aligned_cols=366  Identities=16%  Similarity=0.128  Sum_probs=319.4

Q ss_pred             cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch-
Q 035507          250 ILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIEEVI-ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE-  325 (684)
Q Consensus       250 ~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~~ii-~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~-  325 (684)
                      .++.++++|.++  |.+++..|+++|..+... ++....++ +.|++|.|+++|++++ +.++..|+|+|+||+.++++ 
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q  455 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQ  455 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhh
Confidence            478899999987  899999999999996554 34455555 5799999999999887 89999999999999986531 


Q ss_pred             ----------------------------hH---HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh
Q 035507          326 ----------------------------NT---KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS  374 (684)
Q Consensus       326 ----------------------------~~---~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~  374 (684)
                                                  .+   +.+++.|++|.|+.+|.++++.++++|+|+|+||+++.+ +|+.+.+
T Consensus       456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~-~r~~Vv~  534 (810)
T 3now_A          456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQ  534 (810)
T ss_dssp             CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH-HHHHHHH
T ss_pred             hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHH
Confidence                                        22   688899999999999999999999999999999998754 7999999


Q ss_pred             cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCCh--hhhhchHHHHHHHhcCCc-HHHHHHHHHHHHhhccCCC
Q 035507          375 EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLF--DQVRPALPALAQLIHSND-EQVLTDACWALFGLSGDRN  450 (684)
Q Consensus       375 ~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~--~~~~~~l~~L~~lL~~~d-~~v~~~al~~L~~L~~~~~  450 (684)
                      .|++++|+.++ .+.+...++.|+|+|++++.+. +...+  ....+++|.|+.+|.++. ...+..|+++|.|++ ..+
T Consensus       535 ~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa-~~~  612 (810)
T 3now_A          535 EGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA-SMN  612 (810)
T ss_dssp             TTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT-TSC
T ss_pred             CCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh-cCC
Confidence            99999999999 5667788999999999999764 22111  123568999999998663 445678999999999 888


Q ss_pred             hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHh-cCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       451 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                      ++..+.+++.|+++.|+.++.++++.++.+|+++|+|++.+.+.+.+ +++ .|.++.|+.++.++ +..+|++|+|+|+
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALa  690 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDE-DEETATACAGALA  690 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999987764444 444 79999999999998 9999999999999


Q ss_pred             HHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC---ChHH
Q 035507          530 NIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA---DPKI  605 (684)
Q Consensus       530 nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~---~~~v  605 (684)
                      |++.+++.+++.+++ .|++|.|++++.+++.++++.|+|++.|++. ++.++..++.+.|++++|+++++..   ++++
T Consensus       691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~-~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i  769 (810)
T 3now_A          691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN-AGEEIAKKLFETDIMELLSGLGQLPDDTRAKA  769 (810)
T ss_dssp             HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHH
T ss_pred             HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHhCcccCcHHH
Confidence            999988899999998 8999999999999999999999999999998 4678899999999999999999755   7899


Q ss_pred             HHHHHHHHHHHHhccccc
Q 035507          606 VTVCLEGLENILKVGEAE  623 (684)
Q Consensus       606 ~~~al~~L~~il~~~~~~  623 (684)
                      +..++++|.++++++.-.
T Consensus       770 ~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          770 REVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhCCCcc
Confidence            999999999999987654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=5.1e-38  Score=335.54  Aligned_cols=368  Identities=19%  Similarity=0.201  Sum_probs=297.1

Q ss_pred             hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------HHHHHHHH
Q 035507          245 HTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDY-----------PQLQFQAA  313 (684)
Q Consensus       245 ~~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~-----------~~v~~~A~  313 (684)
                      ..+++.++.++..+.+.|.+.   ..+.|..+ +.+++.+..+++.|++|.|+++|+..+.           +++|.+|+
T Consensus        28 ~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~-~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~  103 (458)
T 3nmz_A           28 GTKVEMVYSLLSMLGTHDKDD---MSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS  103 (458)
T ss_dssp             -----------------CCHH---HHHHHHHH-HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred             CchHHHHHHHHHHhcCCCHHH---HHHHHHHH-HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence            345567899999999888773   33344332 2233555889999999999999987532           79999999


Q ss_pred             HHHHHHhcCCchhHHHHHhcCCh----------HHHHHhcCCCC--hH-----HHH-------HHHHHHHHhhCCCCCCc
Q 035507          314 WALTNIASGTSENTKVVIEHDAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAADSSGCR  369 (684)
Q Consensus       314 ~~L~~l~~~~~~~~~~i~~~g~i----------~~Li~lL~~~~--~~-----v~~-------~a~~~L~nLa~~~~~~r  369 (684)
                      |+|+||+.++++.+....+.|++          +.+++++.++.  .+     +++       +|+|+|+|++.+ +.+|
T Consensus       104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R  182 (458)
T 3nmz_A          104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHR  182 (458)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHH
Confidence            99999999999999999998888          77777777642  22     555       999999999877 6679


Q ss_pred             hhHhhcCCHHHHHHHhcc----------CCchHHHHHHHHHHHHhccCCCCCChhh--hhchHHHHHHHhcCCcHHHHHH
Q 035507          370 DLVLSEGALIPLLAQLNE----------HTELSMLRIATTTLSNLCRGKPRPLFDQ--VRPALPALAQLIHSNDEQVLTD  437 (684)
Q Consensus       370 ~~i~~~g~l~~Ll~~L~~----------~~~~~v~~~a~~~L~nL~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~~~  437 (684)
                      +.+.+.|++++|+.++..          ..+..+++.|+|+|.|||.+.+......  ..+++|.|+.+|.+++++++..
T Consensus       183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~  262 (458)
T 3nmz_A          183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV  262 (458)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHH
Confidence            999999999999999942          2346789999999999998863222222  3667999999999999999999


Q ss_pred             HHHHHHhhccCC-ChHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHHHHHHHHcCChhhHHHHH-hcCChHHHHHHhcc
Q 035507          438 ACWALFGLSGDR-NNDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIH  514 (684)
Q Consensus       438 al~~L~~L~~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~L~~lL~~  514 (684)
                      |+|+|+|++ .. +++....+.+.|+++.|+++| .+.++.++..|+.+|+|++.++++....+. ..|++|.|+.+|.+
T Consensus       263 A~~aL~nLs-~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~  341 (458)
T 3nmz_A          263 IASVLRNLS-WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY  341 (458)
T ss_dssp             HHHHHHHHT-SSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred             HHHHHHHHh-cCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999 64 567888999999999999975 557788999999999999986655555565 79999999999987


Q ss_pred             CCCh----hHHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 035507          515 NHKN----SIKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVT  587 (684)
Q Consensus       515 ~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  587 (684)
                      . +.    .+++.|+|+|.|++.   +++++++.+++.|++|.|+.+|.+++.+++++|+|+|.|++. +++++...+.+
T Consensus       342 ~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~-~~~~~~~~i~~  419 (458)
T 3nmz_A          342 R-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALWD  419 (458)
T ss_dssp             C-CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS-SCHHHHHHHHH
T ss_pred             C-CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence            7 43    499999999999996   788999999999999999999999999999999999999986 37889999999


Q ss_pred             CCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507          588 EGCIKPLCDLLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       588 ~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      .|++++|++++.+.+++++..+.++|.+++...
T Consensus       420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999865

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.4e-35  Score=329.93  Aligned_cols=403  Identities=17%  Similarity=0.167  Sum_probs=344.3

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .|.++.+++.++++++.++..|+++|.+++...+.....+++.|++|.|++++.+++ ++++..++.+|.+++.++++.+
T Consensus       100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            478999999999999999999999999999887677888889999999999999987 8999999999999999889999


Q ss_pred             HHHHhcCChHHHHHhcCCC-ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          328 KVVIEHDAVPIFVKLLASP-SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      ..+.+.|+++.|+.++.++ ....+..+..+|.+++... ..+..+.+.|+++.++.++ .+.+..+++.++|+|.+++.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            9999999999999999874 4567778899999999754 5688888999999999999 55588999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHH
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWT  484 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~  484 (684)
                      ..+..  ....+++|.+++++.+++++++..++++|++++ ..+++..+.+.+.|+++.|+.++.+  .++.++..|+++
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~  333 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence            86432  234689999999999999999999999999999 7778889999999999999999975  347899999999


Q ss_pred             HHHHHcCChh---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507          485 VGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD  561 (684)
Q Consensus       485 L~nl~~~~~~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~  561 (684)
                      |+|++.+++.   ....+.+.|++|.|+.+|.++.++.+++.|+|+|+|++.++. ..+.+.+.|++|.|++++.+++++
T Consensus       334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~  412 (529)
T 1jdh_A          334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHH
Confidence            9999886543   356788999999999999988346999999999999998654 447888999999999999988899


Q ss_pred             HHHHHHHHHHH--hhcCC------------------CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          562 IKEEAAWAISN--ASSRG------------------THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       562 v~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                      ++++|+|+++|  +..++                  .++.+..+.+.|+++.|+.++.+++++++..+.+++.++...  
T Consensus       413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--  490 (529)
T 1jdh_A          413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--  490 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--
Confidence            99988888877  32222                  345556788999999999999999999999999999987632  


Q ss_pred             ccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          622 AEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       622 ~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                                  +.++..+.+.|+++.|+.|++|+|++|+++|..++.+.
T Consensus       491 ------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          491 ------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             ------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        12678899999999999999999999999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=335.62  Aligned_cols=406  Identities=18%  Similarity=0.181  Sum_probs=348.6

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .+.++.+++.|+++++.++..|+++|.++++..+.....+++.|++|.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus        97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            378999999999999999999999999999887777888889999999999999987 8899989999999998889999


Q ss_pred             HHHHhcCChHHHHHhcCCC-ChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          328 KVVIEHDAVPIFVKLLASP-SDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      ..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ ...+..+++.++|+|.++++
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999885 467889999999999965 45688899999999999999 55688999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC--CcccHhHHHHH
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP--SPSVLTPALWT  484 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~  484 (684)
                      ..+..  ....+++|.|+.++.+++++++..++++|++++ ..++...+.+.+.|+++.|+.++.+.  .+.++..|+++
T Consensus       254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~-~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence            76332  344689999999999999999999999999999 87788899999999999999999863  36899999999


Q ss_pred             HHHHHcCChh--h-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507          485 VGNIVMGDDF--Q-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD  561 (684)
Q Consensus       485 L~nl~~~~~~--~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~  561 (684)
                      |+|++...++  . ...+++.|+++.|+.+|.++.++.+++.|+|+|+|++.+... .+.+++.|++|.|++++...+.+
T Consensus       331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~  409 (644)
T 2z6h_A          331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQD  409 (644)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccchh
Confidence            9999975442  2 334778999999999998873479999999999999987544 48888999999999999876555


Q ss_pred             HHHH----------------------HHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          562 IKEE----------------------AAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       562 v~~~----------------------a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      +|++                      |+.+|.+++.  +...+..+.+.|++++|++++.+.+++++..+..+|.++...
T Consensus       410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             HTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            5554                      4555555554  345556788999999999999999999999999999998743


Q ss_pred             ccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHH------------------HHH--HHHHHHHhcCCCC
Q 035507          620 GEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEI------------------HEK--SVKILETYWCGRV  676 (684)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i------------------~~~--a~~ii~~~f~~e~  676 (684)
                                    ..++..++++|+++.|..+++++|++|                  |.+  +.++++.||..+.
T Consensus       488 --------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~~  550 (644)
T 2z6h_A          488 --------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEP  550 (644)
T ss_dssp             --------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCSC
T ss_pred             --------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCCC
Confidence                          125788999999999999999999999                  555  6778888887764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.7e-35  Score=323.92  Aligned_cols=371  Identities=25%  Similarity=0.316  Sum_probs=332.6

Q ss_pred             hhccHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507          247 KLEILPMMVAGVWSDD-NNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       247 ~~~~l~~lv~~L~s~~-~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      ..+.++.+++.|.+++ +.++..|+++|.++++..+.....+++.|++|.|+.+|.+++ +.++..|+|+|++++.+++.
T Consensus       115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~  193 (528)
T 4b8j_A          115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPK  193 (528)
T ss_dssp             HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHH
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChh
Confidence            3478999999999887 999999999999999876678888999999999999999987 89999999999999998888


Q ss_pred             hHHHHHhcCChHHHHHhc-CCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          326 NTKVVIEHDAVPIFVKLL-ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL-~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      .+..+.+.|+++.|+.+| .++++.++..|+|+|++++...+.. ......|+++.|+.++ .+.+..++..++|+|+++
T Consensus       194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l  271 (528)
T 4b8j_A          194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYL  271 (528)
T ss_dssp             HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
Confidence            999999999999999999 5688999999999999999886553 4445688999999999 677899999999999999


Q ss_pred             ccCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHH
Q 035507          405 CRGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPAL  482 (684)
Q Consensus       405 ~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al  482 (684)
                      +...+.. ......+++|.|+.++.++++.++..|+++|++++ .+++...+.+++.|+++.|+.+|.++ ++.++..|+
T Consensus       272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~  350 (528)
T 4b8j_A          272 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV-TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEAC  350 (528)
T ss_dssp             TSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH-cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHH
Confidence            9875322 23334789999999999999999999999999999 88888899999999999999999998 899999999


Q ss_pred             HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507          483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFD  561 (684)
Q Consensus       483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~  561 (684)
                      ++|+|++.+++...+.+++.|++|.|+.+|.++ ++.++..|+|+|+|++.+ ++++...+++.|+++.|+.++...+++
T Consensus       351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~  429 (528)
T 4b8j_A          351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIR  429 (528)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence            999999998888889999999999999999998 999999999999999985 789999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          562 IKEEAAWAISNASSRGTH----------DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       562 v~~~a~~aL~nl~~~~~~----------~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      ++..|+++|.+++..+..          .....+.+.|+++.+..++.+.++++...+..++.+++...+.
T Consensus       430 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~  500 (528)
T 4b8j_A          430 IVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED  500 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            999999999999874322          2566778899999999999999999999999999999876443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.2e-35  Score=334.23  Aligned_cols=404  Identities=15%  Similarity=0.120  Sum_probs=332.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHc----CCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCc
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIES----GVVPRFVEFLMRE-DYPQLQFQAAWALTNIASGTS  324 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~----g~i~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~  324 (684)
                      ++.|+.++++++..++..|+.+|+++.+... .+....++.    .+++.|+++|.++ .+++++..|+|+|.+++. ++
T Consensus       332 v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~-~~  410 (810)
T 3now_A          332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL-DA  410 (810)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT-SH
T ss_pred             cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC-Cc
Confidence            4888888888888889999999999875322 111111222    3477889999887 137999999999999998 55


Q ss_pred             hhHHHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC-----------------------------c---hh
Q 035507          325 ENTKVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC-----------------------------R---DL  371 (684)
Q Consensus       325 ~~~~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~-----------------------------r---~~  371 (684)
                      +.+..++ +.|++|.|+.+|+++++.++..|+|+|+||+.+.+..                             +   +.
T Consensus       411 ~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~  490 (810)
T 3now_A          411 ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV  490 (810)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence            5565555 6799999999999999999999999999999754211                             1   56


Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN  451 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~  451 (684)
                      +.+.|++++|+.++ .++++.++..|+|+|.|++.....+......|++|.|+.++.++++..+..|+|+|++++...++
T Consensus       491 VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p  569 (810)
T 3now_A          491 LANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP  569 (810)
T ss_dssp             HHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence            77889999999999 67889999999999999997645444555689999999999999999999999999999822233


Q ss_pred             HHHH-HHHHhchHHHHHHhcCCCCc-ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          452 DKIQ-AVIEAGVCGRLVELLGHPSP-SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       452 ~~~~-~~~~~g~l~~L~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                      ...- .....|++|.|+.+|.++.. ..+..|+++|+|++.+++...+.+++.|+++.|+.++.++ ++.+++.|+++|+
T Consensus       570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~  648 (810)
T 3now_A          570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLC  648 (810)
T ss_dssp             HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHH
T ss_pred             hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            2210 01124689999999986533 3356899999999999888899999999999999999998 9999999999999


Q ss_pred             HHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHH-CCChHHHHhhccCCChHHHH
Q 035507          530 NIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVT-EGCIKPLCDLLQCADPKIVT  607 (684)
Q Consensus       530 nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~g~l~~L~~lL~~~~~~v~~  607 (684)
                      |++.++. ....+++ .|.++.|+.++...+..++++|+|+|+|++.+ ++.+.+.+++ .|++++|++++.+++.+++.
T Consensus       649 NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~  726 (810)
T 3now_A          649 NLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQH  726 (810)
T ss_dssp             HHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHH
T ss_pred             HHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHH
Confidence            9998754 4555554 78999999999999999999999999999974 6778888888 89999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc-C--CCHHHHHHHHHHHHHhc
Q 035507          608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS-H--DNNEIHEKSVKILETYW  672 (684)
Q Consensus       608 ~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~-~--~~~~i~~~a~~ii~~~f  672 (684)
                      .+++++.++...+..             ....+.+.|+++.|.+|.. +  .++++++.|.+.++...
T Consensus       727 ~A~~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          727 RGIVIILNMINAGEE-------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             HHHHHHHHHHTTCHH-------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHH-------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            999999999974321             4688999999999999954 3  48999999999988764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.6e-34  Score=321.45  Aligned_cols=372  Identities=26%  Similarity=0.333  Sum_probs=332.4

Q ss_pred             hhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507          247 KLEILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       247 ~~~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      ..+.++.+++.|.++ ++.++..|+++|.++++..+.....+++.|++|.|+++|.+++ +.++..|+|+|.+++..++.
T Consensus       128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~  206 (530)
T 1wa5_B          128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD  206 (530)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCcc
Confidence            347899999999987 8999999999999998876667788889999999999999887 89999999999999998889


Q ss_pred             hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507          326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC  405 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~  405 (684)
                      .+..+...|+++.|+.++.++++.++..|+|+|++++.+...........++++.|+.++ .+.+..++..++|+|++++
T Consensus       207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~  285 (530)
T 1wa5_B          207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS  285 (530)
T ss_dssp             HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999987633345566688999999999 6678899999999999999


Q ss_pred             cCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507          406 RGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT  484 (684)
Q Consensus       406 ~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  484 (684)
                      ...+. .......+++|.|+.++.++++.++..++++|++++ .+++...+.+.+.|+++.|+.+|.++++.++..|+++
T Consensus       286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~a  364 (530)
T 1wa5_B          286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT  364 (530)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH-cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHH
Confidence            87532 222233689999999999999999999999999999 8888888889999999999999999999999999999


Q ss_pred             HHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-Ch--HHHHHHHHhCCHHHHHHHhccCCHh
Q 035507          485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NR--EQIQAVIDAGLIGPLVNLLQNAEFD  561 (684)
Q Consensus       485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~g~l~~Li~ll~~~~~~  561 (684)
                      |++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ ++  ++...+++.|++|.|+.++...+++
T Consensus       365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  443 (530)
T 1wa5_B          365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR  443 (530)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence            9999998888888899999999999999988 999999999999999874 55  7888999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          562 IKEEAAWAISNASSRGTH----------DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       562 v~~~a~~aL~nl~~~~~~----------~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      ++..|+++|.+++..+..          ..+..+.+.|+++.|..++.+++++++..+..+|.+++...+.
T Consensus       444 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~  514 (530)
T 1wa5_B          444 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  514 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence            999999999999874322          2456788999999999999999999999999999999976543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=6.7e-35  Score=317.63  Aligned_cols=368  Identities=24%  Similarity=0.322  Sum_probs=328.1

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          249 EILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       249 ~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      +.++.+++.++++ ++.++..|+++|.+++...++....+++.|++|.|+++|++++ +.+|..|+++|++++.++++.+
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~  142 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCR  142 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHH
Confidence            6899999999998 8999999999999999876667777889999999999999987 9999999999999999888899


Q ss_pred             HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 035507          328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLC  405 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~  405 (684)
                      ..+++.|+++.|+.++.+ ++..++..|+|+|++++.+. +..+..+ ..++++.|+..+ .+.+..++..++|+|++++
T Consensus       143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~  220 (450)
T 2jdq_A          143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLS  220 (450)
T ss_dssp             HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHH
Confidence            999999999999999996 78999999999999999765 4433333 378899999999 5678899999999999999


Q ss_pred             cCCC-CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507          406 RGKP-RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT  484 (684)
Q Consensus       406 ~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  484 (684)
                      ...+ ........+++|.++.++.++++.++..++++|++++ .+.+...+.+.+.|+++.|+.++.++++.++..|+++
T Consensus       221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV-TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHh-hCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            8752 2223334789999999999999999999999999999 8888888888999999999999999999999999999


Q ss_pred             HHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHH
Q 035507          485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIK  563 (684)
Q Consensus       485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~  563 (684)
                      |++++.+++...+.+++.|++|.|+.++.++ ++.+|..|+|+|+|++.+ +++.++.+++.|++|.|++++..++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999999988888899999999999999998 999999999999999975 77888889999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          564 EEAAWAISNASSRGTH----------DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       564 ~~a~~aL~nl~~~~~~----------~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                      ..|+++|.+++..+..          .....+.+.|+++.|..++.+++++++..++.++.+++...+
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999874322          235677888999999999999999999999999999996543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=7.6e-35  Score=317.50  Aligned_cols=364  Identities=19%  Similarity=0.194  Sum_probs=304.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcC-CchhH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASG-TSENT  327 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~-~~~~~  327 (684)
                      +.++.++++|.++++++|..|+++|++++..+.+++..+++.|+||.|+++|++++ +++|..|+|+|.||+.+ +++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk  126 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNK  126 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHH
Confidence            57899999999999999999999999998877788999999999999999999988 99999999999999985 68999


Q ss_pred             HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc-----------------cCC
Q 035507          328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN-----------------EHT  389 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~-----------------~~~  389 (684)
                      ..+++.|+||.|+.+|.+ ++..++++|+++|+||+... ..+..+.. +++++|+.++.                 ...
T Consensus       127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~  204 (584)
T 3l6x_A          127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIE  204 (584)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCC
T ss_pred             HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHh-ccHHHHHHHHhcccccccccccccccccccc
Confidence            999999999999999997 67899999999999999854 45777775 57999999762                 123


Q ss_pred             chHHHHHHHHHHHHhccCCCC-CChh-hhhchHHHHHHHhcC------CcHHHHHHHHHHHHhhccCCCh----------
Q 035507          390 ELSMLRIATTTLSNLCRGKPR-PLFD-QVRPALPALAQLIHS------NDEQVLTDACWALFGLSGDRNN----------  451 (684)
Q Consensus       390 ~~~v~~~a~~~L~nL~~~~~~-~~~~-~~~~~l~~L~~lL~~------~d~~v~~~al~~L~~L~~~~~~----------  451 (684)
                      +..++.+|+++|.||+...+. +... ...++++.|+.++.+      .+...+++|+++|.||+ ....          
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs-~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS-YQVHREIPQAERYQ  283 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH-TTHHHHSTTCCC--
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh-ccccccccchhhhh
Confidence            679999999999999987633 2222 236778899999874      56789999999999999 4311          


Q ss_pred             ---------------HHHHHHHHhchHHHHHHhcC-CCCcccHhHHHHHHHHHHcCChh---hHH-HHHhcCChHHHHHH
Q 035507          452 ---------------DKIQAVIEAGVCGRLVELLG-HPSPSVLTPALWTVGNIVMGDDF---QTQ-CIINHGAVPCLLAL  511 (684)
Q Consensus       452 ---------------~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~---~~~-~~i~~g~l~~L~~l  511 (684)
                                     ...+.+.+.++++.++.+|. +.++.+++.|+++|.|++.+...   ..+ .+.+.+++|.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                           01122234466788899995 46789999999999999987632   223 33456889999999


Q ss_pred             hccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--------CHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507          512 LIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--------EFDIKEEAAWAISNASSRGTHDQIK  583 (684)
Q Consensus       512 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--------~~~v~~~a~~aL~nl~~~~~~~~~~  583 (684)
                      |.++ +..+++.|+|+|+|++.+..  .+.++..|++|.|+++|..+        +.+++..|+++|.|++. +++++.+
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a-~~~~~~~  439 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR--NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA-ENLEAAK  439 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh--HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc-CCHHHHH
Confidence            9999 99999999999999998653  23456889999999999876        46788999999999987 4789999


Q ss_pred             HHHHCCChHHHHhhccCC--ChHHHHHHHHHHHHHHhcc
Q 035507          584 YLVTEGCIKPLCDLLQCA--DPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       584 ~l~~~g~l~~L~~lL~~~--~~~v~~~al~~L~~il~~~  620 (684)
                      .+.+.|+++.|++++.+.  .+.+...|.++|.++..+.
T Consensus       440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence            999999999999999986  8899999999999998643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.1e-32  Score=316.03  Aligned_cols=402  Identities=18%  Similarity=0.179  Sum_probs=343.0

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .+.++.+++.|+++++.++..|+++|.+++.........+.+.|+++.|+++|.+++ ..++..|+.+|.+++.++++.+
T Consensus       233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            478999999999999999999999999999887677778889999999999999877 8999999999999998889999


Q ss_pred             HHHHhcCChHHHHHhcCCCC-hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          328 KVVIEHDAVPIFVKLLASPS-DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      ..+.+.|+++.|+.++.+++ ...++.++.+|.+++... ..+..+...|+++.|+.++ .+.+..+++.++|+|.+++.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            99999999999999998854 456778999999999754 4578888999999999999 55678899999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-C-cccHhHHHHH
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-S-PSVLTPALWT  484 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~-~~v~~~al~~  484 (684)
                      ..+.  .....+++|.|+.++.+.++.++..|+++|++++ ..++...+.+.+.|+++.|+.+|.+. + +.++..|+++
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a  466 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  466 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence            8633  2234689999999999999999999999999999 88888899999999999999999763 3 3899999999


Q ss_pred             HHHHHcCChh---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHh
Q 035507          485 VGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD  561 (684)
Q Consensus       485 L~nl~~~~~~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~  561 (684)
                      |+|++..+++   ....+.+.|+++.|+.+|.++.++.++++|+|+|+|++.+. .....+.+.|++|.|++++.+++.+
T Consensus       467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~  545 (780)
T 2z6g_A          467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQD  545 (780)
T ss_dssp             HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchh
Confidence            9999876543   23467889999999999998834599999999999999865 4457888999999999999775544


Q ss_pred             ----------------------HHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          562 ----------------------IKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       562 ----------------------v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                                            ++..|+.+|.+++.  +++.+..+.+.|++++|+.++.+.++.++..+..+|.++...
T Consensus       546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  623 (780)
T ss_dssp             HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence                                  45556666677764  466667788999999999999999999999999999998632


Q ss_pred             ccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          620 GEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                                    ..+...+.+.|+++.|..|+++++++|++.|...+.+..
T Consensus       624 --------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~  662 (780)
T 2z6g_A          624 --------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  662 (780)
T ss_dssp             --------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                          126788999999999999999999999666555544443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=8.5e-34  Score=302.97  Aligned_cols=328  Identities=17%  Similarity=0.178  Sum_probs=280.3

Q ss_pred             hhhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCH----------HHHHHhhcCC
Q 035507          246 TKLEILPMMVAGVWSD------------DNNLQLEATTQFQKLLSIESMPIEEVIESGVV----------PRFVEFLMRE  303 (684)
Q Consensus       246 ~~~~~l~~lv~~L~s~------------~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i----------~~Lv~lL~~~  303 (684)
                      .+.|.+|.++++|+..            ++++++.|+|+|.++++..++..+...+.|++          +.+++++.+.
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            4578999999999963            37999999999999999998888888888888          7778888764


Q ss_pred             C-CHH-----HHH-------HHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-----------CChHHHHHHHHHHH
Q 035507          304 D-YPQ-----LQF-------QAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-----------PSDDVREQAVWALG  359 (684)
Q Consensus       304 ~-~~~-----v~~-------~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-----------~~~~v~~~a~~~L~  359 (684)
                      . ..+     ++.       +|+|+|.|++. ++++|..+++.|+++.|+.+|..           .++.+++.|+|+|.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~  225 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT  225 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence            2 112     444       99999999977 69999999999999999999942           34679999999999


Q ss_pred             HhhCCCCCCchhHh-hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHh-cCCcHHHH
Q 035507          360 NVAADSSGCRDLVL-SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLI-HSNDEQVL  435 (684)
Q Consensus       360 nLa~~~~~~r~~i~-~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v~  435 (684)
                      ||+.+.+..+..+. ..|++++|+.+| .+.+.+++..|+|+|+||+...  ..+......|++|.|+++| .+.++.++
T Consensus       226 nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          226 NLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            99988765566664 456699999999 5788999999999999999852  2223334479999999975 56789999


Q ss_pred             HHHHHHHHhhccCCChHHHHHHH-HhchHHHHHHhcCCCCcc----cHhHHHHHHHHHHc---CChhhHHHHHhcCChHH
Q 035507          436 TDACWALFGLSGDRNNDKIQAVI-EAGVCGRLVELLGHPSPS----VLTPALWTVGNIVM---GDDFQTQCIINHGAVPC  507 (684)
Q Consensus       436 ~~al~~L~~L~~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~----v~~~al~~L~nl~~---~~~~~~~~~i~~g~l~~  507 (684)
                      ..++.+|++|+ ...++....+. ..|+++.|+.+|.+.++.    ++..|+++|.|++.   +++++++.+++.|++|.
T Consensus       305 ~~A~~aL~nLs-~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~  383 (458)
T 3nmz_A          305 KSVLSALWNLS-AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT  383 (458)
T ss_dssp             HHHHHHHHHHH-HHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHc-cCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence            99999999999 53555555555 789999999999887653    89999999999997   78889999999999999


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507          508 LLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG  577 (684)
Q Consensus       508 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~  577 (684)
                      |+.+|.++ +..++++|+|+|+|++.+++++++.+++.|++|.|++++..++..+++.|+|+|.|++...
T Consensus       384 Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          384 LLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999998 9999999999999999888999999999999999999999999999999999999999853

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=4.2e-33  Score=303.80  Aligned_cols=370  Identities=18%  Similarity=0.225  Sum_probs=306.6

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCC-CC
Q 035507          288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD-SS  366 (684)
Q Consensus       288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~-~~  366 (684)
                      ...+.+|.|+++|.+++ +++|..|+++|.+++.++++++..+++.|+||.|+.+|.+++..++++|+|+|.||+.. ++
T Consensus        45 ~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred             cccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence            35678999999999988 89999999999999998999999999999999999999999999999999999999985 56


Q ss_pred             CCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc------------------
Q 035507          367 GCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH------------------  428 (684)
Q Consensus       367 ~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~------------------  428 (684)
                      ..+..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|++++.                  
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence            779999999999999999976678899999999999999864 3333444678999999872                  


Q ss_pred             CCcHHHHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhcCC------CCcccHhHHHHHHHHHHcCChh-------
Q 035507          429 SNDEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELLGH------PSPSVLTPALWTVGNIVMGDDF-------  494 (684)
Q Consensus       429 ~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~-------  494 (684)
                      ..++.++..|.++|.|++ ..+++..+.+.+. |+++.|+.++.+      .+...++.|+++|.||+.....       
T Consensus       203 ~~d~~V~~nAa~~L~NLs-~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVS-SERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHT-SSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             cccHHHHHHHHHHHHHHh-cCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence            236899999999999999 7676767778875 677899999864      4667889999999999865211       


Q ss_pred             ------------------hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh---HHHH-HHHHhCCHHHHH
Q 035507          495 ------------------QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR---EQIQ-AVIDAGLIGPLV  552 (684)
Q Consensus       495 ------------------~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~-~l~~~g~l~~Li  552 (684)
                                        ..+.+.+.++++.|+.+|.+..++.+++.|+|+|.|++++..   ..++ .+.+.+++|.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                              111222335577889999654489999999999999998652   2233 334578899999


Q ss_pred             HHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--------ChHHHHHHHHHHHHHHhcccccc
Q 035507          553 NLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA--------DPKIVTVCLEGLENILKVGEAEK  624 (684)
Q Consensus       553 ~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~--------~~~v~~~al~~L~~il~~~~~~~  624 (684)
                      ++|..++.++++.|+|+|.|++.+...  . ..+..|+++.|+++|.+.        ..+++..++.+|.+++.....  
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~--~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~--  436 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDARN--K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE--  436 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTCSC--H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH--
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChhH--H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH--
Confidence            999999999999999999999985432  2 344778999999999876        367889999999999865433  


Q ss_pred             cCCCCCcchhHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCCC
Q 035507          625 NTDSDIGDINQFAQLVEEAEGLEKIENLQSHD--NNEIHEKSVKILETYWCGRV  676 (684)
Q Consensus       625 ~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~--~~~i~~~a~~ii~~~f~~e~  676 (684)
                                 ....+.+.|++..|..|..+.  .+.+.+.|..++..+|.+.+
T Consensus       437 -----------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          437 -----------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             -----------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             -----------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence                       356788999999999998765  89999999999999987654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=5.4e-32  Score=301.07  Aligned_cols=403  Identities=16%  Similarity=0.156  Sum_probs=338.3

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          249 EILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       249 ~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      +.++.+++.|.+ ++++++..|+.+|+++... +.+...+++.|++|.|+++|++++ +.++..|+++|.+++.+++..+
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchH
Confidence            578999999975 4899999999999997654 457888999999999999999988 8999999999999999777888


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..+.+.|+++.|+.++.++++.++..++.+|.+++..++..+..+.+.|+++.++.++....+......++.+|.+++..
T Consensus       137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  216 (529)
T 1jdh_A          137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence            88999999999999999999999999999999999887777888889999999999997777777888899999999976


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      ..........++++.++.++.+++++++..++|++.+++ .......   ...|+++.|++++.++++.++..|+++|++
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH-TTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh-cCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            543344445789999999999999999999999999999 5543221   123789999999999999999999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChH---HHHHHHHhCCHHHHHHHhccCC-HhH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNRE---QIQAVIDAGLIGPLVNLLQNAE-FDI  562 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~g~l~~Li~ll~~~~-~~v  562 (684)
                      ++.+++...+.+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++   ....+.+.|++|.|++++.+++ ..+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            9998888899999999999999999764 1478999999999999886433   3567889999999999999876 699


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHH----------------------HHhcc
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN----------------------ILKVG  620 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~----------------------il~~~  620 (684)
                      ++.|+|+++|++.+  ++....+.+.|+++.|++++.+.+++++..+.+++.+                      +... 
T Consensus       373 ~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~-  449 (529)
T 1jdh_A          373 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-  449 (529)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC-
Confidence            99999999999974  3445778899999999999988777777766655554                      3221 


Q ss_pred             cccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507          621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC  673 (684)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~  673 (684)
                                   ......+.+.|+++.|..+..++++++...|...+.++-.
T Consensus       450 -------------~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          450 -------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             -------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             -------------chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                         1134568889999999999999999999999998887653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.98  E-value=8.8e-31  Score=297.83  Aligned_cols=404  Identities=17%  Similarity=0.168  Sum_probs=342.5

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          249 EILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       249 ~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      +.++.+++.|.++ +++++..|+.+|+++... ..++..+++.|+++.|+++|++++ +.++..|+++|.+++..++..+
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~  133 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAK  133 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhH
Confidence            5789999999865 899999999999986654 457888899999999999999987 8999999999999999777888


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..+.+.|+++.|+.+|.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++.......++..++.+|.+++..
T Consensus       134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~  213 (644)
T 2z6h_A          134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  213 (644)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence            88999999999999999999999999999999999877677888899999999999997776778889999999999986


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      ..........++++.++.++.+.+..++..++|+|.+++ ......   ....++++.|+.++.+.++.++..|+++|++
T Consensus       214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~-~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG-GGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-hcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            544444555789999999999999999999999999999 543221   1123789999999999999999999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCC-hhHHHHHHHHHHHHhcCCh--HHH-HHHHHhCCHHHHHHHhccCC-HhH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHK-NSIKKEVSWIISNIACGNR--EQI-QAVIDAGLIGPLVNLLQNAE-FDI  562 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~--~~~-~~l~~~g~l~~Li~ll~~~~-~~v  562 (684)
                      ++.+++..++.+.+.|+++.|+.++.+..+ +.++..|+++|+|++...+  +.. ..+++.|++|.|+++|.+.+ ..+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            999888888999999999999999987423 7999999999999987533  233 34778899999999999874 799


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC----------------------hHHHHHHHHHHHHHHhcc
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD----------------------PKIVTVCLEGLENILKVG  620 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~----------------------~~v~~~al~~L~~il~~~  620 (684)
                      ++.|+|+|+|++.+  ++....+.+.|+++.|++++.+.+                      .+++..++.+|.++....
T Consensus       370 ~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            99999999999974  334477889999999999998643                      345666777777766532


Q ss_pred             cccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507          621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCG  674 (684)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~  674 (684)
                      .              ....+.+.|+++.|..+..+.++++...|...+.++..+
T Consensus       448 ~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          448 H--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             H--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             H--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            1              346788899999999999999999999999988877543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=2e-30  Score=299.57  Aligned_cols=402  Identities=17%  Similarity=0.176  Sum_probs=340.3

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          249 EILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       249 ~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      +.++.+++.|.++ +++++..|+.+|+++... ..+...+.+.|+++.|+++|++++ +.++..|+++|.+++..++..+
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~  269 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAK  269 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhH
Confidence            5789999999854 899999999999996554 456788889999999999999987 8999999999999999778889


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..+.+.|+++.|+.+|.+++..+++.++.+|.+++..++..+..+...|+++.|+.++...........++.+|.+++..
T Consensus       270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  349 (780)
T 2z6g_A          270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  349 (780)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999877777888888899999999997666667778899999999976


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      ..........++++.|+.++.+.++.++..++++|.+++ ......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~-~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHH-TTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHh-ccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            543344445789999999999999999999999999999 544321   1224789999999999999999999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCC-hhHHHHHHHHHHHHhcCChH---HHHHHHHhCCHHHHHHHhccCC-HhH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHK-NSIKKEVSWIISNIACGNRE---QIQAVIDAGLIGPLVNLLQNAE-FDI  562 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~g~l~~Li~ll~~~~-~~v  562 (684)
                      ++.+++...+.+++.|+++.|+.+|.+..+ ..++..|+++|+||+...++   ....+.+.|++|.|++++...+ ..+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999988888999999999999999976423 48999999999999875433   2346778999999999999876 499


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC----------------------hHHHHHHHHHHHHHHhcc
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD----------------------PKIVTVCLEGLENILKVG  620 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~----------------------~~v~~~al~~L~~il~~~  620 (684)
                      ++.|+|+|+|++.  .++....+.+.|+++.|++++.+.+                      .+++..++.+|.++....
T Consensus       506 ~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          506 IKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            9999999999997  4555678889999999999997644                      345666777777765321


Q ss_pred             cccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                                    .....+.+.|+++.|..+..+++++|...|...+..+.
T Consensus       584 --------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          584 --------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             --------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             --------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence                          13466888999999999999999999999998887664

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=2.4e-30  Score=280.93  Aligned_cols=323  Identities=17%  Similarity=0.182  Sum_probs=271.7

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcCCch
Q 035507          247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLM-REDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       247 ~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~-~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      ..|.+|.++++|+++++++|..|+++|++++..+++++..+++.|++|.|+++|. +++ +++++.|+|+|.|++.+ ++
T Consensus        42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~-~~  119 (457)
T 1xm9_A           42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSST-DE  119 (457)
T ss_dssp             HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTS-SS
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcC-HH
Confidence            4589999999999999999999999999999876688888999999999999999 666 89999999999999996 78


Q ss_pred             hHHHHHhcCChHHHHHhc--------CCC--------ChHHHHHHHHHHHHhhCCCCCCchhHhhc-CCHHHHHHHhccC
Q 035507          326 NTKVVIEHDAVPIFVKLL--------ASP--------SDDVREQAVWALGNVAADSSGCRDLVLSE-GALIPLLAQLNEH  388 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL--------~~~--------~~~v~~~a~~~L~nLa~~~~~~r~~i~~~-g~l~~Ll~~L~~~  388 (684)
                      .+..+++ |++|.|+.+|        .++        ++.+++.|+|+|+||+.+ +..++.+.+. |++++|+.++...
T Consensus       120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~  197 (457)
T 1xm9_A          120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNC  197 (457)
T ss_dssp             THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHH
T ss_pred             hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhh
Confidence            8998999 9999999999        332        456777999999999988 6678888887 9999999999642


Q ss_pred             -----CchHHHHHHHHHHHHhccCC--------------------------------------------------C-CCC
Q 035507          389 -----TELSMLRIATTTLSNLCRGK--------------------------------------------------P-RPL  412 (684)
Q Consensus       389 -----~~~~v~~~a~~~L~nL~~~~--------------------------------------------------~-~~~  412 (684)
                           .+..+..+++++|.|++...                                                  + ...
T Consensus       198 ~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (457)
T 1xm9_A          198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG  277 (457)
T ss_dssp             HHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGG
T ss_pred             ccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHH
Confidence                 45567889999999987310                                                  0 001


Q ss_pred             hhhhhchHHHHHHHhcC-CcHHHHHHHHHHHHhhccCCChHH---H-HHHH-HhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507          413 FDQVRPALPALAQLIHS-NDEQVLTDACWALFGLSGDRNNDK---I-QAVI-EAGVCGRLVELLGHPSPSVLTPALWTVG  486 (684)
Q Consensus       413 ~~~~~~~l~~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~---~-~~~~-~~g~l~~L~~lL~~~~~~v~~~al~~L~  486 (684)
                      .....++++.++.+|.+ .++.+++.|+|+|++++ .++...   . +.++ +.|++|.|+++|.+++..++..|+++|+
T Consensus       278 ~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~-~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~  356 (457)
T 1xm9_A          278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT-ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS  356 (457)
T ss_dssp             GGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhc-cCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHH
Confidence            11236778888988875 46999999999999999 655332   2 3344 5799999999999999999999999999


Q ss_pred             HHHcCChhhHHHHHhcCChHHHHHHhccCC-----ChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CH
Q 035507          487 NIVMGDDFQTQCIINHGAVPCLLALLIHNH-----KNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EF  560 (684)
Q Consensus       487 nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~  560 (684)
                      |++.+.  ..+.++..|++|.|+.+|.++.     +.++...++++|+|+..+++++.+.+.+.|+++.|++++.++ +.
T Consensus       357 nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~  434 (457)
T 1xm9_A          357 NMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP  434 (457)
T ss_dssp             HHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCH
T ss_pred             HHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcH
Confidence            998753  4556677799999999998762     136888999999999998889999999999999999999999 99


Q ss_pred             hHHHHHHHHHHHhhcC
Q 035507          561 DIKEEAAWAISNASSR  576 (684)
Q Consensus       561 ~v~~~a~~aL~nl~~~  576 (684)
                      ++++.|+|+|.|+...
T Consensus       435 ~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          435 KAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            9999999999999863

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=4.5e-29  Score=259.00  Aligned_cols=269  Identities=19%  Similarity=0.182  Sum_probs=233.6

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-----------CChHHHHHHHHHHHHhhCCCCCCchhHh-
Q 035507          306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-----------PSDDVREQAVWALGNVAADSSGCRDLVL-  373 (684)
Q Consensus       306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-----------~~~~v~~~a~~~L~nLa~~~~~~r~~i~-  373 (684)
                      ...+.+|+|+|.|++. ++++|..+++.|+++.|+.+|..           .++.+++.|+|+|.||+.+++..+..+. 
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3555689999999998 58999999999999999999952           2477999999999999987765566664 


Q ss_pred             hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC--CCCChhhhhchHHHHHHHh-cCCcHHHHHHHHHHHHhhccCCC
Q 035507          374 SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK--PRPLFDQVRPALPALAQLI-HSNDEQVLTDACWALFGLSGDRN  450 (684)
Q Consensus       374 ~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~  450 (684)
                      ..|++++|+.+| .+.+.+++..|+|+|.||+...  ..+......|++|.|+++| .+.+++++..++++|++++ ...
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs-~~~  202 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS-AHC  202 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-TTC
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH-ccC
Confidence            456699999999 6788999999999999999862  2233344579999999975 6678999999999999999 646


Q ss_pred             hHHHHHHH-HhchHHHHHHhcCCCCc----ccHhHHHHHHHHHHc---CChhhHHHHHhcCChHHHHHHhccCCChhHHH
Q 035507          451 NDKIQAVI-EAGVCGRLVELLGHPSP----SVLTPALWTVGNIVM---GDDFQTQCIINHGAVPCLLALLIHNHKNSIKK  522 (684)
Q Consensus       451 ~~~~~~~~-~~g~l~~L~~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~  522 (684)
                      ++....+. ..|+++.|+.+|.++++    .++..|+++|.|++.   +++++++.+.+.|++|.|+.+|.++ +..+++
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~  281 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVS  281 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHH
Confidence            56555565 78999999999988665    389999999999997   6888899999999999999999998 999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC
Q 035507          523 EVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT  578 (684)
Q Consensus       523 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~  578 (684)
                      +|+|+|+|++.+++++++.+++.|++|.|++++.+++..+++.|+|+|.|++.+..
T Consensus       282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999998889999999999999999999999999999999999999998643

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=1.6e-28  Score=254.93  Aligned_cols=274  Identities=20%  Similarity=0.205  Sum_probs=238.5

Q ss_pred             CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc----------CCchHHHHHHHHHHHHhccCCCCCChhh
Q 035507          346 PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE----------HTELSMLRIATTTLSNLCRGKPRPLFDQ  415 (684)
Q Consensus       346 ~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~----------~~~~~v~~~a~~~L~nL~~~~~~~~~~~  415 (684)
                      +......+|+|+|+|++.+ ++.|+.+.+.|++++|+.+|..          ..++.+++.|+|+|.|||.+........
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4446667999999999998 4679999999999999999942          1346799999999999998863222222


Q ss_pred             --hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC-ChHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHHHHHHHHcC
Q 035507          416 --VRPALPALAQLIHSNDEQVLTDACWALFGLSGDR-NNDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALWTVGNIVMG  491 (684)
Q Consensus       416 --~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~  491 (684)
                        ..+++|.|+.+|.+++++++..++|+|.+++ .. +++....+.+.|++|.|+++| .+.++.++..|+.+|+|++.+
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs-~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLS-WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH-TTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHh-ccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence              3567999999999999999999999999999 64 567888899999999999974 667888999999999999987


Q ss_pred             ChhhHHHHH-hcCChHHHHHHhccCCCh----hHHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHHHhccCCHhHH
Q 035507          492 DDFQTQCII-NHGAVPCLLALLIHNHKN----SIKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVNLLQNAEFDIK  563 (684)
Q Consensus       492 ~~~~~~~~i-~~g~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~  563 (684)
                      +++....+. ..|++|.|+.+|.++ ++    .+++.|+|+|.|++.   +++++++.+.+.|++|.|+.+|.+++.+++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~  280 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV  280 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence            766655666 789999999999876 43    599999999999997   788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          564 EEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       564 ~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      ++|+|+|.|++. +++++...+.+.|++++|++++.+.+++++..+.++|.+++...+..
T Consensus       281 ~~A~~aL~nLa~-~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          281 SNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHHHHTS-SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHhC-CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999986 47889999999999999999999999999999999999999875543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=1.3e-25  Score=223.92  Aligned_cols=240  Identities=27%  Similarity=0.392  Sum_probs=222.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      |.+|.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..++
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57899999999988 99999999999999998888999999999999999999999999999999999999998788889


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR  449 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~  449 (684)
                      .+.+.|+++.++.++ .+.+..++..++|+|.+++... .........+++|.+++++.++++.++..++++|++++ ..
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~-~~  158 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SG  158 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TS
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-cC
Confidence            999999999999999 5678999999999999999754 33333444789999999999999999999999999999 77


Q ss_pred             ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       450 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                      ++...+.+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++ ++.+++.|+|+|+
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~  237 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALE  237 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence            888888999999999999999999999999999999999998888899999999999999999998 9999999999999


Q ss_pred             HHhcC
Q 035507          530 NIACG  534 (684)
Q Consensus       530 nl~~~  534 (684)
                      |++..
T Consensus       238 ~l~~~  242 (252)
T 4hxt_A          238 NIKSG  242 (252)
T ss_dssp             HHHHT
T ss_pred             HHHcC
Confidence            99874

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.94  E-value=1.9e-25  Score=225.50  Aligned_cols=236  Identities=17%  Similarity=0.154  Sum_probs=203.2

Q ss_pred             cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH-hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHH
Q 035507          431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE-LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL  509 (684)
Q Consensus       431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~  509 (684)
                      +.+-+..|+..|.+++ . +.++...+.+.|+++.|+. +|.++++.++..|+++|++++.+++..++.+++.|++|.|+
T Consensus        53 ~~e~k~~Al~~L~~lv-~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll  130 (296)
T 1xqr_A           53 DQQEREGALELLADLC-E-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  130 (296)
T ss_dssp             HHHHHHHHHHHHHHHH-T-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-h-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence            3467888999999999 4 5567777889999999999 99999999999999999999999998999999999999999


Q ss_pred             HHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 035507          510 ALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEG  589 (684)
Q Consensus       510 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g  589 (684)
                      .+|.++.+..+++.|+|+|+|++.+++...+.+.+.|++|.|+.++.+++..++..|+|+|++++.+ +++.+..+++.|
T Consensus       131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g  209 (296)
T 1xqr_A          131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMG  209 (296)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTT
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcC
Confidence            9998643789999999999999999989899999999999999999999999999999999999985 678889999999


Q ss_pred             ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHH
Q 035507          590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD-NNEIHEKSVKIL  668 (684)
Q Consensus       590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~-~~~i~~~a~~ii  668 (684)
                      ++++|+.+|.+++++++..++.+|.+++...........  ...+.+...+++     .++.++.|+ +.++|++|..|+
T Consensus       210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il  282 (296)
T 1xqr_A          210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLL  282 (296)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987543211000  011336667765     378888776 799999999999


Q ss_pred             HHhcCCCC
Q 035507          669 ETYWCGRV  676 (684)
Q Consensus       669 ~~~f~~e~  676 (684)
                      ++||.+++
T Consensus       283 ~~~f~~~~  290 (296)
T 1xqr_A          283 QTCFSSPA  290 (296)
T ss_dssp             HHHCC---
T ss_pred             HHHcCCCC
Confidence            99997654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=6.1e-25  Score=218.99  Aligned_cols=241  Identities=27%  Similarity=0.402  Sum_probs=223.2

Q ss_pred             CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCC
Q 035507          334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPL  412 (684)
Q Consensus       334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~  412 (684)
                      |.++.|+.+|.++++.++..|+++|++++...+..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++... ....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            5689999999999999999999999999988877788889999999999999 5667999999999999999874 3334


Q ss_pred             hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507          413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD  492 (684)
Q Consensus       413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  492 (684)
                      .....++++.++.++.+++++++..++++|++++ ..+++....+.+.|+++.|++++.++++.++..|+++|++++.+.
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            4445789999999999999999999999999999 888889999999999999999999999999999999999999988


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507          493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN  572 (684)
Q Consensus       493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n  572 (684)
                      +...+.+++.|+++.|+.++.++ ++.++..|+++|+|++.+++...+.+.+.|+++.|++++.+++++++..|+++|.|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            88888999999999999999988 99999999999999999888999999999999999999999999999999999999


Q ss_pred             hhcCC
Q 035507          573 ASSRG  577 (684)
Q Consensus       573 l~~~~  577 (684)
                      +....
T Consensus       239 l~~~~  243 (252)
T 4hxt_A          239 IKSGG  243 (252)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            98744

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=1.3e-25  Score=224.15  Aligned_cols=239  Identities=34%  Similarity=0.510  Sum_probs=219.7

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      ...+.++.+|.+++ +++|..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45789999999988 89999999999887776788888999999999999999999999999999999999988777889


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR  449 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~  449 (684)
                      .+.+.|+++.|+.++ .+++..++..++|+|++++...+.. ......+++|.+++++.++++.++..++++|++++ ..
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~  168 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SG  168 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TS
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-cC
Confidence            999999999999999 5578999999999999999886444 44555889999999999999999999999999999 87


Q ss_pred             ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       450 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                      ++...+.+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+++.|+++.|+.++.++ ++.+++.|+|+|+
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~  247 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE  247 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHH
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            888888899999999999999999999999999999999998988899999999999999999998 9999999999999


Q ss_pred             HHhc
Q 035507          530 NIAC  533 (684)
Q Consensus       530 nl~~  533 (684)
                      |++.
T Consensus       248 ~l~~  251 (252)
T 4db8_A          248 KLQS  251 (252)
T ss_dssp             TTC-
T ss_pred             HHhc
Confidence            9974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=1.6e-25  Score=223.55  Aligned_cols=238  Identities=35%  Similarity=0.508  Sum_probs=217.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.+++.|+++|++++..|+++|+++++...+++..+++.|++|.|+++|++++ +.++..|+++|.+++.++++.+..
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5789999999999999999999999988876678888999999999999999988 999999999999999989999999


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      +++.|+++.|+.+|.++++.+++.|+++|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|++++...+
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCh
Confidence            99999999999999999999999999999999988765337788999999999999 66788999999999999998752


Q ss_pred             C-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          410 R-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       410 ~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                      . .......+++|.|+.++.++++.++..++++|++++ ..++...+.+.+.|+++.|+.++.++++.++..|+++|+|+
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            2 223334899999999999999999999999999999 88888999999999999999999999999999999999998


Q ss_pred             Hc
Q 035507          489 VM  490 (684)
Q Consensus       489 ~~  490 (684)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            74

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-22  Score=224.28  Aligned_cols=363  Identities=13%  Similarity=0.093  Sum_probs=283.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.|...+++  ..++..|+..|+++.+........+.  ...+.+.++|.+++ .+.+..|++.|..++. +++.+..
T Consensus       297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~  370 (778)
T 3opb_A          297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIM  370 (778)
T ss_dssp             HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHH
T ss_pred             HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHH
Confidence            45777777765  47888999999998776542211111  26688889998876 5669999999999998 7777777


Q ss_pred             HHhc-CChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCC--------------------------------------Cc
Q 035507          330 VIEH-DAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSG--------------------------------------CR  369 (684)
Q Consensus       330 i~~~-g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~--------------------------------------~r  369 (684)
                      +.+. |+++.|+.++.+ .+..+...++.+|.|++.+.+.                                      .+
T Consensus       371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~  450 (778)
T 3opb_A          371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE  450 (778)
T ss_dssp             HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence            7754 679999999995 7788999999999999975432                                      23


Q ss_pred             hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHH---HHHHHHHHHHhhc
Q 035507          370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQ---VLTDACWALFGLS  446 (684)
Q Consensus       370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~al~~L~~L~  446 (684)
                      ..+.+.|++++|+.++ .+.++.++..++|+|.+++.....+......|+++.|++++.+....   .+..|+++|++++
T Consensus       451 ~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl  529 (778)
T 3opb_A          451 KYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML  529 (778)
T ss_dssp             HHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence            4567889999999988 66788999999999999998766566666689999999999877544   8999999999998


Q ss_pred             cCCChHHHH-HHHHhchHHHHHHhcCC-CCcc-------------cHhHHHHHHHHHHcCCh----hhHHHHHhc-CChH
Q 035507          447 GDRNNDKIQ-AVIEAGVCGRLVELLGH-PSPS-------------VLTPALWTVGNIVMGDD----FQTQCIINH-GAVP  506 (684)
Q Consensus       447 ~~~~~~~~~-~~~~~g~l~~L~~lL~~-~~~~-------------v~~~al~~L~nl~~~~~----~~~~~~i~~-g~l~  506 (684)
                      ...++...- .....|+++.|+.+|.. +...             -+..|+.+|.|++..++    +.++.++.. |+++
T Consensus       530 is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~  609 (778)
T 3opb_A          530 IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS  609 (778)
T ss_dssp             HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHH
T ss_pred             hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHH
Confidence            223332210 00013899999999983 2211             16799999999999873    346778885 9999


Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHHhcCChHHH-HHHHH------hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCH
Q 035507          507 CLLALLIHNHKNSIKKEVSWIISNIACGNREQI-QAVID------AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTH  579 (684)
Q Consensus       507 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~------~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~  579 (684)
                      .|..+|.++ +..+|++|+++++|++... +.+ +.+.+      .+-++.|+.++..++.++|+.|+|||.|++.+ .+
T Consensus       610 ~L~~LL~s~-n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~  686 (778)
T 3opb_A          610 TIENLMLDE-NVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IP  686 (778)
T ss_dssp             HHHHGGGCS-SHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CH
T ss_pred             HHHHHHhCC-CHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-Ch
Confidence            999999988 9999999999999999743 443 33432      12488999999999999999999999999752 56


Q ss_pred             HHHHHHHHC-CChHHHHhhccC--CChHHHHHHHHHHHHHHhcccc
Q 035507          580 DQIKYLVTE-GCIKPLCDLLQC--ADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       580 ~~~~~l~~~-g~l~~L~~lL~~--~~~~v~~~al~~L~~il~~~~~  622 (684)
                      ..++.+++. ++++.+++++..  ++++++..++.++.+++.+...
T Consensus       687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~  732 (778)
T 3opb_A          687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPD  732 (778)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhcc
Confidence            677788776 799999999998  8999999999999999986543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.5e-23  Score=227.46  Aligned_cols=322  Identities=12%  Similarity=0.155  Sum_probs=258.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHH-cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch---
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIE-SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE---  325 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~-~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~---  325 (684)
                      ..+.+++.+.+++.+.+..|+..|..+ +..+..++.+++ .|+++.|++++++..+..+...++.+|.|++...+.   
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~  413 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYL-SLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX  413 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHH-hCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence            568888888888877799999999885 444445555554 467999999999633378999999999999984321   


Q ss_pred             -----------------------------------hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          326 -----------------------------------NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       326 -----------------------------------~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                                                         .+..+.+.|++|.|+.++.++++.+++.|+|+|+||+.+ +..|.
T Consensus       414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~  492 (778)
T 3opb_A          414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIP  492 (778)
T ss_dssp             CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHH
T ss_pred             hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHH
Confidence                                               356778899999999999999999999999999999977 56799


Q ss_pred             hHhhcCCHHHHHHHhccCCch--HHHHHHHHHHHHhccCC-CCCChh--hhhchHHHHHHHhcC-CcH------------
Q 035507          371 LVLSEGALIPLLAQLNEHTEL--SMLRIATTTLSNLCRGK-PRPLFD--QVRPALPALAQLIHS-NDE------------  432 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~--~v~~~a~~~L~nL~~~~-~~~~~~--~~~~~l~~L~~lL~~-~d~------------  432 (684)
                      .+.+.|++++|+.++...++.  ..+..|+++|.+++... |...+.  ...+++|.|+.+|.. +..            
T Consensus       493 ~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~  572 (778)
T 3opb_A          493 QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK  572 (778)
T ss_dssp             HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCC
T ss_pred             HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccccc
Confidence            999999999999999665443  37899999999998654 211110  114899999999983 211            


Q ss_pred             -HHHHHHHHHHHhhccCCC----hHHHHHHHHh-chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcC---
Q 035507          433 -QVLTDACWALFGLSGDRN----NDKIQAVIEA-GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHG---  503 (684)
Q Consensus       433 -~v~~~al~~L~~L~~~~~----~~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g---  503 (684)
                       --+..|+.+|.||+ ..+    ++....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.+   
T Consensus       573 ~l~~feAL~ALTNLA-s~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          573 LTDNYEALLALTNLA-SSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             HHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             HHHHHHHHHHHHHHh-cCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence             12779999999999 654    2345667884 9999999999999999999999999999975542223343222   


Q ss_pred             ---ChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh-CCHHHHHHHhcc--CCHhHHHHHHHHHHHhhc
Q 035507          504 ---AVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA-GLIGPLVNLLQN--AEFDIKEEAAWAISNASS  575 (684)
Q Consensus       504 ---~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-g~l~~Li~ll~~--~~~~v~~~a~~aL~nl~~  575 (684)
                         .++.|+.++... +.++|++|+|+|+|++.+.+...+.+++. ++++.++.++.+  ++.+++..++.++.|++.
T Consensus       652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence               378899999888 99999999999999988777888888876 799999999999  899999999999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=1.2e-21  Score=189.48  Aligned_cols=200  Identities=39%  Similarity=0.569  Sum_probs=187.2

Q ss_pred             hhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhh
Q 035507          416 VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ  495 (684)
Q Consensus       416 ~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  495 (684)
                      ..+..|.+..++.++|++++..|+++|.+++ ..+++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            3677889999999999999999999999999 888899999999999999999999999999999999999999989889


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      .+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++..+.+++.|++|.|++++.+++.+++..|+++|.|++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999 99999999999999999888999999999999999999999999999999999999998


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507          576 RGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       576 ~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~  618 (684)
                      . +++....+.+.|+++.|..++.+.+++++..+.++|.++..
T Consensus       168 ~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 G-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             S-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             C-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            4 47788888999999999999999999999999999998753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=2.5e-21  Score=187.24  Aligned_cols=201  Identities=35%  Similarity=0.551  Sum_probs=173.2

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507          288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      ...|..+.|+.+|.+++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.+++.|+++|+|++.+.+.
T Consensus         9 ~~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            34678999999999988 89999999999999988999999999999999999999999999999999999999976655


Q ss_pred             CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 035507          368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG  447 (684)
Q Consensus       368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~  447 (684)
                      .++.+.+.|+++.++.++                                          .++++.++..++++|++++ 
T Consensus        88 ~~~~i~~~g~i~~L~~lL------------------------------------------~~~~~~v~~~a~~~L~~l~-  124 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLL------------------------------------------SSPNEQILQEALWALSNIA-  124 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHT------------------------------------------TCSCHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHCCCHHHHHHHH------------------------------------------cCCcHHHHHHHHHHHHHHH-
Confidence            555555555555555554                                          4556667777777777777 


Q ss_pred             CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507          448 DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI  527 (684)
Q Consensus       448 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~  527 (684)
                      ..+++..+.+.+.|+++.|+.++.++++.++..|+++|+|++..++.....+.+.|+++.|+.++.++ ++.+++.|+++
T Consensus       125 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~a  203 (210)
T 4db6_A          125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEA  203 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHH
Confidence            66677777888999999999999999999999999999999998888888999999999999999988 99999999999


Q ss_pred             HHHHhc
Q 035507          528 ISNIAC  533 (684)
Q Consensus       528 L~nl~~  533 (684)
                      |.+++.
T Consensus       204 L~~l~~  209 (210)
T 4db6_A          204 LEKLQS  209 (210)
T ss_dssp             HHHHCC
T ss_pred             HHHHhc
Confidence            999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=4.5e-21  Score=193.55  Aligned_cols=189  Identities=16%  Similarity=0.151  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHH
Q 035507          306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ  384 (684)
Q Consensus       306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~  384 (684)
                      .+-+..|+..|.+++. +.++...++..|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+.+.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678889999999998 6678888899999999999 9999999999999999999999999899999999999999999


Q ss_pred             hccCCchHHHHHHHHHHHHhccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH
Q 035507          385 LNEHTELSMLRIATTTLSNLCRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC  463 (684)
Q Consensus       385 L~~~~~~~v~~~a~~~L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l  463 (684)
                      |..+++..+++.|+|+|++++++.+. .......+++|.|+.++.+++..++..|+|+|++++ .++++.++.+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~-~~~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL-VGHPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHCGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH-hCChHHHHHHHHcCCH
Confidence            96666889999999999999998633 223334789999999999999999999999999999 7788899999999999


Q ss_pred             HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhH
Q 035507          464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT  496 (684)
Q Consensus       464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  496 (684)
                      +.|+.+|.+++..++..|+++|++++.+.+...
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~  244 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV  244 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence            999999999999999999999999998865433

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.82  E-value=3.2e-20  Score=179.01  Aligned_cols=194  Identities=18%  Similarity=0.195  Sum_probs=166.3

Q ss_pred             cHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          250 ILPMMVAGVWSDDN--NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       250 ~l~~lv~~L~s~~~--~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .+|.++++|.++++  ++|..|++++++++..+++++..+++.|+||.|+++|++++ +++|+.|+|+|.||+.++++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            68999999999988  89999999999988777778889999999999999999987 9999999999999999889999


Q ss_pred             HHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---------------cCCch
Q 035507          328 KVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---------------EHTEL  391 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---------------~~~~~  391 (684)
                      ..+++.|+||.|+.+|. +++.+++++|+.+|+||+.... .+..+.+ +++++|+.++.               ...+.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence            99999999999999998 5789999999999999997764 4666665 46899887653               11367


Q ss_pred             HHHHHHHHHHHHhccCC-CCCChhh-hhchHHHHHHHhcC------CcHHHHHHHHHHHHhhc
Q 035507          392 SMLRIATTTLSNLCRGK-PRPLFDQ-VRPALPALAQLIHS------NDEQVLTDACWALFGLS  446 (684)
Q Consensus       392 ~v~~~a~~~L~nL~~~~-~~~~~~~-~~~~l~~L~~lL~~------~d~~v~~~al~~L~~L~  446 (684)
                      .++++|+++|.||+... ..+.... ..|+++.|+.+++.      .+...+++++.+|.||+
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs  228 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS  228 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence            99999999999999865 2222222 36788999999874      36789999999999998

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.81  E-value=7.4e-20  Score=176.50  Aligned_cols=197  Identities=20%  Similarity=0.163  Sum_probs=171.3

Q ss_pred             CHHHHHHhhcCCCCH--HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507          292 VVPRFVEFLMREDYP--QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR  369 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~--~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r  369 (684)
                      .+|.++++|.+++ +  ++|..|+++|.+++.++++.+..+++.|+||.|+++|.++++.+++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999887 5  899999999999998889999999999999999999999999999999999999999877789


Q ss_pred             hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc----------------CCcHH
Q 035507          370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH----------------SNDEQ  433 (684)
Q Consensus       370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~----------------~~d~~  433 (684)
                      ..+.+.|++++|+.+|..+.+.++++.++.+|+||+.....+ .....+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            999999999999999966678899999999999999775332 3344568899887653                13679


Q ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhcCC------CCcccHhHHHHHHHHHHcC
Q 035507          434 VLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELLGH------PSPSVLTPALWTVGNIVMG  491 (684)
Q Consensus       434 v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~  491 (684)
                      ++.+|..+|.|++ ..+++.++.+.+. |+++.|+.+++.      .+.+.++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLs-s~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMS-SAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHT-TSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999 7677888888876 788999999864      2567889999999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.73  E-value=6.1e-16  Score=173.68  Aligned_cols=382  Identities=13%  Similarity=0.141  Sum_probs=284.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ..+|.+...++++++.++..|+.++..++...++   ......++|.+.+++++++ ..+|..|+.+|+.++.....   
T Consensus       203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---  275 (588)
T 1b3u_A          203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---  275 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---
Confidence            3678888888889999999999999887765431   1233458889999988877 79999999999999862111   


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC-CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ......+++.++.++.++++.+|..|+++|+.++...+. .+........++.+...+ ++.+..++..++++|..++..
T Consensus       276 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~  354 (588)
T 1b3u_A          276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPI  354 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHH
T ss_pred             ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHH
Confidence            122345689999999999999999999999999865432 111112234456666666 677889999999999998764


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      -+.  ......++|.+..++.+++++++..++.++..+. ......   .....++|.+..++.++++.+|..++.+++.
T Consensus       355 ~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~-~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~  428 (588)
T 1b3u_A          355 LGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN-EVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL  428 (588)
T ss_dssp             HCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH-HHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH-HhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            221  1234568899999999999999999999998887 321111   1224578899999999999999999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA  567 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~  567 (684)
                      ++..-...   .....++|.+...+.++ +..+|..|+.+++.++......   .....++|.|..++.+.+..+|..++
T Consensus       429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~  501 (588)
T 1b3u_A          429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTL  501 (588)
T ss_dssp             HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHH
T ss_pred             HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            87532111   11123678888999888 8999999999999998632111   12345889999888888999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHH
Q 035507          568 WAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLE  647 (684)
Q Consensus       568 ~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~  647 (684)
                      ++++.++.....+    .....+++.|..++++++++++..+++++..+.......            +    .....+.
T Consensus       502 ~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------------~----~~~~~~p  561 (588)
T 1b3u_A          502 FCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS------------T----LQSEVKP  561 (588)
T ss_dssp             HHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH------------H----HHHHHHH
T ss_pred             HHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh------------h----hHHHHHH
Confidence            9999998632221    123458899999999999999999999999998753211            1    1134456


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          648 KIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       648 ~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                      .|..+..+++++|+..|...+...
T Consensus       562 ~l~~l~~d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          562 ILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHh
Confidence            777788999999999999998765

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.72  E-value=9.6e-16  Score=172.04  Aligned_cols=381  Identities=12%  Similarity=0.105  Sum_probs=287.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.+.+.+.++++.++..|+.++..++....+   ......++|.+..++++++ +.+|..|+.+|..++...+.   .
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---E  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---H
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---H
Confidence            567777888899999999999999998865432   2234578899999998887 89999999999999874332   1


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      .....++|.+..++.++++.+|..++.+|+.++.....   .......++.++..+ ++++..++..+++++..++...+
T Consensus       238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~  313 (588)
T 1b3u_A          238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhC
Confidence            22235788889999999999999999999999853211   112234577777777 67788999999999999998753


Q ss_pred             CCCh--hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          410 RPLF--DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       410 ~~~~--~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      ....  .....++|.+..++.+.++.++..++++++.++ ..-..   ......++|.+..+++++++.+|..|+.+++.
T Consensus       314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~-~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS-PILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH-HHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            3211  345788999999999999999999999999988 32111   11223578899999999999999999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA  566 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a  566 (684)
                      +.......   .....++|.+..++.+. +..+|..++.+++.++.. ..+    .....++|.+...+.+.+..+|..|
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a  461 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            87643311   11235788899999888 999999999999999752 111    1122468889999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchH
Q 035507          567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL  646 (684)
Q Consensus       567 ~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~  646 (684)
                      +.+++.++....++.    ....+++.|..++.++++.++..+++++..+.......           .+     ....+
T Consensus       462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~-----~~~~~  521 (588)
T 1b3u_A          462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------IT-----TKHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HH-----HHHTH
T ss_pred             HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HH-----HHHHH
Confidence            999999987433332    12347888888888899999999999999988653211           11     12456


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507          647 EKIENLQSHDNNEIHEKSVKILETYWC  673 (684)
Q Consensus       647 ~~L~~L~~~~~~~i~~~a~~ii~~~f~  673 (684)
                      +.+..+..+++++|+..+.+.+..++.
T Consensus       522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          522 PTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence            677777788889999888888877753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.71  E-value=2e-17  Score=194.33  Aligned_cols=359  Identities=15%  Similarity=0.138  Sum_probs=255.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHH----HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEV----IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS  324 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~i----i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~  324 (684)
                      +.++.+++.+.++++..+..|+.+|..++...++....-    .-..++|.+++++++++ +.+|..|+++|.++....+
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhccc
Confidence            468999999999999999999999999876543221100    01246788888888777 8999999999998887544


Q ss_pred             hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       325 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      ...... -.++++.+..++.++++.+|..|+++|++++...+..-.... .+.++.++..+ .+.+..++..|++++..+
T Consensus       207 ~~~~~~-~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~-~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          207 QALMLH-IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRT-QDQDENVALEACEFWLTL  283 (852)
T ss_dssp             HHHHTS-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHc-cCCcHHHHHHHHHHHHHH
Confidence            221111 124678888888999999999999999999976543111111 13556666666 567889999999999999


Q ss_pred             ccCCCCCC--hhhhhchHHHHHHHhc-----------C-----------CcHHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507          405 CRGKPRPL--FDQVRPALPALAQLIH-----------S-----------NDEQVLTDACWALFGLSGDRNNDKIQAVIEA  460 (684)
Q Consensus       405 ~~~~~~~~--~~~~~~~l~~L~~lL~-----------~-----------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~  460 (684)
                      +.......  ......++|.++..+.           +           .+..++..+..++..++ ....+   .+. .
T Consensus       284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la-~~~~~---~~~-~  358 (852)
T 4fdd_A          284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA-NVYRD---ELL-P  358 (852)
T ss_dssp             TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH-HHHGG---GGH-H
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH-HhccH---HHH-H
Confidence            97641111  1123567777777762           2           12346888888888888 32221   111 2


Q ss_pred             chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHH
Q 035507          461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQ  540 (684)
Q Consensus       461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  540 (684)
                      .+++.+...+.++++.+|..|++++++++.+........+ .++++.++..+.++ ++.||..|+|++++++........
T Consensus       359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~  436 (852)
T 4fdd_A          359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPP  436 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchH
Confidence            4678888889999999999999999999988875443222 36789999999988 999999999999999863221111


Q ss_pred             HHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507          541 AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       541 ~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      ...-.++++.|++.+.+.++.++..|++++.+++.........++  .++++.|..+++..+.+....+++++..+....
T Consensus       437 ~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~  514 (852)
T 4fdd_A          437 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSV  514 (852)
T ss_dssp             TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence            111235788999999888999999999999999864433333332  346777888887777777777888888887543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.69  E-value=2.5e-15  Score=168.39  Aligned_cols=334  Identities=16%  Similarity=0.147  Sum_probs=239.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.+.+.++++|+.++-.|+.++.++...  ...     ..+++.+.+++.+++ +.+|..|++++.++...+++..  
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~-----~~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~--  156 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRVD--KIT-----EYLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV--  156 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGH-----HHHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH--
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCChH--HHH-----HHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc--
Confidence            456777778888888888888888775421  122     234678899999887 9999999999999998666533  


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                       .+.+.++.+..+|.++++.|+.+|+++|+.++.+.+..+......+.+..|+..+ ...++-.+..++.++..++..  
T Consensus       157 -~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~--  232 (591)
T 2vgl_B          157 -EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPK--  232 (591)
T ss_dssp             -HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCC--
T ss_pred             -ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCC--
Confidence             2346789999999999999999999999999988765321112223466777777 455667777777777777633  


Q ss_pred             CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC---ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHH
Q 035507          410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR---NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVG  486 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  486 (684)
                        .......+++.+..++++.++.|+..|++++.++. ..   +++..+.+. ..+.+.|+.++. +++.++..|+.+++
T Consensus       233 --~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~-~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          233 --DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL-ELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             --SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC-CSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             --ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh-hccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence              22345678888888999999999999999999987 42   233344332 345677777664 78899999999999


Q ss_pred             HHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHH
Q 035507          487 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA  566 (684)
Q Consensus       487 nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a  566 (684)
                      .++...+.....     .+..+. .+.+. +..+|..|++++.+++...  ++.     .+++.|...+.+.+.+++..+
T Consensus       308 ~i~~~~p~~~~~-----~~~~~~-~~~~d-~~~Ir~~al~~L~~l~~~~--nv~-----~iv~~L~~~l~~~d~~~r~~~  373 (591)
T 2vgl_B          308 LIVQKRPEILKQ-----EIKVFF-VKYND-PIYVKLEKLDIMIRLASQA--NIA-----QVLAELKEYATEVDVDFVRKA  373 (591)
T ss_dssp             HHHHHCCSTTTT-----CTTTTS-CCTTS-CHHHHHHHHHHHHHTCCSS--THH-----HHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHhChHHHHH-----HHHhhe-eccCC-hHHHHHHHHHHHHHHCChh--hHH-----HHHHHHHHHHhcCCHHHHHHH
Confidence            998765532211     111111 12244 5788999999999887542  222     256677788888889999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       567 ~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      +++++.++.... ...     ..+++.|.+++......+...++.++..++...+.
T Consensus       374 v~aI~~la~~~~-~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~  423 (591)
T 2vgl_B          374 VRAIGRCAIKVE-QSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN  423 (591)
T ss_dssp             HHHHHHHHTTCH-HHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHhCh-hHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc
Confidence            999999887542 222     22577888888888888888888888888765443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.69  E-value=5.7e-16  Score=181.88  Aligned_cols=391  Identities=14%  Similarity=0.124  Sum_probs=276.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507          253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE  332 (684)
Q Consensus       253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~  332 (684)
                      .++..+.+.++.+|..|+..|++.+...-.....-....+-+.+++.|.+++ +.+|..++.+++.++..+...    .-
T Consensus        52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~w  126 (852)
T 4fdd_A           52 FVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NW  126 (852)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TC
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----cc
Confidence            3444345778999999999999988754322222233455667788888777 899999999999999843111    12


Q ss_pred             cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh----hcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL----SEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~----~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .+.++.|+..+.++++.+++.++.+|+.++.+.+...+.-.    -...++.++..+ .+++..++..|++++.++....
T Consensus       127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~  205 (852)
T 4fdd_A          127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISR  205 (852)
T ss_dssp             TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcc
Confidence            36789999999999999999999999999976543111000    112355555555 5678899999999999888664


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                      +.........+++.+..++.+++++++..++++|..++ ....+.....++ ++++.+...+.+.++.++..|+.++..+
T Consensus       206 ~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~-~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL-EVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTL  283 (852)
T ss_dssp             CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH-HHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            32222334678888999999999999999999999999 555444333333 5788888999999999999999999998


Q ss_pred             HcCChhhHHHHHh---cCChHHHHHHh-----------cc--C--------CChhHHHHHHHHHHHHhcCChHHHHHHHH
Q 035507          489 VMGDDFQTQCIIN---HGAVPCLLALL-----------IH--N--------HKNSIKKEVSWIISNIACGNREQIQAVID  544 (684)
Q Consensus       489 ~~~~~~~~~~~i~---~g~l~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  544 (684)
                      +.... .. ..+.   ..++|.++..+           .+  .        .+..+|+.|+.++..++...++.   ++ 
T Consensus       284 ~~~~~-~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-  357 (852)
T 4fdd_A          284 AEQPI-CK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-  357 (852)
T ss_dssp             TTSTT-HH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred             hcchh-HH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-
Confidence            86432 11 1221   13466666666           22  0        13468999999999998643222   12 


Q ss_pred             hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccc
Q 035507          545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEK  624 (684)
Q Consensus       545 ~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~  624 (684)
                      ..++|.+...+.+.++.+|..|++++++++.+.......+  -.++++.+..+++++++.++..+.+++.++........
T Consensus       358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~  435 (852)
T 4fdd_A          358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  435 (852)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence            2367888888888999999999999999998654322222  23478899999999999999999999999887543221


Q ss_pred             cCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          625 NTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       625 ~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      ..        .+.     .+.+..|.....++++.++..|...+..+.
T Consensus       436 ~~--------~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          436 PD--------TYL-----KPLMTELLKRILDSNKRVQEAACSAFATLE  470 (852)
T ss_dssp             TT--------TTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HH--------HHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            00        011     123455555556778999999999887764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.67  E-value=3.2e-15  Score=151.15  Aligned_cols=259  Identities=14%  Similarity=0.147  Sum_probs=204.3

Q ss_pred             HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC
Q 035507          288 IESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       288 i~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      ...+.++.|++.|.+++ +.+|..|+++|+++..           .++++.|+.++.++++.+|..|+++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            45678999999999887 8999999999999874           24688999999999999999999999998643322


Q ss_pred             CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 035507          368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG  447 (684)
Q Consensus       368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~  447 (684)
                      ..      ..++.+...+.++++..++..++++|+++....+    ......++.+..++.++++.++..++++|+++. 
T Consensus        88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~-  156 (280)
T 1oyz_A           88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN-  156 (280)
T ss_dssp             HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-
Confidence            10      1122333333467889999999999999975431    123467899999999999999999999999987 


Q ss_pred             CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507          448 DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI  527 (684)
Q Consensus       448 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~  527 (684)
                      .           .+.++.|+.++.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3           2478999999999999999999999999854333         2567889999888 99999999999


Q ss_pred             HHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChHHH
Q 035507          528 ISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPKIV  606 (684)
Q Consensus       528 L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~  606 (684)
                      |+++..           ...++.|+..+.+++  ++..|+++|+.+-.   +         .+++.|..++.. .+++++
T Consensus       216 L~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~  270 (280)
T 1oyz_A          216 LSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII  270 (280)
T ss_dssp             HHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred             HHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence            999862           247889999997654  88999999998843   1         367788888864 577888


Q ss_pred             HHHHHHHHH
Q 035507          607 TVCLEGLEN  615 (684)
Q Consensus       607 ~~al~~L~~  615 (684)
                      ..+++.+.+
T Consensus       271 ~~~~~~l~~  279 (280)
T 1oyz_A          271 TSAIDKLKR  279 (280)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhhc
Confidence            887777653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.64  E-value=9e-14  Score=149.64  Aligned_cols=367  Identities=16%  Similarity=0.136  Sum_probs=269.0

Q ss_pred             hccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHhcCCch
Q 035507          248 LEILPMMVAGVWSD-DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE-DYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       248 ~~~l~~lv~~L~s~-~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      .+.++.|+..+.+. -.+-|..|+..|+.+....    ...+.+++++.|+..|+.+ ++.++...++.+|.++...+++
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y----~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY----RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT----TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh----HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            45789999988854 4789999999999975432    2345577899999999765 3578888999999988774432


Q ss_pred             -----------------hHHHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC-CchhHhh-cCCHHHHHHHh
Q 035507          326 -----------------NTKVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG-CRDLVLS-EGALIPLLAQL  385 (684)
Q Consensus       326 -----------------~~~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~-~g~l~~Ll~~L  385 (684)
                                       .++.+. +.+.++.|+.+|.+++..+|..++.+|..|+...+. .++.+.. .++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             222333 457899999999999999999999999999977766 6777774 48999999999


Q ss_pred             ccCCchHHHHHHHHHHHHhccCCCCCChhh-hhchHHHHHHHhcCCc----HHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507          386 NEHTELSMLRIATTTLSNLCRGKPRPLFDQ-VRPALPALAQLIHSND----EQVLTDACWALFGLSGDRNNDKIQAVIEA  460 (684)
Q Consensus       386 ~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~-~~~~l~~L~~lL~~~d----~~v~~~al~~L~~L~~~~~~~~~~~~~~~  460 (684)
                       ++....++..++..|.+|+++.+..+... .+++++.|+.++..+.    ..+..+++..+.+|. ..+..+...+.+.
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL-r~N~sNQ~~FrEt  253 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL-KNNNSNQNFFKEG  253 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH-TTCHHHHHHHHHT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH-hcCHHHHHHHHHc
Confidence             56677888899999999999974444433 4799999999998644    478999999999999 8888899999999


Q ss_pred             chHHHHHHhcCCCCcc------cHhH---HHHHHHHHHcCC------hhhHHHHHhcCChHHHHHHhccCC-ChhHHHHH
Q 035507          461 GVCGRLVELLGHPSPS------VLTP---ALWTVGNIVMGD------DFQTQCIINHGAVPCLLALLIHNH-KNSIKKEV  524 (684)
Q Consensus       461 g~l~~L~~lL~~~~~~------v~~~---al~~L~nl~~~~------~~~~~~~i~~g~l~~L~~lL~~~~-~~~v~~~a  524 (684)
                      |.++.|..++..+...      ....   ++.++.-++...      ......+.++|+++.|+.++..+. ...++.+|
T Consensus       254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A  333 (651)
T 3grl_A          254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTET  333 (651)
T ss_dssp             TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence            9999999999764332      1222   556666666542      234566789999999999987542 56799999


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC---------CHHHHHHHhccC-CHhHHHHHHHHHHHhhcCCCHHHHHHHHHC----C-
Q 035507          525 SWIISNIACGNREQIQAVIDAG---------LIGPLVNLLQNA-EFDIKEEAAWAISNASSRGTHDQIKYLVTE----G-  589 (684)
Q Consensus       525 ~~~L~nl~~~~~~~~~~l~~~g---------~l~~Li~ll~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~----g-  589 (684)
                      ..+++.+..+++.....+.+..         ++..|+.++.+. ..++|..|+.++..+..+. .+....+...    . 
T Consensus       334 l~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~  412 (651)
T 3grl_A          334 INTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTI  412 (651)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCccc
Confidence            9999999999888777766532         344444445443 6889999999999999853 3333333322    1 


Q ss_pred             -----Ch---HHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          590 -----CI---KPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       590 -----~l---~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                           .+   ..++..+-+.|+.-.-.+.-++..++....
T Consensus       413 ~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~  452 (651)
T 3grl_A          413 DATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENA  452 (651)
T ss_dssp             CCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCH
Confidence                 01   123444445566443445555666666543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=7.5e-13  Score=142.54  Aligned_cols=410  Identities=14%  Similarity=0.137  Sum_probs=292.8

Q ss_pred             ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCC-----------------cHHHHH-HcCCHHHHHHhhcCCCCHHH
Q 035507          249 EILPMMVAGVWS--DDNNLQLEATTQFQKLLSIESM-----------------PIEEVI-ESGVVPRFVEFLMREDYPQL  308 (684)
Q Consensus       249 ~~l~~lv~~L~s--~~~~~~~~a~~~L~~l~s~~~~-----------------~~~~ii-~~g~i~~Lv~lL~~~~~~~v  308 (684)
                      .+++.++..|+.  .|.++...++..|.++++.+..                 ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            478999999985  5788888899999888876542                 112332 4578999999999888 899


Q ss_pred             HHHHHHHHHHHhcCCch-hHHHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc
Q 035507          309 QFQAAWALTNIASGTSE-NTKVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN  386 (684)
Q Consensus       309 ~~~A~~~L~~l~~~~~~-~~~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~  386 (684)
                      |..|+.+|..++...++ ..+.+. ..++++.|+.+|+++...+|..++..|.+|+.++++.++.+.-.|+++.|+..+.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999987777 667777 4499999999999999999999999999999999999999988899999999996


Q ss_pred             cCC---chHHHHHHHHHHHHhccCCC-CCChhhhhchHHHHHHHhcCCcH------HHHHH---HHHHHHhhccCC----
Q 035507          387 EHT---ELSMLRIATTTLSNLCRGKP-RPLFDQVRPALPALAQLIHSNDE------QVLTD---ACWALFGLSGDR----  449 (684)
Q Consensus       387 ~~~---~~~v~~~a~~~L~nL~~~~~-~~~~~~~~~~l~~L~~lL~~~d~------~v~~~---al~~L~~L~~~~----  449 (684)
                      ...   .-.+...++.++.||.+..+ +.......+++|.|..++..+++      ....+   ++.++.-++ ..    
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv-~~~~~~  297 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLV-SPNNPP  297 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHT-CTTSCH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHh-CCCCCC
Confidence            443   23677899999999999973 44444558899999999875432      13333   666666666 33    


Q ss_pred             --ChHHHHHHHHhchHHHHHHhcCCC--CcccHhHHHHHHHHHHcCChhhHHHHHhcC---------ChHHHHHHhccCC
Q 035507          450 --NNDKIQAVIEAGVCGRLVELLGHP--SPSVLTPALWTVGNIVMGDDFQTQCIINHG---------AVPCLLALLIHNH  516 (684)
Q Consensus       450 --~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~i~~g---------~l~~L~~lL~~~~  516 (684)
                        ...+...+.+.|+++.|++++..+  ...++..|+.+++.+.++++...+.+.+..         ++..|+.++.+.+
T Consensus       298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~  377 (651)
T 3grl_A          298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ  377 (651)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence              224566788999999999998765  567889999999999999987776665432         3333444455554


Q ss_pred             ChhHHHHHHHHHHHHhcCChHHHHHHHHh----------CC---HHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHH
Q 035507          517 KNSIKKEVSWIISNIACGNREQIQAVIDA----------GL---IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIK  583 (684)
Q Consensus       517 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------g~---l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~  583 (684)
                      ...+|.+|+.++..+..++++....++..          +.   -..+...+-+.|+--.-.|+.++.++... +++...
T Consensus       378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~  456 (651)
T 3grl_A          378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKE  456 (651)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHH
Confidence            68899999999999998876544444422          11   11344555556765556688889998873 343333


Q ss_pred             HHHH------C-----CChHHHHhhccC-CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHH
Q 035507          584 YLVT------E-----GCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIEN  651 (684)
Q Consensus       584 ~l~~------~-----g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~  651 (684)
                      .+.+      .     -.+..+..+|.. .++.+...-+..|...+..+.            +....++.+...+..|-.
T Consensus       457 ~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p------------~AV~dFL~~~s~l~~L~~  524 (651)
T 3grl_A          457 QLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP------------IAVTHFLHNSANVPFLTG  524 (651)
T ss_dssp             HHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH------------HHHHHHHHSTTHHHHHHH
T ss_pred             HHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh------------HHHHHHHcCCchHHHHHH
Confidence            3222      1     114455565543 466776666777766665443            335677777777777665


Q ss_pred             hh-cC-C--CHHHHHHHHHHHHHhcC
Q 035507          652 LQ-SH-D--NNEIHEKSVKILETYWC  673 (684)
Q Consensus       652 L~-~~-~--~~~i~~~a~~ii~~~f~  673 (684)
                      .. ++ .  +.-|+-.+.-++--.|.
T Consensus       525 ~i~~~~~~~~~lvqGL~a~LLGi~ye  550 (651)
T 3grl_A          525 QIAENLGEEEQLVQGLCALLLGISIY  550 (651)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCcchHHHHHHHHHHHHHHhh
Confidence            43 32 2  23467777777665443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.60  E-value=1e-13  Score=155.18  Aligned_cols=330  Identities=15%  Similarity=0.139  Sum_probs=245.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ..+.+++.+++++...+..+..++..++...+   +. . .-+++.+.+-|++++ +.+|..|+.+|+++..  ++....
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~---e~-~-~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~~  121 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP---DM-A-IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITEY  121 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH---HH-H-HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc---hH-H-HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHHH
Confidence            56788999999999999888888887765322   11 1 235678888888877 9999999999998863  443333


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                           .++.+..++.++++.||..|++++++++...++   .+...+.++.+..+| .++++.++.+|+++|..++...+
T Consensus       122 -----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          122 -----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             -----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             -----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCC
Confidence                 367889999999999999999999999986655   233345677788877 68899999999999999998865


Q ss_pred             CC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          410 RP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       410 ~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                      .. ........++.++..+.+.++..+..++.+++.++ ..++...     ..+++.+..++++.++.++..|++++..+
T Consensus       193 ~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~-~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          193 NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN-PKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC-CCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC-CCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            33 23334566777888888889999999999999988 5444332     35678899999999999999999999998


Q ss_pred             HcC---ChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHH
Q 035507          489 VMG---DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEE  565 (684)
Q Consensus       489 ~~~---~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~  565 (684)
                      ...   +++..+.+. ..+.+.|+.++. + ++.+|..|+.+++.++...++..+.     .+..+. .+.+.+..+|..
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~  337 (591)
T 2vgl_B          267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLE  337 (591)
T ss_dssp             CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHH
T ss_pred             hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHH
Confidence            742   333344332 356677777664 6 8999999999999998754433221     111121 122345889999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          566 AAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       566 a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      |++.+.+++...+.+   .     +++.|.+++.+.+.+++..+++++..+...
T Consensus       338 al~~L~~l~~~~nv~---~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~  383 (591)
T 2vgl_B          338 KLDIMIRLASQANIA---Q-----VLAELKEYATEVDVDFVRKAVRAIGRCAIK  383 (591)
T ss_dssp             HHHHHHHTCCSSTHH---H-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCChhhHH---H-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence            999999998644322   2     466677888888899988888888887754

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.59  E-value=7.5e-14  Score=141.02  Aligned_cols=254  Identities=15%  Similarity=0.078  Sum_probs=199.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ..++.+++.|.++++.++..|+++|.++..           .+.++.|++++.+++ +.+|..|+++|+.+...... ..
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~-~~   89 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-ED   89 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-HH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-ch
Confidence            478999999999999999999999998642           236789999999887 89999999999998752221 11


Q ss_pred             HHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          329 VVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       329 ~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                           ..++.|.. ++.++++.++..++++|+++....+..     ....++.++..+ .+++..++..++++|+++...
T Consensus        90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~  158 (280)
T 1oyz_A           90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITA-FDKSTNVRRATAFAISVINDK  158 (280)
T ss_dssp             -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCCH
Confidence                 12344442 457789999999999999997433221     123467777777 678899999999999987542


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                                ..+|.|..++.++++.++..++++|+.+. ...+         .+++.|..++.++++.++..|+++|++
T Consensus       159 ----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          159 ----------ATIPLLINLLKDPNGDVRNWAAFAININK-YDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT-CCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhc-cCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                      47899999999999999999999999986 3332         457889999999999999999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc-CCHhHHHHH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN-AEFDIKEEA  566 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~-~~~~v~~~a  566 (684)
                      +.  .         ...++.|...+.++ +  ++..|+++|+.+..           ..++|.|..++.+ .+.++...+
T Consensus       219 ~~--~---------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          219 RK--D---------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             TT--C---------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hC--C---------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence            85  2         24788899999765 4  89999999999854           1478999999875 477888887


Q ss_pred             HHHHH
Q 035507          567 AWAIS  571 (684)
Q Consensus       567 ~~aL~  571 (684)
                      ..++.
T Consensus       274 ~~~l~  278 (280)
T 1oyz_A          274 IDKLK  278 (280)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            77764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.54  E-value=3.4e-13  Score=158.50  Aligned_cols=400  Identities=12%  Similarity=0.150  Sum_probs=266.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT-  327 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~-  327 (684)
                      .++.+.+.+.+.++..+..|+.++..++.... ......+ ..+++.++..+.+++ +.+|..|+|+++.++..-.... 
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence            34555566678899999999999999886543 1222222 257889999998887 9999999999999986311100 


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-----CCchhHhhcCCHHHHHHHhcc-CCchHHHHHHHHHH
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-----GCRDLVLSEGALIPLLAQLNE-HTELSMLRIATTTL  401 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-----~~r~~i~~~g~l~~Ll~~L~~-~~~~~v~~~a~~~L  401 (684)
                      ..-.-..+++.++..+.++ +.++..|+++|.+++....     .....+  ...++.++..+.. +.+..++..++.++
T Consensus       448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            0000123477888888775 8999999999999985421     111111  2345666777743 33478899999999


Q ss_pred             HHhccCCCCCChhhhhchHHHHHHHhcC---------------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHH
Q 035507          402 SNLCRGKPRPLFDQVRPALPALAQLIHS---------------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRL  466 (684)
Q Consensus       402 ~nL~~~~~~~~~~~~~~~l~~L~~lL~~---------------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L  466 (684)
                      ..++...+.........++|.++..+..               ....++..++.++..++ ........... ..+++.+
T Consensus       525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~-~~l~~~l  602 (861)
T 2bpt_A          525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI-RKSPSSVEPVA-DMLMGLF  602 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH-HHCGGGTGGGH-HHHHHHH
T ss_pred             HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHH-HHHHHHH
Confidence            9998876544444556777777776652               13567788999999888 44333222122 2477888


Q ss_pred             HHhcCCCCc-ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh
Q 035507          467 VELLGHPSP-SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA  545 (684)
Q Consensus       467 ~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  545 (684)
                      ...+.+.+. .++..++.+++.++..........+. .++|.+...+.++ ++.++..|+.+++.++........... .
T Consensus       603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~  679 (861)
T 2bpt_A          603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-D  679 (861)
T ss_dssp             HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-H
T ss_pred             HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-H
Confidence            888887766 89999999999998654433332222 4788999999776 888999999999999864333333333 3


Q ss_pred             CCHHHHHHHhccCC--HhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC-----------hHHHHHHHHH
Q 035507          546 GLIGPLVNLLQNAE--FDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD-----------PKIVTVCLEG  612 (684)
Q Consensus       546 g~l~~Li~ll~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~-----------~~v~~~al~~  612 (684)
                      .+++.+++.+.+.+  .+++..++.+++.++.........++-.  +++.+...+....           ..++..++++
T Consensus       680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~  757 (861)
T 2bpt_A          680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA  757 (861)
T ss_dssp             HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Confidence            47888888888764  8899999999999987443344444322  5777777776431           3577888899


Q ss_pred             HHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC----CHHHHHHHHHHHHHhc
Q 035507          613 LENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD----NNEIHEKSVKILETYW  672 (684)
Q Consensus       613 L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~----~~~i~~~a~~ii~~~f  672 (684)
                      +..++......         ...+...+.  ..++.|.....+.    +.+++..|...+..+.
T Consensus       758 ~~~i~~~l~~~---------~~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~  810 (861)
T 2bpt_A          758 YVGIVAGLHDK---------PEALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA  810 (861)
T ss_dssp             HHHHHHHTTTC---------HHHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccC---------HHHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence            98888653211         001111111  1234444443332    7889999988887763

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.52  E-value=5e-13  Score=157.03  Aligned_cols=357  Identities=14%  Similarity=0.162  Sum_probs=247.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-----------------CcHHHHHHcCCHHHHHHhhcCC------CCH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-----------------MPIEEVIESGVVPRFVEFLMRE------DYP  306 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-----------------~~~~~ii~~g~i~~Lv~lL~~~------~~~  306 (684)
                      .++.+...+.+.+..++..|+..+..++....                 ...... -..++|.++..+...      ++.
T Consensus       267 l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~  345 (861)
T 2bpt_A          267 LYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDW  345 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCC
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccC
Confidence            45666677788889999999988887765421                 011111 145788888888752      224


Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh--hcCCHHHHHHH
Q 035507          307 QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL--SEGALIPLLAQ  384 (684)
Q Consensus       307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~--~~g~l~~Ll~~  384 (684)
                      .++..|..+|..++....+.   ++ ..+++.+...+.++++.+|+.|+++++.++.....  +.+.  -...++.++..
T Consensus       346 ~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~il~~l~~~  419 (861)
T 2bpt_A          346 NVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK--VQRTYYVHQALPSILNL  419 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH--HHHHHHHHHHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHH
Confidence            79999999999998732211   11 13467777778888999999999999999965321  1111  11345666666


Q ss_pred             hccCCchHHHHHHHHHHHHhccCCCC--CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh----HHHHHHH
Q 035507          385 LNEHTELSMLRIATTTLSNLCRGKPR--PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN----DKIQAVI  458 (684)
Q Consensus       385 L~~~~~~~v~~~a~~~L~nL~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~----~~~~~~~  458 (684)
                      + .++++.++..++|+++.++...+.  ........++|.++..+.++ +.++..+++++.+++ ....    .......
T Consensus       420 l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~-~~~~~~~~~~l~~~~  496 (861)
T 2bpt_A          420 M-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV-EQLAEATPSPIYNFY  496 (861)
T ss_dssp             G-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH-HHHSSSSSCGGGGGH
T ss_pred             c-CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH-HhcccccchhhHHHH
Confidence            6 567889999999999999876321  12334678889999888775 899999999999988 3211    1111111


Q ss_pred             HhchHHHHHHhcCCCC--cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC--------------CChhHHH
Q 035507          459 EAGVCGRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN--------------HKNSIKK  522 (684)
Q Consensus       459 ~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~--------------~~~~v~~  522 (684)
                       ..+++.++..+.+.+  +.++..++.+++.++...+......+. .++|.++..+...              ....++.
T Consensus       497 -~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~  574 (861)
T 2bpt_A          497 -PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS  574 (861)
T ss_dssp             -HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence             246788888887543  788999999999998766544333332 3666777766421              0346788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCH-hHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 035507          523 EVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF-DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA  601 (684)
Q Consensus       523 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~  601 (684)
                      .++.++++++............ .+++.++..+...+. .++..++++++.++.....+...++-.  +++.+...+++.
T Consensus       575 ~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~  651 (861)
T 2bpt_A          575 NILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQV  651 (861)
T ss_dssp             HHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhccc
Confidence            9999999998744333332232 478888888988777 899999999999986443344444433  788888888888


Q ss_pred             ChHHHHHHHHHHHHHHhccc
Q 035507          602 DPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       602 ~~~v~~~al~~L~~il~~~~  621 (684)
                      +++++..++.++..+.....
T Consensus       652 ~~~vr~~a~~~l~~l~~~~~  671 (861)
T 2bpt_A          652 DSPVSITAVGFIADISNSLE  671 (861)
T ss_dssp             TSHHHHHHHHHHHHHHHHTG
T ss_pred             cHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999887654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.52  E-value=1.4e-12  Score=153.57  Aligned_cols=406  Identities=14%  Similarity=0.180  Sum_probs=261.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH-
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT-  327 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~-  327 (684)
                      .++.+...+.+.++.++..|+.++..++.... ..... .-..++|.++..+++++ +.+|..|+|+|++++...+... 
T Consensus       367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T 1qgr_A          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence            45566677788899999999999999886543 11222 22458899999998887 8999999999999998433210 


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC---------------CCchhHhhcCCHHHHHHHhccCC--c
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS---------------GCRDLVLSEGALIPLLAQLNEHT--E  390 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~---------------~~r~~i~~~g~l~~Ll~~L~~~~--~  390 (684)
                      ..-.-..+++.++..+.++ +.++..|+++|++++....               .....+  ...++.++..+....  +
T Consensus       445 ~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~  521 (876)
T 1qgr_A          445 NDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQ  521 (876)
T ss_dssp             STTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCS
T ss_pred             cHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcch
Confidence            0000124577888888775 8999999999999984311               111111  234666666664332  3


Q ss_pred             hHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC-----------Cc----HHHHHHHHHHHHhhccCCCh-HHH
Q 035507          391 LSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS-----------ND----EQVLTDACWALFGLSGDRNN-DKI  454 (684)
Q Consensus       391 ~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-----------~d----~~v~~~al~~L~~L~~~~~~-~~~  454 (684)
                      ..++..+..++..++...+.........++|.++..+..           .|    ++++..+++++..++ ..-. ...
T Consensus       522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~-~~~~~~~~  600 (876)
T 1qgr_A          522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVL-RKVQHQDA  600 (876)
T ss_dssp             TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHH-TTSCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHH-HHhChhhh
Confidence            567788889999988876554455566777777766542           22    456788999999998 5444 333


Q ss_pred             HHHHHhchHHHHHHhcCCCC--cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507          455 QAVIEAGVCGRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA  532 (684)
Q Consensus       455 ~~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  532 (684)
                      .... ..+++.++.++.+..  ..++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.++
T Consensus       601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            3222 357888999998764  468999999999998643332222222 367888888876436789999999999998


Q ss_pred             cCChHHHHHHHHhCCHHHHHHHhcc--CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--------
Q 035507          533 CGNREQIQAVIDAGLIGPLVNLLQN--AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD--------  602 (684)
Q Consensus       533 ~~~~~~~~~l~~~g~l~~Li~ll~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~--------  602 (684)
                      ......+...+ ..+++.++..+.+  .+.+++..+++++++++.....+...++  ..+++.+...+....        
T Consensus       679 ~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~  755 (876)
T 1qgr_A          679 RALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV  755 (876)
T ss_dssp             HHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred             HHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence            64323333333 3588889999887  3678999999999999863223332222  125566666665432        


Q ss_pred             ---hHHHHHHHHHHHHHHhcccccccC-CCCCcchhHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 035507          603 ---PKIVTVCLEGLENILKVGEAEKNT-DSDIGDINQFAQLVEEAEGLEKIENLQSHD--NNEIHEKSVKILETY  671 (684)
Q Consensus       603 ---~~v~~~al~~L~~il~~~~~~~~~-~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~--~~~i~~~a~~ii~~~  671 (684)
                         ..++..++.++..++......... ........+|...+     +..+..+..++  +..++..|...+..+
T Consensus       756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l  825 (876)
T 1qgr_A          756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDL  825 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence               267888888888887763321000 00000112232222     23444444555  678888888777664

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.50  E-value=9e-14  Score=150.95  Aligned_cols=360  Identities=13%  Similarity=0.091  Sum_probs=247.3

Q ss_pred             cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHH-----------HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHH
Q 035507          250 ILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIE-----------EVIESGVVPRFVEFLMREDYPQLQFQAAWAL  316 (684)
Q Consensus       250 ~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~-----------~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L  316 (684)
                      .+..+...+.++  ++.+|..|+..|++++........           .-....+-..++..|.+++ +.+ ..++.++
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i  113 (462)
T 1ibr_B           36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence            445666666654  689999999999998865421110           1112234456778887776 677 8899999


Q ss_pred             HHHhcCCchhHHHHHhcCChHHHHHhcCCC--ChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCC-chH
Q 035507          317 TNIASGTSENTKVVIEHDAVPIFVKLLASP--SDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHT-ELS  392 (684)
Q Consensus       317 ~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~-~~~  392 (684)
                      +.++.......   .-.+.++.|+..+.++  ++.+++.|+.+|+.++.+. +..-... ....++.++..+.... +..
T Consensus       114 ~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~  189 (462)
T 1ibr_B          114 AGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNN  189 (462)
T ss_dssp             HHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHH
Confidence            99987321100   1246789999999888  8999999999999998643 2111111 1235667777774443 789


Q ss_pred             HHHHHHHHHHHhccCCC--CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc
Q 035507          393 MLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL  470 (684)
Q Consensus       393 v~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL  470 (684)
                      ++..|++++.++.....  .........+++.+...+.+.+++++..+++++..++ ..........+..++++.++..+
T Consensus       190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~-~~~~~~~~~~~~~~l~~~~~~~~  268 (462)
T 1ibr_B          190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM-SLYYQYMETYMGPALFAITIEAM  268 (462)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH-HHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999764321  0011111235777777888889999999999999988 44333222222226777888888


Q ss_pred             CCCCcccHhHHHHHHHHHHcCChh---------------------hHHHHHhcCChHHHHHHhccC------CChhHHHH
Q 035507          471 GHPSPSVLTPALWTVGNIVMGDDF---------------------QTQCIINHGAVPCLLALLIHN------HKNSIKKE  523 (684)
Q Consensus       471 ~~~~~~v~~~al~~L~nl~~~~~~---------------------~~~~~i~~g~l~~L~~lL~~~------~~~~v~~~  523 (684)
                      .+.++.++..|+..++.++.....                     ..+..+ ..++|.++..+...      .+..+|..
T Consensus       269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~  347 (462)
T 1ibr_B          269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKA  347 (462)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHH
Confidence            888999999999999998754210                     011001 23567777777432      14579999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh
Q 035507          524 VSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP  603 (684)
Q Consensus       524 a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~  603 (684)
                      |+.+|..++...++.   ++ ..++|.+...+.+.+..+|..|+.+++.++.+..++..... -..+++.+..++.++++
T Consensus       348 a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~  422 (462)
T 1ibr_B          348 AGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSV  422 (462)
T ss_dssp             HHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCH
Confidence            999999998743321   22 24778888889889999999999999999986543221111 14578999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccc
Q 035507          604 KIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       604 ~v~~~al~~L~~il~~~~~  622 (684)
                      .++..++++|.++......
T Consensus       423 ~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          423 VVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            9999999999999987543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.49  E-value=1.4e-12  Score=146.41  Aligned_cols=327  Identities=15%  Similarity=0.112  Sum_probs=238.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      -.+..+.+.+++.++.++..|++++.++...      .+. ..+++.+.++|.+++ +.+|..|+.++.++...+++...
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence            3677888899999999999999999997531      222 356788999999988 99999999999999986665432


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc--------------CCchHHH
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE--------------HTELSML  394 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~--------------~~~~~v~  394 (684)
                           +.++.+..+|.+.++.|+..|+++|+.++..++.....+  ...++.++..|.+              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 678888899999999999999999999987654321111  2457777777643              2467778


Q ss_pred             HHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc------CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH
Q 035507          395 RIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH------SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE  468 (684)
Q Consensus       395 ~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~  468 (684)
                      ..++.+|..++...+    .......+.|..++.      +.+..+...+++++..+. . .+...     ..++..|..
T Consensus       252 ~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~-~-~~~l~-----~~a~~~L~~  320 (618)
T 1w63_A          252 VRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK-S-ESGLR-----VLAINILGR  320 (618)
T ss_dssp             HHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC-C-CHHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC-C-CHHHH-----HHHHHHHHH
Confidence            888999999987642    222345555555543      345689999999999987 3 22211     245678888


Q ss_pred             hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507          469 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI  548 (684)
Q Consensus       469 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l  548 (684)
                      ++.++++.++..|+.+|+.++...+...     ....+.++..+.++ +..+|+.|..++..++....  +..     ++
T Consensus       321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv  387 (618)
T 1w63_A          321 FLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM  387 (618)
T ss_dssp             HHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred             HHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence            8999999999999999999997654322     13567888889888 99999999999999987431  222     45


Q ss_pred             HHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507          549 GPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       549 ~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      +.|...+.+.+.+++..++.+++.++....+....      +++.|.+++......+...+...+..++...
T Consensus       388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~  453 (618)
T 1w63_A          388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNS  453 (618)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence            77888888899999999999999999753222222      2566666666554444444555555555543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.49  E-value=8.6e-13  Score=143.16  Aligned_cols=390  Identities=12%  Similarity=0.083  Sum_probs=268.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      +..++..+.+.|.++|..|...|.++...+        ..+.+..|+.++.+++ ++.+|..|+..|.++..........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~   74 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   74 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence            456677778899999999999998854210        1345677888887652 4899999999999998643211110


Q ss_pred             -----------HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC-chHHHHHH
Q 035507          330 -----------VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT-ELSMLRIA  397 (684)
Q Consensus       330 -----------i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~-~~~v~~~a  397 (684)
                                 -....+-..++..|.++++.+ ..++.+++.++..... ..  .-.+.++.++..+.+.. +..++..+
T Consensus        75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~-~~--~w~~ll~~L~~~l~~~~~~~~~r~~a  150 (462)
T 1ibr_B           75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIP-VN--QWPELIPQLVANVTNPNSTEHMKEST  150 (462)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGG-GT--CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcc-cc--ccHHHHHHHHHHhccCCCCHHHHHHH
Confidence                       001123455777888877788 8999999999854311 00  01246788888884432 88899999


Q ss_pred             HHHHHHhccCC-CCCChhhhhchHHHHHHHhcCC--cHHHHHHHHHHHHhhccCCChHHHH-HHHHhchHHHHHHhcCCC
Q 035507          398 TTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSN--DEQVLTDACWALFGLSGDRNNDKIQ-AVIEAGVCGRLVELLGHP  473 (684)
Q Consensus       398 ~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~L~~~~~~~~~~-~~~~~g~l~~L~~lL~~~  473 (684)
                      +.+|..++... +.........+++.+...+.+.  ++.++..|+++++++. ..-.+... .....-+++.+...+.++
T Consensus       151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~  229 (462)
T 1ibr_B          151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL-EFTKANFDKESERHFIMQVVCEATQCP  229 (462)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT-TTTHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence            99999999753 2222334467888899999887  7999999999999877 43222211 011122467777788888


Q ss_pred             CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh-----------------
Q 035507          474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR-----------------  536 (684)
Q Consensus       474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-----------------  536 (684)
                      ++.++..+++++..++...+......+..++++.++..+.+. ++.++..|++.+..++....                 
T Consensus       230 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  308 (462)
T 1ibr_B          230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE  308 (462)
T ss_dssp             SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcc
Confidence            999999999999999876654332222226777888888887 89999999999998875310                 


Q ss_pred             ----HHHHHHHHhCCHHHHHHHhccC-------CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHH
Q 035507          537 ----EQIQAVIDAGLIGPLVNLLQNA-------EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKI  605 (684)
Q Consensus       537 ----~~~~~l~~~g~l~~Li~ll~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v  605 (684)
                          ....... ..++|.++..+...       +..++..|+.++..++........     ..+++.+...+.+.++.+
T Consensus       309 ~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~~  382 (462)
T 1ibr_B          309 HTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWRY  382 (462)
T ss_dssp             CCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHHH
T ss_pred             chhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChHH
Confidence                0111111 34678888877532       457899999999999874432222     235677888889999999


Q ss_pred             HHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507          606 VTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWC  673 (684)
Q Consensus       606 ~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~  673 (684)
                      +..++.++..+........           +...+  ...+..|..+..++++.|+..|...+.++..
T Consensus       383 r~aal~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          383 RDAAVMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999987432110           00111  3456778888888999999999999988853

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.48  E-value=2.6e-12  Score=151.29  Aligned_cols=361  Identities=16%  Similarity=0.184  Sum_probs=247.4

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCch
Q 035507          249 EILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       249 ~~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      +.++.+++.+.++  ++.++..|+.++..++....+..-.-.-..+++.+.+.+.+++ ++.+|..|++++.+++..-..
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3678899999988  9999999999999987643211100011346777888887762 379999999999998863221


Q ss_pred             hH-HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          326 NT-KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       326 ~~-~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      .. .......+++.+...+.+++..++..++.+|..++...+..-........++.++..+ .+.+..++..+++++..+
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence            11 0111112577777788888999999999999999865543211112224566666666 567788999999999888


Q ss_pred             ccCC-------------------CCCCh--hhhhchHHHHHHHhcC-------CcHHHHHHHHHHHHhhccCCChHHHHH
Q 035507          405 CRGK-------------------PRPLF--DQVRPALPALAQLIHS-------NDEQVLTDACWALFGLSGDRNNDKIQA  456 (684)
Q Consensus       405 ~~~~-------------------~~~~~--~~~~~~l~~L~~lL~~-------~d~~v~~~al~~L~~L~~~~~~~~~~~  456 (684)
                      +...                   +....  .....++|.++..+..       ++..++..+..++..++ ....+   .
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~-~~~~~---~  362 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA-TCCED---D  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHH-HHHGG---G
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHH-HHCcH---h
Confidence            7541                   11111  1235677888887752       35678889999998888 32221   1


Q ss_pred             HHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh-hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507          457 VIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN  535 (684)
Q Consensus       457 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  535 (684)
                      ++ ..+++.+...+.++++.+|..|+++++.++.+.. ......+ ..++|.++..+.++ ++.+|..|+|++++++...
T Consensus       363 ~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~  439 (876)
T 1qgr_A          363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELL  439 (876)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhC
Confidence            12 2467778888889999999999999999998765 3333322 35889999999888 8999999999999998743


Q ss_pred             hHHH--HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC--------------HHHHHHHHHCCChHHHHhhcc
Q 035507          536 REQI--QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT--------------HDQIKYLVTEGCIKPLCDLLQ  599 (684)
Q Consensus       536 ~~~~--~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~--------------~~~~~~l~~~g~l~~L~~lL~  599 (684)
                      +...  ...+ ..+++.++..+.+. +.++..|++++.+++....              .....++  ..+++.|...+.
T Consensus       440 ~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~  515 (876)
T 1qgr_A          440 PEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTD  515 (876)
T ss_dssp             GGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTT
T ss_pred             chhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHh
Confidence            3211  1111 24678888888774 8999999999999985311              0011121  235677777776


Q ss_pred             CC---ChHHHHHHHHHHHHHHhccc
Q 035507          600 CA---DPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       600 ~~---~~~v~~~al~~L~~il~~~~  621 (684)
                      ..   +..++..+++++..+.....
T Consensus       516 ~~~~~~~~~r~~~~~~l~~l~~~~~  540 (876)
T 1qgr_A          516 RPDGHQNNLRSSAYESLMEIVKNSA  540 (876)
T ss_dssp             SCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred             CcCcchhhHHHHHHHHHHHHHHHCc
Confidence            54   35788889999999988754

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.43  E-value=2e-11  Score=148.89  Aligned_cols=406  Identities=12%  Similarity=0.108  Sum_probs=268.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.++..+.+.|.+++..|+..|.+.+.......+.-....+++.+++.|.+++ +.+|..|+.+|..++...+..  .
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--~   83 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--Q   83 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--H
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--H
Confidence            5688999999999999999999999877554311111122346788999998776 899999999999999754441  1


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc-----hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR-----DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r-----~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      +  ..+++.++..+.++++.+|..|+.+|+.++.......     ..-.-...++.++..+.++.+..++..++.++..+
T Consensus        84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            1  2357888888888889999999999999985443210     00112245777888885457788999999999999


Q ss_pred             ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHH
Q 035507          405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALW  483 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~  483 (684)
                      +...+..-......+++.+...+.++++.++..|+.+++.++ ....+.   + -..+++.++..+.+. +..++..++.
T Consensus       162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~-~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV-MSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT-TTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence            864332222345778888888999999999999999999999 543322   1 224677777777544 3578889999


Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc------
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN------  557 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~------  557 (684)
                      +++.++...+...... -..++|.++..+.+. ++.+|..|.+++..++...++.....+ ..++|.+++.+..      
T Consensus       237 ~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~  313 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNY  313 (1230)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCC
Confidence            9999987554322111 136789999999887 889999999999999874333222222 2245555444321      


Q ss_pred             -------------------------------CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHH
Q 035507          558 -------------------------------AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIV  606 (684)
Q Consensus       558 -------------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~  606 (684)
                                                     ...++|..|+.++..++.........+  -..+++.+...+.+.++.++
T Consensus       314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr  391 (1230)
T 1u6g_C          314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENVK  391 (1230)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHHH
T ss_pred             cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHHH
Confidence                                           123578899999999887433212222  24578888888888899999


Q ss_pred             HHHHHHHHHHHhccccccc-CCCC-----Ccch-hHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          607 TVCLEGLENILKVGEAEKN-TDSD-----IGDI-NQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       607 ~~al~~L~~il~~~~~~~~-~~~~-----~~~~-~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      ..++.++..++........ ..+.     ..+. ......+  ...++.+.....++++.++..+...+..+.
T Consensus       392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~  462 (1230)
T 1u6g_C          392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELV  462 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            9999999988874321000 0000     0000 0001111  123445555566777777777666665543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.39  E-value=1.4e-11  Score=138.42  Aligned_cols=324  Identities=15%  Similarity=0.119  Sum_probs=237.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ....+++.+.+++.+.+.-+..++..++..++   +.++  -+++.|.+-|.+++ +.+|..|+++|+++..  ++.   
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~---e~~~--l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~---  139 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQ---DVHL--LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEM---  139 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCH---HHHH--HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHH---
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCc---HHHH--HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHH---
Confidence            56788889999999998888888888776542   1111  24677888888887 8999999999999985  322   


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                       . ...++.+..+|.++++.||..|+.+++++....|+...     +.++.+..++ .+.++.++..|+++|..++...+
T Consensus       140 -~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          140 -C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             -H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHH
T ss_pred             -H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhCh
Confidence             2 24578889999999999999999999999976654221     3455555666 67889999999999999987643


Q ss_pred             CCChhhhhchHHHHHHHhcC---------------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC---
Q 035507          410 RPLFDQVRPALPALAQLIHS---------------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG---  471 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~~---------------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~---  471 (684)
                      .. .......+|.++.+|..               .++..+..++.+++.++ ..+++..+     .+.+.|..++.   
T Consensus       212 ~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~-~~~~~~~~-----~~~~~L~~l~~~~~  284 (618)
T 1w63_A          212 DM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILG-RNDDDSSE-----AMNDILAQVATNTE  284 (618)
T ss_dssp             HH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHT-TTCHHHHH-----TTHHHHHHHHHTSC
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhC-CCCHHHHH-----HHHHHHHHHHhccc
Confidence            21 22345677777776652               48999999999999999 65544322     34444555442   


Q ss_pred             ---CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507          472 ---HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI  548 (684)
Q Consensus       472 ---~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l  548 (684)
                         +.+..+...|++++..+.. .+....     .+++.|..++.++ ++.+|..|..+|+.++...+..+     ....
T Consensus       285 ~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~-----~~~~  352 (618)
T 1w63_A          285 TSKNVGNAILYETVLTIMDIKS-ESGLRV-----LAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAV-----QRHR  352 (618)
T ss_dssp             CSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----HHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHH-----GGGH
T ss_pred             cccchHHHHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHH-----HHHH
Confidence               2345788889999988743 221111     3567888889888 89999999999999987544322     2356


Q ss_pred             HHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          549 GPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       549 ~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      +.++..+.+.+..+|..|+.++..++...+.+.        +++.|..++.+.+++++..+..++..+...
T Consensus       353 ~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          353 STIVDCLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             HHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHccCCChhHHHHHHHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            788888999999999999999999987544221        345666777777888888888888877764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.38  E-value=2.1e-11  Score=117.35  Aligned_cols=187  Identities=21%  Similarity=0.239  Sum_probs=159.0

Q ss_pred             cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCC
Q 035507          333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL  412 (684)
Q Consensus       333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~  412 (684)
                      .+.++.|+..|.++++.+|..|+++|+.+..           ...++.|+..+ .+++..++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            4679999999999999999999999999743           24578899988 57789999999999999863      


Q ss_pred             hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507          413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD  492 (684)
Q Consensus       413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  492 (684)
                          ...++.+..++.++++.++..++++|+.+. .           .+.++.|..++.++++.++..|+++|+.+..  
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG-D-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-c-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                367899999999999999999999999987 3           2468899999999999999999999999842  


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507          493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN  572 (684)
Q Consensus       493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n  572 (684)
                      +         ..++.|..++.++ ++.+|..|+++|+.+..           ...++.|..++.++++.+|..|..+|.+
T Consensus       142 ~---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 E---------RAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  200 (211)
T ss_dssp             G---------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred             H---------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            2         3678899999888 99999999999999943           2367888899999999999999999999


Q ss_pred             hhcC
Q 035507          573 ASSR  576 (684)
Q Consensus       573 l~~~  576 (684)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.38  E-value=1.6e-11  Score=118.20  Aligned_cols=187  Identities=21%  Similarity=0.195  Sum_probs=158.8

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507          290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR  369 (684)
Q Consensus       290 ~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r  369 (684)
                      .+.++.|+++|.+++ +.+|..|+++|..+..           .++++.|+.+|.++++.++..|+++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457899999999887 9999999999998765           3678999999999999999999999999842      


Q ss_pred             hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 035507          370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR  449 (684)
Q Consensus       370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~  449 (684)
                           .+.++.|+..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+. . 
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-D-  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C-
Confidence                 23578888888 77889999999999999854          357899999999999999999999999987 3 


Q ss_pred             ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       450 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                                ...++.|..++.++++.++..|+.+|+.+..  +         .+++.|..++.++ ++.+|..|..+|.
T Consensus       142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~  199 (211)
T 3ltm_A          142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLE  199 (211)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                      2468899999999999999999999999842  1         3567888999888 9999999999999


Q ss_pred             HHhcC
Q 035507          530 NIACG  534 (684)
Q Consensus       530 nl~~~  534 (684)
                      ++...
T Consensus       200 ~~~~~  204 (211)
T 3ltm_A          200 THKSF  204 (211)
T ss_dssp             C----
T ss_pred             hcCCC
Confidence            99764

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.36  E-value=4.1e-11  Score=114.25  Aligned_cols=184  Identities=22%  Similarity=0.213  Sum_probs=158.5

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      +..+.++++|++++ +.+|..|+++|..+..           .+.++.|+.+|.++++.++..|+++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            45789999999998 9999999999998765           2568999999999999999999999999842       


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN  450 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~  450 (684)
                          ...++.|+..+ .++++.++..++++|..+..          ...++.+..++.++++.++..++++|+.+. .  
T Consensus        75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~--  136 (201)
T 3ltj_A           75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-D--  136 (201)
T ss_dssp             ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-C--
T ss_pred             ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-C--
Confidence                13578888888 67889999999999999854          357899999999999999999999999987 3  


Q ss_pred             hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHH
Q 035507          451 NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISN  530 (684)
Q Consensus       451 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~n  530 (684)
                               .+.++.|..++.++++.++..|+++|+.+.  .+         ..++.|..++.++ ++.+|..|..+|.+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLET  195 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence                     357889999999999999999999999983  22         2577888899888 99999999999998


Q ss_pred             Hh
Q 035507          531 IA  532 (684)
Q Consensus       531 l~  532 (684)
                      +.
T Consensus       196 l~  197 (201)
T 3ltj_A          196 HK  197 (201)
T ss_dssp             CC
T ss_pred             HH
Confidence            74

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.36  E-value=1.9e-11  Score=149.04  Aligned_cols=396  Identities=12%  Similarity=0.135  Sum_probs=260.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc-----HHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHhcC
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-----IEEVIESGVVPRFVEFLMR-EDYPQLQFQAAWALTNIASG  322 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~-----~~~ii~~g~i~~Lv~lL~~-~~~~~v~~~A~~~L~~l~~~  322 (684)
                      ..++.+...+.++++.+|..|+.++..++....+.     ...-....++|.|.+.+.+ ++ +.++..|+.+|..++..
T Consensus        86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence            35778888888888889999999999887654432     1112234578999999984 55 89999999999999852


Q ss_pred             CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507          323 TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS  402 (684)
Q Consensus       323 ~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~  402 (684)
                      ....... .-...++.|+..+.++++.+|..|+.+|+.++...+.   .+ -...++.++..+....+..++..++.+++
T Consensus       165 ~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~  239 (1230)
T 1u6g_C          165 QGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA  239 (1230)
T ss_dssp             TCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             hHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence            2111100 0123567788888888999999999999999965533   11 12357888888865544566777888888


Q ss_pred             HhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC----------
Q 035507          403 NLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH----------  472 (684)
Q Consensus       403 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~----------  472 (684)
                      .++...+..-......++|.+...+.+++++++..++.++..++ ........... ..+++.++..+..          
T Consensus       240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~-~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~  317 (1230)
T 1u6g_C          240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV-RRCPKEVYPHV-STIINICLKYLTYDPNYNYDDED  317 (1230)
T ss_dssp             HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH-HCTTCCCHHHH-HHHHHHHTTCCCCC---------
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccc
Confidence            88876543222345789999999999999999999999999888 43322212122 2355666555531          


Q ss_pred             ---------------------------CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHH
Q 035507          473 ---------------------------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVS  525 (684)
Q Consensus       473 ---------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~  525 (684)
                                                 ..+.+|..|+.++..++...+......+ ..++|.++..+.+. +..+|..|+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~  395 (1230)
T 1u6g_C          318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVF  395 (1230)
T ss_dssp             ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHH
T ss_pred             cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHH
Confidence                                       1134688899999999875543333333 36788888888777 889999999


Q ss_pred             HHHHHHhcC--C-----------------hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 035507          526 WIISNIACG--N-----------------REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLV  586 (684)
Q Consensus       526 ~~L~nl~~~--~-----------------~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~  586 (684)
                      .++..+...  .                 .......+ ..+++.+...+.+.++.+|..++.+++.++.........++ 
T Consensus       396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-  473 (1230)
T 1u6g_C          396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-  473 (1230)
T ss_dssp             HHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH-
T ss_pred             HHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH-
Confidence            988877641  1                 11122222 23677777779989999999999999998864321111111 


Q ss_pred             HCCChHHHHhhccCCCh--HHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 035507          587 TEGCIKPLCDLLQCADP--KIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKS  664 (684)
Q Consensus       587 ~~g~l~~L~~lL~~~~~--~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a  664 (684)
                       ..+++.+...+.+..+  .++..++..+..++.......           +...+  ...+..+.....+++..|...|
T Consensus       474 -~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~-----------~~~~l--~~llp~L~~~l~d~~~~v~~~a  539 (1230)
T 1u6g_C          474 -PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEA  539 (1230)
T ss_dssp             -HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH-----------HHhHH--HHHHHHHHHHHcccchHHHHHH
Confidence             2357788888887654  888888888888876432210           11222  1234555545555666665555


Q ss_pred             HHHHHH
Q 035507          665 VKILET  670 (684)
Q Consensus       665 ~~ii~~  670 (684)
                      ...+..
T Consensus       540 l~~l~~  545 (1230)
T 1u6g_C          540 LLVTQQ  545 (1230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.35  E-value=4.6e-11  Score=113.93  Aligned_cols=184  Identities=21%  Similarity=0.243  Sum_probs=158.7

Q ss_pred             CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCCh
Q 035507          334 DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLF  413 (684)
Q Consensus       334 g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~  413 (684)
                      +..+.++++|.++++.+|..|+++|+.+..           ...++.|+..+ .+++..++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            457899999999999999999999999742           23578899999 67889999999999998853       


Q ss_pred             hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507          414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD  493 (684)
Q Consensus       414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  493 (684)
                         ...++.+..++.++++.++..++++|+.+. .           ...++.|..++.++++.++..|+++|+.+..   
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIG-D-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-c-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence               257899999999999999999999999987 3           2468889999999999999999999999853   


Q ss_pred             hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507          494 FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA  573 (684)
Q Consensus       494 ~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl  573 (684)
                              ...++.|..++.++ ++.+|..|+++|+.+..  +         ..++.|..++.++++.++..|..+|..+
T Consensus       137 --------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                    24788899999988 99999999999999932  1         2578888899999999999999999987


Q ss_pred             h
Q 035507          574 S  574 (684)
Q Consensus       574 ~  574 (684)
                      -
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.17  E-value=1.3e-08  Score=113.93  Aligned_cols=331  Identities=15%  Similarity=0.108  Sum_probs=231.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ....+++.+.+++...+..+..++..++..+++...     =+++.+.+=+.+++ +.++..|+.+|+++..  ++... 
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~-----L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~-  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR-----LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE-  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH-----HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH-
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH-----HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH-
Confidence            567889999999999999998888887655432111     13567777778887 9999999999999975  44222 


Q ss_pred             HHhcCChHHHHHhc--CCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          330 VIEHDAVPIFVKLL--ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       330 i~~~g~i~~Li~lL--~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                          ..++.+.+++  .+.++.||..|+.++.++....|+   .+...+.++.+..+| .+.++.++.+|+.++..++..
T Consensus       146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHh
Confidence                4578888898  889999999999999999976554   222346788888888 788999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHHhcCC-------------cHHHHHHHHHHHHhhccCC-ChHHHHHHHHhchHHHHHHhcC--
Q 035507          408 KPRPLFDQVRPALPALAQLIHSN-------------DEQVLTDACWALFGLSGDR-NNDKIQAVIEAGVCGRLVELLG--  471 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~-------------d~~v~~~al~~L~~L~~~~-~~~~~~~~~~~g~l~~L~~lL~--  471 (684)
                      .+..-.......+..+.+++..+             ++..+..++..+..++ .. +++....+.+  +++.++..+.  
T Consensus       218 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~-~~~d~~~~~~l~~--~L~~il~~~~~~  294 (621)
T 2vgl_A          218 NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP-PPEDPAVRGRLTE--CLETILNKAQEP  294 (621)
T ss_dssp             CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS-SCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC-CCCCHHHHHHHHH--HHHHHHHhhccC
Confidence            53211112233333344444322             6889999999999998 53 3343333332  3444443321  


Q ss_pred             -------CCCc--ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507          472 -------HPSP--SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV  542 (684)
Q Consensus       472 -------~~~~--~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  542 (684)
                             +.+.  .+...|++++..+.. .++...     .++..|..++.++ ++.+|..|..++..++...+. .. .
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~~-~  365 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-HE-A  365 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-HH-H
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-HH-H
Confidence                   1122  677788888887752 222222     3566788888877 899999999999999875432 11 2


Q ss_pred             HHhCCHHHHHHHhc-cCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507          543 IDAGLIGPLVNLLQ-NAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       543 ~~~g~l~~Li~ll~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~  618 (684)
                      + ....+.++..+. +.|..++..|+..+..++.   +.....     ++..|..++...|.+++..++..+..+..
T Consensus       366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            2 236778888888 8899999999999999975   444444     45566677777788877777777766654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.15  E-value=1.6e-09  Score=121.17  Aligned_cols=329  Identities=12%  Similarity=0.122  Sum_probs=221.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL--MREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .+..+.+.++++|+.++-.|+.++.++..      ..++ ..+++.+.+++  .+.+ +.+|..|+.++.++...+++..
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~------~e~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~  183 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS------REMA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLV  183 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC------HHHH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC------HHHH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhc
Confidence            56778888899999999999999999743      1233 24678888998  7777 9999999999999998655433


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc----c--CC----------ch
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN----E--HT----------EL  391 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~----~--~~----------~~  391 (684)
                      .   ..+.++.+..+|.++++.|+..|+.++..++...+.   ..  ...++.++..|.    .  .+          ++
T Consensus       184 ~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~---~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~  255 (621)
T 2vgl_A          184 P---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE---EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP  255 (621)
T ss_dssp             C---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH---HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred             C---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence            2   247899999999999999999999999999876543   11  123444444332    1  11          45


Q ss_pred             HHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh---------cCCc--HHHHHHHHHHHHhhccCCChHHHHHHHHh
Q 035507          392 SMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI---------HSND--EQVLTDACWALFGLSGDRNNDKIQAVIEA  460 (684)
Q Consensus       392 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL---------~~~d--~~v~~~al~~L~~L~~~~~~~~~~~~~~~  460 (684)
                      -.+..++..+..++..............++.++..+         ++.+  ..+...++.++.++.  ..++...     
T Consensus       256 w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~-----  328 (621)
T 2vgl_A          256 WLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLV-----  328 (621)
T ss_dssp             HHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHH-----
T ss_pred             hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC--CcHHHHH-----
Confidence            667777777777764321111111223333333322         1223  388889999999887  3333222     


Q ss_pred             chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc-cCCChhHHHHHHHHHHHHhcCChHHH
Q 035507          461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI-HNHKNSIKKEVSWIISNIACGNREQI  539 (684)
Q Consensus       461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~  539 (684)
                      .++..|..++.++++.++..|+.++..++...+. ...+  ....+.++..+. ++ +..+|..|..++..++.  +.++
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence            3567788999889999999999999999876642 1222  246778888888 77 89999999999999974  3444


Q ss_pred             HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHh
Q 035507          540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILK  618 (684)
Q Consensus       540 ~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~  618 (684)
                      ..     ++..|...+...+.+++..++.+++.++....+...      -+++.|.+++......+...+...+..++.
T Consensus       403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~  470 (621)
T 2vgl_A          403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT------WYVDTILNLIRIAGDYVSEEVWYRVIQIVI  470 (621)
T ss_dssp             HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHG
T ss_pred             HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence            43     566778888888999999999999998752111111      135566666654333333344444444443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.99  E-value=4.3e-09  Score=119.32  Aligned_cols=217  Identities=15%  Similarity=0.090  Sum_probs=157.4

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHH-HhcCCCChHHHHHHHHHHHHhhCCC-CC
Q 035507          290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV-KLLASPSDDVREQAVWALGNVAADS-SG  367 (684)
Q Consensus       290 ~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li-~lL~~~~~~v~~~a~~~L~nLa~~~-~~  367 (684)
                      ..++| +++.|++++ +..|..|+++|++|+. ++..+..+...|++..++ .+|.+++.+||+.|+++|.||+.+. +.
T Consensus        34 ~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            34555 567788888 8999999999999997 888999999999887765 5788899999999999999999653 45


Q ss_pred             CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 035507          368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG  447 (684)
Q Consensus       368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~  447 (684)
                      .++.+...|++++|...+.+         ....+........... ......+           .++...++.+|.+++ 
T Consensus       111 ~~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~-  168 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLA-  168 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHcChHHHHHHHHHh---------hHHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHH-
Confidence            67778889999999988832         1222222221110000 0001111           234566778888888 


Q ss_pred             CCChHHHHHHHHhchHHHHHHhcCCC---CcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh--ccCCChhHHH
Q 035507          448 DRNNDKIQAVIEAGVCGRLVELLGHP---SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL--IHNHKNSIKK  522 (684)
Q Consensus       448 ~~~~~~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL--~~~~~~~v~~  522 (684)
                      ..+++....+...+.++.|+..|.+.   ...++..|+.+|..++..++...+.+.+.+....+..++  ... +...+.
T Consensus       169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~  247 (684)
T 4gmo_A          169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAV  247 (684)
T ss_dssp             HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHH
T ss_pred             hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHH
Confidence            77788888888889999999988442   356899999999999999998888888877544333332  233 345678


Q ss_pred             HHHHHHHHHh
Q 035507          523 EVSWIISNIA  532 (684)
Q Consensus       523 ~a~~~L~nl~  532 (684)
                      .+++++.|+.
T Consensus       248 la~giL~Ni~  257 (684)
T 4gmo_A          248 MACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhHh
Confidence            8999999984

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.99  E-value=4.5e-08  Score=110.76  Aligned_cols=307  Identities=13%  Similarity=0.117  Sum_probs=211.9

Q ss_pred             cHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHH
Q 035507          250 ILPMMVAGVW---SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-------YPQLQFQAAWALTNI  319 (684)
Q Consensus       250 ~l~~lv~~L~---s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-------~~~v~~~A~~~L~~l  319 (684)
                      .+..+-+.|.   ++++.++-.|+.++.-+-.+..   ..     ++..|...|.+++       .+.++..|+-.|+.+
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            4566666676   6678888889988887665543   11     4567777776543       367898999999998


Q ss_pred             hcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507          320 ASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT  399 (684)
Q Consensus       320 ~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~  399 (684)
                      ..|+..       ..+++.|..++.+++..+++.|+.+||-+-.....       ..++..|+..+..+.+..+++.++.
T Consensus       465 ~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aal  530 (963)
T 4ady_A          465 AMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLAV  530 (963)
T ss_dssp             STTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             hcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHHH
Confidence            765431       13467788888877777888999999987533322       1246778887767778899999999


Q ss_pred             HHHHhccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHH--hhccCCChHHHHHHHHhchHHHHHHh-cCCCCc
Q 035507          400 TLSNLCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALF--GLSGDRNNDKIQAVIEAGVCGRLVEL-LGHPSP  475 (684)
Q Consensus       400 ~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~--~L~~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~  475 (684)
                      +|+.+..+.        ...++.+++.|. +.++-++..++.+++  +.. .++...         ++.|++. ..+.+.
T Consensus       531 gLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaG-TGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          531 GLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAG-TGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-SCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCCHHH---------HHHHHHHhccCCcH
Confidence            999887665        245666666665 578888888877775  444 455443         3333333 346677


Q ss_pred             ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh
Q 035507          476 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL  555 (684)
Q Consensus       476 ~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll  555 (684)
                      .+|..|+.+|+.+..+.++         .++.++.+|.+..++.+|..|+++|+.++++++..       .++..|..+.
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence            8999999999999877752         45666665544449999999999999999876531       2567788888


Q ss_pred             ccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc--CCChHHHHHHHHHHH
Q 035507          556 QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQ--CADPKIVTVCLEGLE  614 (684)
Q Consensus       556 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~--~~~~~v~~~al~~L~  614 (684)
                      .+.+..|+..|+.+++.+..+.+.....++.  +.+..|.....  +.|+..+..+.-+..
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqG  715 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQG  715 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            8999999999999999998765433111111  12344555554  345555555555554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.92  E-value=9.4e-08  Score=84.62  Aligned_cols=217  Identities=14%  Similarity=0.166  Sum_probs=172.0

Q ss_pred             hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCC
Q 035507          332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRP  411 (684)
Q Consensus       332 ~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~  411 (684)
                      +..++..++.+|.+.-+.|+.+|+..+.+++..-|+..+-     .+..|+.++..+...........+++.++...|  
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence            4467899999999999999999999999999877664332     356777777788888887888889999987753  


Q ss_pred             ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC
Q 035507          412 LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG  491 (684)
Q Consensus       412 ~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  491 (684)
                        ..+.+.+|.+..-..-+|+.++.+...+|..+. ..+++...     +++.-+..++.+++..-+..|+..++.+...
T Consensus       103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIa-ranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIA-KANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH-HHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHH-HhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence              456788888888888899999999999999999 66655443     5667789999988876677777777766544


Q ss_pred             ChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHH
Q 035507          492 DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAIS  571 (684)
Q Consensus       492 ~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~  571 (684)
                      .   .+++.  ..+|.|..+|.+. +.-||..|..+|.+++..++..+..+      ..-++-+.+.+..+++....+|+
T Consensus       175 ~---~~yv~--PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          175 S---FKYVN--PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             T---HHHHG--GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHH
T ss_pred             C---ccccC--cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHH
Confidence            4   34333  5899999999999 99999999999999999887754432      33356677788889998889988


Q ss_pred             Hhhc
Q 035507          572 NASS  575 (684)
Q Consensus       572 nl~~  575 (684)
                      .++.
T Consensus       243 rl~l  246 (253)
T 2db0_A          243 RLLL  246 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.88  E-value=9.8e-08  Score=88.47  Aligned_cols=226  Identities=18%  Similarity=0.160  Sum_probs=173.3

Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhH
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT  496 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  496 (684)
                      ...+..+..+++..|+.++.+++.++..+. ...++......-..+++.++.++.+.+..+...|++++..+..+.+-.-
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~Leell-K~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEIL-KRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHH-HhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            457888999999999999999999999999 5444444444445789999999999999999999999999998776333


Q ss_pred             HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507          497 QCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       497 ~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~  576 (684)
                      .....  +...+..++.++ ++-++.+|+-.++-+--.++       ..+++..+..++.+.+..++..|..++.+++..
T Consensus       111 ~~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence            32322  567888888877 99999999999999832221       123567888889889999999999999999874


Q ss_pred             C-CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhh-c
Q 035507          577 G-THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQ-S  654 (684)
Q Consensus       577 ~-~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~-~  654 (684)
                      . +++.     -.+++.-+-+++++.|+.++..+++++..++..--..          |..   ..-.+......+|. -
T Consensus       181 S~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~----------~~~---~~~~~~~~~v~~l~~~  242 (265)
T 3b2a_A          181 SADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE----------NVK---IELLKISRIVDGLVYR  242 (265)
T ss_dssp             CSSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS----------CCH---HHHHHHHHHHHHGGGC
T ss_pred             cCCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH----------hHH---HHHHHHHHHHHHHHHh
Confidence            3 2222     2347778889999999999999999999999873221          111   12234556677787 6


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 035507          655 HDNNEIHEKSVKILETY  671 (684)
Q Consensus       655 ~~~~~i~~~a~~ii~~~  671 (684)
                      ...|.++.+|..+.+..
T Consensus       243 ~~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          243 EGAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             SSCHHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHH
Confidence            78899999998877653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.78  E-value=1.9e-08  Score=113.96  Aligned_cols=196  Identities=14%  Similarity=0.102  Sum_probs=152.6

Q ss_pred             CHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHH-HHHHhcCCcHHHHHHHHHHHHhhccCCChHHHH
Q 035507          377 ALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPA-LAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQ  455 (684)
Q Consensus       377 ~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~-L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~  455 (684)
                      .+.|+++.| ++++...+..|+++|++|+.+..........++++. +..++.+++.+|+..|+++|.||+.....+...
T Consensus        35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            467888888 788999999999999999976443444445667665 567889999999999999999999445567888


Q ss_pred             HHHHhchHHHHHHhcCCCC---------------------cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc
Q 035507          456 AVIEAGVCGRLVELLGHPS---------------------PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH  514 (684)
Q Consensus       456 ~~~~~g~l~~L~~lL~~~~---------------------~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~  514 (684)
                      .+++.|+++.|..++....                     ..+...++.+|.+++.+++.....+...+.++.|+..|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            8999999999998874310                     1234567889999999888888888889999999999854


Q ss_pred             CC--ChhHHHHHHHHHHHHhcCChHHHHHHHHhCC---HHHHHHHhccCCHhHHHHHHHHHHHhh
Q 035507          515 NH--KNSIKKEVSWIISNIACGNREQIQAVIDAGL---IGPLVNLLQNAEFDIKEEAAWAISNAS  574 (684)
Q Consensus       515 ~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~---l~~Li~ll~~~~~~v~~~a~~aL~nl~  574 (684)
                      ..  ..+++..|+.+|.+++..+++.++.+.+.+.   +..+..+ ...+...+..+++.+.|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence            31  4679999999999999999999988887664   3333333 3344455778889998875

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.73  E-value=3.2e-07  Score=93.70  Aligned_cols=301  Identities=16%  Similarity=0.097  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccC
Q 035507          309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH  388 (684)
Q Consensus       309 ~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~  388 (684)
                      +.....+|.-+..|.+-....+  ..+...+++++.+++..+++.+...+.+++...+.   .++   ++..+.+-+ ++
T Consensus        45 ~~~l~kll~l~~~G~~f~~~e~--t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl-~~  115 (355)
T 3tjz_B           45 AHILTKILYLINQGEHLGTTEA--TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDM-TG  115 (355)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHH-HS
T ss_pred             HHHHHHHHHHHHCCCCCchhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhc-CC
Confidence            3344455555555432211111  13356678899999999999999999999877433   332   467788888 77


Q ss_pred             CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH
Q 035507          389 TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE  468 (684)
Q Consensus       389 ~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~  468 (684)
                      +++-++..|+.+++++....      ....+.+.+.+.+.+.++.|+..|+.+..++. ...++..+     +++..+-+
T Consensus       116 ~N~~iR~lALRtL~~I~~~~------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~-~~~pe~v~-----~~~~~l~~  183 (355)
T 3tjz_B          116 KEDSYRGPAVRALCQITDST------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLL-KCSFDVVK-----RWVNEAQE  183 (355)
T ss_dssp             SCHHHHHHHHHHHHHHCCTT------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHT-TTCHHHHH-----TTHHHHHH
T ss_pred             CcHhHHHHHHHHHhcCCCHH------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-ccCHHHHH-----HHHHHHHH
Confidence            88899999999999997663      45678888999999999999999999999999 76666543     68899999


Q ss_pred             hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCC--ChhHHHHHHHHHHHHhcCC-hHHHHHHHHh
Q 035507          469 LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH--KNSIKKEVSWIISNIACGN-REQIQAVIDA  545 (684)
Q Consensus       469 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~  545 (684)
                      ++.+.++.++..|+.++..+...+..         .+..++..+....  ++-.+-.....++.++..+ +.     ...
T Consensus       184 ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~  249 (355)
T 3tjz_B          184 AASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDS  249 (355)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------
T ss_pred             HhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHH
Confidence            99999999999999999999875532         2233444443320  2333333333332333332 11     123


Q ss_pred             CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccccc
Q 035507          546 GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKN  625 (684)
Q Consensus       546 g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~  625 (684)
                      .+++.+...+++.++.|.-+|+.++..+.... ...     -..++..|..++.++++.++..++..|..+....+.   
T Consensus       250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~---  320 (355)
T 3tjz_B          250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS---  320 (355)
T ss_dssp             -------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC------------
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH---
Confidence            46677777788889999999999999985521 111     123567788888899999999999999988876433   


Q ss_pred             CCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 035507          626 TDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKIL  668 (684)
Q Consensus       626 ~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii  668 (684)
                                   .+.++.  ..|+.+..++|..|...|...+
T Consensus       321 -------------~v~~~n--~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          321 -------------AVTACN--LDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             -------------------------------------------
T ss_pred             -------------HHHHHH--HHHHHHccCCcHhHHHHHHHHh
Confidence                         233222  3478888999999998887654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.64  E-value=8.7e-07  Score=90.45  Aligned_cols=277  Identities=13%  Similarity=0.047  Sum_probs=164.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      .....+++.+.++|...+.-....+..++...+..+      =++..|.+=+++++ +-+|-.|+++|++|..  ++...
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~  138 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ  138 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence            456788899999999999888888877665532222      25678888888888 8999999999999987  23222


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                           ...+.+.+.|.+.++.||..|+.+...+....|+   .+  .+.+..+-..+ .+.++.+..+|+.+|..++..+
T Consensus       139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v--~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV--KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH--HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH--HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence                 2356677888999999999999999999877755   22  25777777777 6778889999999999998763


Q ss_pred             CCCChhhhhchHHHHHHHhcCC---cHHHHHHHHHHHHhhccCCC-hHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSN---DEQVLTDACWALFGLSGDRN-NDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT  484 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~al~~L~~L~~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  484 (684)
                              ...+..++..+...   ++..+...++.+..++ ..+ +.     ....+++.+..+|++.++.|...|+++
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~-~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQL-EDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------CCCCCSSHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhc-cccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence                    11334444444332   5666667777776666 333 11     223577889999999999999999999


Q ss_pred             HHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHH
Q 035507          485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKE  564 (684)
Q Consensus       485 L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~  564 (684)
                      +..+......    .. ..++..+..++.++ ++.+|-.|...|..++...|..++.     .-.-+.+++++++..+.-
T Consensus       274 I~~l~~~~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t  342 (355)
T 3tjz_B          274 IVNLPGCSAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT  342 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred             HHhccCCCHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence            9888652221    11 23566777778888 8999999999999998876655442     234556677777766554


Q ss_pred             HHHHHH
Q 035507          565 EAAWAI  570 (684)
Q Consensus       565 ~a~~aL  570 (684)
                      -|..+|
T Consensus       343 ~Aittl  348 (355)
T 3tjz_B          343 LAITTL  348 (355)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            444333

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.61  E-value=4e-06  Score=74.34  Aligned_cols=216  Identities=14%  Similarity=0.139  Sum_probs=164.9

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC-CCChHHHHHHHHHHHHhhCCCCC
Q 035507          289 ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA-SPSDDVREQAVWALGNVAADSSG  367 (684)
Q Consensus       289 ~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~-~~~~~v~~~a~~~L~nLa~~~~~  367 (684)
                      +..++..++.+|.++-+ .+|..|+.++..++..-++.....     +..|+.+++ +....+......++|.++...|+
T Consensus        30 d~~~l~~lI~~LDDDlw-tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDLW-TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHHH-HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            34578889999988774 899999999999999776655443     455666654 46666767888999999987765


Q ss_pred             CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 035507          368 CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG  447 (684)
Q Consensus       368 ~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~  447 (684)
                      ..     .+.++.+.... .-.++.++.+..++|..+.+..|    ....+++.-+..++.++|..-+..|+..++.+. 
T Consensus       104 ~v-----~~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG-  172 (253)
T 2db0_A          104 LV-----KSMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG-  172 (253)
T ss_dssp             HH-----HHHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC-
T ss_pred             HH-----HhhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh-
Confidence            21     12355555555 44589999999999999998754    345677778888999999888888888888887 


Q ss_pred             CCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507          448 DRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI  527 (684)
Q Consensus       448 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~  527 (684)
                      .+.....     ..++|+|..+|.+.+.-+|..|..+|++++..++..+..      +...++=+.+. +..+++..-.+
T Consensus       173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv~~~V~eg  240 (253)
T 2db0_A          173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLVNKTVKEG  240 (253)
T ss_dssp             TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHHHHHHHHH
T ss_pred             ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHHHHHHHHH
Confidence            5444332     257899999999999999999999999999999875543      33455556777 78888888888


Q ss_pred             HHHHhc
Q 035507          528 ISNIAC  533 (684)
Q Consensus       528 L~nl~~  533 (684)
                      |+.++.
T Consensus       241 L~rl~l  246 (253)
T 2db0_A          241 ISRLLL  246 (253)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.60  E-value=2.3e-07  Score=90.85  Aligned_cols=186  Identities=12%  Similarity=0.162  Sum_probs=142.3

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhh
Q 035507          337 PIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV  416 (684)
Q Consensus       337 ~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~  416 (684)
                      +.+.+.+.+.++..|..|+..|..++...+.....- ....++.+...+.++.+..++..++.++..++..-...-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            457778889999999999999999986533211100 1124556666664478899999999999999976433333456


Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC-hhh
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD-DFQ  495 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~~  495 (684)
                      ..++|.++..+.+.++.++..+..++..+. ....  .     ..+++.+...+++.++.++..++.+|+.+.... +..
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~-~~~~--~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIY-ASTS--L-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHH-TTSC--H-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HcCC--H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            889999999999999999999999999998 4332  1     236788999999999999999999999976443 321


Q ss_pred             -HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          496 -TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       496 -~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                       ....+. .++|.+..++.+. ++++|..|..+++.++.
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence             122222 5889999999988 99999999999999875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.56  E-value=8.3e-07  Score=86.89  Aligned_cols=185  Identities=15%  Similarity=0.187  Sum_probs=141.7

Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHHhhccCCChHHHHHHH
Q 035507          380 PLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALFGLSGDRNNDKIQAVI  458 (684)
Q Consensus       380 ~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~~L~~~~~~~~~~~~~  458 (684)
                      .+...+ ++.+...++.++..|..++.+.+.........+++.+...+. +.+..++..++.+++.++ ..-........
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la-~~l~~~~~~~~   96 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLA-KGLAKRFSNYA   96 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH-HHHGGGGHHHH
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHHhhhHHHHH
Confidence            356666 678889999999999999876322111223577888999995 899999999999999999 33222222222


Q ss_pred             HhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChH
Q 035507          459 EAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NRE  537 (684)
Q Consensus       459 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  537 (684)
                       ..++|.++..+.+++..+|..|..++..++....  ..     .+++.+...+.+. ++.+|..++..|+.+... .++
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence             2478999999999999999999999999987543  11     2678889999988 999999999999997653 333


Q ss_pred             H-HHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507          538 Q-IQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       538 ~-~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~  576 (684)
                      . ....+. .++|.|..++.+.+.++|..|..+++.++..
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2 222233 4899999999999999999999999999863

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.56  E-value=1.4e-05  Score=90.55  Aligned_cols=272  Identities=13%  Similarity=0.113  Sum_probs=187.4

Q ss_pred             CHHHHHHhhc---CCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCC--------hHHHHHHHHHHHH
Q 035507          292 VVPRFVEFLM---REDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPS--------DDVREQAVWALGN  360 (684)
Q Consensus       292 ~i~~Lv~lL~---~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~--------~~v~~~a~~~L~n  360 (684)
                      ++..|-.+|.   +++ +.++.-|+.+|+.+..+...        .++..|...|.+++        +.++..|+..||-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4566667775   344 89999999999999986542        14677777776544        6788899999998


Q ss_pred             hhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh-cCCcHHHHHHHH
Q 035507          361 VAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI-HSNDEQVLTDAC  439 (684)
Q Consensus       361 La~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~al  439 (684)
                      +...+.  ++.     ++..|...+. +.+..+...|+.+|+.+-.+..+      ..++..|++.+ .+.+..++..++
T Consensus       464 a~~GS~--~ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSA--NIE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCC--CHH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCC--CHH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            764432  122     3567777774 33445566888888876544321      22344444433 356788999999


Q ss_pred             HHHHhhccCCChHHHHHHHHhchHHHHHHhcC-CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCCh
Q 035507          440 WALFGLSGDRNNDKIQAVIEAGVCGRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN  518 (684)
Q Consensus       440 ~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~  518 (684)
                      .+|+.+. -+.++.         ++.+++.|. +.++.+|..|+.+++--..+.....       .+..|+..+.+..+.
T Consensus       530 lgLGll~-~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALIN-YGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHT-TTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCH
T ss_pred             HHHHhhh-CCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcH
Confidence            9999887 555544         344444443 5678888888888876655544221       345555555443378


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHh-ccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 035507          519 SIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLL-QNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDL  597 (684)
Q Consensus       519 ~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~l  597 (684)
                      .+|+.|+.+|+.|+.+.++         .++.++..+ ++.++.+|..|++|++.+..+....        .+++.|..+
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L  655 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPL  655 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHH
Confidence            8999999999999877643         456666644 5679999999999999998643211        146677888


Q ss_pred             ccCCChHHHHHHHHHHHHHHhcc
Q 035507          598 LQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       598 L~~~~~~v~~~al~~L~~il~~~  620 (684)
                      .++.+..|+..|+.+|..+..-.
T Consensus       656 ~~D~d~~Vrq~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          656 TKDPVDFVRQAAMIALSMILIQQ  678 (963)
T ss_dssp             HTCSSHHHHHHHHHHHHHHSTTC
T ss_pred             ccCCCHHHHHHHHHHHHHHhcCC
Confidence            89999999999999999887543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.53  E-value=2.2e-05  Score=81.82  Aligned_cols=321  Identities=12%  Similarity=0.139  Sum_probs=197.9

Q ss_pred             cCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCC---CCchhHhhcCC-HHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          333 HDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSS---GCRDLVLSEGA-LIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       333 ~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~---~~r~~i~~~g~-l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..++..++.+|.. .+.++.+.++..+.-+..+++   .....+..... ...+........+.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3567888888875 778888899988888887766   21111122211 122333332334444455666666666544


Q ss_pred             CCCCChhhhhchHH--HHHHHhcC-CcHHHHHHHHHHHHhhccCCChHHHHHHHHhc--hHHHHHHhcC----CC-----
Q 035507          408 KPRPLFDQVRPALP--ALAQLIHS-NDEQVLTDACWALFGLSGDRNNDKIQAVIEAG--VCGRLVELLG----HP-----  473 (684)
Q Consensus       408 ~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g--~l~~L~~lL~----~~-----  473 (684)
                      .+. ........+.  -+...+.. ++.+.+.-++.++..+.  ..++.+..+.+.+  .++.++.++.    +.     
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll--~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELA--VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHH--TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHh--cchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            322 3333344444  34444554 23455666888888888  4566777676542  4666654432    11     


Q ss_pred             --------CcccHhHHHHHHHHHHcCChhhHHHHHhcCCh--HHHHHHhccCCChhHHHHHHHHHHHHhcCCh----HHH
Q 035507          474 --------SPSVLTPALWTVGNIVMGDDFQTQCIINHGAV--PCLLALLIHNHKNSIKKEVSWIISNIACGNR----EQI  539 (684)
Q Consensus       474 --------~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~  539 (684)
                              ...++..++.++.-++...+ ..+.+...++.  +.|+.++......++-+-+..++.|+....+    ..+
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence                    23457788999988876544 55666665543  6677777766578999999999999987542    222


Q ss_pred             H-HHHHhCCHHHHHHHhccC---CHhHHHHHHHHHHHhh---------------------cCC----CH----HHHHHHH
Q 035507          540 Q-AVIDAGLIGPLVNLLQNA---EFDIKEEAAWAISNAS---------------------SRG----TH----DQIKYLV  586 (684)
Q Consensus       540 ~-~l~~~g~l~~Li~ll~~~---~~~v~~~a~~aL~nl~---------------------~~~----~~----~~~~~l~  586 (684)
                      . .++..++++ +++.|...   |+++....-.....+-                     ...    ++    ++..++.
T Consensus       312 ~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          312 KQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence            3 233444544 55555442   6666544333222221                     110    11    1122222


Q ss_pred             HC--CChHHHHhhccC----------CChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhc
Q 035507          587 TE--GCIKPLCDLLQC----------ADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQS  654 (684)
Q Consensus       587 ~~--g~l~~L~~lL~~----------~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~  654 (684)
                      +.  .+++.|.++|++          .|+.+...|+.=+..+++.-+..             ...+++.|+-+.+..|..
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~  457 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLN  457 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTS
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhc
Confidence            22  247888888873          47888999999999999886643             367889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 035507          655 HDNNEIHEKSVKILETY  671 (684)
Q Consensus       655 ~~~~~i~~~a~~ii~~~  671 (684)
                      |+|++|+..|...+++.
T Consensus       458 h~d~~Vr~~AL~avQkl  474 (480)
T 1ho8_A          458 HSDSRVKYEALKATQAI  474 (480)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999888775

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.52  E-value=3.1e-06  Score=97.14  Aligned_cols=308  Identities=13%  Similarity=0.166  Sum_probs=215.5

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc-
Q 035507          246 TKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS-  324 (684)
Q Consensus       246 ~~~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~-  324 (684)
                      .....+..+++.+...+......|+..+..++.......  .+..+++..+.+.+.+..++   +.|+.++..++.... 
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~   85 (986)
T 2iw3_A           11 QSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNL   85 (986)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTC
T ss_pred             chHHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCC
Confidence            334466777777776556666778888888776543111  11125778888888776523   889999999995321 


Q ss_pred             --hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHH
Q 035507          325 --ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLS  402 (684)
Q Consensus       325 --~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~  402 (684)
                        ..-..++  +.+|.++....+....|++.|..++..++..-+...  +  ...++.|+..+.....-..+..|+.++.
T Consensus        86 ~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~  159 (986)
T 2iw3_A           86 SPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFS  159 (986)
T ss_dssp             CTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence              2222222  678999999888889999999999888875544321  1  3458889999966667788999999999


Q ss_pred             HhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHH
Q 035507          403 NLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPAL  482 (684)
Q Consensus       403 nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al  482 (684)
                      .|+...+.........++|.+...+.+..+++...|..++..+|..-.+..++     ..+|.|++.+.+++.  ...++
T Consensus       160 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~  232 (986)
T 2iw3_A          160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETV  232 (986)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHH
T ss_pred             HHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHH
Confidence            99976543344456889999999999999999999999988877222232222     578999999988743  44445


Q ss_pred             HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CChHHHHHHHHhCCHHHHHHHhccC-C
Q 035507          483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GNREQIQAVIDAGLIGPLVNLLQNA-E  559 (684)
Q Consensus       483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~g~l~~Li~ll~~~-~  559 (684)
                      ..|+.-+--.. .....+ +=.+|.|..-|... ...+++.++-++.|++.  .+|.....++- .++|.+.+..... +
T Consensus       233 ~~l~~~tfv~~-v~~~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~  308 (986)
T 2iw3_A          233 HLLGATTFVAE-VTPATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIAD  308 (986)
T ss_dssp             HHHTTCCCCSC-CCHHHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCS
T ss_pred             HHhhcCeeEee-ecchhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCC
Confidence            55544332221 111110 01467777788777 88899999999999997  66666666554 5888888877664 9


Q ss_pred             HhHHHHHHHHHHHhhc
Q 035507          560 FDIKEEAAWAISNASS  575 (684)
Q Consensus       560 ~~v~~~a~~aL~nl~~  575 (684)
                      |++|..|..|+..+..
T Consensus       309 pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          309 PEAREVTLRALKTLRR  324 (986)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999888854

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.52  E-value=1.1e-06  Score=86.14  Aligned_cols=194  Identities=11%  Similarity=0.096  Sum_probs=142.8

Q ss_pred             HHHHhcCCCChHHHHHHHHHHHH-hhCCCCCCchhHhh-cCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC-CCCh-
Q 035507          338 IFVKLLASPSDDVREQAVWALGN-VAADSSGCRDLVLS-EGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP-RPLF-  413 (684)
Q Consensus       338 ~Li~lL~~~~~~v~~~a~~~L~n-La~~~~~~r~~i~~-~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~-~~~~-  413 (684)
                      .+-..+.+.++.-|..|+..|+. ++...+.......+ ...+..|...+..+.+..++..|+.+++.++.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35566788999999999999999 87554432210011 12456666677567888899999999999997654 3333 


Q ss_pred             hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh
Q 035507          414 DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD  493 (684)
Q Consensus       414 ~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  493 (684)
                      .....++|.++..+.+..+.++..+..++..++ ...+.....-.-..+++.|...|++.++.++..++.+|+.++....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~-~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTIC-KYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHH-HHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            566789999999999999999999888888877 3221100000011367889999999999999999999999986655


Q ss_pred             h---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          494 F---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       494 ~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      .   .....+...++|.+.+++.+. ++.+|..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            2   232333357999999999998 99999999999999875

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.50  E-value=2.4e-06  Score=79.31  Aligned_cols=184  Identities=16%  Similarity=0.172  Sum_probs=149.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+..+..+|...|+.++..|+.++.+++..-+...+...-..+++.++.++++.+ ..+...|+.||..+..+.+-....
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHHH
Confidence            6788999999999999999999999999886544455555668999999998888 899999999999999976655544


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      +..  ++.+|..++.++++-+++.|+..++.+--..+       ..+++..+..++ .+.+..++..++.++.+++....
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC
Confidence            442  36788899999999999999999999922221       122456777777 89999999999999999998752


Q ss_pred             CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          410 RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      .  ......++.-+..++.++|+.++..|+.++-.+.
T Consensus       183 D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il  217 (265)
T 3b2a_A          183 D--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL  217 (265)
T ss_dssp             S--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             C--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            2  2334566667778899999999999999999988

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.37  E-value=8e-08  Score=84.30  Aligned_cols=122  Identities=19%  Similarity=0.179  Sum_probs=94.0

Q ss_pred             HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC
Q 035507          289 ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC  368 (684)
Q Consensus       289 ~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~  368 (684)
                      ....++.++.+|++++ +.+|..|+++|..+..            ..++.|+.+|.++++.+|..|+++|+++..     
T Consensus        10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             -----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----
T ss_pred             ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Confidence            3456788999999887 7999999999987654            237899999999999999999999999852     


Q ss_pred             chhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 035507          369 RDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGL  445 (684)
Q Consensus       369 r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L  445 (684)
                            ...++.|+..+ .+++..++..++|+|..+..          ...++.|..++.++++.++..++++|..+
T Consensus        72 ------~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ------ERAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  12478888888 67889999999999999862          35789999999999999999999998764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.35  E-value=5.6e-06  Score=81.10  Aligned_cols=190  Identities=11%  Similarity=0.071  Sum_probs=138.6

Q ss_pred             HHHhccCCchHHHHHHHHHHHH-hccCCCCCC--hhhhhchHHHHHHHh-cCCcHHHHHHHHHHHHhhccCCCh-HHHH-
Q 035507          382 LAQLNEHTELSMLRIATTTLSN-LCRGKPRPL--FDQVRPALPALAQLI-HSNDEQVLTDACWALFGLSGDRNN-DKIQ-  455 (684)
Q Consensus       382 l~~L~~~~~~~v~~~a~~~L~n-L~~~~~~~~--~~~~~~~l~~L~~lL-~~~d~~v~~~al~~L~~L~~~~~~-~~~~-  455 (684)
                      -..+ .+.+..-++.++..|.. ++.+.+...  ......++..+.+.+ .+.+..++..|+.+++.++ .+-. .... 
T Consensus        22 ~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la-~~l~~~~f~~   99 (249)
T 2qk1_A           22 QERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC-DKLKTPGFSK   99 (249)
T ss_dssp             HHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH-HHHCTTTSCH
T ss_pred             HHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HhcccccccH
Confidence            3444 67788889999999999 876533222  222346688888888 6889999999999999998 3221 1111 


Q ss_pred             HHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCC
Q 035507          456 AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN  535 (684)
Q Consensus       456 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  535 (684)
                      ... .-++|.++..+.+..+.++..+..++..++...+.....-.-..+++.|...|.+. ++.+|..++.+|+.++...
T Consensus       100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            122 23789999999999999999999999888864421110000002577888899998 9999999999999998643


Q ss_pred             h---HHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          536 R---EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       536 ~---~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      +   ......+...++|.|..++.+.+.++|..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3   444444434699999999999999999999999999875

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.24  E-value=2.2e-07  Score=81.43  Aligned_cols=120  Identities=17%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             hchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHH
Q 035507          460 AGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI  539 (684)
Q Consensus       460 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  539 (684)
                      ...++.+..+|.++++.+|..|+++|+.+..  +          .++.|...|.++ ++.+|..|+++|+++..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC------
Confidence            4567889999999999999999999987632  1          258899999988 99999999999999853      


Q ss_pred             HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHH
Q 035507          540 QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLEN  615 (684)
Q Consensus       540 ~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~  615 (684)
                           ...++.|+..+.++++.+|..|+++|+++..   ++         .++.|..+++++++.++..+..+|.+
T Consensus        72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 1257889999999999999999999999852   22         46788888999999999999988764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.14  E-value=0.00028  Score=73.64  Aligned_cols=295  Identities=15%  Similarity=0.141  Sum_probs=180.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHH--HHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcC--
Q 035507          259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVP--RFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHD--  334 (684)
Q Consensus       259 ~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~--~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g--  334 (684)
                      .++++-.+..|...+..+........+.+  ..++.  .++..|........+..|+.+|..+.. .++.|..+.+.+  
T Consensus       135 ~~dd~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~  211 (480)
T 1ho8_A          135 KGDFQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKK  211 (480)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHH
T ss_pred             cccchHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccc
Confidence            33444445555555545443332221111  11222  455566653224667789999999998 888998887653  


Q ss_pred             ChHHHHHhcCC-----------------CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCH--HHHHHHhccCCchHHHH
Q 035507          335 AVPIFVKLLAS-----------------PSDDVREQAVWALGNVAADSSGCRDLVLSEGAL--IPLLAQLNEHTELSMLR  395 (684)
Q Consensus       335 ~i~~Li~lL~~-----------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l--~~Ll~~L~~~~~~~v~~  395 (684)
                      .++.++.++..                 ....++.+++.+++-++-..+. .+.+...+..  ..|+..+.....+.+.|
T Consensus       212 ~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~-~~~l~~~~i~~~~~L~~i~k~s~KEKvvR  290 (480)
T 1ho8_A          212 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF-ANELVQKYLSDFLDLLKLVKITIKEKVSR  290 (480)
T ss_dssp             HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH-HHHHHTTSHHHHHHHHHHHHHCCSHHHHH
T ss_pred             hhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH-HHHHHhcchHHHHHHHHHHHhhccchhHH
Confidence            36666543321                 1356789999999999877643 3444444432  56677777788899999


Q ss_pred             HHHHHHHHhccCCCCCChh------hhhchHHHHHHHhc---CCcHHHHHHHHHHHHhhccC------CChHHHHHHHHh
Q 035507          396 IATTTLSNLCRGKPRPLFD------QVRPALPALAQLIH---SNDEQVLTDACWALFGLSGD------RNNDKIQAVIEA  460 (684)
Q Consensus       396 ~a~~~L~nL~~~~~~~~~~------~~~~~l~~L~~lL~---~~d~~v~~~al~~L~~L~~~------~~~~~~~~~~~~  460 (684)
                      .++.++.|+....+.....      ...++++ ++..|.   -.|+++.++.-.....|- .      .-+++..     
T Consensus       291 v~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~-~~~~~ltsfDeY~~-----  363 (480)
T 1ho8_A          291 LCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILE-NEYQELTSFDEYVA-----  363 (480)
T ss_dssp             HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHH-HHHHTCCHHHHHHH-----
T ss_pred             HHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHH-HHHHhcccHHHHHH-----
Confidence            9999999999875322111      1133444 444443   356777665544333322 0      0111111     


Q ss_pred             chHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc---------CCChhHHHHHHHHHHHH
Q 035507          461 GVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH---------NHKNSIKKEVSWIISNI  531 (684)
Q Consensus       461 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl  531 (684)
                         +..-..|.. +|.-+.+..| --|...-.+...+      ++..|+++|.+         +.++.+..-||.=++.+
T Consensus       364 ---El~sG~L~W-SP~H~se~FW-~ENa~kf~e~~~~------llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digef  432 (480)
T 1ho8_A          364 ---ELDSKLLCW-SPPHVDNGFW-SDNIDEFKKDNYK------IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHV  432 (480)
T ss_dssp             ---HHHHTCCCC-CGGGGCHHHH-HHHSGGGSSGGGH------HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             ---HHhcCCccc-CCCccchhHH-HHHHHHHHhcchH------HHHHHHHHHhhhccccccccCCCcceEEeecccHHHH
Confidence               111122333 2322333333 3344333333332      56788888863         12678888999999999


Q ss_pred             hcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          532 ACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       532 ~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      +...|..+..+-+.|+=..+++++.++|++|+.+|+.|+..+..
T Consensus       433 vr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          433 VELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99888888877788999999999999999999999999988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.08  E-value=0.00039  Score=79.98  Aligned_cols=297  Identities=13%  Similarity=0.132  Sum_probs=198.3

Q ss_pred             HHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC--CCCChhhh
Q 035507          339 FVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK--PRPLFDQV  416 (684)
Q Consensus       339 Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~--~~~~~~~~  416 (684)
                      +.+-+...+..-+..++..+.++.......+.  ...+.+..+...+....+.   +.|+.++..+|...  ........
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEHD--VPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS--CCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccccc--cchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence            33334433333445677777777654322221  2235667777777333233   89999999999665  22334444


Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-CcccHhHHHHHHHHHHcCChhh
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-SPSVLTPALWTVGNIVMGDDFQ  495 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~  495 (684)
                      -+.+|.++....+.+..|+..|-.++..+....++...     ..++|.|+..|.+. .+..+..|+.++..++...+.+
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence            57889999998888899998888777766612233222     35688888888654 6889999999999999766655


Q ss_pred             HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc--CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHh
Q 035507          496 TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC--GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNA  573 (684)
Q Consensus       496 ~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl  573 (684)
                      ...-+ ..++|.+...+.+. .++|++.|..++..+|.  ++.+.      ...+|.|++.+.+++.  ..++...|+.-
T Consensus       169 ~~~~~-~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          169 VALRM-PELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             HHHHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             HHHhc-cchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence            44333 25889999999998 99999999999999986  44332      2479999999987743  45555555544


Q ss_pred             hcCC--CHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHH
Q 035507          574 SSRG--THDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIEN  651 (684)
Q Consensus       574 ~~~~--~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~  651 (684)
                      +-..  +......     .++.|..-|......+...+.-++.|+++.-+.-.       ...+|..     ..+..++.
T Consensus       239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-------~~~~f~~-----~l~p~~~~  301 (986)
T 2iw3_A          239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-------VIAPFLG-----KLLPGLKS  301 (986)
T ss_dssp             CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHT-----TTHHHHHH
T ss_pred             eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-------HHhhhhh-----hhhhHHHH
Confidence            3322  2222222     35666777888899999999999999998765431       2222332     34566666


Q ss_pred             h-hcCCCHHHHHHHHHHHHHhc
Q 035507          652 L-QSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       652 L-~~~~~~~i~~~a~~ii~~~f  672 (684)
                      . ....+||+++.|.+.++...
T Consensus       302 ~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          302 NFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HTTTCCSHHHHHHHHHHHHHHH
T ss_pred             HhhccCCHHHHHHHHHHHHHHH
Confidence            4 56789998888877777663

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.99  E-value=0.00022  Score=84.37  Aligned_cols=330  Identities=9%  Similarity=0.064  Sum_probs=176.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCC------C------cHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCch
Q 035507          260 SDDNNLQLEATTQFQKLLSIES------M------PIEEVIESGVVPRFVEFLMRE--DYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       260 s~~~~~~~~a~~~L~~l~s~~~------~------~~~~ii~~g~i~~Lv~lL~~~--~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      +.++..+..|+.++..++....      .      ....++..-++|    .|.++  ..+.+|..|+|+++.++..-. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~-  490 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT-  490 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence            5678889999999998875321      1      222222222333    34555  148999999999999998421 


Q ss_pred             hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-------CCC-chhHhh--cCCHHHHHHHhccCC----ch
Q 035507          326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS-------SGC-RDLVLS--EGALIPLLAQLNEHT----EL  391 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-------~~~-r~~i~~--~g~l~~Ll~~L~~~~----~~  391 (684)
                       .. . -..+++.++..|.+++..|+..|+++|.+++...       +.+ ++.+..  ...+..|+..+....    +.
T Consensus       491 -~~-~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~  567 (960)
T 1wa5_C          491 -KA-Q-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL  567 (960)
T ss_dssp             -HH-H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             -HH-H-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence             11 1 2245788888888888999999999999998642       121 222211  123344445553321    00


Q ss_pred             HHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-----CCcHHHHHHHHHHHHhhccCC-ChHHHHHHHHhchHHH
Q 035507          392 SMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-----SNDEQVLTDACWALFGLSGDR-NNDKIQAVIEAGVCGR  465 (684)
Q Consensus       392 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~al~~L~~L~~~~-~~~~~~~~~~~g~l~~  465 (684)
                      .....+..++..++.............+++.+...+.     .+++.....++.+++.++ .. .++... -+...++|.
T Consensus       568 ~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~-~~~~~~~~~-~~~~~~~p~  645 (960)
T 1wa5_C          568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL-NYTQRQNLP-LLVDSMMPT  645 (960)
T ss_dssp             TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HTSCGGGHH-HHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH-hcCCcchHH-HHHHHHHHH
Confidence            1223445555554433222222234455555555443     245677778899998888 43 333333 334457888


Q ss_pred             HHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHH--HHhccCCChhHHHHHHHHHHHHhcCChHHHHHHH
Q 035507          466 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL--ALLIHNHKNSIKKEVSWIISNIACGNREQIQAVI  543 (684)
Q Consensus       466 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~--~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  543 (684)
                      +...|..........++.+++.+....+.....+.  .+++.+.  ..+... .  .....+.+|.++....++.+.. +
T Consensus       646 ~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~l~~~~~~~~~-~--~~~~~~~~L~~~~~~~~~~~~~-~  719 (960)
T 1wa5_C          646 FLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK--PLAQPLLAPNVWELK-G--NIPAVTRLLKSFIKTDSSIFPD-L  719 (960)
T ss_dssp             HHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--GGHHHHTSGGGGCCT-T--THHHHHHHHHHHHHHHGGGCSC-S
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHH--HHHHHHcCHHHhcCC-C--CchhHHHHHHHHHHhChHHHHH-H
Confidence            88888777677888888888887754311111111  1344444  333332 1  2334455555554311111000 0


Q ss_pred             HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHH-HHHHHHHCCChHHHHhhccCC-ChHHHHHHH
Q 035507          544 DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHD-QIKYLVTEGCIKPLCDLLQCA-DPKIVTVCL  610 (684)
Q Consensus       544 ~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~g~l~~L~~lL~~~-~~~v~~~al  610 (684)
                      + .++..+..++.+...  ...|.++++.++.....+ ...++-.  +++.+...+... .++++...+
T Consensus       720 ~-~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~--i~~~l~~~l~~~~~~~~~~~~l  783 (960)
T 1wa5_C          720 V-PVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQ--IAVLLLQRLQNSKTERYVKKLT  783 (960)
T ss_dssp             H-HHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHGGGSSCCHHHHHHHH
T ss_pred             H-HHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHhhCCcHhHHHHHH
Confidence            0 022223344444433  377888888887654444 3333322  455666666554 344543333

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.95  E-value=0.00056  Score=81.04  Aligned_cols=291  Identities=11%  Similarity=0.059  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC-----CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHH
Q 035507          307 QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS-----PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPL  381 (684)
Q Consensus       307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~-----~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~L  381 (684)
                      ..|..+..+|..++....+..-..+    ++.+-..+.+     ++...++.|+.+++.++.......     ...++.+
T Consensus       436 ~~R~~~~~~l~~~~~~~~~~~l~~~----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l  506 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLNDYILEIL----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRL  506 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHH----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHH
Confidence            3556677777777763321111111    2222233322     577899999999999986654311     1234444


Q ss_pred             HHHh---cc-CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHH
Q 035507          382 LAQL---NE-HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAV  457 (684)
Q Consensus       382 l~~L---~~-~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~  457 (684)
                      +..+   .. +.++.++..++|+++.++..-.. .......+++.++..+ +  +.++..|++++.+++ ..........
T Consensus       507 ~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~-~~~~~~l~p~  581 (971)
T 2x1g_F          507 MRVLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELC-RDCQLQLKPY  581 (971)
T ss_dssp             HHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHH-HHCHHHHHHH
T ss_pred             HHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHH-HHHHHhcccc
Confidence            4433   21 24788999999999999875322 1245677888888877 2  789999999999999 5443333322


Q ss_pred             HHhchHHHHHHhcCCC--CcccHhHHHHHHHHHHcCCh-hhHHHHHhcCChHHHHHH----hccCC-ChhHHHHHHHHHH
Q 035507          458 IEAGVCGRLVELLGHP--SPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLAL----LIHNH-KNSIKKEVSWIIS  529 (684)
Q Consensus       458 ~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~-~~~~~~i~~g~l~~L~~l----L~~~~-~~~v~~~a~~~L~  529 (684)
                      .+ .++..+..++..+  +...+..++.+++.++...+ +.....+. .+++.++..    +.... +...+..+...+.
T Consensus       582 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~  659 (971)
T 2x1g_F          582 AD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLN  659 (971)
T ss_dssp             HH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            22 4666777777663  45778888999999886432 22222221 233444433    33321 2223444444554


Q ss_pred             HHhc-----CC-----------hHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCCh
Q 035507          530 NIAC-----GN-----------REQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCI  591 (684)
Q Consensus       530 nl~~-----~~-----------~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l  591 (684)
                      .++.     +.           ++....+ ...++|.+..++...  +..+.+.++++++.++..-..+...++-.  ++
T Consensus       660 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~--~~  736 (971)
T 2x1g_F          660 MISTLFSSLNTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQD--LC  736 (971)
T ss_dssp             HHHHHHHHHTC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHH--HH
T ss_pred             HHHHHHhhcCCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHH--HH
Confidence            4432     11           1111222 245888888888643  77999999999999775211111112111  23


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          592 KPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       592 ~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      +.+...+.....   ..+++.+..++..
T Consensus       737 ~~l~~~~~~~~~---~~~l~l~~~~i~~  761 (971)
T 2x1g_F          737 LFIVASFQTRCC---APTLEISKTAIVM  761 (971)
T ss_dssp             HHHHHHCC--CC---HHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCc---hHHHHHHHHHHHH
Confidence            444444443221   3466777766653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.93  E-value=0.00035  Score=82.62  Aligned_cols=258  Identities=9%  Similarity=0.043  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcC------CCChHHHHHHHHHHHHhhCCCCCCchhHh---h-cC
Q 035507          307 QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLA------SPSDDVREQAVWALGNVAADSSGCRDLVL---S-EG  376 (684)
Q Consensus       307 ~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~------~~~~~v~~~a~~~L~nLa~~~~~~r~~i~---~-~g  376 (684)
                      ..|..|..+|..++....   +.++. .+++.+...+.      +++...++.|+.+++.++.....+.....   . ..
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            467788888888887332   22211 12344444454      56788999999999999854321110000   0 01


Q ss_pred             CHH----HHHHHhccC--CchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507          377 ALI----PLLAQLNEH--TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN  450 (684)
Q Consensus       377 ~l~----~Ll~~L~~~--~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~  450 (684)
                      ..+    .++..+...  ..+-++..++|+++.++..-   .......+++.++..+.+++..|+..|++++.+++ ...
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~-~~~  527 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKIL-TIR  527 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TCB
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-hcc
Confidence            111    233334322  27889999999999999864   23457888999999998888999999999999988 421


Q ss_pred             -----------hHHHHHHHHhchHHHHHHhcCCCC-----cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh--
Q 035507          451 -----------NDKIQAVIEAGVCGRLVELLGHPS-----PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL--  512 (684)
Q Consensus       451 -----------~~~~~~~~~~g~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL--  512 (684)
                                 .......+ ..+++.|+.++....     ......++.+++.++....+....... .+++.|...+  
T Consensus       528 ~~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~  605 (960)
T 1wa5_C          528 ESNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTI  605 (960)
T ss_dssp             SCSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHH
T ss_pred             cccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHH
Confidence                       11111111 146667777776531     113456777777765422211111111 1334444444  


Q ss_pred             --ccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          513 --IHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       513 --~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                        .++.++..+..++.+++.++.. .++....+ ...++|.+..++.....+....+...+..+..
T Consensus       606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence              3343667777788888888764 44444433 44588999999987766777777777777664

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.87  E-value=0.0025  Score=74.90  Aligned_cols=343  Identities=11%  Similarity=0.108  Sum_probs=190.5

Q ss_pred             HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHhcCC---c--
Q 035507          252 PMMVAGVW-SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFV-EFLMREDYPQLQFQAAWALTNIASGT---S--  324 (684)
Q Consensus       252 ~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv-~lL~~~~~~~v~~~A~~~L~~l~~~~---~--  324 (684)
                      +.+...+. +.++++...++.++...++-  -+...+++.++++.+. .+|.  + ++++..|+.+|..+.+..   +  
T Consensus       197 ~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~  271 (1023)
T 4hat_C          197 KLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDND  271 (1023)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchH
Confidence            33334443 45567777788888887763  3567788889999999 8885  3 789999999999999732   2  


Q ss_pred             hhHHHHHh--cCChHHH--------------HHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc----CC----HHH
Q 035507          325 ENTKVVIE--HDAVPIF--------------VKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE----GA----LIP  380 (684)
Q Consensus       325 ~~~~~i~~--~g~i~~L--------------i~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~----g~----l~~  380 (684)
                      .....+..  .+.+..+              ...-...+.+..+..+..+..+.....   ..+...    +.    +..
T Consensus       272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~---~li~~~~~~~~~l~~~l~~  348 (1023)
T 4hat_C          272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR---ALLESDESLRELLLNAHQY  348 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG---GGGTSCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH---HHHhCCcchhHHHHHHHHH
Confidence            11111110  0111111              111122345556666666655543221   111111    11    223


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHhccCCC--CCChhhh----hchHHHHHHHhcCCc--------------------HH-
Q 035507          381 LLAQLNEHTELSMLRIATTTLSNLCRGKP--RPLFDQV----RPALPALAQLIHSND--------------------EQ-  433 (684)
Q Consensus       381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~--~~~~~~~----~~~l~~L~~lL~~~d--------------------~~-  433 (684)
                      ++.. ...++.++...++..-..++....  .......    ..+++.++.-+..+.                    ++ 
T Consensus       349 Ll~~-~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~  427 (1023)
T 4hat_C          349 LIQL-SKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTI  427 (1023)
T ss_dssp             HHHH-TTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGH
T ss_pred             HHHh-hCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHH
Confidence            3332 245577777776665555554221  1111222    334444444433221                    00 


Q ss_pred             HH----HHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHH
Q 035507          434 VL----TDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPC  507 (684)
Q Consensus       434 v~----~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~  507 (684)
                      ..    .+++..+.++.   .++..+     -+++.+.+.+.+  .++..++.+++++|.++.+.......-.-..+++.
T Consensus       428 ~~f~~~Rd~L~~l~~l~---~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~  499 (1023)
T 4hat_C          428 QLYKSEREVLVYLTHLN---VIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD  499 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHC---HHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccC---HHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            11    12333333332   111111     123444444543  57889999999999999876543222222357888


Q ss_pred             HHHHhcc-----CCChhHHHHHHHHHHHHhc---CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCH
Q 035507          508 LLALLIH-----NHKNSIKKEVSWIISNIAC---GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTH  579 (684)
Q Consensus       508 L~~lL~~-----~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~  579 (684)
                      |+.++.+     + ...++..++|+++..+.   ..++...     .++..|++.+...++.++..|++++.+++..+..
T Consensus       500 Ll~l~~~~~~~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          500 LLDLCVKKRGKDN-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHHHHHHCCSHHH-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHhhhccccCcc-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888864     3 45567788999998865   2333322     2456677777777889999999999999974332


Q ss_pred             HHHHHHHH----------CCChHHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          580 DQIKYLVT----------EGCIKPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       580 ~~~~~l~~----------~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                          .+..          ..++..+......-+++-+..+.+++..++....
T Consensus       574 ----~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          574 ----HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             ----HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ----HhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence                2221          1123333444444567777888888888887654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.80  E-value=0.0082  Score=70.59  Aligned_cols=347  Identities=6%  Similarity=0.059  Sum_probs=183.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHhcCCchhHHHHHhcCCh
Q 035507          261 DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRE----DYPQLQFQAAWALTNIASGTSENTKVVIEHDAV  336 (684)
Q Consensus       261 ~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~----~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i  336 (684)
                      .++..+.+++++++.++....+....-.-..+++.|+.++.+.    ....++..++|+++..+.--..+... . ...+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L-~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-H-HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-H-HHHH
Confidence            5799999999999998765443323233345678888887641    11345567789998877611111111 1 1345


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh------cCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccC
Q 035507          337 PIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS------EGALIPLLAQLN---EHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       337 ~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~------~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..|+..+..+++.+++.|++++.+||.+.   +..+..      ...++.++..+.   ..-+..-...+..+++.+...
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c---~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHH---HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            66677777778999999999999999653   333321      113444444432   234556667888889998887


Q ss_pred             CCCCC--hhhhhchHHHHHH----Hhc----C----Cc---HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc
Q 035507          408 KPRPL--FDQVRPALPALAQ----LIH----S----ND---EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL  470 (684)
Q Consensus       408 ~~~~~--~~~~~~~l~~L~~----lL~----~----~d---~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL  470 (684)
                      .+...  ......+++.+..    +..    .    .|   .......+.++..++ ..-.......+. .+.+.++++.
T Consensus       620 ~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~-~~lg~~f~~~~~-~i~~~~l~~y  697 (1023)
T 4hat_C          620 ERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVC-TSMGADFYPQLG-HIYYNMLQLY  697 (1023)
T ss_dssp             CCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHH-HHHGGGGHHHHH-HHHHHHHHHH
T ss_pred             CCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHH-HHHHHHHHHH
Confidence            64322  1122333333222    221    0    01   123344444444444 111100000000 1222222221


Q ss_pred             CC------------CC-----c------ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc----cC----CChh
Q 035507          471 GH------------PS-----P------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----HN----HKNS  519 (684)
Q Consensus       471 ~~------------~~-----~------~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~----~~----~~~~  519 (684)
                      +.            +.     +      .++...++.+.......++ .+ .+...++|.++..+-    ..    .++.
T Consensus       698 ~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~-~~-~~~~~~~~~l~~~vl~dY~~~~~~~r~~~  775 (1023)
T 4hat_C          698 RAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARN-LD-DVVKVLVEPLLNAVLEDYMNNVPDARDAE  775 (1023)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSC-HH-HHHHHTHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred             HHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC-HH-HHHHHhHHHHHHHHHHHHHhCChhhccHH
Confidence            11            10     1      1122222322222222211 11 122345666655441    11    1344


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC---CHhHHHHHHHHHHHhhcCC-------CHHHHHHHHHCC
Q 035507          520 IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA---EFDIKEEAAWAISNASSRG-------THDQIKYLVTEG  589 (684)
Q Consensus       520 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~g  589 (684)
                      +-.-..-.+..+...-.+.+..++++ ++..=+.+++.+   .|+.|..-...+..+....       .++..+.     
T Consensus       776 vL~l~s~iv~~~~~~~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~-----  849 (1023)
T 4hat_C          776 VLNCMTTVVEKVGHMIPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL-----  849 (1023)
T ss_dssp             HHHHHHHHHHHHGGGCHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH-----
Confidence            55555555555544444555555554 566666777653   6888877777777765432       2223222     


Q ss_pred             ChHHHHhhccCCChHHHHHHHHHHHHHHhcccc
Q 035507          590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~  622 (684)
                      +++.++-.++++.+++...++.++..++.....
T Consensus       850 ~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~  882 (1023)
T 4hat_C          850 FVDAICWAFKHNNRDVEVNGLQIALDLVKNIER  882 (1023)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHh
Confidence            566777788999999999999999999876553

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.80  E-value=0.00049  Score=68.26  Aligned_cols=185  Identities=14%  Similarity=0.127  Sum_probs=137.4

Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHH
Q 035507          421 PALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII  500 (684)
Q Consensus       421 ~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i  500 (684)
                      ..++.-|.+.+.+.+..++..|..+. ..+......++..+++..|+....+.+...+..++++++++....+ ....++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~-q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIF-QEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH-HTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHh-hcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchh
Confidence            34556666778888999999999855 4677888999999999999999999999999999999999987544 443444


Q ss_pred             -hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHH--------hC--CHHHHHHHhc---cCCHhHHHHH
Q 035507          501 -NHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID--------AG--LIGPLVNLLQ---NAEFDIKEEA  566 (684)
Q Consensus       501 -~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~g--~l~~Li~ll~---~~~~~v~~~a  566 (684)
                       ....+..+..++.+. +..|.+.|...|-.++..++.....+.+        .|  .++.|+.+|+   ..+.+++..|
T Consensus       199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence             445788899999876 8999999999999998755433333332        11  3778999997   6799999999


Q ss_pred             HHHHHHhhcCCC-HH----HHHHHHHCCChHHHHhhccCC--ChHHHHH
Q 035507          567 AWAISNASSRGT-HD----QIKYLVTEGCIKPLCDLLQCA--DPKIVTV  608 (684)
Q Consensus       567 ~~aL~nl~~~~~-~~----~~~~l~~~g~l~~L~~lL~~~--~~~v~~~  608 (684)
                      ...+-.+..+.. .+    ....+.+.|+-..+...++..  +++++..
T Consensus       278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            988877776543 23    234445566556666667654  5555543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.79  E-value=0.00072  Score=80.06  Aligned_cols=300  Identities=13%  Similarity=0.092  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc---C--CCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHH
Q 035507          306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL---A--SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIP  380 (684)
Q Consensus       306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL---~--~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~  380 (684)
                      -..++.|+.+++.++.+-.....     ..++.++.++   .  ++++.++..++|+++.++..-....+.+.  .+++.
T Consensus       478 w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~  550 (971)
T 2x1g_F          478 WTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL  550 (971)
T ss_dssp             CHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence            47889999999999985443221     2233333322   3  34889999999999999843211111111  23555


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC--CcHHHHHHHHHHHHhhccCC-ChHHHHHH
Q 035507          381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS--NDEQVLTDACWALFGLSGDR-NNDKIQAV  457 (684)
Q Consensus       381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~L~~~~-~~~~~~~~  457 (684)
                      ++..+ +   +.+...|++++.++|+.....-......++..+..++..  -+...+..++.+++.++ .. ..+.....
T Consensus       551 l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~-~~~~~~~~~~~  625 (971)
T 2x1g_F          551 LVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLM-SLLRPEEIPKY  625 (971)
T ss_dssp             HHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH-HTSCTTHHHHH
T ss_pred             HHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence            56566 2   678999999999999754222223345566666677776  35788888999998887 33 21222222


Q ss_pred             HHh---chHHHHHHhcCCC--CcccHhHHHHHHHHHH---cCCh-------------hhHHHHHhcCChHHHHHHhccC-
Q 035507          458 IEA---GVCGRLVELLGHP--SPSVLTPALWTVGNIV---MGDD-------------FQTQCIINHGAVPCLLALLIHN-  515 (684)
Q Consensus       458 ~~~---g~l~~L~~lL~~~--~~~v~~~al~~L~nl~---~~~~-------------~~~~~~i~~g~l~~L~~lL~~~-  515 (684)
                      +..   .++..+..+++..  ++..+..+..+++.++   ..-.             +.... +-..+++.+..++... 
T Consensus       626 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~  704 (971)
T 2x1g_F          626 LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWV  704 (971)
T ss_dssp             HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhcc
Confidence            221   2233333444433  2223333444444433   2110             01111 1235788888887543 


Q ss_pred             CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC-C-HHH---HHHHHHCCC
Q 035507          516 HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG-T-HDQ---IKYLVTEGC  590 (684)
Q Consensus       516 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~-~-~~~---~~~l~~~g~  590 (684)
                      .+..+.+.++++++.++..-.......+. .+++.++..+.....   ..+++.++.++... . +..   ...+.. ..
T Consensus       705 ~~~~v~e~~~~~~~~~~~~~~~~~~p~l~-~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~-~~  779 (971)
T 2x1g_F          705 EEIDVLEAACSAMKHAITNLRSSFQPMLQ-DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLR-EF  779 (971)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHC--CTHHH-HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHH-HH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhccccHH-HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHH-HH
Confidence            26789999999999986521111111111 134444444443221   34677777776632 2 111   222222 12


Q ss_pred             hHHHHhhccC-------CChHHHHHHHHHHHHHHhccccc
Q 035507          591 IKPLCDLLQC-------ADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       591 l~~L~~lL~~-------~~~~v~~~al~~L~~il~~~~~~  623 (684)
                      ...+.+++..       .+|+++......+..++......
T Consensus       780 ~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~  819 (971)
T 2x1g_F          780 IQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV  819 (971)
T ss_dssp             HHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred             HHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence            3333344433       37889999999999988876643

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.78  E-value=0.00031  Score=69.65  Aligned_cols=158  Identities=15%  Similarity=0.113  Sum_probs=127.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+..+++.|++++......|+..|..+++.+.....+++..+++..|+......+ ...+..++.+|.++.. .......
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~-~v~Gm~g  196 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLML-FVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHh-ccccccc
Confidence            4567888899888999999999999988888889999999999999999998887 8999999999999998 4444544


Q ss_pred             HH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhc----------CCHHHHHHHhc--cCCchHHHHH
Q 035507          330 VI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE----------GALIPLLAQLN--EHTELSMLRI  396 (684)
Q Consensus       330 i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~----------g~l~~Ll~~L~--~~~~~~v~~~  396 (684)
                      ++ ....|..+..++.+.+..|...|+..|..++..++.....+...          ..+..++..|.  +..|.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            54 45678999999999889999999999999987765433332221          13668888885  3678899998


Q ss_pred             HHHHHHHhccCCC
Q 035507          397 ATTTLSNLCRGKP  409 (684)
Q Consensus       397 a~~~L~nL~~~~~  409 (684)
                      +...+..+....+
T Consensus       277 amtLIN~lL~~ap  289 (339)
T 3dad_A          277 TVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhcCC
Confidence            8888877766544

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.76  E-value=0.00062  Score=80.54  Aligned_cols=338  Identities=13%  Similarity=0.055  Sum_probs=187.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc---CCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCC
Q 035507          301 MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL---ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGA  377 (684)
Q Consensus       301 ~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL---~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~  377 (684)
                      .+.+ ...++.|+++++.++.+-....     ...++.++..+   .++++.++..++|+++.++..-....+.  -...
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence            3344 6788999999999998543311     12334444433   3357889999999999987431111111  2346


Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC--CcHHHHHHHHHHHHhhccCCCh-HHH
Q 035507          378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS--NDEQVLTDACWALFGLSGDRNN-DKI  454 (684)
Q Consensus       378 l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~L~~~~~~-~~~  454 (684)
                      ++.++..+. +  +.++..|++++.++|...+..-......+++.+..++..  -+...+..++.+++.++ ...+ +..
T Consensus       531 l~~l~~~l~-~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~-~~~~~~~~  606 (963)
T 2x19_B          531 LPLVLHALG-N--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL-SALQVEEI  606 (963)
T ss_dssp             HHHHHHHTT-C--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH-TTSCHHHH
T ss_pred             HHHHHHHhC-C--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH-hcCCHHHH
Confidence            777887773 2  688999999999999754322223345666666677764  35788889999999988 4432 333


Q ss_pred             HHHHHhchHHHHHHhc----CCC-CcccHh---HHHHHHHHHHcCCh----------------------hhHHHHHhcCC
Q 035507          455 QAVIEAGVCGRLVELL----GHP-SPSVLT---PALWTVGNIVMGDD----------------------FQTQCIINHGA  504 (684)
Q Consensus       455 ~~~~~~g~l~~L~~lL----~~~-~~~v~~---~al~~L~nl~~~~~----------------------~~~~~~i~~g~  504 (684)
                      ...++ .+++.+...+    ..+ ++..+.   .++.+|+.+...-.                      ..... +-..+
T Consensus       607 ~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  684 (963)
T 2x19_B          607 LKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQV  684 (963)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHH
Confidence            33332 2444444333    222 333333   45555655543211                      00111 12245


Q ss_pred             hHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHH----hcc-CCHhHHHHHHHHHHHhhc--C
Q 035507          505 VPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNL----LQN-AEFDIKEEAAWAISNASS--R  576 (684)
Q Consensus       505 l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~l----l~~-~~~~v~~~a~~aL~nl~~--~  576 (684)
                      ++.+..++... .+..+.+.++.++..++..-.+...     ..+|.++..    ... ..+    ..++.++.++.  +
T Consensus       685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~  755 (963)
T 2x19_B          685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFA  755 (963)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhC
Confidence            66666666432 2678899999999987642111111     123433333    222 122    24444444443  2


Q ss_pred             CCH---HHHHHHHHCCChHHHHhhcc---CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHH
Q 035507          577 GTH---DQIKYLVTEGCIKPLCDLLQ---CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIE  650 (684)
Q Consensus       577 ~~~---~~~~~l~~~g~l~~L~~lL~---~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~  650 (684)
                      ..+   +....+.+ .++..+..++.   ..+|+++......+..++......--.      .......     .++.+.
T Consensus       756 ~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~------~~~~~~~-----i~~~~~  823 (963)
T 2x19_B          756 HEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC------ERLDVKA-----VFQCAV  823 (963)
T ss_dssp             TCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC------TTSCHHH-----HHHHHH
T ss_pred             CCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC------CcccHHH-----HHHHHH
Confidence            221   12222111 12333333333   247999999999999999876543210      0000111     223333


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcC
Q 035507          651 NLQSHDNNEIHEKSVKILETYWC  673 (684)
Q Consensus       651 ~L~~~~~~~i~~~a~~ii~~~f~  673 (684)
                      ....+++.++.+.+.+++.+++.
T Consensus       824 ~~l~~~~~~~~~~~l~~l~~l~~  846 (963)
T 2x19_B          824 LALKFPEAPTVKASCGFFTELLP  846 (963)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHh
Confidence            33458899999999999988764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.70  E-value=0.0047  Score=73.67  Aligned_cols=154  Identities=12%  Similarity=0.158  Sum_probs=91.1

Q ss_pred             HHHHHHhcC--CCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc-----CCChhHHHHHHHHHHHHhcCC
Q 035507          463 CGRLVELLG--HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-----NHKNSIKKEVSWIISNIACGN  535 (684)
Q Consensus       463 l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~-----~~~~~v~~~a~~~L~nl~~~~  535 (684)
                      .+.+-..+.  ..++..++.|+++++.++.+.......-.-..+++.+..+...     + .+.++..++|+++..+.--
T Consensus       453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~~~v~~~~~~~lgry~~~~  531 (1049)
T 3m1i_C          453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-KAVVASDIMYVVGQYPRFL  531 (1049)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-HHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-hHHHHHHHHHHHHHHHHHH
Confidence            344444454  3567789999999999986544321111111245555554321     2 4556667999999876421


Q ss_pred             hHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHH--------HHHHHCCChHHHHhhccCCChHHHH
Q 035507          536 REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQI--------KYLVTEGCIKPLCDLLQCADPKIVT  607 (684)
Q Consensus       536 ~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~--------~~l~~~g~l~~L~~lL~~~~~~v~~  607 (684)
                      ..+-+ .+. .+++.++..+.+.++.++..|++++.+++........        .++  ..++..+..++..-+.+-..
T Consensus       532 ~~~~~-~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~  607 (1049)
T 3m1i_C          532 KAHWN-FLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVH  607 (1049)
T ss_dssp             HHCHH-HHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHH
T ss_pred             HhHHH-HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHH
Confidence            11111 121 3677788888888999999999999999974332211        111  11334444455555555566


Q ss_pred             HHHHHHHHHHhccc
Q 035507          608 VCLEGLENILKVGE  621 (684)
Q Consensus       608 ~al~~L~~il~~~~  621 (684)
                      .+.+++..++....
T Consensus       608 ~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          608 TFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCC
Confidence            77788877776543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.68  E-value=0.0036  Score=74.00  Aligned_cols=332  Identities=12%  Similarity=0.084  Sum_probs=186.5

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCC
Q 035507          259 WSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFL---MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDA  335 (684)
Q Consensus       259 ~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL---~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~  335 (684)
                      .+.++..+..|+.++..++..-....     ...++.++..+   .+++ +.++..++|+++.++..-..... .. ..+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~~-~l-~~v  530 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHPV-MI-NSV  530 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCHH-HH-TTT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCHH-HH-HHH
Confidence            55678889999999999876644211     12233343333   2334 88999999999998862122222 22 367


Q ss_pred             hHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHH----HHhcc-CCchHHHHHHHHHHHHhccCCC-
Q 035507          336 VPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLL----AQLNE-HTELSMLRIATTTLSNLCRGKP-  409 (684)
Q Consensus       336 i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll----~~L~~-~~~~~v~~~a~~~L~nL~~~~~-  409 (684)
                      ++.++..|.+  +.|+..|++++.+++.+.   +..+.  ..++.++    ..+.. ..+...+..+..+++.++...+ 
T Consensus       531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~---~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~  603 (963)
T 2x19_B          531 LPLVLHALGN--PELSVSSVSTLKKICREC---KYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV  603 (963)
T ss_dssp             HHHHHHHTTC--GGGHHHHHHHHHHHHHHT---GGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHhCC--chHHHHHHHHHHHHHHHH---HHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence            8999988865  789999999999999643   22222  2344444    34432 2356778888889998886543 


Q ss_pred             CCChhhhhchHHHHHHHhc----C-CcHHHHH---HHHHHHHhhcc---CCCh------------------HHHHHHHHh
Q 035507          410 RPLFDQVRPALPALAQLIH----S-NDEQVLT---DACWALFGLSG---DRNN------------------DKIQAVIEA  460 (684)
Q Consensus       410 ~~~~~~~~~~l~~L~~lL~----~-~d~~v~~---~al~~L~~L~~---~~~~------------------~~~~~~~~~  460 (684)
                      .........+++.+...+.    . .+++.+.   ..+.+++.+..   ...+                  ..... ...
T Consensus       604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  682 (963)
T 2x19_B          604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQ  682 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHH
Confidence            2222333455554444432    2 2343333   33333433320   1100                  01111 222


Q ss_pred             chHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh----ccCCChhHHHHHHHHHHHHhc-
Q 035507          461 GVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL----IHNHKNSIKKEVSWIISNIAC-  533 (684)
Q Consensus       461 g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL----~~~~~~~v~~~a~~~L~nl~~-  533 (684)
                      .+++.+..++..  .+..+.+.++.+++.++........     ..+|.++..+    .....+    ..++.++.++. 
T Consensus       683 ~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~  753 (963)
T 2x19_B          683 QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHI  753 (963)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHH
Confidence            355655555532  4567888999999988653322211     2344444333    221122    34445555543 


Q ss_pred             -CC----hHHHHHHHHhCCHHHHHHHhcc---CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC-----ChHHHHhhccC
Q 035507          534 -GN----REQIQAVIDAGLIGPLVNLLQN---AEFDIKEEAAWAISNASSRGTHDQIKYLVTEG-----CIKPLCDLLQC  600 (684)
Q Consensus       534 -~~----~~~~~~l~~~g~l~~Li~ll~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g-----~l~~L~~lL~~  600 (684)
                       +.    ...+..+++. ++..++.++..   ..++++......+..++......    +....     +++.+...+++
T Consensus       754 f~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~----~~~~~~~~~~i~~~~~~~l~~  828 (963)
T 2x19_B          754 FAHEPAHFPPIEALFLL-VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL----FLCERLDVKAVFQCAVLALKF  828 (963)
T ss_dssp             HTTCTTTCHHHHHHHHH-HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG----GGCTTSCHHHHHHHHHHHTTC
T ss_pred             hCCCcchHHHHHHHHHH-HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH----HcCCcccHHHHHHHHHHHcCC
Confidence             22    1223322222 34555555542   36899999998888887532111    11111     34556667788


Q ss_pred             CChHHHHHHHHHHHHHHhcc
Q 035507          601 ADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       601 ~~~~v~~~al~~L~~il~~~  620 (684)
                      .++.+...+++.+..++...
T Consensus       829 ~~~~~~~~~l~~l~~l~~~~  848 (963)
T 2x19_B          829 PEAPTVKASCGFFTELLPRC  848 (963)
T ss_dssp             SCHHHHHHHHHHHHHHGGGT
T ss_pred             CCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998653

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.0013  Score=65.38  Aligned_cols=188  Identities=14%  Similarity=0.126  Sum_probs=127.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc--HHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc-
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP--IEEVI--ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS-  324 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~--~~~ii--~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~-  324 (684)
                      .+| +-+.|.|.++..|.+|+..+.+++...+..  .+...  -....+.+...+.+.+ ..++..|+.++..++.... 
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC-
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence            445 668899999999999999999988765411  11111  1234566677787777 8999999999998876211 


Q ss_pred             ----hhHHHHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHH
Q 035507          325 ----ENTKVVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATT  399 (684)
Q Consensus       325 ----~~~~~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~  399 (684)
                          .......-..+++.|+. .+.++...++..+..++..++...... ..     .+..++..+ .+.++.++..++.
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l~  161 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAAN  161 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHHH
Confidence                11112223356788886 478889999999999988887443221 11     234455555 6778888888887


Q ss_pred             HHHHhccCC--C-CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 035507          400 TLSNLCRGK--P-RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS  446 (684)
Q Consensus       400 ~L~nL~~~~--~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~  446 (684)
                      .|..+....  . .........+++.+..++.+.|+.|+..|..++..+-
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly  211 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY  211 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            777766542  1 1223344567778888999999999999999987766

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.21  E-value=0.012  Score=70.15  Aligned_cols=305  Identities=10%  Similarity=0.057  Sum_probs=163.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcH-----HHHHH--cCCHHHHHH-hh-----------c-CCCCHHHHHHHHHHHHHHhc
Q 035507          262 DNNLQLEATTQFQKLLSIESMPI-----EEVIE--SGVVPRFVE-FL-----------M-REDYPQLQFQAAWALTNIAS  321 (684)
Q Consensus       262 ~~~~~~~a~~~L~~l~s~~~~~~-----~~ii~--~g~i~~Lv~-lL-----------~-~~~~~~v~~~A~~~L~~l~~  321 (684)
                      +++++..|+.+|..+++...++.     ..+..  .+++..+.. ++           . +..+.+.....+..+..++.
T Consensus       247 ~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~  326 (1049)
T 3m1i_C          247 SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLA  326 (1049)
T ss_dssp             SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            68889999999999988743221     11100  122222222 11           1 11123444445555544433


Q ss_pred             C-------CchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCC---CCCCchhHhhcCCHHHHHHH----hcc
Q 035507          322 G-------TSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD---SSGCRDLVLSEGALIPLLAQ----LNE  387 (684)
Q Consensus       322 ~-------~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~---~~~~r~~i~~~g~l~~Ll~~----L~~  387 (684)
                      .       .+.....+  ..+++.++.....++.++...|+..+..++.+   .+..+....  ..+..++..    +..
T Consensus       327 ~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~--~~l~~Lv~~ll~~m~~  402 (1049)
T 3m1i_C          327 RNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE--EICSQLRLVIIENMVR  402 (1049)
T ss_dssp             HHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGH--HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHHHhcCC
Confidence            1       11111111  13466677666677889999999888888762   122222221  233333333    311


Q ss_pred             CC------------------ch---HHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHh
Q 035507          388 HT------------------EL---SMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH--SNDEQVLTDACWALFG  444 (684)
Q Consensus       388 ~~------------------~~---~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~  444 (684)
                      ..                  +.   ..++.+..+|..++...+   ......+.+.+...+.  ..++..++.++++++.
T Consensus       403 ~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~---~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs  479 (1049)
T 3m1i_C          403 PEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV---IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS  479 (1049)
T ss_dssp             CTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred             CcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            10                  11   234455566666663321   1233444455555554  3578899999999999


Q ss_pred             hccCCChHHHHHHHHhchHHHHHHhcCC-----CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh
Q 035507          445 LSGDRNNDKIQAVIEAGVCGRLVELLGH-----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS  519 (684)
Q Consensus       445 L~~~~~~~~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~  519 (684)
                      ++ .........-.-..+++.+..+...     +.+.++..++++++.++..-....+.+.  .+++.++..+.++ ++.
T Consensus       480 ia-~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~-~~~  555 (1049)
T 3m1i_C          480 IS-GTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHET-HEG  555 (1049)
T ss_dssp             TT-TSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSS-CHH
T ss_pred             Hh-cccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCC-CHH
Confidence            98 5433322211122355555554332     2334444688999877643222222221  3677788888877 899


Q ss_pred             HHHHHHHHHHHHhcCChHHHH--------HHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC
Q 035507          520 IKKEVSWIISNIACGNREQIQ--------AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT  578 (684)
Q Consensus       520 v~~~a~~~L~nl~~~~~~~~~--------~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~  578 (684)
                      |+..||+++.+++........        ..+ ..++..+..++...+.+-......+++.++....
T Consensus       556 V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~-~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          556 VQDMACDTFIKIVQKCKYHFVIQQPRESEPFI-QTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH-HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            999999999999874322221        111 1245555566665566666777788888866443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.15  E-value=0.0021  Score=75.38  Aligned_cols=308  Identities=10%  Similarity=0.028  Sum_probs=164.3

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC--chhHHHHHhc
Q 035507          256 AGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGT--SENTKVVIEH  333 (684)
Q Consensus       256 ~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~--~~~~~~i~~~  333 (684)
                      ....+.++.++..++.++...++-  -+...++..+.++.+.++|..   ++++..|+.+|..+.+..  ++.+..++..
T Consensus       200 ~~~~~~~~~l~~~~L~~l~s~i~w--i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~  274 (980)
T 3ibv_A          200 AYSNAKNYGTVGLCLQVYAQWVSW--ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNI  274 (980)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTT--SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHhh--cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence            333457788888899999888763  356777778889999998864   689999999999998743  2333333322


Q ss_pred             CChHHHHHhcC--CCChHHHHHHHHHHHHhh------CCCCC-C----chh--HhhcCCHHHHHHHhccCCchHHHHHHH
Q 035507          334 DAVPIFVKLLA--SPSDDVREQAVWALGNVA------ADSSG-C----RDL--VLSEGALIPLLAQLNEHTELSMLRIAT  398 (684)
Q Consensus       334 g~i~~Li~lL~--~~~~~v~~~a~~~L~nLa------~~~~~-~----r~~--i~~~g~l~~Ll~~L~~~~~~~v~~~a~  398 (684)
                      =.+...+..+.  ..+.++.+..+..+..++      ...+. .    +..  -.-.+.++.++.+. .+++.++...++
T Consensus       275 l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~  353 (980)
T 3ibv_A          275 LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVF  353 (980)
T ss_dssp             HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTH
T ss_pred             HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHH
Confidence            11222222222  356666554444443332      11210 0    000  01124567777777 445556666555


Q ss_pred             HHHHHhccCC---CC--CCh----hhhhchHHHHHHHhcCC-----------c-----HHHHHHHHHHHHhhccCCChHH
Q 035507          399 TTLSNLCRGK---PR--PLF----DQVRPALPALAQLIHSN-----------D-----EQVLTDACWALFGLSGDRNNDK  453 (684)
Q Consensus       399 ~~L~nL~~~~---~~--~~~----~~~~~~l~~L~~lL~~~-----------d-----~~v~~~al~~L~~L~~~~~~~~  453 (684)
                      ..+..+....   +.  ...    .....+++.++.-+..+           +     .+.|.... ++...+..-.++.
T Consensus       354 ~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~  432 (980)
T 3ibv_A          354 PFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSL  432 (980)
T ss_dssp             HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHH
Confidence            5555544221   11  111    22344444444444321           1     12333333 2222220111111


Q ss_pred             -HHHHHHhchHHHHHHhcC---CCCcccHhHHHHHHHHHHcCChhhHHHH-Hhc----CChHHHHHHhc-----cCCChh
Q 035507          454 -IQAVIEAGVCGRLVELLG---HPSPSVLTPALWTVGNIVMGDDFQTQCI-INH----GAVPCLLALLI-----HNHKNS  519 (684)
Q Consensus       454 -~~~~~~~g~l~~L~~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~~-i~~----g~l~~L~~lL~-----~~~~~~  519 (684)
                       ...+.+ -+.+.+.+.+.   +.++..++.|+.+++.++.+.......+ -..    .+++.+..++.     .+ ++.
T Consensus       433 ~l~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~  510 (980)
T 3ibv_A          433 FSSYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPL  510 (980)
T ss_dssp             HHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHH
T ss_pred             HHHHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHH
Confidence             111110 12222333342   2457788999999999987754322111 001    13455555554     45 889


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc------CCHhHHHHHHHHHHHhhcCCC
Q 035507          520 IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN------AEFDIKEEAAWAISNASSRGT  578 (684)
Q Consensus       520 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~------~~~~v~~~a~~aL~nl~~~~~  578 (684)
                      |+..++|+++..+.--..      ....+|.++..+-+      ++..++..|+.++.+++....
T Consensus       511 V~~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          511 VQLLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            999999999998762111      12345555555444      567899999999999987543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.10  E-value=0.00089  Score=70.11  Aligned_cols=243  Identities=18%  Similarity=0.190  Sum_probs=152.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc--HHHHHHcCCHHHHHHhhc---------CCCCHHHHHHHHHHHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP--IEEVIESGVVPRFVEFLM---------REDYPQLQFQAAWALT  317 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~--~~~ii~~g~i~~Lv~lL~---------~~~~~~v~~~A~~~L~  317 (684)
                      +..+.++..|-+..+++|.-|+.+||.++......  +..-....+.-+++-.+.         +..-..||+.|+.+|+
T Consensus       174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            36788899999999999999999999998665310  000001123334443332         1112479999999999


Q ss_pred             HHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHh-hcCCHHHHHHHhccCCchHHHHH
Q 035507          318 NIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVL-SEGALIPLLAQLNEHTELSMLRI  396 (684)
Q Consensus       318 ~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~-~~g~l~~Ll~~L~~~~~~~v~~~  396 (684)
                      .+ ..-+..      ..++..++..+..+..+++..++-.|..+       .+.+. -.++++.++..| .+.|.+++..
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-------~DLL~~Ld~Vv~aVL~GL-~D~DDDVRAV  318 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-------KEFVEDKDGLCRKLVSLL-SSPDEDIKLL  318 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-------GGGCCCHHHHHHHHHHHT-TCSSHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-------HHHHHHHHHHHHHHHhhc-CCcccHHHHH
Confidence            99 644433      34566666666788999999999999988       12221 134566777777 6778899999


Q ss_pred             HHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCc--HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCC
Q 035507          397 ATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSND--EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPS  474 (684)
Q Consensus       397 a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~  474 (684)
                      |+.+|.-++  .+    .....++..+-..|.+.|  ..........|+.++ ..+..   ...+...+|+|..++.|.-
T Consensus       319 AAetLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~-s~p~~---a~~dp~LVPRL~PFLRHtI  388 (800)
T 3oc3_A          319 SAELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIY-RENPE---LSIPPERLKDIFPCFTSPV  388 (800)
T ss_dssp             HHHHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHH-HHCTT---CCCCSGGGGGTGGGGTCSS
T ss_pred             HHHHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHH-cCCcc---cccChHHHHHHHhhhcCCc
Confidence            999999888  11    234556666666665432  111222333333333 11110   0112378999999999999


Q ss_pred             cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH-HhccCCChhHHHHHHHHH
Q 035507          475 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA-LLIHNHKNSIKKEVSWII  528 (684)
Q Consensus       475 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~-lL~~~~~~~v~~~a~~~L  528 (684)
                      ..||.++++++..+.  ...         ++..+.+ +|-.. +++++..+..+-
T Consensus       389 TSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          389 PEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             HHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            999999999997776  221         2233333 34444 677777665444

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.10  E-value=0.037  Score=64.90  Aligned_cols=343  Identities=12%  Similarity=0.053  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHHhcCCchhHHHH-HhcCC----hHHHHHhcC-----CCChHHHHHHHHHHHHhhCCCCCCchhHhhcC
Q 035507          307 QLQFQAAWALTNIASGTSENTKVV-IEHDA----VPIFVKLLA-----SPSDDVREQAVWALGNVAADSSGCRDLVLSEG  376 (684)
Q Consensus       307 ~v~~~A~~~L~~l~~~~~~~~~~i-~~~g~----i~~Li~lL~-----~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g  376 (684)
                      ...+.|+.+|+.++.+-......+ -....    ++.+..++.     .+++.|+..++++++..+..-..      ...
T Consensus       458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~~  531 (980)
T 3ibv_A          458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ESA  531 (980)
T ss_dssp             HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CCT
T ss_pred             HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cch
Confidence            567889999999998644322111 01122    344444544     57899999999999998854322      123


Q ss_pred             CHHHHHHHhcc-----CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC-----CcH--------------
Q 035507          377 ALIPLLAQLNE-----HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS-----NDE--------------  432 (684)
Q Consensus       377 ~l~~Ll~~L~~-----~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-----~d~--------------  432 (684)
                      .+++++..+..     +++..++..|+.++.++|+.-...-......++..+..++..     .+.              
T Consensus       532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~  611 (980)
T 3ibv_A          532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS  611 (980)
T ss_dssp             THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred             hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence            46777777654     456789999999999999875332223334455555555542     111              


Q ss_pred             --HHHHHHHHHHHhhcc--CCChHHHHHHHHhchHHH----HHHhcCCCCc--c---cHhHHHHHHHHHHcCChhh----
Q 035507          433 --QVLTDACWALFGLSG--DRNNDKIQAVIEAGVCGR----LVELLGHPSP--S---VLTPALWTVGNIVMGDDFQ----  495 (684)
Q Consensus       433 --~v~~~al~~L~~L~~--~~~~~~~~~~~~~g~l~~----L~~lL~~~~~--~---v~~~al~~L~nl~~~~~~~----  495 (684)
                        +-+.....+++.+..  ..+.+.....++. +++.    +-..+.....  .   -....+.+++.++.+-+..    
T Consensus       612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~-ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~  690 (980)
T 3ibv_A          612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDS-LINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEE  690 (980)
T ss_dssp             THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CC
T ss_pred             CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCC
Confidence              123444555555441  2233333333332 3333    3333432211  1   1224567778888664321    


Q ss_pred             ---HHHHHhcCChHHHHHHhc--cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHHHH
Q 035507          496 ---TQCIINHGAVPCLLALLI--HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAAWA  569 (684)
Q Consensus       496 ---~~~~i~~g~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~~a  569 (684)
                         ...+.  .+.+.+...+.  .. +..+|..++.++..+...-...+.     ..+|.++..+-.. +..-....+|.
T Consensus       691 ~p~~~~f~--~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~~~~e~~~fL~l  762 (980)
T 3ibv_A          691 VAWLASFN--KASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSIDMNELVDVLSF  762 (980)
T ss_dssp             CSHHHHHH--HHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHCCTTTHHHHHHH
T ss_pred             CcHHHHHH--HHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence               11111  35556666665  33 788999999999999874333322     3567777765432 44445567788


Q ss_pred             HHHhhcCCCHHHHHHHHH--CCChHHHHhhccCCC---------hHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHH
Q 035507          570 ISNASSRGTHDQIKYLVT--EGCIKPLCDLLQCAD---------PKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQ  638 (684)
Q Consensus       570 L~nl~~~~~~~~~~~l~~--~g~l~~L~~lL~~~~---------~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~  638 (684)
                      ++.++.....+....+.+  .-++..+..+|..+.         ..+++.-+..+..++..+-...-.    ...|  ..
T Consensus       763 ~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~----s~~n--~~  836 (980)
T 3ibv_A          763 ISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILF----TEEN--QV  836 (980)
T ss_dssp             HHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGG----SHHH--HT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhc----CCcc--hH
Confidence            887775333222222111  113445555555422         235555556666666643211100    0000  00


Q ss_pred             HHHHhchHHHHHHh-hcCCCHHHHHHHHHHHHHhc
Q 035507          639 LVEEAEGLEKIENL-QSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       639 ~i~~~g~~~~L~~L-~~~~~~~i~~~a~~ii~~~f  672 (684)
                      .++  ..+..+... ..++++...+.|..++.++.
T Consensus       837 ~l~--~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v  869 (980)
T 3ibv_A          837 YFD--PLINSILHFANLVGEPATQKSSIALVSKMV  869 (980)
T ss_dssp             THH--HHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence            010  123333333 34578888999999988874

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.89  E-value=0.2  Score=49.25  Aligned_cols=372  Identities=16%  Similarity=0.152  Sum_probs=212.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHH-HcCCHHHHHHhhcCCC------CHHHHH------HHHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVI-ESGVVPRFVEFLMRED------YPQLQF------QAAWA  315 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii-~~g~i~~Lv~lL~~~~------~~~v~~------~A~~~  315 (684)
                      .+-.+.+++-|.|..++-.-.|.=..  ..++ |+...++ -.|++-.--+++.-++      ++++..      .+. -
T Consensus       189 til~~lRFiISKDt~lKd~~IWn~~~--q~d~~PP~s~li~Lkgv~~~s~~~~~~~dpet~~qNpel~~LiQVvtR~F-D  265 (619)
T 3c2g_A          189 AIFIIFRFIISKDTRLKDYFIWNNNP--HDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLPQNPELAHLIQVIIRTF-D  265 (619)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCC--TTSCCCTTSHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHH-H
T ss_pred             hhhhhhHhhhcccceeccceeeCCcc--ccCCCCChhHHHHHHHHHHhhHHhhcCCChhcccCCHHHHHHHHHHHHHH-H
Confidence            34566777888887666554442211  1111 3333333 3344444445554332      233322      222 3


Q ss_pred             HHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHH
Q 035507          316 LTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLR  395 (684)
Q Consensus       316 L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~  395 (684)
                      |.++..+++...+-++..+++..+.....-++.++.+.....|..++....-+.  .--...++.++..+.-+++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEE
Confidence            456666788899999999999999999999999999999999999864432211  112346788888888888999999


Q ss_pred             HHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcC-------CcHHHHHHHHHHHHhhcc------C-------------
Q 035507          396 IATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHS-------NDEQVLTDACWALFGLSG------D-------------  448 (684)
Q Consensus       396 ~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~al~~L~~L~~------~-------------  448 (684)
                      .....|+|....+ +........++++.+-..+..       .+..-+..+|.+++|-..      -             
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            9999999999887 656666678899988877642       233334444444443220      0             


Q ss_pred             CCh--HHHHHHHHhchHHHHHHhcCCCCc------ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhH
Q 035507          449 RNN--DKIQAVIEAGVCGRLVELLGHPSP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSI  520 (684)
Q Consensus       449 ~~~--~~~~~~~~~g~l~~L~~lL~~~~~------~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v  520 (684)
                      +..  .+...+++.+++.+|+.+|+-+..      ++|...++..--+.....--.     .    .+..+..+.....+
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pk-----d----~~l~VtDd~rk~NL  494 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPK-----D----GVLNVIDENRKENL  494 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCC-----T----TGGGCCCTTTCCCH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCch-----h----hhccccchhhhhhh
Confidence            111  122234555677778777765432      233333443322222111000     0    11111122112233


Q ss_pred             HHHHHHHHHHH----hc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 035507          521 KKEVSWIISNI----AC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC  595 (684)
Q Consensus       521 ~~~a~~~L~nl----~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~  595 (684)
                      .-..|-+++..    .. ...+..+.+++. .+..|+.++.....+.  +.+..+..                  +..=.
T Consensus       495 vGHIciA~sWa~~Q~tNertqdTkqQLiER-~fSLL~~LmEQc~~E~--qVAh~~Ys------------------IsCPL  553 (619)
T 3c2g_A          495 IGHICAAYSWVFRQPNNTRTQSTKQQLVER-TISLLLVLMEQCGAEK--EVAQYSYS------------------IDCPL  553 (619)
T ss_dssp             HHHHHHHHHHHHHSCCCTTTHHHHHHHHHH-HHHHHHHHHHHTTCHH--HHHHTTTT------------------SCCGG
T ss_pred             HHHHHHHHHHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHhhhHH--HHHhheee------------------ccCch
Confidence            33334333333    22 355666777765 6777777776532221  11111111                  11223


Q ss_pred             hhccCC--ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          596 DLLQCA--DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       596 ~lL~~~--~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                      ++|+..  .|.....++..-.+|++..+-....              . .---..++.+.+|.|++|.+.|..++.+|
T Consensus       554 nlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad~--------------W-~i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          554 NLLNGNQVKPTFIHNVLVVCDKILEHCPTRADI--------------W-TIDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             GGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHHH--------------S-CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             hhhcccccChHHHHHHHHHHHHHHHhCcchhcc--------------c-eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            556543  5777888888888888876543210              0 00123577888999999999999999876

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.017  Score=57.12  Aligned_cols=186  Identities=15%  Similarity=0.088  Sum_probs=125.3

Q ss_pred             HHHHhccCCchHHHHHHHHHHHHhccCCCCC-----ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh----
Q 035507          381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRP-----LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN----  451 (684)
Q Consensus       381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~-----~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~----  451 (684)
                      +-..| .+.+-..+..++..+..+....+..     .........+.+...+.+.+..++..++.++..++ ....    
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~-~~~~~~~~   91 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLI-DAFASSSL   91 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHH-TTCC---C
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-HHhhhhhc
Confidence            44555 6777788888888888776654211     11123456677778888999999999999998877 4321    


Q ss_pred             -HHHHHHHHhchHHHHHH-hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          452 -DKIQAVIEAGVCGRLVE-LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       452 -~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                       .......-..+++.|+. .+.+....++..|..++..++........      +++.+...+.+. ++.++.+++..|.
T Consensus        92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K-npkv~~~~l~~l~  164 (278)
T 4ffb_C           92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK-LPKLIAAAANCVY  164 (278)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS-CHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc-CHHHHHHHHHHHH
Confidence             11111222356777775 48888889999999988887754321111      345666777888 9999999998888


Q ss_pred             HHhc--CChH-HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507          530 NIAC--GNRE-QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       530 nl~~--~~~~-~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~  576 (684)
                      .+..  |... .....+. .+++.+..++.+.+..||..|..++..+...
T Consensus       165 ~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            8764  2111 1122222 2566778888999999999999999988764

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.73  E-value=0.054  Score=51.25  Aligned_cols=186  Identities=10%  Similarity=0.088  Sum_probs=128.0

Q ss_pred             cHHHHHHHHHHHHhhccCCChHHHHHHHHh-chHHHHHHhc-------CCCCc-----ccHhHHHHHHHHHHcCChhhHH
Q 035507          431 DEQVLTDACWALFGLSGDRNNDKIQAVIEA-GVCGRLVELL-------GHPSP-----SVLTPALWTVGNIVMGDDFQTQ  497 (684)
Q Consensus       431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~-g~l~~L~~lL-------~~~~~-----~v~~~al~~L~nl~~~~~~~~~  497 (684)
                      +++.++.|+..|+.-- +..++....+..+ |.+..|++=+       ..+.-     .-...|+..+..++. +++.+.
T Consensus        14 ~p~~Re~AL~eLsk~R-e~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~   91 (268)
T 2fv2_A           14 SPETRENALLELSKKR-ESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRS   91 (268)
T ss_dssp             STTTHHHHHHHHHHHT-TTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHH
T ss_pred             CchhHHHHHHHHHHhh-hccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-Ccchhh
Confidence            4556888888877755 5555666666665 6666654332       22211     112345555566665 455777


Q ss_pred             HHHhcCChHHHHHHhccCC----ChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHH
Q 035507          498 CIINHGAVPCLLALLIHNH----KNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISN  572 (684)
Q Consensus       498 ~~i~~g~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~n  572 (684)
                      .++++.+.-.|..+|....    -+.+|-.+..+++.+.. ++++.+.++++.+++|..++.++.++.-.|..|...+..
T Consensus        92 ~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqK  171 (268)
T 2fv2_A           92 AFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQK  171 (268)
T ss_dssp             HHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            8899998888888885542    24688888999999886 688899999999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHH--------CCChHHHHh-hccCCChHHHHHHHHHHHHHHhcc
Q 035507          573 ASSRGTHDQIKYLVT--------EGCIKPLCD-LLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       573 l~~~~~~~~~~~l~~--------~g~l~~L~~-lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      +..  +.....|+..        ..++..++. +.+.+++.+.+.++.+..++.+..
T Consensus       172 IL~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          172 ILL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             Hhc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            986  3343333221        123333333 345678889988888887776653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.72  E-value=0.025  Score=54.79  Aligned_cols=132  Identities=10%  Similarity=0.027  Sum_probs=96.4

Q ss_pred             CCchHHHHHHHHHHHHh----ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH
Q 035507          388 HTELSMLRIATTTLSNL----CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC  463 (684)
Q Consensus       388 ~~~~~v~~~a~~~L~nL----~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l  463 (684)
                      +++..+...++.+|..+    ......-.......++|.|+.-+.+..+.++..+-.++..+. .       ..-...++
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~-~-------v~~~~~v~  169 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS-D-------VVGPLKMT  169 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH-H-------HHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-H-------HCCHHHHH
Confidence            45666666666666554    333233333445778999999999999999998888876666 1       11222477


Q ss_pred             HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCCh---HHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV---PCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      +.+..-+.+.+...|..++..++.+.......     ....+   |.+.+++.++ +..||..|..++..+-.
T Consensus       170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          170 PMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999987433211     23478   9999999998 99999999999887654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.71  E-value=0.017  Score=56.02  Aligned_cols=181  Identities=15%  Similarity=0.074  Sum_probs=119.4

Q ss_pred             HHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh----hhHH
Q 035507          422 ALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD----FQTQ  497 (684)
Q Consensus       422 ~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~----~~~~  497 (684)
                      .+...+.+.|..-...++..|.... ....+.....++. +++-+.-.+-+.+..+...++.+|..+...-.    ....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l-~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~  127 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLA-DTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ  127 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHH-HHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHh-hhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            4555566677777777777776655 3222221111111 23333323446788888888888877642110    0111


Q ss_pred             HHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507          498 CIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       498 ~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~  576 (684)
                      .- ..-++|.|+.-+.++ ...+|..+-.++..+.. .++.        .+++.+.+-+.+.+..+|.+++..+..+...
T Consensus       128 ~e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          128 EE-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             HH-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            10 113689999999888 88899888887776654 2222        2567778888899999999999999988752


Q ss_pred             CCHHHHHHHHHCCCh---HHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507          577 GTHDQIKYLVTEGCI---KPLCDLLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       577 ~~~~~~~~l~~~g~l---~~L~~lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      ....      ....+   +.+..++.+.|..|+..|+.++..+....
T Consensus       198 ~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          198 AGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             HCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            2111      23468   99999999999999999999999887764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.47  E-value=0.11  Score=51.34  Aligned_cols=201  Identities=12%  Similarity=0.095  Sum_probs=140.2

Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch----hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD----LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~----~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      .+...+.+..|+..|..=+.+.|..+..+..++.+.....+-    .+..  -...+..++....++++.-.+...|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            345568889999999888899999999999999876644322    2222  1222222332333455555666666666


Q ss_pred             ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh---chHHHHHHhcCCCCcccHhHH
Q 035507          405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA---GVCGRLVELLGHPSPSVLTPA  481 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~a  481 (684)
                      ++...-.......+.+-.+.+.+..++-++..+|..++..+. .........++..   .++...-.+|.+++--++..+
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelL-t~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS  229 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLL-TRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  229 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHH-HSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHH-hccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence            665432222333455667777888899999999999999887 5544444445544   367778889999999999999


Q ss_pred             HHHHHHHHcCChh--h-HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          482 LWTVGNIVMGDDF--Q-TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       482 l~~L~nl~~~~~~--~-~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                      +..||.+......  . ++.+-+..-+..++.+|.+. +..++-+|..+.--+++
T Consensus       230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            9999999865432  1 22333445688999999999 99999999999888876

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.33  E-value=0.38  Score=47.66  Aligned_cols=199  Identities=12%  Similarity=0.111  Sum_probs=143.2

Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhh---h---hchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ---V---RPALPALAQLIHSNDEQVLTDACWALFGL  445 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~---~---~~~l~~L~~lL~~~d~~v~~~al~~L~~L  445 (684)
                      +...+.+..|+..| ..-+-+.++.++...+++.+.........   .   ..++..|+..-  +++++...+=..|...
T Consensus        74 i~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRec  150 (341)
T 1upk_A           74 LYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHH
Confidence            34556777888888 77788999999999999998873332222   1   22222222222  2344444444445554


Q ss_pred             ccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc---CChHHHHHHhccCCChhHHH
Q 035507          446 SGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH---GAVPCLLALLIHNHKNSIKK  522 (684)
Q Consensus       446 ~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~---g~l~~L~~lL~~~~~~~v~~  522 (684)
                      +  ..+.....++..+.+..+...++.++-++...|..++..+.+.+.......+..   .++..+-++|.++ +.-.|+
T Consensus       151 i--r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR  227 (341)
T 1upk_A          151 I--RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR  227 (341)
T ss_dssp             H--TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred             H--HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence            4  556667778888888899999999999999999999999988777665555543   3577888889998 999999


Q ss_pred             HHHHHHHHHhcC--ChHHHHHHH-HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcC
Q 035507          523 EVSWIISNIACG--NREQIQAVI-DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSR  576 (684)
Q Consensus       523 ~a~~~L~nl~~~--~~~~~~~l~-~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~  576 (684)
                      .+...|+.+...  +.......+ +..-+..++.+|.+.+..++-+|-.++.-++..
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            999999999763  333333222 445688999999999999999999988877653

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.32  E-value=0.72  Score=54.13  Aligned_cols=346  Identities=11%  Similarity=0.100  Sum_probs=178.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC--C--HHHHHHHHHHHHHHhcCCchhHHHHHhcCChH
Q 035507          262 DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED--Y--PQLQFQAAWALTNIASGTSENTKVVIEHDAVP  337 (684)
Q Consensus       262 ~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~--~--~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~  337 (684)
                      ++.....++++++.++..-.+..+.-.=..+++.|+.+..+..  +  +.++...+|+++..+.--..+.. +. ...+.
T Consensus       492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~L-~~vl~  569 (1073)
T 3gjx_A          492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-FL-KTVVN  569 (1073)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HH-HHHHH
T ss_pred             CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-HH-HHHHH
Confidence            4888889999999986433322232222346677777765442  1  22344445677665441111111 11 13467


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhh--cC----CHHHHHHHhc---cCCchHHHHHHHHHHHHhccCC
Q 035507          338 IFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLS--EG----ALIPLLAQLN---EHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       338 ~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~--~g----~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .+++.+..+++.|++.|+.++..+|.+.   ++.+..  .|    .+..++..+.   ..-+++-......+++.+....
T Consensus       570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C---~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~  646 (1073)
T 3gjx_A          570 KLFEFMHETHDGVQDMACDTFIKIAQKC---RRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQ  646 (1073)
T ss_dssp             HHHHHTTCCSTTHHHHHHHHHHHHHHHT---GGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHH---HHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence            7778888889999999999999999764   333322  12    2344444332   2234555666777788888776


Q ss_pred             CCCC--hhhhhchHHHHHH----Hhc--------CCcHH---HHHHHHHHHHhhccCC-C---hHHHHHHHHh--chHHH
Q 035507          409 PRPL--FDQVRPALPALAQ----LIH--------SNDEQ---VLTDACWALFGLSGDR-N---NDKIQAVIEA--GVCGR  465 (684)
Q Consensus       409 ~~~~--~~~~~~~l~~L~~----lL~--------~~d~~---v~~~al~~L~~L~~~~-~---~~~~~~~~~~--g~l~~  465 (684)
                      |...  .......++....    ++.        -.|++   .....+.+...++ .+ .   ......+...  ++...
T Consensus       647 p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~-~~~g~~f~~~~~~i~~~~l~~y~~  725 (1073)
T 3gjx_A          647 TDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRAC-KAVGHPFVIQLGRIYLDMLNVYKC  725 (1073)
T ss_dssp             CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHH-HHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHH-hhcchhHHHHHHHHHHHHHHHHHH
Confidence            5432  2222333333222    221        01332   2233333332222 10 0   0111111000  00000


Q ss_pred             HHHhc-----CCC-----Cc------ccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc----c----CCChhHH
Q 035507          466 LVELL-----GHP-----SP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----H----NHKNSIK  521 (684)
Q Consensus       466 L~~lL-----~~~-----~~------~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~----~----~~~~~v~  521 (684)
                      .-+.+     .++     .+      .++...++.+.......+ ..+ .+...++|.|+..+-    .    ..++.+-
T Consensus       726 ~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~-~~~-~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL  803 (1073)
T 3gjx_A          726 LSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSN-DPQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVL  803 (1073)
T ss_dssp             HHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCS-CHH-HHHHHTSHHHHHHTHHHHHHSCGGGCCTHHH
T ss_pred             HHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC-CHH-HHHHHhHHHHHHHHHHHHhcCCcccccHHHH
Confidence            00111     001     11      133334444444443332 222 222356666665441    1    1155666


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC---CHhHHHHHHHHHHHhhcCC-------CHHHHHHHHHCCCh
Q 035507          522 KEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA---EFDIKEEAAWAISNASSRG-------THDQIKYLVTEGCI  591 (684)
Q Consensus       522 ~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~---~~~v~~~a~~aL~nl~~~~-------~~~~~~~l~~~g~l  591 (684)
                      .-.+-.+..+...-.+.+..++++ ++..=++++..+   .|+.|..--..+.++...+       .+++.+.     ++
T Consensus       804 ~l~s~iv~k~~~~~~~~~~~il~~-vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~-----~i  877 (1073)
T 3gjx_A          804 STMAIIVNKLGGHITAEIPQIFDA-VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKL-----VL  877 (1073)
T ss_dssp             HHHHHHHHHHGGGTGGGHHHHHHH-HHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHH-----HH
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHH-----HH
Confidence            666666666665545555555554 566666777643   6788777666666555422       3444444     46


Q ss_pred             HHHHhhccCCChHHHHHHHHHHHHHHhccc
Q 035507          592 KPLCDLLQCADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       592 ~~L~~lL~~~~~~v~~~al~~L~~il~~~~  621 (684)
                      +.++-.+++..+++-..++.++..++....
T Consensus       878 ~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~  907 (1073)
T 3gjx_A          878 DSIIWAFKHTMRNVADTGLQILFTLLQNVA  907 (1073)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHHHhh
Confidence            677888899999999999999999887644

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.22  E-value=0.028  Score=59.10  Aligned_cols=246  Identities=15%  Similarity=0.071  Sum_probs=156.4

Q ss_pred             ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC--CchhHhhcCCHHHHHHHhc---------cCCchHHHHHHHHHHHH
Q 035507          335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSG--CRDLVLSEGALIPLLAQLN---------EHTELSMLRIATTTLSN  403 (684)
Q Consensus       335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~--~r~~i~~~g~l~~Ll~~L~---------~~~~~~v~~~a~~~L~n  403 (684)
                      ....|+.-|-++..++|-.|+.+|..+......  .|.........-.++-.+.         +..-..+++.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            456677777789999999999999998743321  0110011112222222221         11234799999999999


Q ss_pred             hccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507          404 LCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW  483 (684)
Q Consensus       404 L~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  483 (684)
                      + ..-+..     ..++..++..+..+..+++..++-.|.|+. +--..      -.++++.++..|.+.+++|+..|+.
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~-DLL~~------Ld~Vv~aVL~GL~D~DDDVRAVAAe  321 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK-EFVED------KDGLCRKLVSLLSSPDEDIKLLSAE  321 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-GGCCC------HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH-HHHHH------HHHHHHHHHhhcCCcccHHHHHHHH
Confidence            9 554443     344444555557888999999999999985 32221      2367889999999999999999999


Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChh-HHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhH
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNS-IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDI  562 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~-v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v  562 (684)
                      +|..++  .+.....     ++..+-..|.+-++-. -.......|+.++...+.   ...+...+|.|...+.+.-..|
T Consensus       322 tLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          322 LLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHH
T ss_pred             Hhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHH
Confidence            999988  2222322     3344444444321211 122334455555543211   0112368999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHH
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE  614 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~  614 (684)
                      |..++.++..+.   .....+.        .+.++|-..+++++..+.++..
T Consensus       392 R~AVL~TL~tfL---~~~~LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          392 RTSILNMVKNLS---EESIDFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHTTTCC---CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            999999998887   2232222        2334566788888888888775

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.22  E-value=0.69  Score=54.30  Aligned_cols=357  Identities=11%  Similarity=0.096  Sum_probs=182.8

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC--------c-----HHHHHHc--CCHHHHHHhhcCCCCHHHHHHHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESM--------P-----IEEVIES--GVVPRFVEFLMREDYPQLQFQAAW  314 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~--------~-----~~~ii~~--g~i~~Lv~lL~~~~~~~v~~~A~~  314 (684)
                      .++.+++.++++ +.....++..|+.+...-..        .     .+.+...  .+++.+...|....++++...++.
T Consensus       151 fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~  229 (1073)
T 3gjx_A          151 FISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLE  229 (1073)
T ss_dssp             HHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence            466777766543 34445556666554432000        0     1112221  133334444544444788888889


Q ss_pred             HHHHHhcCCchhHHHHHhcCChHHHH-HhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHH----Hh---
Q 035507          315 ALTNIASGTSENTKVVIEHDAVPIFV-KLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLA----QL---  385 (684)
Q Consensus       315 ~L~~l~~~~~~~~~~i~~~g~i~~Li-~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~----~L---  385 (684)
                      +|....+=-  ....+++.+.++.++ .+|  +++.++..|+.+|..+.+.. +.+.+.+..  ....++.    .+   
T Consensus       230 ~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~--lf~~~~~~i~~ilp~~  303 (1073)
T 3gjx_A          230 TLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFET--LFTLTMMQLKQMLPLN  303 (1073)
T ss_dssp             HHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHH--HHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHH--HHHHHHHHHHHhcCCc
Confidence            999888722  345677888888884 666  45789999999999998653 221122110  1111111    11   


Q ss_pred             ---------ccCCchHHHHHHHHHHHHhccCC------CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhcc---
Q 035507          386 ---------NEHTELSMLRIATTTLSNLCRGK------PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSG---  447 (684)
Q Consensus       386 ---------~~~~~~~v~~~a~~~L~nL~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~---  447 (684)
                               ....|.+.....+..+..+...-      .+........++..++.+...+|.++..-++..=..+..   
T Consensus       304 ~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~  383 (1073)
T 3gjx_A          304 TNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELY  383 (1073)
T ss_dssp             SCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence                     12234455565666655444332      001112223344455555667777776654433222210   


Q ss_pred             CCC------------------hHHHHHHH--HhchHHHHHHhcCCCCc----------ccHh-----------HHHH-HH
Q 035507          448 DRN------------------NDKIQAVI--EAGVCGRLVELLGHPSP----------SVLT-----------PALW-TV  485 (684)
Q Consensus       448 ~~~------------------~~~~~~~~--~~g~l~~L~~lL~~~~~----------~v~~-----------~al~-~L  485 (684)
                      ...                  ........  -..+...++.-+..+.+          .+|.           .+++ ++
T Consensus       384 ~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L  463 (1073)
T 3gjx_A          384 RESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL  463 (1073)
T ss_dssp             HHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHH
Confidence            000                  01111000  01223333444443321          0111           1122 33


Q ss_pred             HHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChH-HHHHHHHhCCHHHHHHHhccC---C-
Q 035507          486 GNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNRE-QIQAVIDAGLIGPLVNLLQNA---E-  559 (684)
Q Consensus       486 ~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~g~l~~Li~ll~~~---~-  559 (684)
                      ..++.-....+..+    .++.+.+.+..+ .+......++|+++.|+..-.+ .-..++ ..+++.|+.+....   + 
T Consensus       464 ~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~  538 (1073)
T 3gjx_A          464 VYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDN  538 (1073)
T ss_dssp             HHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHH
T ss_pred             HHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccch
Confidence            33433222222211    234444444432 2678899999999999854222 111222 23677777776544   2 


Q ss_pred             -HhHHHHHHHHHHHhhcC--CCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 035507          560 -FDIKEEAAWAISNASSR--GTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAE  623 (684)
Q Consensus       560 -~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~  623 (684)
                       ..++...+|+++.....  .+++..+.     ++..|.+.+.+.++.++..|..++..++..+...
T Consensus       539 k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          539 KAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             hHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence             23455566888876553  13333332     5677788888889999999999999999877653

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.82  E-value=0.0049  Score=59.39  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=84.9

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhh
Q 035507          337 PIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV  416 (684)
Q Consensus       337 ~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~  416 (684)
                      +.|..++.++++.||..++..+   .   +            . ++..+.++++..++..+...   +.           
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~l---~---~------------~-~L~~L~~D~d~~VR~~aA~~---l~-----------  147 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADRL---P---L------------E-QLEQMAADRDYLVRAYVVQR---IP-----------  147 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHS---C---T------------G-GGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred             HHHHHHHcCCCHHHHHHHHHhC---C---H------------H-HHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence            3456667777777777766632   0   0            0 11223366677777766652   10           


Q ss_pred             hchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhH
Q 035507          417 RPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT  496 (684)
Q Consensus       417 ~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  496 (684)
                         .+.+..++.++++.|+..+...   +.                .+.+..++.++++.||..++..+           
T Consensus       148 ---~~~l~~l~~D~d~~VR~~aa~~---l~----------------~~ll~~ll~D~d~~VR~aaa~~l-----------  194 (244)
T 1lrv_A          148 ---PGRLFRFMRDEDRQVRKLVAKR---LP----------------EESLGLMTQDPEPEVRRIVASRL-----------  194 (244)
T ss_dssp             ---GGGGGGTTTCSCHHHHHHHHHH---SC----------------GGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred             ---HHHHHHHHcCCCHHHHHHHHHc---CC----------------HHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence               1123355667777777777664   22                13344667777888887777542           


Q ss_pred             HHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHH
Q 035507          497 QCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAI  570 (684)
Q Consensus       497 ~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL  570 (684)
                             ..+.|..++.++ ++.||..++..++                  .+.|..+ .+.++.|+..|...|
T Consensus       195 -------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 -------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             -------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             -------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                   124566777777 8888888877643                  2444444 777888888877554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.55  E-value=0.0051  Score=59.26  Aligned_cols=164  Identities=14%  Similarity=0.145  Sum_probs=110.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507          253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE  332 (684)
Q Consensus       253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~  332 (684)
                      .+..++.++++.++..++..+                  ..+.|..++++++ +.+|..++..+   .            
T Consensus        78 ~l~~L~~D~~~~VR~~aA~~L------------------~~~~L~~ll~D~d-~~VR~~aA~~l---~------------  123 (244)
T 1lrv_A           78 ALTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDED-REVRITVADRL---P------------  123 (244)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSC-HHHHHHHHHHS---C------------
T ss_pred             HHHHHccCcCHHHHHHHHHHC------------------CHHHHHHHHcCCC-HHHHHHHHHhC---C------------
Confidence            344555666777777766532                  0134667777777 78888877742   1            


Q ss_pred             cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCC
Q 035507          333 HDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL  412 (684)
Q Consensus       333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~  412 (684)
                         .+.|..++++++..||..++..   +.                ..++..+.++++..++..++..+   .       
T Consensus       124 ---~~~L~~L~~D~d~~VR~~aA~~---l~----------------~~~l~~l~~D~d~~VR~~aa~~l---~-------  171 (244)
T 1lrv_A          124 ---LEQLEQMAADRDYLVRAYVVQR---IP----------------PGRLFRFMRDEDRQVRKLVAKRL---P-------  171 (244)
T ss_dssp             ---TGGGGGGTTCSSHHHHHHHHHH---SC----------------GGGGGGTTTCSCHHHHHHHHHHS---C-------
T ss_pred             ---HHHHHHHHcCCCHHHHHHHHHh---cC----------------HHHHHHHHcCCCHHHHHHHHHcC---C-------
Confidence               2345667888999999988863   21                11233444788999999887741   1       


Q ss_pred             hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507          413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGD  492 (684)
Q Consensus       413 ~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  492 (684)
                             .+.+..++.++++.|+..+...   +.                .+.|..++.++++.||..+...++      
T Consensus       172 -------~~ll~~ll~D~d~~VR~aaa~~---l~----------------~~~L~~Ll~D~d~~VR~~aa~~l~------  219 (244)
T 1lrv_A          172 -------EESLGLMTQDPEPEVRRIVASR---LR----------------GDDLLELLHDPDWTVRLAAVEHAS------  219 (244)
T ss_dssp             -------GGGGGGSTTCSSHHHHHHHHHH---CC----------------GGGGGGGGGCSSHHHHHHHHHHSC------
T ss_pred             -------HHHHHHHHcCCCHHHHHHHHHh---CC----------------HHHHHHHHcCCCHHHHHHHHHcCC------
Confidence                   1344467788999999988765   23                246788899999999999888754      


Q ss_pred             hhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHH
Q 035507          493 DFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWII  528 (684)
Q Consensus       493 ~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L  528 (684)
                                  .+.|..+ .++ ++.||..|...|
T Consensus       220 ------------~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          220 ------------LEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             ------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             ------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence                        2445455 666 899998887554

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.46  E-value=0.16  Score=49.98  Aligned_cols=164  Identities=15%  Similarity=0.180  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc
Q 035507          434 VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI  513 (684)
Q Consensus       434 v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~  513 (684)
                      +...+...|.-+.  .+...++-+++.+++..+...++.++.++....+..+-..+.... ....- -...+|.++..+.
T Consensus       259 VvtR~FDLL~LLm--HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~-L~e~LPFi~~~i~  334 (619)
T 3c2g_A          259 VIIRTFDLLGLLL--HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTP-LENILPFLLRLIE  334 (619)
T ss_dssp             HHHHHHHHHHHHC--CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSC-CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhcc-ccccchHHHHHhc
Confidence            4445555555555  677888889999999999999999999999999999988765432 11100 1246788888885


Q ss_pred             cCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-------CHhHHHHHHHHHHHhhcC----------
Q 035507          514 HNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-------EFDIKEEAAWAISNASSR----------  576 (684)
Q Consensus       514 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-------~~~v~~~a~~aL~nl~~~----------  576 (684)
                      -.++.++.......|+|..++........+..|.++.|...+...       +..-++.||..++|....          
T Consensus       335 ~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIP  414 (619)
T 3c2g_A          335 IHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIP  414 (619)
T ss_dssp             HCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             cCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEe
Confidence            444889999999999999999888888888999999999987532       445566777777775531          


Q ss_pred             ---------C--CHHHHHHHHHCCChHHHHhhccCC
Q 035507          577 ---------G--THDQIKYLVTEGCIKPLCDLLQCA  601 (684)
Q Consensus       577 ---------~--~~~~~~~l~~~g~l~~L~~lL~~~  601 (684)
                               |  +.++..++++.++++.|..+|+-+
T Consensus       415 m~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e  450 (619)
T 3c2g_A          415 TPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE  450 (619)
T ss_dssp             CTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred             cCCCccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                     1  234556677777888898888743

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.01  E-value=1.3  Score=41.98  Aligned_cols=192  Identities=14%  Similarity=0.098  Sum_probs=122.9

Q ss_pred             CcccHhHHHHHHHHHHcCChhhHHHHHh-cCChHHHHHHh-------ccCC-ChhHHHHHHHHHH--HHhcCChHHHHHH
Q 035507          474 SPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALL-------IHNH-KNSIKKEVSWIIS--NIACGNREQIQAV  542 (684)
Q Consensus       474 ~~~v~~~al~~L~nl~~~~~~~~~~~i~-~g~l~~L~~lL-------~~~~-~~~v~~~a~~~L~--nl~~~~~~~~~~l  542 (684)
                      +++.|+.|+.-|+.=-...++..-.+.. .|.+..|++=+       ..+. ....-...|.+|+  ...+..++.+..+
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            4456888887777654444443333443 35444443322       1110 1222333444443  3334567888999


Q ss_pred             HHhCCHHHHHHHhccCC-----HhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507          543 IDAGLIGPLVNLLQNAE-----FDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL  617 (684)
Q Consensus       543 ~~~g~l~~Li~ll~~~~-----~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il  617 (684)
                      +++++.-.|..++...+     ..+|-.+..+++.++...+++...++.+.++++.....++.++.--...|..++.+|+
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            99998777888776542     4688899999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCCcchhHHHHHHHHhchHH-HHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          618 KVGEAEKNTDSDIGDINQFAQLVEEAEGLE-KIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                      ..+......+   ...+.|.....   .+. -+..+...+++.+.+.......+.
T Consensus       174 ~dd~GL~YiC---~t~eRF~av~~---vL~~mV~~l~~~ps~RLLKhiircYlRL  222 (268)
T 2fv2_A          174 LDDTGLAYIC---QTYERFSHVAM---ILGKMVLQLSKEPSARLLKHVVRCYLRL  222 (268)
T ss_dssp             HSHHHHHHHT---SSHHHHHHHHH---HHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHH---ccHHHHHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            7654433211   11122222111   222 245566778888776555544444

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.93  E-value=0.62  Score=44.35  Aligned_cols=153  Identities=13%  Similarity=0.136  Sum_probs=97.1

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHhc
Q 035507          254 MVAGVWSDD-NNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR----E------DYPQLQFQAAWALTNIAS  321 (684)
Q Consensus       254 lv~~L~s~~-~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~----~------~~~~v~~~A~~~L~~l~~  321 (684)
                      +++.|+++. ...-..-+..|+..+...+ .-.+.+ ..+++..|+.+|..    .      .+...+..++.||..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            444554432 2222334555655555554 445555 46677777777743    1      125788899999999997


Q ss_pred             CCchhHHHHHh-cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CC-chhHhh----------cCCHHHHHHHhccC
Q 035507          322 GTSENTKVVIE-HDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GC-RDLVLS----------EGALIPLLAQLNEH  388 (684)
Q Consensus       322 ~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~-r~~i~~----------~g~l~~Ll~~L~~~  388 (684)
                       +......++. .+++..+...|.++++.++..++..|+.+|..+. .. ...+++          ..-+.+++..+...
T Consensus        84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A           84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence             5556666664 4678999999999999999999999999986654 22 233321          12345566666545


Q ss_pred             CchHHHHHHHHHHHHhccCC
Q 035507          389 TELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       389 ~~~~v~~~a~~~L~nL~~~~  408 (684)
                      .+.+.+..+...+..+....
T Consensus       163 ~~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPA  182 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHHHCCC
Confidence            55666666666666666654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.92  E-value=0.34  Score=45.53  Aligned_cols=144  Identities=17%  Similarity=0.085  Sum_probs=104.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhC-CCCCCch
Q 035507          293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAA-DSSGCRD  370 (684)
Q Consensus       293 i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~-~~~~~r~  370 (684)
                      ++....+.+++. .++|..|+..|+.. ...         ...++.+.. +-..++..|++.+..+++.++. ..++.  
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--  139 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--  139 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence            455566667777 69999999988877 311         124566666 5566889999999999999985 44431  


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCC
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRN  450 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~  450 (684)
                            .++.+..-. .+++..+++.|+..+.-.+.. + ........++|.+-.+..+++.-|+..+.|.|..++ ..+
T Consensus       140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S-K~~  209 (240)
T 3l9t_A          140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS-KKF  209 (240)
T ss_dssp             ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH-TTC
T ss_pred             ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh-hhC
Confidence                  344455444 888999999998877654443 2 222334567888888888999999999999999999 777


Q ss_pred             hHHHHHHHH
Q 035507          451 NDKIQAVIE  459 (684)
Q Consensus       451 ~~~~~~~~~  459 (684)
                      ++....+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776665554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.41  E-value=0.26  Score=46.24  Aligned_cols=143  Identities=10%  Similarity=-0.016  Sum_probs=102.0

Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHH-HhcCCcHHHHHHHHHHHHhhccC-CChHHHH
Q 035507          378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQ-LIHSNDEQVLTDACWALFGLSGD-RNNDKIQ  455 (684)
Q Consensus       378 l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~al~~L~~L~~~-~~~~~~~  455 (684)
                      +.++...|-++...+++..|+.+|..+ .        .....++.+.. +..+++..|++.+..++..++ . ..++   
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~-~~~~pe---  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFC-KKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHH-HHHCTT---
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH-HhcCHH---
Confidence            345566665677678999999988877 2        12457787777 556778999999999999888 2 1111   


Q ss_pred             HHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCCh--hhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc
Q 035507          456 AVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDD--FQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC  533 (684)
Q Consensus       456 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  533 (684)
                           ..++.+.....+++..+|..|...+..-+....  ....     -++|.+-.+..++ +.-||+..+|.|..++.
T Consensus       139 -----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK  207 (240)
T 3l9t_A          139 -----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDV-SEYVRKSVGNALRDISK  207 (240)
T ss_dssp             -----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCCh-HHHHHHHHHHHHHHHhh
Confidence                 256788899999999999998877643222211  1111     1456666666777 89999999999999999


Q ss_pred             CChHHHHHHHH
Q 035507          534 GNREQIQAVID  544 (684)
Q Consensus       534 ~~~~~~~~l~~  544 (684)
                      .+|+-+..+++
T Consensus       208 ~~Pd~V~~~~~  218 (240)
T 3l9t_A          208 KFPDLVKIELK  218 (240)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCHHHHHHHHH
Confidence            98887766654

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.40  E-value=11  Score=45.22  Aligned_cols=298  Identities=9%  Similarity=0.032  Sum_probs=168.4

Q ss_pred             cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHhcC----
Q 035507          250 ILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLM-REDYPQLQFQAAWALTNIASG----  322 (684)
Q Consensus       250 ~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~-~~~~~~v~~~A~~~L~~l~~~----  322 (684)
                      .+..++..+.+.  +.+.+.+|-..|..+-...          +....+...|. .+.++.+|..|+..|.+....    
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            344555555554  6777888888887753321          23344444443 333489999999999988642    


Q ss_pred             -CchhHHHHHhcCChHHHHHhcCC---CChHHHHHHHHHHHHhhCCC-C-CCchhHhhcCCHHHHHHHhccCCchHHHHH
Q 035507          323 -TSENTKVVIEHDAVPIFVKLLAS---PSDDVREQAVWALGNVAADS-S-GCRDLVLSEGALIPLLAQLNEHTELSMLRI  396 (684)
Q Consensus       323 -~~~~~~~i~~~g~i~~Li~lL~~---~~~~v~~~a~~~L~nLa~~~-~-~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~  396 (684)
                       +++.+..+ ...++..+...-..   ....++.+++.++..|+... | ..      .+.++.++..+..  +......
T Consensus        82 l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~--~~~~~e~  152 (1204)
T 3a6p_A           82 MSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ--GETQTEL  152 (1204)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT--CHHHHHH
T ss_pred             CCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC--CHHHHHH
Confidence             23333333 33344444443211   45789999999999998543 2 12      1346777777733  4455677


Q ss_pred             HHHHHHHhccCC---CCCChhh-----------hhchHHHHHHHhcC-------------------CcHHHHHHHHHHHH
Q 035507          397 ATTTLSNLCRGK---PRPLFDQ-----------VRPALPALAQLIHS-------------------NDEQVLTDACWALF  443 (684)
Q Consensus       397 a~~~L~nL~~~~---~~~~~~~-----------~~~~l~~L~~lL~~-------------------~d~~v~~~al~~L~  443 (684)
                      ++.+|..++...   .......           ...+++.+..++..                   .+..+...++.++.
T Consensus       153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~  232 (1204)
T 3a6p_A          153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA  232 (1204)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence            778888776542   1111110           12344444444432                   23456677777877


Q ss_pred             hhccCCChHHHHHHHHh--chHHHHHHhcCCCCcccHhHHHHHHHHHHcCC--hhhHHHHHhc---CChHHHHHHhc---
Q 035507          444 GLSGDRNNDKIQAVIEA--GVCGRLVELLGHPSPSVLTPALWTVGNIVMGD--DFQTQCIINH---GAVPCLLALLI---  513 (684)
Q Consensus       444 ~L~~~~~~~~~~~~~~~--g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~--~~~~~~~i~~---g~l~~L~~lL~---  513 (684)
                      +.. .--+  ...+.+.  .+++.+..++.  ++.++..|+.+|..++...  +.....++..   ..+..++..+.   
T Consensus       233 ~~l-~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~  307 (1204)
T 3a6p_A          233 GYI-DWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAD  307 (1204)
T ss_dssp             TTT-TTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCC
T ss_pred             HHH-hccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCC
Confidence            655 2211  2223333  27777777765  4678999999999999754  2221112210   11223444432   


Q ss_pred             ----cCCChhHHHHHHHHHHHHhcCChHHHHHHHH-----------hCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          514 ----HNHKNSIKKEVSWIISNIACGNREQIQAVID-----------AGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       514 ----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                          +..+.++.+..+..+..++.    ....++.           .++++.++.+..+++..+...++.....+..
T Consensus       308 ~~~~~e~d~e~~k~l~~ll~~lg~----~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~  380 (1204)
T 3a6p_A          308 GGGLVEKHYVFLKRLCQVLCALGN----QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR  380 (1204)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHH----HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHH----HHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence                11145677777777777752    1111211           1468888888888888888887766665554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.19  E-value=0.4  Score=45.68  Aligned_cols=161  Identities=14%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             HHHHHhcCChHHHHHHhcc----C------CChhHHHHHHHHHHHHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHH
Q 035507          496 TQCIINHGAVPCLLALLIH----N------HKNSIKKEVSWIISNIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKE  564 (684)
Q Consensus       496 ~~~~i~~g~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~  564 (684)
                      .+.+ ..+++..|+.+|..    +      .+...+.++..+|..+... ......++. .+.+..+...+.+.++.++.
T Consensus        37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~  114 (233)
T 2f31_A           37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMI  114 (233)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred             HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence            3344 34566666666632    1      1345677788888887653 455565654 45788888888888999999


Q ss_pred             HHHHHHHHhhcCCC----HH-HHHH------HHHCCChHHHHhhcc-CCChHHHHHHHHHHHHHHhcccccccCCCCCcc
Q 035507          565 EAAWAISNASSRGT----HD-QIKY------LVTEGCIKPLCDLLQ-CADPKIVTVCLEGLENILKVGEAEKNTDSDIGD  632 (684)
Q Consensus       565 ~a~~aL~nl~~~~~----~~-~~~~------l~~~g~l~~L~~lL~-~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~  632 (684)
                      .|+..|..++....    .+ ....      .-+..-...+++.++ ..+.+....++..+..++...+...       .
T Consensus       115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~-------~  187 (233)
T 2f31_A          115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------F  187 (233)
T ss_dssp             HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------H
T ss_pred             HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH-------H
Confidence            99988877765432    11 1111      123345777888777 4667888888888888887755432       2


Q ss_pred             hhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 035507          633 INQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV  665 (684)
Q Consensus       633 ~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~  665 (684)
                      -......+..+|..+.++.+....++++...-.
T Consensus       188 R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          188 RVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence            234677888999999999999989988765543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.97  E-value=1.5  Score=45.15  Aligned_cols=156  Identities=13%  Similarity=0.130  Sum_probs=106.3

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHH
Q 035507          252 PMMVAGVWSDD-NNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR----------EDYPQLQFQAAWALTNI  319 (684)
Q Consensus       252 ~~lv~~L~s~~-~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~----------~~~~~v~~~A~~~L~~l  319 (684)
                      ..++..|.++- .......+..|+..+...+ .-++.++ .+++..|+..|..          ..+...+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            45666666543 2333456777777776665 4556666 6677888888742          11257889999999999


Q ss_pred             hcCCchhHHHHHh-cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CC-chhHh----------hcCCHHHHHHHhc
Q 035507          320 ASGTSENTKVVIE-HDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GC-RDLVL----------SEGALIPLLAQLN  386 (684)
Q Consensus       320 ~~~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~-r~~i~----------~~g~l~~Ll~~L~  386 (684)
                      .. +......++. ...+..+...|.++++.++..|+..|+.+|..+. .. ...++          +..-+.+++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            87 5556666664 4679999999999999999999999999997653 21 22222          2234667777775


Q ss_pred             cCCchHHHHHHHHHHHHhccCCC
Q 035507          387 EHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       387 ~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      ...+.+...++...+..+....+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCC
Confidence            55666777777777777776643

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.88  E-value=2.6  Score=43.84  Aligned_cols=210  Identities=14%  Similarity=0.111  Sum_probs=128.5

Q ss_pred             CCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHH
Q 035507          388 HTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLV  467 (684)
Q Consensus       388 ~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~  467 (684)
                      ..+...++-|+..+..+...-|    .....++..++.++.++|..|+..|+..|..+| ..  +...     .+...|+
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~c-k~--~~i~-----kiaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFA-TG--ENLP-----RVADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGC-CT--TCHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHh-hh--hhhh-----hHHHHHH
Confidence            3457888889999988877754    234678889999999999999999999999999 44  3333     4567899


Q ss_pred             HhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhC
Q 035507          468 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAG  546 (684)
Q Consensus       468 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g  546 (684)
                      ++|+.+++.-....-.+|..+...++..        .+..+...+..+ ++.+|..+...|..-... .++....-++.-
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~  177 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTKLKTLPDEVLTKEVEEL  177 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHHGGGSCTTTSCHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHHHhhcchhhccHHHHHH
Confidence            9999888766666666777776655532        334444444456 778888887777644321 111111122222


Q ss_pred             CHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh---hccCCChHHHHHHHHHHHHHHhcc
Q 035507          547 LIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCD---LLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       547 ~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~---lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      ++..+.++|++...+=-......|..+-...+....+.|++  ++....+   -++..|++.+...+.++..-+-.-
T Consensus       178 i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            44455556655443333334445544444445544444332  1111111   133467777777777777665543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.81  E-value=1.2  Score=46.27  Aligned_cols=248  Identities=14%  Similarity=0.082  Sum_probs=139.4

Q ss_pred             CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHH
Q 035507          346 PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQ  425 (684)
Q Consensus       346 ~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~  425 (684)
                      ++...+.-|+..+.....+-|..++.     ++..++.++ .+.|..++..|+..|..+|.+      ..+..+..+|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            56788888888888888888775544     577888888 778889999999999999987      336788899999


Q ss_pred             HhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcC-ChhhHHHHHhcCC
Q 035507          426 LIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMG-DDFQTQCIINHGA  504 (684)
Q Consensus       426 lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~-~~~~~~~~i~~g~  504 (684)
                      +|+.+++.-...+-.+|..+. ..++.        +.+..+..-+..+++.+|+.++..|..-... ..+....-++.-+
T Consensus       108 lLqtdd~~E~~~V~~sL~sll-k~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIF-KMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHH-HHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHH-hcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            999999888877777777776 32221        3344444444445778888888877554321 1111111112224


Q ss_pred             hHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHh------ccCCHhHHHHHHHHHHHhh---
Q 035507          505 VPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLL------QNAEFDIKEEAAWAISNAS---  574 (684)
Q Consensus       505 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll------~~~~~~v~~~a~~aL~nl~---  574 (684)
                      +..+.++|.+- ...-=.-....|..+-. .++...+.+     ++.+.+..      ...|.+.....+.++....   
T Consensus       179 ~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          179 LTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            45666666443 22111122223333222 333333333     23333332      1135555444444444333   


Q ss_pred             -cC-CCHHHHHHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhccc
Q 035507          575 -SR-GTHDQIKYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       575 -~~-~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~  621 (684)
                       .+ .+.....++.+. +++.+-.+-.. ..++.+...+.++..+.....
T Consensus       253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence             22 244566665554 56544443322 112244455555555554443

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.70  E-value=2.8  Score=50.34  Aligned_cols=284  Identities=10%  Similarity=0.045  Sum_probs=155.9

Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc--CCCChHHHHHHHHHHHHhhCCC-----CCCchhHhhcCC
Q 035507          305 YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL--ASPSDDVREQAVWALGNVAADS-----SGCRDLVLSEGA  377 (684)
Q Consensus       305 ~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL--~~~~~~v~~~a~~~L~nLa~~~-----~~~r~~i~~~g~  377 (684)
                      ++..|.+|-..|..+-. ++         ++...+...|  .+.+..+|..|+..|-|.....     ++.+..+     
T Consensus        26 ~~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-----   90 (1204)
T 3a6p_A           26 TQRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-----   90 (1204)
T ss_dssp             CHHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-----
T ss_pred             ChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-----
Confidence            36788888888887755 22         2344444433  3467889999999999887432     1111111     


Q ss_pred             HHHHHHHhccC------CchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC-
Q 035507          378 LIPLLAQLNEH------TELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR-  449 (684)
Q Consensus       378 l~~Ll~~L~~~------~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~-  449 (684)
                      =..++..+.+.      ....++..++.++..++... |    .....+++.++.++.+ ++.....++.+|..++ .. 
T Consensus        91 r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~-Eev  164 (1204)
T 3a6p_A           91 KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLA-EDV  164 (1204)
T ss_dssp             HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-HHH
Confidence            22344444322      35677888888888888765 3    2346788888888876 4556777888887776 21 


Q ss_pred             ------ChHHHHH---HHHh---chHHHHHHhcCC-------------------CCcccHhHHHHHHHHHHcCChhhHHH
Q 035507          450 ------NNDKIQA---VIEA---GVCGRLVELLGH-------------------PSPSVLTPALWTVGNIVMGDDFQTQC  498 (684)
Q Consensus       450 ------~~~~~~~---~~~~---g~l~~L~~lL~~-------------------~~~~v~~~al~~L~nl~~~~~~~~~~  498 (684)
                            .......   .+..   .+++.+..++..                   .+..++..++.++.+...--+  ...
T Consensus       165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~  242 (1204)
T 3a6p_A          165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSH  242 (1204)
T ss_dssp             HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHH
Confidence                  1111111   1111   233333444422                   122355666777765544322  122


Q ss_pred             HHhcC--ChHHHHHHhccCCChhHHHHHHHHHHHHhcCC--hHHHHHHHHh---CCHHHHHHHhc--------cCCHhHH
Q 035507          499 IINHG--AVPCLLALLIHNHKNSIKKEVSWIISNIACGN--REQIQAVIDA---GLIGPLVNLLQ--------NAEFDIK  563 (684)
Q Consensus       499 ~i~~g--~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---g~l~~Li~ll~--------~~~~~v~  563 (684)
                      +.+..  +++.+..++.   ++.++..|+.+|..++...  ++....++..   ..+..++....        +.+.++.
T Consensus       243 i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~  319 (1204)
T 3a6p_A          243 ITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFL  319 (1204)
T ss_dssp             HHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred             HHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHH
Confidence            33332  6666666554   4578999999999998733  3332222221   11334444432        1245666


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHH-----------CCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          564 EEAAWAISNASSRGTHDQIKYLVT-----------EGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       564 ~~a~~aL~nl~~~~~~~~~~~l~~-----------~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                      +..+..+..+..    . ...++.           .++++.+..+..+++..+...++.....+++.
T Consensus       320 k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          320 KRLCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            666666666652    1 122221           12466666666666666666666555545443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.46  E-value=1.3  Score=52.39  Aligned_cols=207  Identities=16%  Similarity=0.144  Sum_probs=123.4

Q ss_pred             ChHHHHHhcCCCChHHHHHHHHHHHHhhC-CCCCCchhHhhcCCHHHHHHHhcc---CCchHHHHHHHHHHHHh----cc
Q 035507          335 AVPIFVKLLASPSDDVREQAVWALGNVAA-DSSGCRDLVLSEGALIPLLAQLNE---HTELSMLRIATTTLSNL----CR  406 (684)
Q Consensus       335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~-~~~~~r~~i~~~g~l~~Ll~~L~~---~~~~~v~~~a~~~L~nL----~~  406 (684)
                      ++..+.+++.+......+ |+++|..... -.|. .+      .+..+..++..   ..++.++..+.-+++.|    |.
T Consensus       357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt-~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~  428 (1056)
T 1lsh_A          357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQAT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  428 (1056)
T ss_dssp             HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCC-HH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhc
Confidence            355556666665443333 4444433221 1121 12      24445555532   23455666566555555    44


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC-----C--CcccHh
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-----P--SPSVLT  479 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~-----~--~~~v~~  479 (684)
                      ..+......+..+...+.+.+...+.+-+.-++.+|+|+. .  +         ..++.|.+++..     .  ...++.
T Consensus       429 ~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g-~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~  496 (1056)
T 1lsh_A          429 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-Q--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  496 (1056)
T ss_dssp             TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-C--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC-C--h---------hHHHHHHHhhcCccccccccchHHHH
Confidence            4322233335566666667777888888999999999998 2  1         356777777742     1  235778


Q ss_pred             HHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhcc-CCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc-
Q 035507          480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN-  557 (684)
Q Consensus       480 ~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~-  557 (684)
                      .|+++|..++...+...+        +.++++..+ ..++++|..|+..|..-. -+..         .+..+...+.. 
T Consensus       497 aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~---------~l~~ia~~l~~E  558 (1056)
T 1lsh_A          497 EAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFESK-PSVA---------LVSMVAVRLRRE  558 (1056)
T ss_dssp             HHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHH---------HHHHHHHHHhhC
Confidence            899999999876654433        456666632 238899999988875431 1212         24445555554 


Q ss_pred             CCHhHHHHHHHHHHHhhcCCCH
Q 035507          558 AEFDIKEEAAWAISNASSRGTH  579 (684)
Q Consensus       558 ~~~~v~~~a~~aL~nl~~~~~~  579 (684)
                      .+..|.......|.+++....+
T Consensus       559 ~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          559 PNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSG
T ss_pred             chHHHHHHHHHHHHHHHhcCCc
Confidence            4788888888888888886655

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.30  E-value=3.5  Score=48.65  Aligned_cols=243  Identities=13%  Similarity=0.133  Sum_probs=141.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---CCcHHHHHHcC---CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCC
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIE---SMPIEEVIESG---VVPRFVEFLMREDYPQLQFQAAWALTNIASGT  323 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~---~~~~~~ii~~g---~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~  323 (684)
                      .+-.+++.|..-+.+........+..   ..   ..-.+.+...|   .+..+.+++.+..- .. .+|+++|..... .
T Consensus       312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~---~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l-~~-~ea~~~l~~~~~-~  385 (1056)
T 1lsh_A          312 KFLRLTAFLRNVDAGVLQSIWHKLHQ---QKDYRRWILDAVPAMATSEALLFLKRTLASEQL-TS-AEATQIVASTLS-N  385 (1056)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHTT---SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhc---cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCC-CH-HHHHHHHHHhhc-c
Confidence            45566777776554433332222211   00   01223344444   45555666666542 22 225555543332 1


Q ss_pred             chhHHHHHhcCChHHHHHhcCC----CChHHHHHHHHHHHHhhC----CCCCCchhHhhcCCHHHHHHHhc---cCCchH
Q 035507          324 SENTKVVIEHDAVPIFVKLLAS----PSDDVREQAVWALGNVAA----DSSGCRDLVLSEGALIPLLAQLN---EHTELS  392 (684)
Q Consensus       324 ~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~~L~nLa~----~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~  392 (684)
                      .....     ..+..+..++.+    .++.+++.|+.++++++.    +.+.|...     .++++...+.   ...+.+
T Consensus       386 ~~Pt~-----e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~-----~v~~i~~~l~~~~~~~~~~  455 (1056)
T 1lsh_A          386 QQATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDE-----LLQPLHDLLSQSSDRAKEE  455 (1056)
T ss_dssp             CCCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGG-----GTHHHHHHHHHHHHTTCHH
T ss_pred             CCCCH-----HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHH-----HHHHHHHHHHHHHhcCChH
Confidence            11111     235556666665    467888999999988863    33333222     2444444432   344666


Q ss_pred             HHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC-------CcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHH
Q 035507          393 MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS-------NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGR  465 (684)
Q Consensus       393 v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~  465 (684)
                      -...++.+|+|+-..          ..++.+.+++..       ....++..|+++|..+. ...+...        -+.
T Consensus       456 ~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~-~~~p~~v--------~~i  516 (1056)
T 1lsh_A          456 EIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA-KRDPRKV--------QEI  516 (1056)
T ss_dssp             HHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG-GTCHHHH--------HHH
T ss_pred             HHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhh-hhchHHH--------HHH
Confidence            778899999998653          456777777642       23578899999999998 5444333        355


Q ss_pred             HHHhc--CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH
Q 035507          466 LVELL--GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE  537 (684)
Q Consensus       466 L~~lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  537 (684)
                      +.++.  ...++.+|..|+..|.  -+..+ .       ..+..+...+....+..|.......|.+++..+..
T Consensus       517 l~~i~~n~~e~~EvRiaA~~~Lm--~t~P~-~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          517 VLPIFLNVAIKSELRIRSCIVFF--ESKPS-V-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHCTTSCHHHHHHHHHHHH--HTCCC-H-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHhcCCCCChHHHHHHHHHHH--HHCcC-H-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            67776  4467788888888773  22232 1       13556677776655888999999999999885433

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.14  E-value=1.3  Score=43.89  Aligned_cols=172  Identities=12%  Similarity=0.078  Sum_probs=99.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCC----hHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCC
Q 035507          294 PRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDA----VPIFVKLLAS-PSDDVREQAVWALGNVAADSSGC  368 (684)
Q Consensus       294 ~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~----i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~  368 (684)
                      ..+.++++-+.  +.+.-++..+.-.+. ++.....+.+.+.    +..++..+.+ ..+..+-.++++++|+...... 
T Consensus       106 ~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g-  181 (304)
T 3ebb_A          106 QILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG-  181 (304)
T ss_dssp             HHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH-
T ss_pred             HHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh-
Confidence            44444443332  345555555555554 4444444433222    2233344433 3466688899999999877653 


Q ss_pred             chhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhc-CCcHHHHHHHHHHHH
Q 035507          369 RDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIH-SNDEQVLTDACWALF  443 (684)
Q Consensus       369 r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~al~~L~  443 (684)
                      |+.+...  ...++..+.   .+.+..++..++.++.|++-.. ..........++..+..++. ..|.+....++.+++
T Consensus       182 ~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALG  259 (304)
T 3ebb_A          182 QKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALG  259 (304)
T ss_dssp             HHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            5555431  233333332   4457788888888888887653 12223334445566666664 468999999999999


Q ss_pred             hhccCCChHHHHHHHHhchHHHHHHhcCC
Q 035507          444 GLSGDRNNDKIQAVIEAGVCGRLVELLGH  472 (684)
Q Consensus       444 ~L~~~~~~~~~~~~~~~g~l~~L~~lL~~  472 (684)
                      ++. ..+.+..+.....|+-..+-.....
T Consensus       260 tL~-~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          260 TLI-SDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHH-TTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHH-hCChhHHHHHHHcCHHHHHHHHHhC
Confidence            999 6655544444444655555555544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.02  E-value=2.4  Score=43.59  Aligned_cols=160  Identities=14%  Similarity=0.134  Sum_probs=110.4

Q ss_pred             hHHHHHhcCChHHHHHHhcc----------CCChhHHHHHHHHHHHHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHH
Q 035507          495 QTQCIINHGAVPCLLALLIH----------NHKNSIKKEVSWIISNIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIK  563 (684)
Q Consensus       495 ~~~~~i~~g~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~  563 (684)
                      -.+.++ .+++..|+.+|..          ..+...+..+..+|..+... ...+..++. ...+..|...+.+..+.++
T Consensus       102 WV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~  179 (383)
T 3eg5_B          102 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMM  179 (383)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred             HHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence            344444 4566777777631          11346777888888888654 355555554 4578899999999999999


Q ss_pred             HHHHHHHHHhhcCCC----HH-HH------HHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhcccccccCCCCCc
Q 035507          564 EEAAWAISNASSRGT----HD-QI------KYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAEKNTDSDIG  631 (684)
Q Consensus       564 ~~a~~aL~nl~~~~~----~~-~~------~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~~~~~~~~~  631 (684)
                      ..|+..|..++....    .+ ..      +...+..-...+++.+.. .+.+....++..+..++...+...       
T Consensus       180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~-------  252 (383)
T 3eg5_B          180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------  252 (383)
T ss_dssp             HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH-------
T ss_pred             HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH-------
Confidence            999999988776432    11 11      112234557888888886 678888888888888887664432       


Q ss_pred             chhHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 035507          632 DINQFAQLVEEAEGLEKIENLQSHDNNEIHEK  663 (684)
Q Consensus       632 ~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~  663 (684)
                      .-......+..+|..+.++.|....++++...
T Consensus       253 ~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          253 FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence            22346778889999999999988888877543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=92.89  E-value=6.8  Score=37.50  Aligned_cols=99  Identities=10%  Similarity=0.084  Sum_probs=70.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHh
Q 035507          253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIE  332 (684)
Q Consensus       253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~  332 (684)
                      .+++..+....+.+...+...+.++....+..    -..+++.++.+..+++ .++|...+..+...+...++...    
T Consensus        19 ~lln~A~~~~~~~kl~~L~qa~el~~~~dp~l----l~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~----   89 (257)
T 3gs3_A           19 DWCNELVIASPSTKCELLAKVQETVLGSCAEL----AEEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP----   89 (257)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGG----HHHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH----
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHccCHhH----HHHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH----
Confidence            34443343233788899999999776644321    1346677888766655 89999999999998864444333    


Q ss_pred             cCChHHHHHhcCCCChHHHHHHHHHHHHh
Q 035507          333 HDAVPIFVKLLASPSDDVREQAVWALGNV  361 (684)
Q Consensus       333 ~g~i~~Li~lL~~~~~~v~~~a~~~L~nL  361 (684)
                       ..++.|..++.++++.+...++.+.+++
T Consensus        90 -~~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           90 -HVINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             -HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             3467888889889999999999988887

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.78  E-value=3.2  Score=42.64  Aligned_cols=155  Identities=14%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             HHHHHhcCCCHHH-HHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHh
Q 035507          253 MMVAGVWSDDNNL-QLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR----E------DYPQLQFQAAWALTNIA  320 (684)
Q Consensus       253 ~lv~~L~s~~~~~-~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~----~------~~~~v~~~A~~~L~~l~  320 (684)
                      .+++.|.++...- ....+..|+..+...+ .-++.+. .+++..|+.+|..    .      .+...+..++.||..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            4555555543221 2234566666565554 4455554 5667777777742    1      12578899999999999


Q ss_pred             cCCchhHHHHHh-cCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CC-chhHh----------hcCCHHHHHHHhcc
Q 035507          321 SGTSENTKVVIE-HDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GC-RDLVL----------SEGALIPLLAQLNE  387 (684)
Q Consensus       321 ~~~~~~~~~i~~-~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~-r~~i~----------~~g~l~~Ll~~L~~  387 (684)
                      . +......++. .+++..+...|.++++.++..++..|+.+|..+. .. ...++          +..-+.+++..+..
T Consensus        87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            8 5555555554 4679999999999999999999999999996654 22 22222          22345567777765


Q ss_pred             CCchHHHHHHHHHHHHhccCCC
Q 035507          388 HTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       388 ~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      +.+.+....+...+..+....+
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~  187 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAE  187 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCS
T ss_pred             CChHHHHHHHHHHHHHHHCCCC
Confidence            6667777777777777777654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=91.74  E-value=0.8  Score=45.38  Aligned_cols=154  Identities=10%  Similarity=0.070  Sum_probs=91.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcC----CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchh
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESG----VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSEN  326 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g----~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  326 (684)
                      +..+.+.+ +=..+.++-++..+|-++... .....+.+.+    ++..+...+.+...+..+..+++++.|+.. ++..
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p-~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g  181 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIKHP-SVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAG  181 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTTSH-HHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHcCc-cHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-Cchh
Confidence            34455544 333456677777777655421 1112222211    233344555444447789999999999998 6667


Q ss_pred             HHHHHhc--CChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          327 TKVVIEH--DAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       327 ~~~i~~~--g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      +..+...  .+++.+...+.+++..++..++..+.|++......++.-.....+..+...+....|.+...-++-+|++|
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            7766643  34555555666678999999999999998421111110001112334444554556888888888889988


Q ss_pred             ccC
Q 035507          405 CRG  407 (684)
Q Consensus       405 ~~~  407 (684)
                      ...
T Consensus       262 ~~~  264 (304)
T 3ebb_A          262 ISD  264 (304)
T ss_dssp             HTT
T ss_pred             HhC
Confidence            865

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.97  E-value=9  Score=39.26  Aligned_cols=139  Identities=13%  Similarity=0.126  Sum_probs=97.8

Q ss_pred             ChhHHHHHHHHHHHHhcCChHHHHHHHH-hCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC----HH-HHHH------
Q 035507          517 KNSIKKEVSWIISNIACGNREQIQAVID-AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT----HD-QIKY------  584 (684)
Q Consensus       517 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~----~~-~~~~------  584 (684)
                      +.....++..+|..+... ...+..++. .+.+..+...+.+.++.++..++..|..++....    .+ ....      
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            345677888888888654 345555554 4578888888888899999999888877766432    11 1111      


Q ss_pred             HHHCCChHHHHhhcc-CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 035507          585 LVTEGCIKPLCDLLQ-CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEK  663 (684)
Q Consensus       585 l~~~g~l~~L~~lL~-~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~  663 (684)
                      ..+..-...+++.+. +.+.+....++..+..++...+...       .-..+...|..+|..+.++.|....++++...
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~-------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            123345667787776 5677888888888888887765432       23346788899999999999999898887644

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=89.10  E-value=18  Score=36.78  Aligned_cols=88  Identities=10%  Similarity=0.120  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc
Q 035507          264 NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL  343 (684)
Q Consensus       264 ~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL  343 (684)
                      +.+...+..++.++-...+.    .-..+++.++++-.+++ .++|...+..|...+....+...     .+++.|..+|
T Consensus        40 ~~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL  109 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLL  109 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            46888888888875543322    22568899999988777 89999999999988874444432     3467888888


Q ss_pred             CCCChHHHHHHHHHHHHh
Q 035507          344 ASPSDDVREQAVWALGNV  361 (684)
Q Consensus       344 ~~~~~~v~~~a~~~L~nL  361 (684)
                      .++++.+...++.+.+++
T Consensus       110 ~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            888999999999988887

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=83.95  E-value=3.9  Score=34.97  Aligned_cols=78  Identities=10%  Similarity=0.169  Sum_probs=55.4

Q ss_pred             ChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhc-hHHHHHHhhcCC--------CHHH
Q 035507          590 CIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE-GLEKIENLQSHD--------NNEI  660 (684)
Q Consensus       590 ~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~L~~L~~~~--------~~~i  660 (684)
                      +++.|..-|+..++.++..+|.+|..++..+...            |...+.+.- .+..+...+..+        +..|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V  117 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV  117 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence            5667888888899999999999999999876443            555555433 233333332222        2679


Q ss_pred             HHHHHHHHHHhcCCCCCCC
Q 035507          661 HEKSVKILETYWCGRVVGP  679 (684)
Q Consensus       661 ~~~a~~ii~~~f~~e~~~~  679 (684)
                      +.+|.++++-.|+++...+
T Consensus       118 R~~AkEl~~ll~d~~~~~~  136 (140)
T 1vdy_A          118 RETAHETISAIFSEENGSG  136 (140)
T ss_dssp             HHHHHHHHHHHTCCSSCCC
T ss_pred             HHHHHHHHHHHhCcCCCCC
Confidence            9999999999999887643

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=82.37  E-value=26  Score=34.09  Aligned_cols=149  Identities=13%  Similarity=0.103  Sum_probs=94.6

Q ss_pred             hHHHHHHHhcCC------cHHHHHHHHHHHHhhccCCChHHHHHHHH--hchHHHHHHhcCCCCcccHhHHHHHHHHHHc
Q 035507          419 ALPALAQLIHSN------DEQVLTDACWALFGLSGDRNNDKIQAVIE--AGVCGRLVELLGHPSPSVLTPALWTVGNIVM  490 (684)
Q Consensus       419 ~l~~L~~lL~~~------d~~v~~~al~~L~~L~~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  490 (684)
                      -+..+..++.++      |.+....++..|..++ . +-..--.+++  ...+..|+ +.....+.+++.|.++|+...+
T Consensus        23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElS-H-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR   99 (315)
T 3qml_C           23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFA-H-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR   99 (315)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGT-T-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhh-h-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence            334445555554      5667889999999998 3 3333333443  34455555 3344566789999999999999


Q ss_pred             CChhhHHHHHhc--CChHHHHHHhcc----C--CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC--CH
Q 035507          491 GDDFQTQCIINH--GAVPCLLALLIH----N--HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA--EF  560 (684)
Q Consensus       491 ~~~~~~~~~i~~--g~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~--~~  560 (684)
                      .+|.....+.+.  .++..+..-|..    .  ....+++.-..+|.-++..+...     ....+..|.+++...  +.
T Consensus       100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~  174 (315)
T 3qml_C          100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDK  174 (315)
T ss_dssp             TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCH
T ss_pred             cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCH
Confidence            999888877652  333333333322    1  13456666677777776654221     134567777777666  89


Q ss_pred             hHHHHHHHHHHHhhc
Q 035507          561 DIKEEAAWAISNASS  575 (684)
Q Consensus       561 ~v~~~a~~aL~nl~~  575 (684)
                      .++..++..+..+..
T Consensus       175 ~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          175 QLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999988887763

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=81.89  E-value=6.4  Score=38.33  Aligned_cols=135  Identities=12%  Similarity=0.089  Sum_probs=89.3

Q ss_pred             ccHhHHHHHHHHHHcCChhhHHHHH-hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHh--CCHHHHH
Q 035507          476 SVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDA--GLIGPLV  552 (684)
Q Consensus       476 ~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--g~l~~Li  552 (684)
                      .....|+..|..+++.-....+.+- +...+..|+ +.... ++.++..|+.+++.....+|..+..+.+.  .++..++
T Consensus        43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            3456778888888776655554433 323333333 22334 67899999999999999999999888753  3444444


Q ss_pred             HHhcc-------CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--ChHHHHHHHHHHHHHHh
Q 035507          553 NLLQN-------AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA--DPKIVTVCLEGLENILK  618 (684)
Q Consensus       553 ~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~--~~~v~~~al~~L~~il~  618 (684)
                      .-|..       ....+++.-+.+|.-++... .++     ....+..|.+++...  ++.++..++.++..++.
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            44432       24466677778888777642 111     134567777777666  89999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	684
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-95
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-78
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-18
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-34
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-12
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-13
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	6e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-13
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	6e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-10
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	4e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.004

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  302 bits (774), Expect = 1e-95
 Identities = 244/468 (52%), Positives = 318/468 (67%), Gaps = 16/468 (3%)

Query: 216 KRESFIKKRR------EGLQSQSYLPSALAPSINLHTKL-EILPMMVAGVWSDDNNLQLE 268
           KR+  + KRR      +G  S     S+++     +++L + LP M   + SDD   QL 
Sbjct: 36  KRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLS 95

Query: 269 ATTQFQKLLSIESM-PIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT 327
           AT +F+++LS E   PI+ VI++GVVPR VEF+       LQ +AAWALTNIASGTS  T
Sbjct: 96  ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155

Query: 328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE 387
           KVV++ DAVP+F++LL + S +V+EQA+WALGNVA DS+  RD VL   A+ P+L  L  
Sbjct: 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL-GLFN 214

Query: 388 HTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLS 446
             + S++R AT TLSNLCRGK P+P +  V  ALP LA+LI+S D + L DACWA+  LS
Sbjct: 215 SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 274

Query: 447 GDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVP 506
            D   + IQAVI+  +  RLVELL H S  V TPAL  VGNIV G+D QTQ +IN G +P
Sbjct: 275 -DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP 333

Query: 507 CLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA 566
            L  LL  + K +IKKE  W ISNI  GN EQIQAVIDA LI PLV LL+ AE+  K+EA
Sbjct: 334 ALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 392

Query: 567 AWAISNASSRGTH--DQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEK 624
            WAISNASS G    D I+YLV++GCIKPLCDLL+ AD +I+ V L+ LENILK+GEA+K
Sbjct: 393 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 452

Query: 625 NTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW 672
                  +IN+ A  +E+A G+EKI N Q ++N++I+EK+ KI+ETY+
Sbjct: 453 EARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 498

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  254 bits (649), Expect = 3e-78
 Identities = 192/428 (44%), Positives = 272/428 (63%), Gaps = 15/428 (3%)

Query: 251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMP-IEEVIESGVVPRFVEFLMREDYPQLQ 309
           +  +V G+ S++   QL+AT   +KLLS E  P I+ +I +G++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 310 FQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR 369
           F++AWALTNIASGTSE TK V++  A+P F+ LLASP   + EQAVWALGN+A D S  R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 370 DLVLSEGALIPLLAQLNEHT----ELSMLRIATTTLSNLCRGKPR-PLFDQVRPALPALA 424
           DLV+  GA+ PLLA L            LR  T TLSNLCR K   P  D V   LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 425 QLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484
           +L+H ND +VL D+CWA      D  N++I+ V++ GV  +LV+LLG     ++TPAL  
Sbjct: 195 RLLHHNDPEVLADSCWA-ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

Query: 485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID 544
           +GNIV G D QTQ +I+ GA+    +LL  N K +I+KE +W +SNI  G ++QIQ V++
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312

Query: 545 AGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK 604
            GL+  LV +L  A+F  ++EAAWAI+N +S GT +QI YLV  G I+PL +LL   D K
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372

Query: 605 IVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKS 664
           I+ V L+ + NI +  E        +G+  + + ++EE  GL+KIE LQ H+N  +++ S
Sbjct: 373 IIQVILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 425

Query: 665 VKILETYW 672
           + ++E Y+
Sbjct: 426 LNLIEKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.5 bits (207), Expect = 7e-18
 Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 8/195 (4%)

Query: 415 QVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH-P 473
            V  ++  + + I+SN+ +    A  A   L        I  +I AG+  + V  LG   
Sbjct: 10  TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69

Query: 474 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC 533
              +   + W + NI  G   QT+ +++ GA+P     L+ +    I ++  W + NIA 
Sbjct: 70  CSPIQFESAWALTNIASGTSEQTKAVVDGGAIP-AFISLLASPHAHISEQAVWALGNIAG 128

Query: 534 GNREQIQAVIDAGLIGPLVNLLQNAEFD-----IKEEAAWAISNASSRGTHDQIKYLVTE 588
                   VI  G I PL+ LL   +             W +SN   R  +        E
Sbjct: 129 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN-LCRNKNPAPPLDAVE 187

Query: 589 GCIKPLCDLLQCADP 603
             +  L  LL   DP
Sbjct: 188 QILPTLVRLLHHNDP 202

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 7/239 (2%)

Query: 171 CHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQS 230
              +       L+        L     E            Q V L   + +      L++
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

Query: 231 QSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIES 290
              + +              L +  + + +   N+Q EAT     + +     I++V+  
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 291 GVVPRFVEFLMREDYPQLQFQAAWALTNIAS-GTSENTKVVIEHDAVPIFVKLLASPSDD 349
           G+VP  V  ++ +   + Q +AAWA+TN  S GT E    ++    +   + LL++    
Sbjct: 314 GLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372

Query: 350 VREQAVWALGNV--AADSSGCRD---LVLSEGALIPLLAQLNEHTELSMLRIATTTLSN 403
           + +  + A+ N+  AA+  G  +   +++ E   +  +  L  H   S+ + +   +  
Sbjct: 373 IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (126), Expect = 6e-08
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 502 HGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEF- 560
           + +V  ++  +  N+  S  +        ++   +  I  +I AGLI   V+ L   +  
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71

Query: 561 DIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG 620
            I+ E+AWA++N +S GT +Q K +V  G I     LL      I    +  L NI   G
Sbjct: 72  PIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 621 EA 622
            A
Sbjct: 131 SA 132

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 1e-34
 Identities = 61/447 (13%), Positives = 125/447 (27%), Gaps = 69/447 (15%)

Query: 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352
           +P+ V++L  +D  + Q   A+ + +         + V +   +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412
            A  AL N+   S+  +     +  +   ++ L       + +  T  L NL        
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 413 FDQVRPALPALAQLI---------------HSNDEQVLTDACWALFGLSGDRNNDKIQAV 457
                       ++I                  D +V  +A   L  LS      +    
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ-TMR 181

Query: 458 IEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-- 515
             +G+   L+  + +   +           + +  +   +           L     N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 516 -----------HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKE 564
                        + +              N +    +  +  I   +NL+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 565 EAAWAISNASSRGTHDQIKY-----LVTEGCIKPLCDLLQCADPKIVTVCLEGLENI--- 616
           EA        +               + E  +  +  LLQ  +  +V      L N+   
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 617 ------------------LKVGEAEKNTDSDI------------GDINQFAQLVEEAEGL 646
                             L       +   DI                Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 647 EKIENL-QSHDNNEIHEKSVKILETYW 672
             I NL +S  + +  E +  +L   W
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 4e-14
 Identities = 33/303 (10%), Positives = 75/303 (24%), Gaps = 17/303 (5%)

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRP-ALPALAQLIHSNDEQV 434
           G  IP   Q     +     I    + + C           +   +  L  L+ S ++ V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDF 494
              A  AL  L    +                V LL     + +   L  +   +   D 
Sbjct: 61  QQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119

Query: 495 QTQCIINHGAVPCLLALLI--------------HNHKNSIKKEVSWIISNIACGNREQIQ 540
             + +I          ++I                    +    +  + N++  +  +  
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 541 AVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC 600
               +GLI  L+  +QN     + +     +                    + L    + 
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 601 ADPKIVTV-CLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNE 659
           A  +  +  C     + +     +     +  +      L         +  +     + 
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 660 IHE 662
             E
Sbjct: 300 TLE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 2e-13
 Identities = 34/308 (11%), Positives = 86/308 (27%), Gaps = 27/308 (8%)

Query: 290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDD 349
           SG              P++ F A   L N++S  +    +      +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 350 VR------EQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ--------LNEHTELSMLR 395
            R      E  +  L N++            +       A          +  ++  M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 396 IATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQ 455
                L           +     A+     L+  + +    +AC                
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 456 A-----VIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 510
                  ++     ++  LL   +  V+      + N+          ++ +   P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 511 LLIHNHKNS-----IKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFD-IKE 564
           LL  +  N+     I     + + N+     +  +    + ++  ++NL +++      E
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 565 EAAWAISN 572
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 9/136 (6%)

Query: 279 IESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPI 338
              M     ++   +P+     ++     +    A  L+N++         V+ +   P 
Sbjct: 319 SSGMSQLIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPE 375

Query: 339 FVKLL------ASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELS 392
             +LL       S S+D+   A + + N+ A          S   L  ++          
Sbjct: 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK 435

Query: 393 MLRIATTTLSNLCRGK 408
               A   LS++   K
Sbjct: 436 AAEAARLLLSDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (221), Expect = 2e-19
 Identities = 84/416 (20%), Positives = 150/416 (36%), Gaps = 14/416 (3%)

Query: 237 ALAPSINLHTKLEI----LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGV 292
           A+   IN     E+    +P +   +  +D  +  +A     +L   E+     +    +
Sbjct: 1   AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 60

Query: 293 VPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVRE 352
           V   V  +   +  +     A  L N++    E    + +   +P  VK+L SP D V  
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLF 119

Query: 353 QAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPL 412
            A+  L N+     G +  V   G L  ++A LN+     +              +   L
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 413 FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH 472
                    AL  ++ +   + L      +  +    +++K  A++EAG    L   L  
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTD 238

Query: 473 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA 532
           PS  ++   LWT+ N+    D  T+     G +  L+ LL  +  N +    + I+SN+ 
Sbjct: 239 PSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLT 294

Query: 533 CGNREQIQAVIDAGLIGPLVNLLQNAEFDIK--EEAAWAISNASSRGTHDQIKYLVT--E 588
           C N +    V   G I  LV  +  A       E A  A+ + +SR    ++        
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354

Query: 589 GCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAE 644
             +  +  LL       +     GL   L +  A      + G I +  QL+  A 
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH 410

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 1e-15
 Identities = 69/395 (17%), Positives = 124/395 (31%), Gaps = 28/395 (7%)

Query: 245 HTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED 304
                 L  MVA +   +       T   Q L          ++ SG     V  +    
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 305 YPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAAD 364
           Y +L       +  + S  S N   ++E   +      L  PS  + +  +W L N++  
Sbjct: 199 YEKLL-WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257

Query: 365 SSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALA 424
           ++    +    G L+ LL   + +       I +    N  + K          AL    
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317

Query: 425 QLIHSNDEQVLTDACWALFGLS--GDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPAL 482
                + E +   A  AL  L+           AV        +V+LL  PS   L  A 
Sbjct: 318 LR-AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376

Query: 483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKN---------------------SIK 521
             +   +         +   GA+P L+ LL+  H++                      I 
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436

Query: 522 KEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQ 581
           +  +  +  +A  +      +     I   V LL +   +I+  AA  +   +     + 
Sbjct: 437 EGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEA 493

Query: 582 IKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENI 616
            + +  EG   PL +LL   +  + T     L  +
Sbjct: 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 2e-12
 Identities = 54/436 (12%), Positives = 132/436 (30%), Gaps = 34/436 (7%)

Query: 145 LKSLTSFCSGSCAIKFPSLEVLVVDDC-HNMMIFSRGELSAPMLHKVQLKTWDKEHSAWK 203
           + +L +        K        +      +   +   L+        L   ++E     
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 204 DDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDN 263
                    VN+ R    +K          + S  + +     +   +  +   +     
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241

Query: 264 NLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGT 323
            L        + L        ++    G++   V+  +  D   +   AA  L+N+    
Sbjct: 242 RLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCNN 297

Query: 324 SENTKVVIEHDAVPIFVKLLASPSDDVR--EQAVWALGNVAADS---SGCRDLVLSEGAL 378
            +N  +V +   +   V+ +    D     E A+ AL ++ +        ++ V     L
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 357

Query: 379 IPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDA 438
             ++  L+  +   +++     + NL          + + A+P L QL+    +      
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417

Query: 439 CWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQC 498
                                     +   + G     ++      +  +      +   
Sbjct: 418 SMGG---------------------TQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IV 455

Query: 499 IINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA 558
           I     +P  + LL ++   +I++  + ++  +A  ++E  +A+   G   PL  LL + 
Sbjct: 456 IRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSR 513

Query: 559 EFDIKEEAAWAISNAS 574
              +   AA  +   S
Sbjct: 514 NEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 2e-13
 Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 7/240 (2%)

Query: 286 EVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFV-KLLA 344
            V+   + P   E     D  Q +  A   L ++     +N     +   + + V + L 
Sbjct: 12  RVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE 69

Query: 345 SPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL 404
           + +  +R +A   +G  + + +  ++ VL  GAL  LL  L+     ++   A   +S L
Sbjct: 70  AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 129

Query: 405 CRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC 463
            R +    L          L + +    +++   + + L  L    + +    +   G+ 
Sbjct: 130 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 188

Query: 464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKE 523
            +LV L+           L  + ++V   DF             L  LL H  +   + E
Sbjct: 189 QQLVALVRTEHSPFHEHVLGALCSLV--TDFPQGVRECREPELGLEELLRHRCQLLQQHE 246

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 1/145 (0%)

Query: 247 KLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYP 306
            L  L  ++  +  D  +            L  E                +   M++   
Sbjct: 99  GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 158

Query: 307 QLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS- 365
           +L+ ++A+ L N+  G  E+   +     V   V L+ +      E  + AL ++  D  
Sbjct: 159 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 218

Query: 366 SGCRDLVLSEGALIPLLAQLNEHTE 390
            G R+    E  L  LL    +  +
Sbjct: 219 QGVRECREPELGLEELLRHRCQLLQ 243

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 5e-13
 Identities = 51/489 (10%), Positives = 143/489 (29%), Gaps = 32/489 (6%)

Query: 136 IEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTW 195
           I K + + +L  L              + +L  D   +  I    +   P  H+ +    
Sbjct: 286 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQ 345

Query: 196 DKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMV 255
             +    +++ +   +  +    S    R+    +   L +     +     L  +  ++
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDEL-----LPHILPLL 400

Query: 256 AGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWA 315
             +      +  E+       ++   M         ++P  ++ L  +    ++    W 
Sbjct: 401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK-ALVRSITCWT 459

Query: 316 LTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSE 375
           L+  A               +   +K +   +  V+E A  A   +  ++       L+ 
Sbjct: 460 LSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAY 519

Query: 376 GALIPLLAQLNEHTELSMLRIATTTLSNLCRG-----KPRPLFDQVRPALPALAQLIHSN 430
             ++  L       +   L I    +  L                + P L      +  +
Sbjct: 520 --ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWN-MLKD 576

Query: 431 DEQVLTDACWALFGLSGDRN---------------NDKIQAVIEAGVCGRLVELLGHPSP 475
           +++ L      L  ++                   N   + + +A +     +    P  
Sbjct: 577 EDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK 636

Query: 476 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGN 535
             +  AL  +  +  G     + ++    +  L+   + +    +++    ++ ++    
Sbjct: 637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 696

Query: 536 REQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLC 595
            + ++  I    +  L   L      +   A WAI   S +   +   Y+     +  L 
Sbjct: 697 FQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLV 753

Query: 596 DLLQCADPK 604
           +++   +  
Sbjct: 754 EIINRPNTP 762

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 48/321 (14%), Positives = 101/321 (31%), Gaps = 13/321 (4%)

Query: 248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQ 307
              L  ++  + S+D   +  +    +  +          +   +    +  +     P 
Sbjct: 45  NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSS-PL 103

Query: 308 LQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG 367
           ++      +T IAS            D +P    LL S   +  E A  AL  +  DS+ 
Sbjct: 104 IRATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 159

Query: 368 CRDLVLSEG---ALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALA 424
             D  + +     +IP   Q  +H+   +   A   ++     + + L   +      L 
Sbjct: 160 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLF 219

Query: 425 QLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWT 484
            L    + +V  + C AL  L   R +  +  +    +   +++       +V   AL  
Sbjct: 220 ALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN--IVEYMLQRTQDQDENV---ALEA 274

Query: 485 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVID 544
               +   +      +    +P L+ +L++  K S    +               +  I 
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 545 AGLIGPLVNLLQNAEFDIKEE 565
                      Q+ E  I+EE
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 59/474 (12%), Positives = 131/474 (27%), Gaps = 34/474 (7%)

Query: 121 EIILEDDISIAKSLFIEKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSRG 180
           +   ED I        E     +        CS +      ++    +      ++    
Sbjct: 345 QQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL 404

Query: 181 ELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQQ-----VNLKRESFIKKRREGLQSQSYLP 235
                ++ +  +             +   + +     +    +     R     + S   
Sbjct: 405 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 464

Query: 236 SALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPR 295
             +           ++  ++  +  D N    EA       L  E+        + ++  
Sbjct: 465 HWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDT 523

Query: 296 FVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDD--VREQ 353
            V    +  +  L        T   S      K       +P  ++      D+      
Sbjct: 524 LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 583

Query: 354 AVWALGNVAA---------------DSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIAT 398
            +  L +VA                         L++  L        E  +   + +A 
Sbjct: 584 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL 643

Query: 399 TTLSNLCRGKPRPLFDQVRPA--LPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQA 456
             LS L  G    +   V  +  L  + Q +     +V   + +AL G         ++ 
Sbjct: 644 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV-RQSSFALLGDLTKACFQHVKP 702

Query: 457 VIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV--MGDDFQTQCIINHGAVPCLLALLIH 514
            I       L   L     SV   A W +G I   MG + Q         +  L+ ++  
Sbjct: 703 CIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI---PMVLHQLVEIINR 758

Query: 515 -NHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAA 567
            N   ++ +  +  I  +     +++  ++    I P    L+N   + ++++A
Sbjct: 759 PNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ-FIRPWCTSLRNIRDNEEKDSA 811

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 2e-10
 Identities = 51/379 (13%), Positives = 118/379 (31%), Gaps = 43/379 (11%)

Query: 306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADS 365
              +F A   L       S       E   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 366 SGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ--VRPALPAL 423
           S  ++  +    ++  L       +  +  I++  L  +    P               +
Sbjct: 74  SKVKEYQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 424 AQLIHS-----NDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVL 478
              + S      D  V  +A   +  +   +    +       +   L+  L  P  +V 
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQLTSPRLAVR 189

Query: 479 TPALWTVGNIV--MGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR 536
              +  +G++V   G+            +  LL+ L  N   S  +     I+ I+    
Sbjct: 190 KRTIIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG 243

Query: 537 EQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCD 596
            +I   ++  +I  +V      + +++E    A  +   R   +   ++           
Sbjct: 244 HRIGEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV----------- 291

Query: 597 LLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD 656
                   I+ +CL+ L           + + +  +        ++ +G +   +     
Sbjct: 292 ------STIINICLKYLT---YDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 342

Query: 657 NNEIHEKSVKILETYWCGR 675
           + ++   + K L+     R
Sbjct: 343 SWKVRRAAAKCLDAVVSTR 361

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 4e-07
 Identities = 41/292 (14%), Positives = 88/292 (30%), Gaps = 46/292 (15%)

Query: 231  QSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEAT-TQFQKLLSIESMPIEEVIE 289
              +  + +    N    +++L M+   V+S    L  + +     K ++  +    +   
Sbjct: 753  LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 812

Query: 290  SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDD 349
            + V     +         ++  A  +L  +      +  +  + +   + ++  +SPS++
Sbjct: 813  AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH----HIDLSGQLELKSVILEAFSSPSEE 868

Query: 350  VREQAVWALGNVAA--------------------------------DSSGCRDLVLSEGA 377
            V+  A +ALG+++                                  S+    L      
Sbjct: 869  VKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 928

Query: 378  LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTD 437
            +  LL +  E  E     +    L  L    P  L       LP L   + S      + 
Sbjct: 929  IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-------LPRLKGYLISGSSYARSS 981

Query: 438  ACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIV 489
               A+     D        +      G  ++ L  P  +V   AL T  +  
Sbjct: 982  VVTAVKFTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 1e-05
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 329  VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEH 388
            ++     +P     L S S   R   V A+    +D     D +L     I    +  E 
Sbjct: 957  LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--CIGDFLKTLED 1014

Query: 389  TELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLT 436
             +L++ R+A  T ++    KP  + D +   LP L        E +  
Sbjct: 1015 PDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 4e-10
 Identities = 55/345 (15%), Positives = 110/345 (31%), Gaps = 30/345 (8%)

Query: 195 WDKEHSAWKDDLNTTIQQVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMM 254
            +   + W + +   +  V     +   K    L++  Y+   + P        EIL  +
Sbjct: 118 AEIPVNQWPELIPQLVANVTNPNSTEHMKEST-LEAIGYICQDIDPEQLQDKSNEILTAI 176

Query: 255 VAGVWSDDNN--LQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQA 312
           + G+  ++ +  ++L AT      L       ++  E   + + V    +    +++  A
Sbjct: 177 IQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 236

Query: 313 AWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLV 372
              L  I S   +  +  +      I ++ + S  D+V  Q +    NV  +        
Sbjct: 237 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 296

Query: 373 LSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQ----------------- 415
                        ++      L+     L+     +     D                  
Sbjct: 297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 356

Query: 416 ------VRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL 469
                 V   LP + + I + D +    A  A   +       +++ ++       L+EL
Sbjct: 357 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ-AMPTLIEL 415

Query: 470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH 514
           +  PS  V   A WTVG I    +   +  IN   +  LL  LI 
Sbjct: 416 MKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIE 457

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 25/282 (8%), Positives = 64/282 (22%), Gaps = 46/282 (16%)

Query: 300 LMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALG 359
           L+ +     +  +A  L                 DAV + ++  +  +   R+   + LG
Sbjct: 27  LLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILG 75

Query: 360 NVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPA 419
            +        +          L           +   A  + +  C+  P          
Sbjct: 76  QIKICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKI 125

Query: 420 LPALAQLIHSNDEQVLTDACWALF----------GLSGDRNNDKIQAVIEAGVCGRLVEL 469
           +             V     +A+            ++  ++ +       A         
Sbjct: 126 VEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 185

Query: 470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS 529
                   +         + +          +   +  L   L  N    +  ++     
Sbjct: 186 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT---VYDDIIEAAG 242

Query: 530 NIACGNREQIQAVIDAGLIGPLVNLLQNAE-FDIKEEAAWAI 570
            +            D  L+  L  +L   +  +I   A   +
Sbjct: 243 ELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDKL 273

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 27/159 (16%)

Query: 329 VVIEHDAVPIFVKLLASPSDDVREQAVWALG-----NVAADSSGCRDLVLSEGALIPLLA 383
           + + +  V     L+    + VR    + L       +  D      + +++   +  L 
Sbjct: 61  IAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLE 120

Query: 384 QLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACW--- 440
           Q+    +  +                       R     L + +   D QV         
Sbjct: 121 QMAADRDYLVRAYV-----------------VQRIPPGRLFRFMRDEDRQVRKLVAKRLP 163

Query: 441 --ALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSV 477
             +L  ++ D   +  + V        L+ELL  P  +V
Sbjct: 164 EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTV 202

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 25/253 (9%), Positives = 78/253 (30%), Gaps = 14/253 (5%)

Query: 152 CSGSCAIKFPSLEVLVVDDCHNMMIFSRGELSAPMLHKVQLKTWDKEHSAWKDDLNTTIQ 211
                +        +       +           +     L   ++     +   +    
Sbjct: 347 VIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPA 406

Query: 212 QVNLKRESFIKKRREGLQSQSYLPSALAPSINLHTKLEILPMMVAGVWSDDNNLQLEATT 271
            V L  ++  + R   ++    L   L          ++  + +A +      ++  AT+
Sbjct: 407 IVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAWLVDHVYAIREAATS 463

Query: 272 QFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI 331
             +KL+       +E   + ++P+ +      +Y        + +  ++    ++   + 
Sbjct: 464 NLKKLVEKFG---KEWAHATIIPKVLAMSGDPNYLHRM-TTLFCINVLSEVCGQD---IT 516

Query: 332 EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTEL 391
               +P  +++   P  +VR     +L  +             +  + P+L +L +  ++
Sbjct: 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDV 572

Query: 392 SMLRIATTTLSNL 404
            +   A   L+ L
Sbjct: 573 DVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 7/114 (6%)

Query: 249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQL 308
            I+P ++A    D N L    T     +LS E    +++    ++P  +  +  +    +
Sbjct: 480 TIIPKVLAMS-GDPNYLHRMTTLFCINVLS-EVCG-QDITTKHMLPTVLR-MAGDPVANV 535

Query: 309 QFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVA 362
           +F  A +L  I      +T   ++ +  PI  KL      DV+  A  AL  ++
Sbjct: 536 RFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	684
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.77
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.75
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.65
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.6
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.54
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.46
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.32
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.29
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.28
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.25
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.15
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.1
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.97
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.95
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.94
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.78
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.51
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.38
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.14
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.11
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.58
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.34
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.93
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.38
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.25
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.01
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.85
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	86.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	84.37

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-52  Score=459.87  Aligned_cols=472  Identities=50%  Similarity=0.731  Sum_probs=413.9

Q ss_pred             hhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCCCCC-CCCCCC-----CCccchhhhccHHHHHHHhcCCCHHHHHHHHHH
Q 035507          200 SAWKDDLNTTIQQVNLKRE-SFIKKRREGLQSQSY-LPSALA-----PSINLHTKLEILPMMVAGVWSDDNNLQLEATTQ  272 (684)
Q Consensus       200 ~~~~~~~~~~~~~r~~~r~-~~~krr~~~~~~~~~-~~~~~~-----~~~~~~~~~~~l~~lv~~L~s~~~~~~~~a~~~  272 (684)
                      +..++|.+..+|+||+||+ .++|||+........ .+....     .........+.++.++..++++|.+.+..|+..
T Consensus        20 e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~a~~~   99 (503)
T d1wa5b_          20 ELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVK   99 (503)
T ss_dssp             CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHHHHHSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            3456778889999999999 999999764322111 000000     001112233578999999999999999999999


Q ss_pred             HHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHH
Q 035507          273 FQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVR  351 (684)
Q Consensus       273 L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~  351 (684)
                      ++++++... ++.+.+++.|++|.|+++++.+.++.++..|+|+|++++.+++..+..+.+.|+++.++.+|.+++.+++
T Consensus       100 ~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~  179 (503)
T d1wa5b_         100 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK  179 (503)
T ss_dssp             HHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHH
T ss_pred             HHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHH
Confidence            999997655 7889999999999999999876658899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC-CCCChhhhhchHHHHHHHhcCC
Q 035507          352 EQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK-PRPLFDQVRPALPALAQLIHSN  430 (684)
Q Consensus       352 ~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~  430 (684)
                      +.|+|+|+||+.+++.+|+.+...|++++++.++ .+.+..+.+.++|++++++... +........+++|.+..++.+.
T Consensus       180 ~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~  258 (503)
T d1wa5b_         180 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM  258 (503)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc
Confidence            9999999999999988999999999999999998 6677889999999999999886 5566677889999999999999


Q ss_pred             cHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHH
Q 035507          431 DEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA  510 (684)
Q Consensus       431 d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~  510 (684)
                      |++++..++|++.+++ ...++....+.+.|+++.++.++.++++.++..|++++++++.+.+..+..+++.|+++.+..
T Consensus       259 d~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~  337 (503)
T d1wa5b_         259 DTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL  337 (503)
T ss_dssp             CHHHHHHHHHHHHHHH-SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhc-cCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence            9999999999999999 888888899999999999999999999999999999999999999989999999999999999


Q ss_pred             HhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC--CHHHHHHHHHC
Q 035507          511 LLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG--THDQIKYLVTE  588 (684)
Q Consensus       511 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~  588 (684)
                      ++.++ ++.+++.++|+++|++.+++.++..+++.|+++.++.++...+.+++.+|+|+++|++..+  .++...++++.
T Consensus       338 ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~  416 (503)
T d1wa5b_         338 LLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ  416 (503)
T ss_dssp             HTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHT
T ss_pred             HhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHC
Confidence            99998 9999999999999999999999999999999999999999999999999999999999754  35678899999


Q ss_pred             CChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 035507          589 GCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKIL  668 (684)
Q Consensus       589 g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii  668 (684)
                      |++++|+++|+..|++++..++++|.+++..++......  ....+++...++++||+++|+.|++|+|++|+++|.+|+
T Consensus       417 ~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~--~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il  494 (503)
T d1wa5b_         417 GCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII  494 (503)
T ss_dssp             TCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh--cccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999999999999999999999999999998776532211  123578999999999999999999999999999999999


Q ss_pred             HHhcCCCC
Q 035507          669 ETYWCGRV  676 (684)
Q Consensus       669 ~~~f~~e~  676 (684)
                      ++||++||
T Consensus       495 ~~~f~~~~  502 (503)
T d1wa5b_         495 ETYFGEEE  502 (503)
T ss_dssp             HHHSSSCC
T ss_pred             HHHcCCcC
Confidence            99998876

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.8e-45  Score=391.22  Aligned_cols=416  Identities=46%  Similarity=0.763  Sum_probs=385.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      +.++.+++.++|+|++.|..|+.+++++++... ++++.+++.|++|.|+++|++.+++++|..|+++|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            578999999999999999999999999987655 6688999999999999999876658999999999999999889999


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCC----chHHHHHHHHHHHH
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHT----ELSMLRIATTTLSN  403 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~----~~~v~~~a~~~L~n  403 (684)
                      ..+++.|+++.|+.+|.++++.+++.|+++|+|++.+++.++..+...|++..++..+....    .....+.++|++++
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888999999999999999996443    23567789999999


Q ss_pred             hccCC-CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHH
Q 035507          404 LCRGK-PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPAL  482 (684)
Q Consensus       404 L~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al  482 (684)
                      ++... +........+++|.+..++.+++++++..+++++.+++ ..++.....+...|+++.++.++.++++.++..|+
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccc-hhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence            99987 45555667889999999999999999999999999999 88888888888999999999999999999999999


Q ss_pred             HHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhH
Q 035507          483 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDI  562 (684)
Q Consensus       483 ~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v  562 (684)
                      +++++++.+++.....+++.|+++.+..++.++ +++++..|+|+++|++.+..+....+.+.|++|.++.++.+.++++
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v  330 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  330 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHH
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHH
Confidence            999999999988889999999999999999998 9999999999999999988899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHH
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEE  642 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~  642 (684)
                      +..|+|+++|++..++.+....+.+.|++++|+++++..+++++..+++++.++++.++..       +..+++...+++
T Consensus       331 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~-------~~~~~~~~~~~~  403 (434)
T d1q1sc_         331 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEE  403 (434)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhc-------CCcHHHHHHHHH
Confidence            9999999999999888999999999999999999999999999999999999999987654       246779999999


Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 035507          643 AEGLEKIENLQSHDNNEIHEKSVKILETYWC  673 (684)
Q Consensus       643 ~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~  673 (684)
                      .||++.|+.|++|+|++|++.|.+||++||+
T Consensus       404 ~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         404 CGGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=294.37  Aligned_cols=371  Identities=25%  Similarity=0.334  Sum_probs=329.8

Q ss_pred             hhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507          246 TKLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS  324 (684)
Q Consensus       246 ~~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~  324 (684)
                      .+.|.+|.++..+++ .+..++..|+++|.++++..+.....+.+.|+++.++.+|.+++ ++++..|+|+|+|++..++
T Consensus       116 i~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~  194 (503)
T d1wa5b_         116 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDST  194 (503)
T ss_dssp             HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCH
T ss_pred             HHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhH
Confidence            345789999999985 56889999999999998877677788899999999999999888 8999999999999999889


Q ss_pred             hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       325 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      +.+..+.+.|+++.|+.++.+.+..++..++|+|.|++.......+.....++++.++..+ .+.+.+++..++|+++++
T Consensus       195 ~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l  273 (503)
T d1wa5b_         195 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYL  273 (503)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999987665556666678899999888 678889999999999999


Q ss_pred             ccCCCCC-ChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHH
Q 035507          405 CRGKPRP-LFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALW  483 (684)
Q Consensus       405 ~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  483 (684)
                      +...+.. ......++++.++.++.++++.++..++.++++++ .+.+.....+.+.|+++.+..++.++++.++..+++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~-~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~  352 (503)
T d1wa5b_         274 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW  352 (503)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             ccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHH-HHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHH
Confidence            9875322 23344789999999999999999999999999999 888888999999999999999999999999999999


Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC---ChHHHHHHHHhCCHHHHHHHhccCCH
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG---NREQIQAVIDAGLIGPLVNLLQNAEF  560 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~g~l~~Li~ll~~~~~  560 (684)
                      +++|++.+++.....+++.|+++.++.++.+. +..++++|+|+|+|++.+   .++.+..+++.|+++.|+.++...+.
T Consensus       353 ~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~  431 (503)
T d1wa5b_         353 TISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN  431 (503)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCH
T ss_pred             HHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence            99999999998999999999999999999998 999999999999999862   45678889999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCC----------HHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcc
Q 035507          561 DIKEEAAWAISNASSRGT----------HDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVG  620 (684)
Q Consensus       561 ~v~~~a~~aL~nl~~~~~----------~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~  620 (684)
                      ++...++.+|.++...+.          ......+.+.|+++.|..+..+++.++...|..+|..++..+
T Consensus       432 ~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         432 RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            999999999999875321          234456778999999999999999999999999999888654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-31  Score=282.75  Aligned_cols=367  Identities=26%  Similarity=0.391  Sum_probs=323.5

Q ss_pred             hhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCch
Q 035507          247 KLEILPMMVAGVWS-DDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       247 ~~~~l~~lv~~L~s-~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      +.|.+|.+++.|++ +++++|..|+++|.++++..+.....+++.|++|.++++|.+++ ++++..|+++|.+++.++++
T Consensus        54 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          54 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             HTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchH
Confidence            45899999999975 46889999999999998877677888999999999999999887 89999999999999998889


Q ss_pred             hHHHHHhcCChHHHHHhcCCCC-----hHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHH
Q 035507          326 NTKVVIEHDAVPIFVKLLASPS-----DDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTT  400 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~~~~-----~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~  400 (684)
                      .+..+.+.|+++.++.++..++     ......++|++.+++.............++++.++.++ .+.+.+++..++|+
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~  211 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  211 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhh
Confidence            9999999999999999997743     34567889999999987766555555667788888777 67788999999999


Q ss_pred             HHHhccCCCC-CChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHh
Q 035507          401 LSNLCRGKPR-PLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLT  479 (684)
Q Consensus       401 L~nL~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~  479 (684)
                      +.+++...+. .......+++|.++.++.+++++++..+++++.+++ ..++.....+.+.|+++.+..++.++++.++.
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~-~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~  290 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK  290 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHH-hhhhHHHHHHHhccccchHHHhhcccchhhhH
Confidence            9999987532 223334789999999999999999999999999999 88888888999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccC
Q 035507          480 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNA  558 (684)
Q Consensus       480 ~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~  558 (684)
                      .|++++++++.........+.+.|+++.++.++.++ +..++..|+|+++|++. ++.+.+..+.+.|+++.|+++++..
T Consensus       291 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~  369 (434)
T d1q1sc_         291 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK  369 (434)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSS
T ss_pred             HHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCC
Confidence            999999999998888888899999999999999998 99999999999999987 5678888899999999999999999


Q ss_pred             CHhHHHHHHHHHHHhhcC-----CCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHH
Q 035507          559 EFDIKEEAAWAISNASSR-----GTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENIL  617 (684)
Q Consensus       559 ~~~v~~~a~~aL~nl~~~-----~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il  617 (684)
                      +++++..+++++.+++..     ........+.+.|+++.|..+..+++++++..+.++|.+++
T Consensus       370 d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         370 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            999999999999999742     23345566778999999999999999999999999998875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-29  Score=275.60  Aligned_cols=400  Identities=18%  Similarity=0.174  Sum_probs=345.4

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          248 LEILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       248 ~~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      .|.++.+++.|++++++++..|+++|.+++...+.....+.+.|++|.|+.+|++++ ++++..|+++|.+++..+++.+
T Consensus       100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~  178 (529)
T d1jdha_         100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHH
Confidence            478999999999999999999999999998877777788889999999999999988 8999999999999999888999


Q ss_pred             HHHHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhcc
Q 035507          328 KVVIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCR  406 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~  406 (684)
                      ..+.+.|+++.|+.++.+ +...++..+++++.+++.+. ..+..+.+.|++++++..+ .+.+..+...+++++.+++.
T Consensus       179 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~  256 (529)
T d1jdha_         179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhccc
Confidence            999999999999999965 55789999999999998765 4578888999999999998 67788899999999999986


Q ss_pred             CCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcC--CCCcccHhHHHHH
Q 035507          407 GKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLG--HPSPSVLTPALWT  484 (684)
Q Consensus       407 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~  484 (684)
                      ....  .....++++.+++++.++|+.++..++++|++++ ..+......+.+.|+++.++..+.  .+.+.++..|+++
T Consensus       257 ~~~~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~a  333 (529)
T d1jdha_         257 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccc--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhc-cchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHH
Confidence            6422  2334688999999999999999999999999999 888888888999999999999884  4566788999999


Q ss_pred             HHHHHcCChh---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCC--
Q 035507          485 VGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAE--  559 (684)
Q Consensus       485 L~nl~~~~~~---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~--  559 (684)
                      +++++.....   ....+...++++.++.++.++.+..++..+++++.|++... +....+.+.|+++.|++++.+.+  
T Consensus       334 L~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~  412 (529)
T d1jdha_         334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhh-hhhhhhhhcccHHHHHHHHhcCCHH
Confidence            9999976542   34456678999999999987746678899999999998764 66677889999999999996543  


Q ss_pred             --------------------HhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhc
Q 035507          560 --------------------FDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKV  619 (684)
Q Consensus       560 --------------------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~  619 (684)
                                          .++...++.++..++.  .+..+..+.+.|+++.|+++|.++++.++..++.+|.++...
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence                                3456667778888876  567777788999999999999999999999999999987643


Q ss_pred             ccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 035507          620 GEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILET  670 (684)
Q Consensus       620 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~  670 (684)
                      .+              .++.+.+.|++..|.+|.+++|+++++.|..++.+
T Consensus       491 ~~--------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~  527 (529)
T d1jdha_         491 KE--------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR  527 (529)
T ss_dssp             HH--------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             hh--------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            21              35789999999999999999999999999998865

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.8e-29  Score=272.50  Aligned_cols=404  Identities=17%  Similarity=0.171  Sum_probs=339.7

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhH
Q 035507          249 EILPMMVAGVW-SDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENT  327 (684)
Q Consensus       249 ~~l~~lv~~L~-s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  327 (684)
                      +.++.+++.|. +++.+++..|+.+|.++. .+++....+++.|++|.|+.+|++++ ++++..|+++|.+++.+++..+
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~  136 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchhh
Confidence            57899999997 467899999999999975 45567788999999999999999888 8999999999999999888889


Q ss_pred             HHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          328 KVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       328 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      ..+.+.|+++.|+.+|+++++.++..++++|.+++..++..+..+...|++++++..+.......++..+++++.+++..
T Consensus       137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~  216 (529)
T d1jdha_         137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999999999999888777888889999999999998777888999999999999987


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      ..........++++.+..++.+++.+++..+++++.+++ ......   ....|+++.|++++.+++..++..|+++|++
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls-~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH-TTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc-ccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            654445556889999999999999999999999999998 544322   2234789999999999999999999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCCh---HHHHHHHHhCCHHHHHHHhccC-CHhH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNR---EQIQAVIDAGLIGPLVNLLQNA-EFDI  562 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~g~l~~Li~ll~~~-~~~v  562 (684)
                      ++.+++.....+.+.++++.++..+... ..+.++..|+++|.|++....   .....+...+.++.++.++..+ +..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            9998888888889999999999988432 267899999999999987432   2344566789999999999876 5678


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCh----------------------HHHHHHHHHHHHHHhcc
Q 035507          563 KEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADP----------------------KIVTVCLEGLENILKVG  620 (684)
Q Consensus       563 ~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~----------------------~v~~~al~~L~~il~~~  620 (684)
                      +..+++++.|++.  +++....+.+.|+++.+++++.+.+.                      +++..+..++..+....
T Consensus       373 ~~~~~~~l~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~  450 (529)
T d1jdha_         373 IKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHhhcch--hhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCH
Confidence            8899999999987  45566778899999999999975433                      45555555555554321


Q ss_pred             cccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 035507          621 EAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYWCG  674 (684)
Q Consensus       621 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f~~  674 (684)
                      .              ....+.+.|+++.|..+..+++++++..|...+..+-.+
T Consensus       451 ~--------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         451 H--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             H--------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             H--------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence            1              246677899999999999999999999999998776543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-25  Score=237.52  Aligned_cols=372  Identities=17%  Similarity=0.195  Sum_probs=283.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCch
Q 035507          291 GVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRD  370 (684)
Q Consensus       291 g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~  370 (684)
                      +.||.|+++|++++ +++|..|+++|.++|.++++.+..+.+.|+||.|+++|.+++++++..|+++|+||+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999988888888


Q ss_pred             hHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh----------------cCCcHHH
Q 035507          371 LVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI----------------HSNDEQV  434 (684)
Q Consensus       371 ~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL----------------~~~d~~v  434 (684)
                      .+.+.|+++.++..+....+..++..++++|.+++...... ......+++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999988889999999999999999875333 333334444444332                3457889


Q ss_pred             HHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC------CcccHhHHHHHHHHHHcC-----------------
Q 035507          435 LTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP------SPSVLTPALWTVGNIVMG-----------------  491 (684)
Q Consensus       435 ~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~------~~~v~~~al~~L~nl~~~-----------------  491 (684)
                      +..+++++.+++ ..++.........|+++.++.++.+.      .......+...+.+....                 
T Consensus       160 ~~~a~~~l~~~~-~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         160 FFNATGCLRNLS-SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHT-TSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHh-cCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            999999999999 55555555555568889998887531      111122222222111000                 


Q ss_pred             ---------------------------------ChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChH-
Q 035507          492 ---------------------------------DDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNRE-  537 (684)
Q Consensus       492 ---------------------------------~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-  537 (684)
                                                       .......+...++++.++.++....++.++..+++++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                             0001111122345677888876664788899999999999874322 


Q ss_pred             ----HHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CChHHHH
Q 035507          538 ----QIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC------ADPKIVT  607 (684)
Q Consensus       538 ----~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~------~~~~v~~  607 (684)
                          ....+.+.|++|.|+.++.+.+++++..|++++.+++..  ++....+. .++++.++.++..      .+++++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHH
Confidence                223344678999999999999999999999999999973  34444444 4678999998863      2356899


Q ss_pred             HHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 035507          608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQ-SHDNNEIHEKSVKILETYWCGRVVGPQL  681 (684)
Q Consensus       608 ~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~-~~~~~~i~~~a~~ii~~~f~~e~~~~~~  681 (684)
                      .++.+|.++......             ....+.+.||++.|..+. .++++.+++.|..++..+|.+.+..+.+
T Consensus       396 ~a~~~L~~l~~~~~~-------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~~~  457 (457)
T d1xm9a1         396 SACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL  457 (457)
T ss_dssp             HHHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSSCC
T ss_pred             HHHHHHHHHhcCCHH-------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhHhhC
Confidence            999999999864332             457788899999999986 4568899999999999999999887643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-23  Score=222.75  Aligned_cols=363  Identities=16%  Similarity=0.185  Sum_probs=273.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+|.++++|+++++++|..|+.+|.+++..+++.+..+.+.|++|.|+++|++++ +++|..|+++|.+++.++++.+..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5899999999999999999999999998887789999999999999999999888 999999999999999889999999


Q ss_pred             HHhcCChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhc---------------cCCchHH
Q 035507          330 VIEHDAVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLN---------------EHTELSM  393 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~---------------~~~~~~v  393 (684)
                      +.+.|+++.++.++.+ .++.++..|+++|++++..... +...... ++++++..+.               ...+..+
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9999999999998865 6788999999999999987644 3333333 3445544431               3456789


Q ss_pred             HHHHHHHHHHhccCCCCCCh-hhhhchHHHHHHHhcCCc------HHHHHHHHHHHHhhc---------------c----
Q 035507          394 LRIATTTLSNLCRGKPRPLF-DQVRPALPALAQLIHSND------EQVLTDACWALFGLS---------------G----  447 (684)
Q Consensus       394 ~~~a~~~L~nL~~~~~~~~~-~~~~~~l~~L~~lL~~~d------~~v~~~al~~L~~L~---------------~----  447 (684)
                      +..+++++.+++........ ....++++.++.++.+..      ......+...+.+..               .    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999887532222 223567888887775321      111111111111100               0    


Q ss_pred             ------------------------------CCChHHHHHHHHhchHHHHHHhcCC-CCcccHhHHHHHHHHHHcCChh--
Q 035507          448 ------------------------------DRNNDKIQAVIEAGVCGRLVELLGH-PSPSVLTPALWTVGNIVMGDDF--  494 (684)
Q Consensus       448 ------------------------------~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~--  494 (684)
                                                    .........+...++++.++.++.. .++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          0011111223334566777777644 4567788889999999865532  


Q ss_pred             ---hHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC------CHhHHHH
Q 035507          495 ---QTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA------EFDIKEE  565 (684)
Q Consensus       495 ---~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~------~~~v~~~  565 (684)
                         ....+.+.|+++.|+.++.++ ++.++..|+++++|++... +.... +..++++.++.++...      +.+++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~-~~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-LLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-GGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhCh-hHHHH-HHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               233345679999999999998 9999999999999998753 34443 4456899999998643      4578999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhc
Q 035507          566 AAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKV  619 (684)
Q Consensus       566 a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~  619 (684)
                      |+.+|.|++.. +++..+.+.+.|+++.|++++.+. ++.++..|..+|.+++..
T Consensus       397 a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         397 ACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            99999999874 567788889999999999998764 678999999999998654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-18  Score=171.71  Aligned_cols=195  Identities=16%  Similarity=0.137  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHH
Q 035507          306 PQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQ  384 (684)
Q Consensus       306 ~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~  384 (684)
                      .+.+..|+.+|.+++. +.+++..+...|+++.++. ++.+++++++..|+++|++++.+++.++..+...|++++|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6789999999999997 7788888999999999986 7888999999999999999999988888889999999999999


Q ss_pred             hccCCchHHHHHHHHHHHHhccCCC-CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchH
Q 035507          385 LNEHTELSMLRIATTTLSNLCRGKP-RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVC  463 (684)
Q Consensus       385 L~~~~~~~v~~~a~~~L~nL~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l  463 (684)
                      +.+..++.++..++++|++++++.+ ........++++.+++++.++++.++..++++|.+++ ..+++....+.+.|++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL-VGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH-HHCGGGHHHHHHTTHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHH-hccHHHHHHHHHhhhH
Confidence            9778889999999999999998873 3334456889999999999999999999999999999 7788889999999999


Q ss_pred             HHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhc
Q 035507          464 GRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH  502 (684)
Q Consensus       464 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~  502 (684)
                      +.|+.++.++++.++..|+++|++++..++.....+...
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            999999999999999999999999999888776665543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.7e-17  Score=161.51  Aligned_cols=230  Identities=17%  Similarity=0.144  Sum_probs=190.2

Q ss_pred             cCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH-hcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChH
Q 035507          428 HSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE-LLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVP  506 (684)
Q Consensus       428 ~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~  506 (684)
                      ...|.+.+..|+.+|.+++  .+.+....+...|+++.++. +++++++.++..|+++|++++.+++.....+...|++|
T Consensus        27 ~~~~~~~~~~Al~~L~~L~--~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~  104 (264)
T d1xqra1          27 QAADQQEREGALELLADLC--ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR  104 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             cCCCHHHHHHHHHHHHHHH--cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            3457788999999999999  45667777889999998875 78889999999999999999999988888899999999


Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 035507          507 CLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLV  586 (684)
Q Consensus       507 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~  586 (684)
                      .|+.++.+..++.++..|++++++++.+++.....+...|+++.|++++.+.+..++..++++|.+++.. +++....+.
T Consensus       105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~  183 (264)
T d1xqra1         105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLC  183 (264)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHH
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHH
Confidence            9999997654789999999999999999988889999999999999999999999999999999999874 566778888


Q ss_pred             HCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHH--hchHHHHH----Hhh-cCCCHH
Q 035507          587 TEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEE--AEGLEKIE----NLQ-SHDNNE  659 (684)
Q Consensus       587 ~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~--~g~~~~L~----~L~-~~~~~~  659 (684)
                      +.|+++.|+.++++++++++..++++|.++....+...             ..+..  .+....+.    .+. .....+
T Consensus       184 ~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-------------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e  250 (264)
T d1xqra1         184 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-------------RECREPELGLEELLRHRCQLLQQHEEYQE  250 (264)
T ss_dssp             HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH-------------HHHHCGGGCHHHHHHHHHHHHTTCGGGHH
T ss_pred             HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH-------------HHHHHhhhhHHHHHHHHHHhccchHHHHH
Confidence            99999999999999999999999999999986543321             11111  11112222    222 223466


Q ss_pred             HHHHHHHHHHHhcC
Q 035507          660 IHEKSVKILETYWC  673 (684)
Q Consensus       660 i~~~a~~ii~~~f~  673 (684)
                      ..+.+..|++.+|+
T Consensus       251 ~~~~~~~ll~~~~~  264 (264)
T d1xqra1         251 ELEFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcC
Confidence            67889999999885

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-14  Score=159.52  Aligned_cols=381  Identities=13%  Similarity=0.152  Sum_probs=279.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHH
Q 035507          249 EILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTK  328 (684)
Q Consensus       249 ~~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  328 (684)
                      ..++.+...++++++.++..|+.++..++...++   ......++|.+..++.+++ ..+|..++.+|++++..-   ..
T Consensus       203 ~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~---~~  275 (588)
T d1b3ua_         203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAV---GP  275 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHH---CH
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHHh---hh
Confidence            3567778888889999999999999887764331   1233447889999988877 899999999999988621   12


Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC-CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccC
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~  407 (684)
                      .......++.+..++.++++++|..|+.+++.++..-.. .+....-...++.+...+ .+.+..++..++.++..++..
T Consensus       276 ~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~  354 (588)
T d1b3ua_         276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPI  354 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHH
T ss_pred             hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhc
Confidence            233346789999999999999999999999999854322 222222234455555555 677888888888887776543


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      -.  ........+|.+..++.+++++++..++.++..+. ..-.  .. .....+++.+..++.+.++.+|..++.+++.
T Consensus       355 ~~--~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~-~~~~--~~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~  428 (588)
T d1b3ua_         355 LG--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN-EVIG--IR-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL  428 (588)
T ss_dssp             HC--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH-HHSC--HH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             cc--hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-hhcc--hh-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            21  22344678899999999999999999988887766 2111  11 1223578889999999999999999999999


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA  566 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a  566 (684)
                      ++..-...   .+...+.+.+..++.++ ...+|..|+++++.++.. .++.    ....++|.+.+++.+.+...|..+
T Consensus       429 l~~~~~~~---~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~  500 (588)
T d1b3ua_         429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTT  500 (588)
T ss_dssp             HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred             HHHHcChH---hHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHH
Confidence            87532110   11223567788888888 899999999999999762 2221    234588999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchH
Q 035507          567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL  646 (684)
Q Consensus       567 ~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~  646 (684)
                      +.++..+......+    .....+++.+..+++++.+.|+..+.+++..+....+..           .+.     ....
T Consensus       501 ~~~l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~-----------~~~-----~~i~  560 (588)
T d1b3ua_         501 LFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------TLQ-----SEVK  560 (588)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------HHH-----HHHH
T ss_pred             HHHHHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH-----------hHH-----HHHH
Confidence            99999887532222    233458999999999999999999999999997654321           111     2235


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          647 EKIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       647 ~~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                      ..++.|+++++.+|+..|.+.++..
T Consensus       561 ~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         561 PILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            6788899999999999999988753

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.8e-14  Score=153.03  Aligned_cols=380  Identities=12%  Similarity=0.111  Sum_probs=280.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.+.+.+++.++.+|..|+.++..++..-.   .......++|.+..++++++ +.+|..|+.++..++...+..   
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~---  237 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE---LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE---  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC---HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc---HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH---
Confidence            46777888889999999999999999887643   22344567888889888887 899999999999998632221   


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKP  409 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~  409 (684)
                      ......+|.+..++.++++.+|..++.+|++++..-.   ........++.+...+ .+.+.+++..++.++..++....
T Consensus       238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l~  313 (588)
T d1b3ua_         238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHHh
Confidence            1223468889999999999999999999999974322   1222334566666666 67788999999999999988753


Q ss_pred             CCC--hhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHH
Q 035507          410 RPL--FDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGN  487 (684)
Q Consensus       410 ~~~--~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  487 (684)
                      ...  ......++|.+...+.+.++.++..++.++..++ ..-.   .......++|.+..++.++++.++..++.+++.
T Consensus       314 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~-~~~~---~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS-PILG---KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH-HHHC---HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh-hccc---hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            322  2344788999999999999999999998888776 2111   111223478899999999999999999988888


Q ss_pred             HHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC-ChHHHHHHHHhCCHHHHHHHhccCCHhHHHHH
Q 035507          488 IVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG-NREQIQAVIDAGLIGPLVNLLQNAEFDIKEEA  566 (684)
Q Consensus       488 l~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a  566 (684)
                      +......  ..+ ...++|.+..++.+. ++.+|..++.++..++.. ..+.    +...+.+.+..++.+....+|..|
T Consensus       390 ~~~~~~~--~~~-~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A  461 (588)
T d1b3ua_         390 VNEVIGI--RQL-SQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCH--HHH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHhhcch--hhh-hhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHH
Confidence            7653321  111 224678889999888 999999999999988752 1121    122356778888888999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchH
Q 035507          567 AWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGL  646 (684)
Q Consensus       567 ~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~  646 (684)
                      +++++.++....++.    ....+++.+.+++.+++...+..++.++..+.......                ......+
T Consensus       462 ~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----------------~~~~~il  521 (588)
T d1b3ua_         462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHML  521 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTH
T ss_pred             HHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----------------HHHHHHH
Confidence            999999986444432    23347888999999999999999999999887653221                1123356


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          647 EKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       647 ~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      +.+..+..++.+.|+..|.+.+...+
T Consensus       522 p~ll~~~~D~v~nVR~~a~~~l~~i~  547 (588)
T d1b3ua_         522 PTVLRMAGDPVANVRFNVAKSLQKIG  547 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            77777778888888877777776654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8e-12  Score=144.53  Aligned_cols=363  Identities=11%  Similarity=0.126  Sum_probs=227.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.+.+.+.++++..+..|+.++..++.+........+ ..++|.++..+++++ +.+|..|+|+|+.++.........
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            345666777899999999999999987765321111111 235788889998888 999999999999988621111111


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCC-CchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSG-CRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~-~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      -.-...++.++..+.++++.|++.|+++|.+++..... ....+  ...++.++..+ ...+......+..+++.++...
T Consensus       474 ~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~  550 (888)
T d1qbkb_         474 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF-SKYQHKNLLILYDAIGTLADSV  550 (888)
T ss_dssp             HHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhh
Confidence            12245788899988999999999999999999854322 21111  12455566666 3344455555556666655432


Q ss_pred             --CCCChhhhhchHHHHHHHhcC--CcHHHHHHHHHHHHhhcc---CCChHHHHHHHHhchHHHHH--------Hhc---
Q 035507          409 --PRPLFDQVRPALPALAQLIHS--NDEQVLTDACWALFGLSG---DRNNDKIQAVIEAGVCGRLV--------ELL---  470 (684)
Q Consensus       409 --~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~al~~L~~L~~---~~~~~~~~~~~~~g~l~~L~--------~lL---  470 (684)
                        ..........++|.+......  .+......++.+++.++.   .........+.+. ++..+.        ...   
T Consensus       551 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         551 GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             GGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTT
T ss_pred             hccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhcccc
Confidence              111223345556666655442  222233344445544431   1111222222111 111111        111   


Q ss_pred             --CCCCcccHhHHHHHHHHHHcCChhhHHHHH-hcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 035507          471 --GHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGL  547 (684)
Q Consensus       471 --~~~~~~v~~~al~~L~nl~~~~~~~~~~~i-~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~  547 (684)
                        ...+..+...++.+++.++.+-.......+ ...+++.+...+.+. ++.+|..|..+++.++..........++. +
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~~~l~~-~  707 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPCIAD-F  707 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTGGGHHH-H
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHHHHHHH-H
Confidence              123455667788888888764444444443 456788899999888 99999999999999987555554444443 7


Q ss_pred             HHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--hHHHHHHHHHHHHHHhcccc
Q 035507          548 IGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD--PKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       548 l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~--~~v~~~al~~L~~il~~~~~  622 (684)
                      ++.++..+.+....++..|+|+++.++.....+...++-  .+++.|...+++++  ..+...++.++.++....+.
T Consensus       708 ~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         708 MPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHH
Confidence            888888888888999999999999998755444333322  26778888887643  45889999999998876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-10  Score=137.94  Aligned_cols=409  Identities=11%  Similarity=0.101  Sum_probs=264.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .+..+++.+++.|++.|+.|+..|.+.+..+....+.-....+++.++++|++++ ++||..|+.+|+.++..-++... 
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~-   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV-   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH-
Confidence            3567888999999999999999999988655422221123347899999998888 99999999999999885443321 


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCC-c----hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGC-R----DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~-r----~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                         ...++.|+..+.+++...+..+..+|..+...-+.. .    ........++.+...+....+..++..++.++..+
T Consensus        82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence               235788888888888889999988888776432210 0    00111122344445555666788888999999888


Q ss_pred             ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc-CCCCcccHhHHHH
Q 035507          405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL-GHPSPSVLTPALW  483 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~  483 (684)
                      ....+.........+++.+...+.++++.++..|+.+++.++ ......    .-..+++.++..+ .+.+...+..++.
T Consensus       159 ~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~-~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         159 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV-MSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT-TTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            776544444445678888888899999999999999999998 443221    1123455555544 4556677888999


Q ss_pred             HHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHH----HHHHHh--------------
Q 035507          484 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI----QAVIDA--------------  545 (684)
Q Consensus       484 ~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~----~~l~~~--------------  545 (684)
                      +++.++...+...... -..+++.+...+.+. +..+|..+..++..++...+...    ..++..              
T Consensus       234 ~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            9999987654332211 135788999999888 88999999999998876432211    111100              


Q ss_pred             ------------------CCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHH
Q 035507          546 ------------------GLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT  607 (684)
Q Consensus       546 ------------------g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~  607 (684)
                                        ...+.......+....+|..|+.++..++.... +....+ -..+++.+...+.+.++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~~vr~  389 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVKA  389 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHHH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCchHHHH
Confidence                              001111111223456789999999999987432 322222 345889999999999999999


Q ss_pred             HHHHHHHHHHhcccccccCCCC---CcchhHHHHHHHH--hchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          608 VCLEGLENILKVGEAEKNTDSD---IGDINQFAQLVEE--AEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       608 ~al~~L~~il~~~~~~~~~~~~---~~~~~~~~~~i~~--~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      .++.++..++............   ....+.....+.+  ...++.+.....+.++.++..+..++..+.
T Consensus       390 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            9999999888654322100000   0000000111111  234566666777888888888888776653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=8.6e-11  Score=115.27  Aligned_cols=256  Identities=14%  Similarity=0.151  Sum_probs=197.1

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc
Q 035507          290 SGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR  369 (684)
Q Consensus       290 ~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r  369 (684)
                      ....+.|+++|++++ +.+|..|+.+|..+..           ..+++.|+.+++++++.++..|+.+|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            345678899999888 9999999999998764           13589999999999999999999999998643322 1


Q ss_pred             hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 035507          370 DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDR  449 (684)
Q Consensus       370 ~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~  449 (684)
                      +     ..+..++..+.++++..++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+. + 
T Consensus        85 ~-----~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-~-  153 (276)
T d1oyza_          85 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN-D-  153 (276)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             c-----chHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-h-
Confidence            1     1345666666688899999999999999986542    223457788888888999999999999988766 2 


Q ss_pred             ChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHH
Q 035507          450 NNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIIS  529 (684)
Q Consensus       450 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~  529 (684)
                                ...++.+..++.+.+..++..+..+++.+......         ..+.+...+.+. +..++..+.++++
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~  213 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLS  213 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccc
Confidence                      24567888888888888999888888887765542         344566777777 8999999999988


Q ss_pred             HHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChHHHHH
Q 035507          530 NIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPKIVTV  608 (684)
Q Consensus       530 nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~~~  608 (684)
                      .+..           ...+|.|++.+.+  +.++..|+++|+.+..            .+.++.|..++.. ++.+++..
T Consensus       214 ~~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~  268 (276)
T d1oyza_         214 YRKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITS  268 (276)
T ss_dssp             HTTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHH
T ss_pred             hhhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHH
Confidence            7642           2367888888864  4688999999998742            2367778777765 57889999


Q ss_pred             HHHHHH
Q 035507          609 CLEGLE  614 (684)
Q Consensus       609 al~~L~  614 (684)
                      ++++|.
T Consensus       269 A~~~L~  274 (276)
T d1oyza_         269 AIDKLK  274 (276)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            988874

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.3e-11  Score=135.41  Aligned_cols=399  Identities=14%  Similarity=0.165  Sum_probs=247.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      .++.++..+++.++.+|..|++++.+++....+....-.-..+++.++..+.+++ +.++..|+++|.+++.........
T Consensus       437 li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~-~~V~~~a~~al~~l~~~~~~~l~p  515 (888)
T d1qbkb_         437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEACTELVP  515 (888)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSC-HHHHHHHHHHHHHHHHHHTTSSGG
T ss_pred             hhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            5678888899999999999999999876432211122233467888888888887 899999999999998621111110


Q ss_pred             HHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC-CCchhHhhcCCHHHHHHHhccCC-chHHHHHHHHHHHHhccC
Q 035507          330 VIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS-GCRDLVLSEGALIPLLAQLNEHT-ELSMLRIATTTLSNLCRG  407 (684)
Q Consensus       330 i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~-~~r~~i~~~g~l~~Ll~~L~~~~-~~~v~~~a~~~L~nL~~~  407 (684)
                      .. ..+++.++..+.......+..+..+++.++.... .....-.....++.++....... +......+..+++.++..
T Consensus       516 ~~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~  594 (888)
T d1qbkb_         516 YL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATA  594 (888)
T ss_dssp             GH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            01 2346677777787777777777778877763211 11111111123344444443211 122233445566665544


Q ss_pred             CCCCChhhhhchHHHHHHHhc-----------------CCcHHHHHHHHHHHHhhccCCChHHH-HHHHHhchHHHHHHh
Q 035507          408 KPRPLFDQVRPALPALAQLIH-----------------SNDEQVLTDACWALFGLSGDRNNDKI-QAVIEAGVCGRLVEL  469 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~-----------------~~d~~v~~~al~~L~~L~~~~~~~~~-~~~~~~g~l~~L~~l  469 (684)
                      .............+.+..++.                 ..+.++...++.+++.++ ..-.... ..+....+++.+...
T Consensus       595 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~~l~~~~~~~~~~~~l~~~l~~~  673 (888)
T d1qbkb_         595 LQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLA-EGLGGNIEQLVARSNILTLMYQC  673 (888)
T ss_dssp             STTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHH-HHHTTTTHHHHHTSCHHHHHHHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHH-HHhhhhhhhhhhHhhHHHHHHHH
Confidence            322222222222332222221                 235667777777777666 3222222 333344688889999


Q ss_pred             cCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHH
Q 035507          470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIG  549 (684)
Q Consensus       470 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~  549 (684)
                      +.+.++.++..|..+++.++..........++ .+++.+...+.++ ...++..|+|+++.|+....+.....+. .+++
T Consensus       674 l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~  750 (888)
T d1qbkb_         674 MQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLH  750 (888)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHH
Confidence            99999999999999999998766544433332 3677788888877 8899999999999998744444443333 3788


Q ss_pred             HHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CChHHHHHHHHHHHHHHhcccccccC
Q 035507          550 PLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQC-ADPKIVTVCLEGLENILKVGEAEKNT  626 (684)
Q Consensus       550 ~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~-~~~~v~~~al~~L~~il~~~~~~~~~  626 (684)
                      .|+.+++++  +..++..++.+++.++... ++...... ..+++.++..+.. .|.+-...+..++..++...+.... 
T Consensus       751 ~L~~il~~~~~~~~v~~n~~~~lgrl~~~~-p~~~~~~l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~-  827 (888)
T d1qbkb_         751 QLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEVAPML-QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI-  827 (888)
T ss_dssp             HHHHHHTCTTCCHHHHHHHHHHHHHHHHHC-HHHHGGGG-GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG-
T ss_pred             HHHHHHcCCCccHHHHHHHHHHHHHHHHHC-HHHHHhhH-HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH-
Confidence            999999875  4568899999999998743 44332211 2367888887765 4666678889999998887654321 


Q ss_pred             CCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          627 DSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       627 ~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                             ..+...      ++.+... ..+.+++.+....++..|
T Consensus       828 -------~~l~~~------~~~i~~~-~~~~~~~~~~~~~~l~~~  858 (888)
T d1qbkb_         828 -------QDFIFF------CDAVASW-INPKDDLRDMFCKILHGF  858 (888)
T ss_dssp             -------GGHHHH------HHHHTTC-SSCCHHHHHHHHHHHHHH
T ss_pred             -------HHHHHH------HHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence                   112111      1122221 234577877777777665

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2.8e-09  Score=104.05  Aligned_cols=253  Identities=14%  Similarity=0.067  Sum_probs=188.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKV  329 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  329 (684)
                      ..+.+++.|.++|+.++..|+..|..+-.           ..+++.|++++++++ +.+|..|+++|+.+...... ...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~-~~~   86 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-EDN   86 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-HHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-ccc
Confidence            55789999999999999999999988532           125799999999988 89999999999998753222 111


Q ss_pred             HHhcCChHHHHH-hcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          330 VIEHDAVPIFVK-LLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       330 i~~~g~i~~Li~-lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                           .++.+.. +++++++.++..++.+|++++...+...     ...++.+...+ .+.+..++..++.+++....  
T Consensus        87 -----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~-----~~~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          87 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC----
T ss_pred             -----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh-----HHHHHHHHHHh-cCcchHHHHHHHHHHhhcch--
Confidence                 1333444 5677999999999999999986543321     12345555555 66778888888888876543  


Q ss_pred             CCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHH
Q 035507          409 PRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNI  488 (684)
Q Consensus       409 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  488 (684)
                              ...++.+..++...+..+...+..++..+. ....         ...+.+...+.+.+..++..+..+++.+
T Consensus       154 --------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 --------KATIPLLINLLKDPNGDVRNWAAFAININK-YDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHT-CCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             --------HHHHHHHHHhcccccchhhhhHHHHHHhhh-cccc---------ccchhhhhhhhhhhhhhhhhhccccchh
Confidence                    245778888899999999999999888877 4432         2445677788888999999999988776


Q ss_pred             HcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccC-CHhHHHHHH
Q 035507          489 VMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNA-EFDIKEEAA  567 (684)
Q Consensus       489 ~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~-~~~v~~~a~  567 (684)
                      ..           ..+++.|+..+.++   .+|..|+++|+.+..           .+.+|.|..++... +.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHH
Confidence            32           23678888888654   588999999998842           24788899888764 788999988


Q ss_pred             HHHH
Q 035507          568 WAIS  571 (684)
Q Consensus       568 ~aL~  571 (684)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8763

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=9.6e-10  Score=115.55  Aligned_cols=363  Identities=13%  Similarity=0.070  Sum_probs=231.6

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCcHHHH-----------HHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 035507          249 EILPMMVAGVWSD--DNNLQLEATTQFQKLLSIESMPIEEV-----------IESGVVPRFVEFLMREDYPQLQFQAAWA  315 (684)
Q Consensus       249 ~~l~~lv~~L~s~--~~~~~~~a~~~L~~l~s~~~~~~~~i-----------i~~g~i~~Lv~lL~~~~~~~v~~~A~~~  315 (684)
                      +.+..+...+.+.  +..+|..|+..|++.+....+.....           ....+.+.+++.+.+++ +. +..++.+
T Consensus        34 ~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~  111 (458)
T d1ibrb_          34 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQC  111 (458)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHH
Confidence            3456666766543  47889999999999887654222111           12345556777776665 33 3345556


Q ss_pred             HHHHhcCCchhHHHHHhcCChHHHHHhcCC--CChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc-CCchH
Q 035507          316 LTNIASGTSENTKVVIEHDAVPIFVKLLAS--PSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE-HTELS  392 (684)
Q Consensus       316 L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~--~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~-~~~~~  392 (684)
                      +..++..... .  -.-.+.++.++..+.+  .+..++..++.+++.++.........-.....++.++..+.. ..+..
T Consensus       112 ~~~i~~~~~~-~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         112 VAGIACAEIP-V--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHHGG-G--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHHhCC-c--ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            6655541000 0  0113568888887765  456788899999998875433211111122345666666643 34678


Q ss_pred             HHHHHHHHHHHhccCCC--CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc
Q 035507          393 MLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL  470 (684)
Q Consensus       393 v~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL  470 (684)
                      ++..++.++.++.....  ...........+.+..++.+++++++..++.++..++ ..........+.....+.+...+
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~-~~~~~~~~~~l~~~~~~~~~~~~  267 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM-SLYYQYMETYMGPALFAITIEAM  267 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH-HHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999987652  1222333556777888889999999999999999988 44433322223333445566667


Q ss_pred             CCCCcccHhHHHHHHHHHHcCChhhHHH--------------------HHhcCChHHHHHHhccC------CChhHHHHH
Q 035507          471 GHPSPSVLTPALWTVGNIVMGDDFQTQC--------------------IINHGAVPCLLALLIHN------HKNSIKKEV  524 (684)
Q Consensus       471 ~~~~~~v~~~al~~L~nl~~~~~~~~~~--------------------~i~~g~l~~L~~lL~~~------~~~~v~~~a  524 (684)
                      .+.++.++..|+..+..++.........                    .....+.+.+...+.+.      .+..++..|
T Consensus       268 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a  347 (458)
T d1ibrb_         268 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  347 (458)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHH
Confidence            7788888999998888886432111100                    01112344555554321      134688999


Q ss_pred             HHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChH
Q 035507          525 SWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPK  604 (684)
Q Consensus       525 ~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~  604 (684)
                      ..++..++...++..   . ..+++.+.+.+.++++.+|..|+.+++.++.+...+..... -..+++.+...++++++.
T Consensus       348 ~~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~  422 (458)
T d1ibrb_         348 GVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVV  422 (458)
T ss_dssp             HHHHHHHHHHTTTTH---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHhccHhh---h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHH
Confidence            999998876322222   1 12567788888889999999999999999875433322111 234688999999999999


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 035507          605 IVTVCLEGLENILKVGEA  622 (684)
Q Consensus       605 v~~~al~~L~~il~~~~~  622 (684)
                      |+..|+++|.++......
T Consensus       423 VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         423 VRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            999999999999876543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.9e-09  Score=108.32  Aligned_cols=389  Identities=11%  Similarity=0.075  Sum_probs=249.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVV  330 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~i  330 (684)
                      -.+++.+.|+|.+.+..|-..|..+...+.        .+.+..|...+.+++ ...+|..|+-.|.+............
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            345677779999999999999988765321        134667777776543 36899999989988876433222111


Q ss_pred             -----------HhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc-CCchHHHHHHH
Q 035507          331 -----------IEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE-HTELSMLRIAT  398 (684)
Q Consensus       331 -----------~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~-~~~~~v~~~a~  398 (684)
                                 ....+.+.++..+.++++. +..++.+++.++......   -.-.+.++.++..+.+ ..+...+..++
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l  150 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTL  150 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHH
Confidence                       1122345566766665543 334555555554221000   0012356777777743 34566777888


Q ss_pred             HHHHHhccCC-CCCChhhhhchHHHHHHHhcCC--cHHHHHHHHHHHHhhccCCChHHHH-HHHHhchHHHHHHhcCCCC
Q 035507          399 TTLSNLCRGK-PRPLFDQVRPALPALAQLIHSN--DEQVLTDACWALFGLSGDRNNDKIQ-AVIEAGVCGRLVELLGHPS  474 (684)
Q Consensus       399 ~~L~nL~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~al~~L~~L~~~~~~~~~~-~~~~~g~l~~L~~lL~~~~  474 (684)
                      .++..++... +.........+++.+...+.++  +..++..++.++..+. ........ ......+.+.+..++.+++
T Consensus       151 ~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         151 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL-EFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT-TTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            9998887654 3333344567788888888754  5789999999999988 54433221 2233346777888889999


Q ss_pred             cccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHH---------------
Q 035507          475 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQI---------------  539 (684)
Q Consensus       475 ~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~---------------  539 (684)
                      +.++..++.++..++...+......+.....+.+...+.+. ++.++..|+..+..++.......               
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  308 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  308 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHH
Confidence            99999999999999876654433222333344555556666 88899999998888864211111               


Q ss_pred             -----HHHHHhCCHHHHHHHhcc-------CCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHH
Q 035507          540 -----QAVIDAGLIGPLVNLLQN-------AEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVT  607 (684)
Q Consensus       540 -----~~l~~~g~l~~Li~ll~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~  607 (684)
                           .......++|.+...+..       .+..++..|..++..++.....+....     +++.+.+.+.++++.++.
T Consensus       309 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~  383 (458)
T d1ibrb_         309 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRD  383 (458)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHH
Confidence                 011112345556665532       234578888888888876443333333     456778888999999999


Q ss_pred             HHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 035507          608 VCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETYW  672 (684)
Q Consensus       608 ~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~f  672 (684)
                      .++.++..+........-.           ..+  ...++.|....+++++.|+..|...+.++.
T Consensus       384 aal~~l~~i~~~~~~~~~~-----------~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         384 AAVMAFGCILEGPEPSQLK-----------PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHHHTSSSSCTTTTC-----------TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHhHHH-----------HHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999887543221100           111  224566777788999999999999998763

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=2e-08  Score=114.18  Aligned_cols=357  Identities=12%  Similarity=0.171  Sum_probs=216.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVI  331 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~  331 (684)
                      +.+...+.+.++..+..|+.++..+.....+....-.-..+++.++..+.+++ +.+|..|+|+++.++....   ..+.
T Consensus       372 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~---~~~~  447 (861)
T d2bpta1         372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVA---ESID  447 (861)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHG---GGSC
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhc---hhhh
Confidence            33444556888999999999998877655422222223457889999999888 8999999999999886211   1111


Q ss_pred             hcCChHHHHHhc---CCCChHHHHHHHHHHHHhhCCCCCC-chhHh--hcCCHHHHHHHhc-cCCchHHHHHHHHHHHHh
Q 035507          332 EHDAVPIFVKLL---ASPSDDVREQAVWALGNVAADSSGC-RDLVL--SEGALIPLLAQLN-EHTELSMLRIATTTLSNL  404 (684)
Q Consensus       332 ~~g~i~~Li~lL---~~~~~~v~~~a~~~L~nLa~~~~~~-r~~i~--~~g~l~~Ll~~L~-~~~~~~v~~~a~~~L~nL  404 (684)
                      ....++.++..+   ...++.++..+++++.+++...... .....  ....+..++.... ...+..++..+..++..+
T Consensus       448 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~  527 (861)
T d2bpta1         448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM  527 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            223344444433   2356788888999888886322111 01110  1122344444443 334567788888888888


Q ss_pred             ccCCCCCChhhhhchHHHHHHHh----cCCc-----------HHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHh
Q 035507          405 CRGKPRPLFDQVRPALPALAQLI----HSND-----------EQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVEL  469 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL----~~~d-----------~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~l  469 (684)
                      ....+.........+.+.+...+    ....           ..++..++.++..+. ........... ..+++.+...
T Consensus       528 i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~-~~l~~~l~~~  605 (861)
T d2bpta1         528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI-RKSPSSVEPVA-DMLMGLFFRL  605 (861)
T ss_dssp             HHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH-HHCGGGTGGGH-HHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHH-hcchhhHHHHH-HHHHHHHhhh
Confidence            77654443333344444443333    2111           223444445555444 22111111111 1345666666


Q ss_pred             cCC-CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCH
Q 035507          470 LGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLI  548 (684)
Q Consensus       470 L~~-~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l  548 (684)
                      +.. ++..++..++.+++.++..........++ .++|.+...+.+. ++.++..|+.+++.++....+....... .++
T Consensus       606 l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i~  682 (861)
T d2bpta1         606 LEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AMM  682 (861)
T ss_dssp             HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HHH
T ss_pred             cccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HHH
Confidence            644 45678889999999988655444433332 4788999999888 8899999999999998754444444443 378


Q ss_pred             HHHHHHhccC--CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC----C-------hHHHHHHHHHHHH
Q 035507          549 GPLVNLLQNA--EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCA----D-------PKIVTVCLEGLEN  615 (684)
Q Consensus       549 ~~Li~ll~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~----~-------~~v~~~al~~L~~  615 (684)
                      +.|++.+.+.  +..++..++.+++.++........+++-.  +++.+...+...    +       ..++..++.++..
T Consensus       683 ~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  760 (861)
T d2bpta1         683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVG  760 (861)
T ss_dssp             HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            8889988765  57889999999999986433344444322  455555554432    1       2356777777777


Q ss_pred             HHhc
Q 035507          616 ILKV  619 (684)
Q Consensus       616 il~~  619 (684)
                      ++..
T Consensus       761 i~~~  764 (861)
T d2bpta1         761 IVAG  764 (861)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7663

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.3e-08  Score=118.73  Aligned_cols=361  Identities=12%  Similarity=0.132  Sum_probs=225.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-----CcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCc
Q 035507          250 ILPMMVAGVWSDDNNLQLEATTQFQKLLSIES-----MPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTS  324 (684)
Q Consensus       250 ~l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~-----~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~  324 (684)
                      .++.++..+.+++...+..+..+|+.+...-+     ......+-..+++.+...+....++.++..|+.+|..+.....
T Consensus        84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g  163 (1207)
T d1u6gc_          84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG  163 (1207)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            34455555555555555555555555443211     1111112223445555555555558899999999998876222


Q ss_pred             hhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          325 ENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       325 ~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      ...... ...+++.++..+.++++.+|..|+.+|+.++...+..    .-...+..++..+..+.+...++.++.+++.+
T Consensus       164 ~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l  238 (1207)
T d1u6gc_         164 GLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI  238 (1207)
T ss_dssp             SSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             HhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            111100 1135677888889999999999999999998655331    11234677787776666666777888889988


Q ss_pred             ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhc--------------
Q 035507          405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELL--------------  470 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL--------------  470 (684)
                      ++..+.........++|.+...+.+++++++..++.++..++ ...+....... ..+++.+...+              
T Consensus       239 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~-~~~~~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~  316 (1207)
T d1u6gc_         239 SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV-RRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  316 (1207)
T ss_dssp             HHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH-HCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HhChhhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHH
Confidence            887654444456788999999999999999999999888877 33222111111 01222222221              


Q ss_pred             -----------------------CCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHH
Q 035507          471 -----------------------GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWI  527 (684)
Q Consensus       471 -----------------------~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~  527 (684)
                                             .+..+.+|..|+.++..+....++...... ..+++.++..+.+. ++.+|..+..+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~  394 (1207)
T d1u6gc_         317 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  394 (1207)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             HhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHH
Confidence                                   223467889999999999877765554443 36889999999888 88999999998


Q ss_pred             HHHHhcCChH----------------HHHHH--HHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 035507          528 ISNIACGNRE----------------QIQAV--IDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEG  589 (684)
Q Consensus       528 L~nl~~~~~~----------------~~~~l--~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g  589 (684)
                      +..+......                ....+  .-..+++.+.+.+.+.+..++..+..++..+..........++.  .
T Consensus       395 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~  472 (1207)
T d1u6gc_         395 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP--V  472 (1207)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH--H
T ss_pred             HHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhH--h
Confidence            8877531000                00001  11235677778888889999999999998887532211111111  1


Q ss_pred             ChHHHHhhccCC--ChHHHHHHHHHHHHHHhccc
Q 035507          590 CIKPLCDLLQCA--DPKIVTVCLEGLENILKVGE  621 (684)
Q Consensus       590 ~l~~L~~lL~~~--~~~v~~~al~~L~~il~~~~  621 (684)
                      +++.+...+...  ...++..++..+..++....
T Consensus       473 ~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~  506 (1207)
T d1u6gc_         473 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS  506 (1207)
T ss_dssp             HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcc
Confidence            355566666543  44677788888888877543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.6e-07  Score=106.56  Aligned_cols=387  Identities=12%  Similarity=0.073  Sum_probs=242.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHhcCCchhHHHH-
Q 035507          253 MMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMRED-YPQLQFQAAWALTNIASGTSENTKVV-  330 (684)
Q Consensus       253 ~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~i-  330 (684)
                      .|...+.|.|++++..|-..|.++...+.        .+.+..+.+.+.+.+ +..+|..|+-.|.|............ 
T Consensus         9 ~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1           9 LLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            34455678999999999999988654321        235677888886543 36899999999988775332211110 


Q ss_pred             -------H----hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCC-CCCchhHhhcCCHHHHHHHhccCCchHHHHHHH
Q 035507          331 -------I----EHDAVPIFVKLLASPSDDVREQAVWALGNVAADS-SGCRDLVLSEGALIPLLAQLNEHTELSMLRIAT  398 (684)
Q Consensus       331 -------~----~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~-~~~r~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~  398 (684)
                             +    ...+-..++..+.++++.+|..++.+++.++... |..+  -  ...++.|+..+....+..++..++
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~~~al  156 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVKRASL  156 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHHHHHH
Confidence                   0    0112355677778889999999999999997432 1100  0  013566677775555667788899


Q ss_pred             HHHHHhccCCCCCC---hhhhhchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHH-HHHHhchHHHHHHhcCC
Q 035507          399 TTLSNLCRGKPRPL---FDQVRPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQ-AVIEAGVCGRLVELLGH  472 (684)
Q Consensus       399 ~~L~nL~~~~~~~~---~~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~-~~~~~g~l~~L~~lL~~  472 (684)
                      .++..++.......   ......+++.+...+.  ..+..++..++.++.++. ........ ......+++.+...+.+
T Consensus       157 ~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (861)
T d2bpta1         157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL-IFIKNNMEREGERNYLMQVVCEATQA  235 (861)
T ss_dssp             HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG-GGCHHHHTSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-HHHhHhHHhhhhhhHHHHhHHHHhcC
Confidence            99999987653222   2223445555555444  345889999999999887 43332221 12223467788888999


Q ss_pred             CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH----------
Q 035507          473 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV----------  542 (684)
Q Consensus       473 ~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l----------  542 (684)
                      +++.++..++.++..++...+......+..-+...+.....+. ++.++..+...+..++..........          
T Consensus       236 ~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  314 (861)
T d2bpta1         236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQS  314 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            9999999999999999875554333322222223334444555 88999999888887764211111111          


Q ss_pred             ------HHhCCHHHHHHHhccC-------CHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHH
Q 035507          543 ------IDAGLIGPLVNLLQNA-------EFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVC  609 (684)
Q Consensus       543 ------~~~g~l~~Li~ll~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~a  609 (684)
                            .-..++|.+...+...       +...+..+..++..++.....+....     ..+.+...+.+.++..+..+
T Consensus       315 ~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a  389 (861)
T d2bpta1         315 YNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNREAA  389 (861)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHHHHH
Confidence                  1112466666666432       33566777777777664222222222     23455666778899999999


Q ss_pred             HHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 035507          610 LEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSVKILETY  671 (684)
Q Consensus       610 l~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~~ii~~~  671 (684)
                      ..++..+.......           .....+.  ..++.+..+..++++.|+..|...+.++
T Consensus       390 ~~~l~~i~~~~~~~-----------~~~~~l~--~~l~~l~~~l~d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         390 VMAFGSIMDGPDKV-----------QRTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             HHHHHHTSSSSCHH-----------HHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcchh-----------hHHHHHH--HHHHHHHHHhcCcchhhhhHHHHHHHHH
Confidence            99988877543321           1122222  2466777778889999999998887665

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=8.2e-07  Score=100.77  Aligned_cols=361  Identities=13%  Similarity=0.095  Sum_probs=233.5

Q ss_pred             ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCcHH-----------HHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 035507          249 EILPMMVAGVWS--DDNNLQLEATTQFQKLLSIESMPIE-----------EVIESGVVPRFVEFLMREDYPQLQFQAAWA  315 (684)
Q Consensus       249 ~~l~~lv~~L~s--~~~~~~~~a~~~L~~l~s~~~~~~~-----------~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~  315 (684)
                      +.+..+.+.+.+  .+..+|..|+..|.+.+........           .-....+...+++.+.+++  .++..++.+
T Consensus        35 ~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~  112 (876)
T d1qgra_          35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQC  112 (876)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHH
Confidence            455666666654  3478899999999998865431111           1122335567788887765  345567888


Q ss_pred             HHHHhcCCchhHHHHHhcCChHHHHHhcCCC--ChHHHHHHHHHHHHhhCCCCCCchhHh--hcCCHHHHHHHhcc-CCc
Q 035507          316 LTNIASGTSENTKVVIEHDAVPIFVKLLASP--SDDVREQAVWALGNVAADSSGCRDLVL--SEGALIPLLAQLNE-HTE  390 (684)
Q Consensus       316 L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~--~~~v~~~a~~~L~nLa~~~~~~r~~i~--~~g~l~~Ll~~L~~-~~~  390 (684)
                      ++.++...- ...  --.+.++.|++.+.++  ...+++.++.+|+.++.+-..  +.+.  ....++.++..+.. ..+
T Consensus       113 i~~i~~~~~-p~~--~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~  187 (876)
T d1qgra_         113 VAGIACAEI-PVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPS  187 (876)
T ss_dssp             HHHHHHHHG-GGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSC
T ss_pred             HHHHHHHHC-Ccc--ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCcc
Confidence            888876210 000  0135788888888664  467888999999999854321  1111  12345666676643 345


Q ss_pred             hHHHHHHHHHHHHhccCCC--CCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHH
Q 035507          391 LSMLRIATTTLSNLCRGKP--RPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVE  468 (684)
Q Consensus       391 ~~v~~~a~~~L~nL~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~  468 (684)
                      ..++..++.++.+......  .........+++.+...+.+++++++..++.++..++ ....+.........+.+.+..
T Consensus       188 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~-~~~~~~~~~~~~~~l~~~~~~  266 (876)
T d1qgra_         188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM-SLYYQYMETYMGPALFAITIE  266 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH-HHSGGGCHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Confidence            6788888888888766541  1112222446677778888999999999999999988 555544444455556677777


Q ss_pred             hcCCCCcccHhHHHHHHHHHHcCChhhHHH--------------------HHhcCChHHHHHHhccC------CChhHHH
Q 035507          469 LLGHPSPSVLTPALWTVGNIVMGDDFQTQC--------------------IINHGAVPCLLALLIHN------HKNSIKK  522 (684)
Q Consensus       469 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~--------------------~i~~g~l~~L~~lL~~~------~~~~v~~  522 (684)
                      .+.+..+.++..++..+..++.........                    .....+++.+...+...      .+..++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  346 (876)
T d1qgra_         267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK  346 (876)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHH
Confidence            788888888888888877776422211100                    00112334444444321      1335888


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 035507          523 EVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCAD  602 (684)
Q Consensus       523 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~  602 (684)
                      .|..++..++...+...   +. .+++.+.+.+.+.+...+..++.+++.+..+........... .+++.+...+.+++
T Consensus       347 ~a~~~l~~l~~~~~~~~---~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~  421 (876)
T d1qgra_         347 AAGVCLMLLATCCEDDI---VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPS  421 (876)
T ss_dssp             HHHHHHHHHHHHHGGGG---HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHhhhhh---hh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCc
Confidence            88888887765322211   11 245666677778899999999999999988666555443322 36888899999999


Q ss_pred             hHHHHHHHHHHHHHHhcccc
Q 035507          603 PKIVTVCLEGLENILKVGEA  622 (684)
Q Consensus       603 ~~v~~~al~~L~~il~~~~~  622 (684)
                      +.++..+++++..+++....
T Consensus       422 ~~vr~~a~~~l~~~~~~~~~  441 (876)
T d1qgra_         422 VVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHCGG
T ss_pred             cHHHHHHHHHHHHHHHHcch
Confidence            99999999999999987544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=6.9e-07  Score=101.42  Aligned_cols=318  Identities=14%  Similarity=0.151  Sum_probs=194.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 035507          251 LPMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVIESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVV  330 (684)
Q Consensus       251 l~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i  330 (684)
                      ++.+.+.+.++++..+..++..+..+..........-.-..+++.+...+.+++ +.++..|+|+++.++...+...   
T Consensus       368 ~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~---  443 (876)
T d1qgra_         368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAA---  443 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGT---
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHHHHcchhh---
Confidence            445566677888999999998888876654322222233457888999998887 9999999999999987332211   


Q ss_pred             HhcC----ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC----C-------CchhHh--hcCCHHHHHHHhcc--CCch
Q 035507          331 IEHD----AVPIFVKLLASPSDDVREQAVWALGNVAADSS----G-------CRDLVL--SEGALIPLLAQLNE--HTEL  391 (684)
Q Consensus       331 ~~~g----~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~----~-------~r~~i~--~~g~l~~Ll~~L~~--~~~~  391 (684)
                      ....    .++.+...+. +++.++..+++++.+++....    .       ....+.  -...+..++..+..  ....
T Consensus       444 ~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~  522 (876)
T d1qgra_         444 INDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQN  522 (876)
T ss_dssp             SSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCST
T ss_pred             hhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence            1122    2444454444 478899999999999873210    0       000000  01123445555532  2345


Q ss_pred             HHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHh----cCC-------c----HHHHHHHHHHHHhhccCCChHHHHH
Q 035507          392 SMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLI----HSN-------D----EQVLTDACWALFGLSGDRNNDKIQA  456 (684)
Q Consensus       392 ~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL----~~~-------d----~~v~~~al~~L~~L~~~~~~~~~~~  456 (684)
                      .++..+..++..+....+..........++.+...+    ...       +    ...+..++.++..+. .........
T Consensus       523 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~  601 (876)
T d1qgra_         523 NLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVL-RKVQHQDAL  601 (876)
T ss_dssp             THHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHH-TTSCHHHHH
T ss_pred             hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHH-HHcchhhhh
Confidence            677778888888777665444444444444444333    211       1    123445556666665 322222111


Q ss_pred             HHHhchHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC
Q 035507          457 VIEAGVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG  534 (684)
Q Consensus       457 ~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  534 (684)
                      -....+++.+..++..  ++..++..++.+++.++..........+ ..++|.+...+.+..++.++..|+.+++.++..
T Consensus       602 ~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l-~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~  680 (876)
T d1qgra_         602 QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA  680 (876)
T ss_dssp             TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            1222466777777754  4567888999999988754433222111 136788888887764678999999999998764


Q ss_pred             ChHHHHHHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhcC
Q 035507          535 NREQIQAVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASSR  576 (684)
Q Consensus       535 ~~~~~~~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~~  576 (684)
                      .+.......+ .+++.++..+++.  +..++..++++++.++..
T Consensus       681 ~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~  723 (876)
T d1qgra_         681 LQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALA  723 (876)
T ss_dssp             HGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred             hHHhhhhhHH-HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH
Confidence            4444444333 4788899999765  578999999999998753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=1.3e-05  Score=81.16  Aligned_cols=319  Identities=12%  Similarity=0.130  Sum_probs=200.0

Q ss_pred             ChHHHHHhcCC-CChHHHHHHHHHHHHhhCCCCCCchhH---hhcC-CH-HHHHHHhccCCchHHHHHHHHHHHHhccCC
Q 035507          335 AVPIFVKLLAS-PSDDVREQAVWALGNVAADSSGCRDLV---LSEG-AL-IPLLAQLNEHTELSMLRIATTTLSNLCRGK  408 (684)
Q Consensus       335 ~i~~Li~lL~~-~~~~v~~~a~~~L~nLa~~~~~~r~~i---~~~g-~l-~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~  408 (684)
                      ++..++.+|.. +.+++.+.++..+.-+..+.+.....+   .... .. .++...+ ...+.-....++..++.++...
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l-~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhc-cCchhHHHHHHHHHHHHHHhcc
Confidence            56777777765 667777777777777776654321211   1111 12 2333333 5556666667777777777664


Q ss_pred             CCCCh--hhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHH--hchHHHHHHhcCC----C-------
Q 035507          409 PRPLF--DQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIE--AGVCGRLVELLGH----P-------  473 (684)
Q Consensus       409 ~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~--~g~l~~L~~lL~~----~-------  473 (684)
                      .....  .........+..+....+.+...-++.++..+.  ..+..+..+..  ...++.++.+|..    .       
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~ll--r~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~  231 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELA--VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  231 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHH--TSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHh--cCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhc
Confidence            32211  112233334444556778888888888998888  45556665543  3445555555532    1       


Q ss_pred             ------CcccHhHHHHHHHHHHcCChhhHHHHHhc--CChHHHHHHhccCCChhHHHHHHHHHHHHhcCCh-----HHHH
Q 035507          474 ------SPSVLTPALWTVGNIVMGDDFQTQCIINH--GAVPCLLALLIHNHKNSIKKEVSWIISNIACGNR-----EQIQ  540 (684)
Q Consensus       474 ------~~~v~~~al~~L~nl~~~~~~~~~~~i~~--g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-----~~~~  540 (684)
                            ...+...++.++.-++. ++.....+...  +.++.++.++......++.+-+..++.|+.....     ....
T Consensus       232 ~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~  310 (477)
T d1ho8a_         232 TNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  310 (477)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence                  23567889999998886 44455555554  3588889988766588899999999999986321     1234


Q ss_pred             HHHHhCCHHHHHHHhccC--CHhHHHHHHHHHHHhhc----CC-----------------CHH---------HHHHHHHC
Q 035507          541 AVIDAGLIGPLVNLLQNA--EFDIKEEAAWAISNASS----RG-----------------THD---------QIKYLVTE  588 (684)
Q Consensus       541 ~l~~~g~l~~Li~ll~~~--~~~v~~~a~~aL~nl~~----~~-----------------~~~---------~~~~l~~~  588 (684)
                      .++..++++.+-.+....  |+++....- .|.....    .-                 +|-         +...|-+.
T Consensus       311 ~~v~~~~l~~l~~L~~r~~~Dedl~edl~-~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         311 LLLLGNALPTVQSLSERKYSDEELRQDIS-NLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHHCHHHHHHHHHSSCCSSHHHHHHHH-HHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHcchhHHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            455666666655444443  676654322 2222221    00                 111         11122212


Q ss_pred             --CChHHHHhhcc----------CCChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCC
Q 035507          589 --GCIKPLCDLLQ----------CADPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHD  656 (684)
Q Consensus       589 --g~l~~L~~lL~----------~~~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~  656 (684)
                        .+++.|.++|+          +.|+.+...|+.=+..+++.-+..             ...+++.|+-+.+..|..|+
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-------------r~il~~lg~K~~vM~Lm~h~  456 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNHS  456 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSCS
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcCC
Confidence              24888888885          347888889999899999886653             46788999999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 035507          657 NNEIHEKSVKILETY  671 (684)
Q Consensus       657 ~~~i~~~a~~ii~~~  671 (684)
                      |++|+..|...+++.
T Consensus       457 d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         457 DSRVKYEALKATQAI  471 (477)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988875

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=1.2e-05  Score=81.23  Aligned_cols=307  Identities=15%  Similarity=0.110  Sum_probs=189.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 035507          252 PMMVAGVWSDDNNLQLEATTQFQKLLSIESMPIEEVI-ESGVVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVV  330 (684)
Q Consensus       252 ~~lv~~L~s~~~~~~~~a~~~L~~l~s~~~~~~~~ii-~~g~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i  330 (684)
                      +.+...+.+++.-....+...+..+++.........- .......+-.+...++ ...+..|+.++..+.. .++.|..+
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~f  202 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDVI  202 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHHH
Confidence            3445556666666777777777777776554333111 1112233333334455 7888889999999998 78888887


Q ss_pred             Hhc--CChHHHHHhcCC-----------------CChHHHHHHHHHHHHhhCCCCCCchhHhhc--CCHHHHHHHhccCC
Q 035507          331 IEH--DAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAADSSGCRDLVLSE--GALIPLLAQLNEHT  389 (684)
Q Consensus       331 ~~~--g~i~~Li~lL~~-----------------~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~--g~l~~Ll~~L~~~~  389 (684)
                      ...  ..++.|+..|..                 ....++.+++.+++-++-+... ...+...  +.++.++..+....
T Consensus       203 w~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~l~~~~~~~i~~l~~i~~~s~  281 (477)
T d1ho8a_         203 WLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF-ANELVQKYLSDFLDLLKLVKITI  281 (477)
T ss_dssp             HTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH-HHHHHTTSHHHHHHHHHHHHHCC
T ss_pred             HHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHH-HHHHHHhhhHHHHHHHHHHHhhh
Confidence            643  346666665532                 1357889999999999865433 3333333  34788888888888


Q ss_pred             chHHHHHHHHHHHHhccCCCCCCh------hhhhchHHHHHHHhc--CCcHHHHHHHHHHHHhhccCCChHHHHHHH--H
Q 035507          390 ELSMLRIATTTLSNLCRGKPRPLF------DQVRPALPALAQLIH--SNDEQVLTDACWALFGLSGDRNNDKIQAVI--E  459 (684)
Q Consensus       390 ~~~v~~~a~~~L~nL~~~~~~~~~------~~~~~~l~~L~~lL~--~~d~~v~~~al~~L~~L~~~~~~~~~~~~~--~  459 (684)
                      .+.+.+.++.++.|++........      ....++++.+..+..  -.|+++..+.-. |.... .   +..+.+.  +
T Consensus       282 KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~-L~~~L-~---~~~k~lTsfd  356 (477)
T d1ho8a_         282 KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISN-LKEIL-E---NEYQELTSFD  356 (477)
T ss_dssp             SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHH-HHHHH-H---HHHHTCCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHH-HHHHH-H---HHHHhcCcHH
Confidence            999999999999999986522211      122344444433333  246666555432 22221 0   1111000  0


Q ss_pred             hchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhc----------cCCChhHHHHHHHHHH
Q 035507          460 AGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----------HNHKNSIKKEVSWIIS  529 (684)
Q Consensus       460 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~----------~~~~~~v~~~a~~~L~  529 (684)
                      .=.-+..-..|.. +|.-+.+.. .--|.....+...+      ++..|+++|.          +. ++.+..-||.=++
T Consensus       357 ~Y~~Ev~Sg~L~W-SP~H~se~F-W~EN~~kf~e~~~~------llk~L~~lL~~~~~~~~~~~s~-D~~~lAVAc~DiG  427 (477)
T d1ho8a_         357 EYVAELDSKLLCW-SPPHVDNGF-WSDNIDEFKKDNYK------IFRQLIELLQAKVRNGDVNAKQ-EKIIIQVALNDIT  427 (477)
T ss_dssp             HHHHHHHHTCCCC-CGGGGCHHH-HHHHSGGGSSGGGH------HHHHHHHHHHHHHHTTCCCSHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCC-CCCcCChhH-HHHHHHhhcccchH------HHHHHHHHHhhcccccccccCC-CcceeehhhhhHH
Confidence            0001111122322 222222333 33344443333332      5678888885          23 6778888999999


Q ss_pred             HHhcCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          530 NIACGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       530 nl~~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                      .++...|..+..+-+.|+=..++++|.++|++||.+|+.|+..+..
T Consensus       428 efvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         428 HVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999888888888888998999999999999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.14  E-value=7.6e-07  Score=73.35  Aligned_cols=109  Identities=19%  Similarity=0.220  Sum_probs=89.4

Q ss_pred             cCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHH
Q 035507          470 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAVIDAGLIG  549 (684)
Q Consensus       470 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~  549 (684)
                      |+++++.+|..|+++|+.+.  .          ..++.|+..|.++ ++.+|..|+++|+++...           +.+|
T Consensus         1 L~D~~~~VR~~A~~aL~~~~--~----------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~~-----------~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG--D----------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQDE-----------RAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS--S----------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCSH-----------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC--H----------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcchh-----------hhHH
Confidence            56788899999999987652  1          3567888999988 999999999999887431           2578


Q ss_pred             HHHHHhccCCHhHHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHH
Q 035507          550 PLVNLLQNAEFDIKEEAAWAISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE  614 (684)
Q Consensus       550 ~Li~ll~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~  614 (684)
                      .|..++.+.++.+|..|+++|+.+-   ++.         .++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~---~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC---ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8999999999999999999999883   232         4667788999999999999998875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.11  E-value=2.2e-07  Score=76.70  Aligned_cols=108  Identities=20%  Similarity=0.225  Sum_probs=88.5

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHH
Q 035507          301 MREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIP  380 (684)
Q Consensus       301 ~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~  380 (684)
                      ++++ +.+|..|+++|+.+..            ..++.|+..|.++++.+|..|+++|+++..           .+.++.
T Consensus         2 ~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~   57 (111)
T d1te4a_           2 ADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP   57 (111)
T ss_dssp             CSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred             CCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence            4555 6788888888876532            468899999999999999999999998732           224788


Q ss_pred             HHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHH
Q 035507          381 LLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALF  443 (684)
Q Consensus       381 Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~  443 (684)
                      |+..+ ++.++.++..++++|+.+..          ...++.|..++.++++.++..|+.+|.
T Consensus        58 L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88888 67899999999999998743          467889999999999999999998874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.03  Score=52.52  Aligned_cols=211  Identities=12%  Similarity=0.114  Sum_probs=148.4

Q ss_pred             HHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc----hhHhhcCCHHHHHHHhccCCchHHHHHHHHHHHHh
Q 035507          329 VVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR----DLVLSEGALIPLLAQLNEHTELSMLRIATTTLSNL  404 (684)
Q Consensus       329 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r----~~i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL  404 (684)
                      .+...+.+..|+..|..-+.+.|..+..+.+++.+.....|    +.+...  ...+..++....++++.-.+...|...
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            34456788899999988889999999999999987665544    223321  123333333334556666666777777


Q ss_pred             ccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHh---chHHHHHHhcCCCCcccHhHH
Q 035507          405 CRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEA---GVCGRLVELLGHPSPSVLTPA  481 (684)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~a  481 (684)
                      ++...-.........+-.+.+.+..++-++..+|..++..+. .........++..   .++.....+|.+++--++..+
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelL-t~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS  220 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLL-TRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  220 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHH-HSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHH-HhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence            766433333344566677778888899999999999999888 5555555555554   366777889999999999999


Q ss_pred             HHHHHHHHcCChhh---HHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcC--ChHHHHHHH
Q 035507          482 LWTVGNIVMGDDFQ---TQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACG--NREQIQAVI  543 (684)
Q Consensus       482 l~~L~nl~~~~~~~---~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~  543 (684)
                      +..||.+.......   ++.+-+..-+..++.+|.+. +..++-+|..++--+++.  .+..+..++
T Consensus       221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANpnKp~~I~~IL  286 (330)
T d1upka_         221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDIL  286 (330)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCCCCCHHHHHHH
Confidence            99999998544321   22233445688999999998 999999999999888773  334444443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.58  E-value=0.00072  Score=62.42  Aligned_cols=178  Identities=16%  Similarity=0.080  Sum_probs=95.7

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCC
Q 035507          298 EFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGA  377 (684)
Q Consensus       298 ~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~  377 (684)
                      .+|.++. .+++..|+.                  +-.+..|..+++++++.||..|+..|+                  
T Consensus        49 ~~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------   91 (233)
T d1lrva_          49 QYLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLP------------------   91 (233)
T ss_dssp             GGTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcC------------------
Confidence            4566666 677766543                  133677788888999999988875431                  


Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHH-----HhhccCCChH
Q 035507          378 LIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWAL-----FGLSGDRNND  452 (684)
Q Consensus       378 l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L-----~~L~~~~~~~  452 (684)
                      ...+.. +..+++..++..+...+   .              .+.|..++.++++.|+..+...+     ..+..+.+.+
T Consensus        92 ~~~L~~-L~~D~d~~VR~~aa~~l---~--------------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~  153 (233)
T d1lrva_          92 REQLSA-LMFDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQ  153 (233)
T ss_dssp             SGGGGG-TTTCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHH
T ss_pred             HHHHHH-HhcCCChhHHHHHHhcc---C--------------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHH
Confidence            011222 23677777877665432   1              13355567777788777765531     1122111222


Q ss_pred             HHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHh
Q 035507          453 KIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIA  532 (684)
Q Consensus       453 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  532 (684)
                      ....+...-..+.+..+++++++.++..++..++                  .+.|..++.++ +..||..++.      
T Consensus       154 VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~------------------~~~L~~l~~D~-d~~VR~aaae------  208 (233)
T d1lrva_         154 VRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR------------------GDDLLELLHDP-DWTVRLAAVE------  208 (233)
T ss_dssp             HHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC------------------GGGGGGGGGCS-SHHHHHHHHH------
T ss_pred             HHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcC------------------cHHHHHHHhCC-CHHHHHHHHH------
Confidence            2222222222334444455555555554443221                  13344455555 6666655542      


Q ss_pred             cCChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHH
Q 035507          533 CGNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAW  568 (684)
Q Consensus       533 ~~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~  568 (684)
                                  . +.+.++..|.+++++|+..|+.
T Consensus       209 ------------~-~~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         209 ------------H-ASLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             ------------H-SCHHHHHHCCCCCHHHHHHHHC
T ss_pred             ------------h-ccHHHHHHhCCCCHHHHHHHHH
Confidence                        1 2345667777888888887753

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.12  Score=57.60  Aligned_cols=224  Identities=8%  Similarity=0.068  Sum_probs=124.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCC------------CcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHhcCCch
Q 035507          260 SDDNNLQLEATTQFQKLLSIES------------MPIEEVIESGVVPRFVEFLMRE--DYPQLQFQAAWALTNIASGTSE  325 (684)
Q Consensus       260 s~~~~~~~~a~~~L~~l~s~~~------------~~~~~ii~~g~i~~Lv~lL~~~--~~~~v~~~A~~~L~~l~~~~~~  325 (684)
                      +.++..+..+...+..+.....            .....+..    +.+...+...  ..+.++..|+|+++..+.....
T Consensus       416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~----~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~  491 (959)
T d1wa5c_         416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK  491 (959)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHH----HHHHHHHccCCCchHHHHHHHHHHHHHHHhhccH
Confidence            3566677777777766654321            11222221    2222233222  2378999999999998873321


Q ss_pred             hHHHHHhcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCc--------hhHhh--cCCHHHHHHHhccCCchH---
Q 035507          326 NTKVVIEHDAVPIFVKLLASPSDDVREQAVWALGNVAADSSGCR--------DLVLS--EGALIPLLAQLNEHTELS---  392 (684)
Q Consensus       326 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r--------~~i~~--~g~l~~Ll~~L~~~~~~~---  392 (684)
                        ...  ..+++.++..|.+++..++..|++++..++.......        +.+..  ...+..++..+.......   
T Consensus       492 --~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~  567 (959)
T d1wa5c_         492 --AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL  567 (959)
T ss_dssp             --HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             --HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhH
Confidence              111  2468899999999999999999999999985432210        11100  012334444443222111   


Q ss_pred             -HHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhc-----CCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHH
Q 035507          393 -MLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIH-----SNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRL  466 (684)
Q Consensus       393 -v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L  466 (684)
                       ....++.++..+..............+++.+...+.     ..++.....+..+++.+.....++... .....++|.+
T Consensus       568 ~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~l~~~l~p~i  646 (959)
T d1wa5c_         568 AENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTF  646 (959)
T ss_dssp             TSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHH
Confidence             112355555555433322223334455555555442     234666777777777776222233333 2344577888


Q ss_pred             HHhcCCCCcccHhHHHHHHHHHHcCC
Q 035507          467 VELLGHPSPSVLTPALWTVGNIVMGD  492 (684)
Q Consensus       467 ~~lL~~~~~~v~~~al~~L~nl~~~~  492 (684)
                      ...+..........++..+..+....
T Consensus       647 ~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         647 LTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHhC
Confidence            88887777777888888887776544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.062  Score=50.37  Aligned_cols=200  Identities=12%  Similarity=0.104  Sum_probs=146.7

Q ss_pred             HhhcCCHHHHHHHhccCCchHHHHHHHHHHHHhccCCCCCChhhh------hchHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 035507          372 VLSEGALIPLLAQLNEHTELSMLRIATTTLSNLCRGKPRPLFDQV------RPALPALAQLIHSNDEQVLTDACWALFGL  445 (684)
Q Consensus       372 i~~~g~l~~Ll~~L~~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~------~~~l~~L~~lL~~~d~~v~~~al~~L~~L  445 (684)
                      +...+.+..++..| ..-+-+.++.++.+.+++.+.........+      ..++..|+..-  +++++...+-..|...
T Consensus        65 ~~~~d~l~~Li~~L-~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREc  141 (330)
T d1upka_          65 LYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhC-CCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHH
Confidence            34456677888888 777889999999999999998733332211      33333333332  3455555554555555


Q ss_pred             ccCCChHHHHHHHHhchHHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcC---ChHHHHHHhccCCChhHHH
Q 035507          446 SGDRNNDKIQAVIEAGVCGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHG---AVPCLLALLIHNHKNSIKK  522 (684)
Q Consensus       446 ~~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g---~l~~L~~lL~~~~~~~v~~  522 (684)
                      +  ..+.....++....+..+.+.++.++-++...|..++..+.+.++......+..+   ++..+..+|.++ +.-+|+
T Consensus       142 i--k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrR  218 (330)
T d1upka_         142 I--RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR  218 (330)
T ss_dssp             H--TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred             H--hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHH
Confidence            5  5667778888888899999999999999999999999999888876666666543   577788889888 999999


Q ss_pred             HHHHHHHHHhcC--ChHHH-HHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCC
Q 035507          523 EVSWIISNIACG--NREQI-QAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRG  577 (684)
Q Consensus       523 ~a~~~L~nl~~~--~~~~~-~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~  577 (684)
                      .+...|+.+...  +.... .++-+..-+..++.+|.+.+..++-+|-.++.-++...
T Consensus       219 qSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            999999999753  32222 23334456889999999999999999999888877643

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.93  E-value=0.17  Score=48.91  Aligned_cols=210  Identities=15%  Similarity=0.114  Sum_probs=124.6

Q ss_pred             ChHHHHHhcCCCChHHHHHHHHHHHHhhCCCCCCchhHhhcCCHHHHHHHhcc---CCchHHHHHHHHHHHHhcc----C
Q 035507          335 AVPIFVKLLASPSDDVREQAVWALGNVAADSSGCRDLVLSEGALIPLLAQLNE---HTELSMLRIATTTLSNLCR----G  407 (684)
Q Consensus       335 ~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~~g~l~~Ll~~L~~---~~~~~v~~~a~~~L~nL~~----~  407 (684)
                      ++..+.+++.++...-.+. ...+..++.......+      .+..+..++..   ..++.+...+.-+++++..    .
T Consensus        89 a~~~i~~~I~~~~ls~~ea-~~~l~~l~~~~~Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~  161 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEA-TQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN  161 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHH-HHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHHH-HHHHHHHhccCCCCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC
Confidence            4566677676644333222 2233333322211122      24455555532   2356666666666665543    3


Q ss_pred             CCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCCC-------CcccHhH
Q 035507          408 KPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGHP-------SPSVLTP  480 (684)
Q Consensus       408 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~~-------~~~v~~~  480 (684)
                      .+.........+...+.+.....+.+-+.-++.+|+|+. .           .+.++.+..++...       ...+|..
T Consensus       162 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-~-----------p~~i~~l~~~l~~~~~~~~~~~~~vR~a  229 (336)
T d1lsha1         162 TVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-Q-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAE  229 (336)
T ss_dssp             CSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-C-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC-C-----------HhHHHHHHHHhcccccccccccHHHHHH
Confidence            333333334455555556666778888888899999987 2           24577788887542       3468999


Q ss_pred             HHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccC-CChhHHHHHHHHHHHHhcCChHHHHHHHHhCCHHHHHHHhcc-C
Q 035507          481 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKNSIKKEVSWIISNIACGNREQIQAVIDAGLIGPLVNLLQN-A  558 (684)
Q Consensus       481 al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~Li~ll~~-~  558 (684)
                      |++++.+++...+...+        +.+..++.+. .+.++|..|+.+|... .-+..         .+..+...+.. .
T Consensus       230 Ai~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E~  291 (336)
T d1lsha1         230 AIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRREP  291 (336)
T ss_dssp             HHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTCS
T ss_pred             HHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhCc
Confidence            99999999887664333        3455555333 3788999888887653 11222         34445555544 4


Q ss_pred             CHhHHHHHHHHHHHhhcCCCHHH
Q 035507          559 EFDIKEEAAWAISNASSRGTHDQ  581 (684)
Q Consensus       559 ~~~v~~~a~~aL~nl~~~~~~~~  581 (684)
                      +..|.......|.+++....|..
T Consensus       292 ~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         292 NLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHHHHHHHHhCCCcch
Confidence            88888888888888888665543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.38  E-value=0.34  Score=53.75  Aligned_cols=257  Identities=9%  Similarity=0.049  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhc----C--CCChHHHHHHHHHHHHhhCCCCCCchhHhh----cCC
Q 035507          308 LQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLL----A--SPSDDVREQAVWALGNVAADSSGCRDLVLS----EGA  377 (684)
Q Consensus       308 v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL----~--~~~~~v~~~a~~~L~nLa~~~~~~r~~i~~----~g~  377 (684)
                      .+..|...+..++....+.....+    .+.+...+    .  +.+...++.++.+++.++............    ...
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~  452 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIF----LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             HHHHHHHHHHHHHHhccccchHHH----HHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence            566666777777764333222111    22222222    2  256778899999999887433221111000    011


Q ss_pred             HHHHH----HHhc--cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCh
Q 035507          378 LIPLL----AQLN--EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHSNDEQVLTDACWALFGLSGDRNN  451 (684)
Q Consensus       378 l~~Ll----~~L~--~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~al~~L~~L~~~~~~  451 (684)
                      .+.+.    ..+.  ......++..++|+++..+....   ......+++.++.++.+++..++..|++++..++ ....
T Consensus       453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~-~~~~  528 (959)
T d1wa5c_         453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKIL-TIRE  528 (959)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TCBS
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-Hhhc
Confidence            22222    2222  22346788899999999887642   2345788999999999999999999999999887 4321


Q ss_pred             H-----------HHHHHHHhchHHHHHHhcCCCCcc-----cHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHh---
Q 035507          452 D-----------KIQAVIEAGVCGRLVELLGHPSPS-----VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL---  512 (684)
Q Consensus       452 ~-----------~~~~~~~~g~l~~L~~lL~~~~~~-----v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL---  512 (684)
                      .           .....+. .++..++..+......     ....++.+++.+.....+....... .+++.+...+   
T Consensus       529 ~~~~~~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~-~i~~~l~~~~~~~  606 (959)
T d1wa5c_         529 SNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIM  606 (959)
T ss_dssp             CSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHH
T ss_pred             ccccchhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            1           1111111 2344455554332221     2234666666655322211111100 1233443333   


Q ss_pred             -ccCCChhHHHHHHHHHHHHhc-CChHHHHHHHHhCCHHHHHHHhccCCHhHHHHHHHHHHHhhc
Q 035507          513 -IHNHKNSIKKEVSWIISNIAC-GNREQIQAVIDAGLIGPLVNLLQNAEFDIKEEAAWAISNASS  575 (684)
Q Consensus       513 -~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~  575 (684)
                       .++.++.....+..+++.+.. .+++....+ ...++|.+..++.....+....+...+..+..
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             hcCccchHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence             333355666777777887765 334444333 34578888888887766666666666655543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.25  E-value=0.0055  Score=56.23  Aligned_cols=153  Identities=12%  Similarity=0.141  Sum_probs=76.5

Q ss_pred             HHHHHHhcCCCCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHHhccCCChhHHHHHHHHHHHHhcCChHHHHHH
Q 035507          463 CGRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKNSIKKEVSWIISNIACGNREQIQAV  542 (684)
Q Consensus       463 l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  542 (684)
                      +..|..+++++++.||..|+..|+                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456777888888888887765432                  12344555555 6666666554321             


Q ss_pred             HHhCCHHHHHHHhccCCHhHHHHHHHH-----HHHhhcCCCHHHHHHHHHCCChHHHHhhccCCChHHHHHHHHHHH---
Q 035507          543 IDAGLIGPLVNLLQNAEFDIKEEAAWA-----ISNASSRGTHDQIKYLVTEGCIKPLCDLLQCADPKIVTVCLEGLE---  614 (684)
Q Consensus       543 ~~~g~l~~Li~ll~~~~~~v~~~a~~a-----L~nl~~~~~~~~~~~l~~~g~l~~L~~lL~~~~~~v~~~al~~L~---  614 (684)
                           .+.|..++.+++..|+..++..     +..++...+++.+......-..+.|..++++.++.|+..+...+.   
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~  190 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDD  190 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGG
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHH
Confidence                 1122233334444444443322     111122223333333333333556677777888888877765442   


Q ss_pred             --HHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 035507          615 --NILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEKSV  665 (684)
Q Consensus       615 --~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~a~  665 (684)
                        .++...+            -......-+..+.+.+..| .+++++|.+.|.
T Consensus       191 L~~l~~D~d------------~~VR~aaae~~~~~ll~~L-~D~d~~VR~aA~  230 (233)
T d1lrva_         191 LLELLHDPD------------WTVRLAAVEHASLEALREL-DEPDPEVRLAIA  230 (233)
T ss_dssp             GGGGGGCSS------------HHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHH
T ss_pred             HHHHHhCCC------------HHHHHHHHHhccHHHHHHh-CCCCHHHHHHHH
Confidence              1111100            1122222334445556655 578888887664

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.01  E-value=0.89  Score=43.47  Aligned_cols=201  Identities=15%  Similarity=0.186  Sum_probs=123.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHhcCCchhHHHHHhcCChHHHHHhcCC----CChHHHHHHHHHHHHhh----C
Q 035507          292 VVPRFVEFLMREDYPQLQFQAAWALTNIASGTSENTKVVIEHDAVPIFVKLLAS----PSDDVREQAVWALGNVA----A  363 (684)
Q Consensus       292 ~i~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Li~lL~~----~~~~v~~~a~~~L~nLa----~  363 (684)
                      .+..+.+++.+..-+.  .+|...+..++.. .....     ..+..+..++.+    .++.++..+..++|+++    .
T Consensus        89 a~~~i~~~I~~~~ls~--~ea~~~l~~l~~~-~~Pt~-----~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          89 ALLFLKRTLASEQLTS--AEATQIVASTLSN-QQATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHHTTCSCH--HHHHHHHHHHHHT-CCCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCH--HHHHHHHHHHhcc-CCCCH-----HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            4556777776655222  2344455555542 22222     224556666665    57889999999999887    2


Q ss_pred             CCCCCchhHhhcCCHHHHHHHhc---cCCchHHHHHHHHHHHHhccCCCCCChhhhhchHHHHHHHhcC-------CcHH
Q 035507          364 DSSGCRDLVLSEGALIPLLAQLN---EHTELSMLRIATTTLSNLCRGKPRPLFDQVRPALPALAQLIHS-------NDEQ  433 (684)
Q Consensus       364 ~~~~~r~~i~~~g~l~~Ll~~L~---~~~~~~v~~~a~~~L~nL~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~  433 (684)
                      ..+.+.+.     .++.+...+.   +..+.+-...++.+|+|+-.          ...++.+..++..       ....
T Consensus       161 ~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         161 NTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             TCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             CCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHH
Confidence            33334332     2344444432   44556666778899999853          2567777777753       2478


Q ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHhchHHHHHHhcCC--CCcccHhHHHHHHHHHHcCChhhHHHHHhcCChHHHHHH
Q 035507          434 VLTDACWALFGLSGDRNNDKIQAVIEAGVCGRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL  511 (684)
Q Consensus       434 v~~~al~~L~~L~~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~i~~g~l~~L~~l  511 (684)
                      ++..|++++.++. ...+....        +.+..++.+  .+..+|..|+..+..  +..+ .       ..+..+...
T Consensus       226 vR~aAi~Alr~~~-~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~-~-------~~l~~i~~~  286 (336)
T d1lsha1         226 VQAEAIMALRNIA-KRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFE--SKPS-V-------ALVSMVAVR  286 (336)
T ss_dssp             HHHHHHHTTTTGG-GTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC-H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-hcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHh--cCCC-H-------HHHHHHHHH
Confidence            9999999999998 54443322        344444433  456788888777744  2222 1       135566777


Q ss_pred             hccCCChhHHHHHHHHHHHHhcC
Q 035507          512 LIHNHKNSIKKEVSWIISNIACG  534 (684)
Q Consensus       512 L~~~~~~~v~~~a~~~L~nl~~~  534 (684)
                      +....+..|+......|.+++..
T Consensus       287 l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         287 LRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCcHHHHHHHHHHHHHHHHhC
Confidence            76655888888888889999874

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.85  E-value=1  Score=43.22  Aligned_cols=156  Identities=12%  Similarity=0.120  Sum_probs=104.4

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHHhcCCC-CcHHHHHHcCCHHHHHHhhcC---------C-CCHHHHHHHHHHHHHHh
Q 035507          253 MMVAGVWSDD-NNLQLEATTQFQKLLSIES-MPIEEVIESGVVPRFVEFLMR---------E-DYPQLQFQAAWALTNIA  320 (684)
Q Consensus       253 ~lv~~L~s~~-~~~~~~a~~~L~~l~s~~~-~~~~~ii~~g~i~~Lv~lL~~---------~-~~~~v~~~A~~~L~~l~  320 (684)
                      ..+..|+++- .+.....+..|+.-+...+ .-++.+ ..+++..|+.+|..         . .+...+.+++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            4555665543 2334455666666666655 445555 45566667776631         1 12568889999999999


Q ss_pred             cCCchhHHHHH-hcCChHHHHHhcCCCChHHHHHHHHHHHHhhCCCC--CCchhH----------hhcCCHHHHHHHhcc
Q 035507          321 SGTSENTKVVI-EHDAVPIFVKLLASPSDDVREQAVWALGNVAADSS--GCRDLV----------LSEGALIPLLAQLNE  387 (684)
Q Consensus       321 ~~~~~~~~~i~-~~g~i~~Li~lL~~~~~~v~~~a~~~L~nLa~~~~--~~r~~i----------~~~g~l~~Ll~~L~~  387 (684)
                      . +......++ ..+++..++..|.++++.++..|+..|..+|..+.  .....+          .+.+-+.+++..+..
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8 455555544 56789999999999999999999999999985432  212222          233456778888866


Q ss_pred             CCchHHHHHHHHHHHHhccCCCC
Q 035507          388 HTELSMLRIATTTLSNLCRGKPR  410 (684)
Q Consensus       388 ~~~~~v~~~a~~~L~nL~~~~~~  410 (684)
                      ..+.+....++..+..++.+.+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            66777777777777777776543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.73  E-value=1.8  Score=41.39  Aligned_cols=138  Identities=13%  Similarity=0.100  Sum_probs=100.8

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHH-HhCCHHHHHHHhccCCHhHHHHHHHHHHHhhcCCC-----HH------HHHHH
Q 035507          518 NSIKKEVSWIISNIACGNREQIQAVI-DAGLIGPLVNLLQNAEFDIKEEAAWAISNASSRGT-----HD------QIKYL  585 (684)
Q Consensus       518 ~~v~~~a~~~L~nl~~~~~~~~~~l~-~~g~l~~Li~ll~~~~~~v~~~a~~aL~nl~~~~~-----~~------~~~~l  585 (684)
                      .....++..+|..+.... .....++ ..+.+..+...+.+..+.++..|...|..++....     ..      .....
T Consensus        70 ~~~e~e~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHTSSH-HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccH-HHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            457778888888887643 4445454 45678899999999999999999999988875321     11      12233


Q ss_pred             HHCCChHHHHhhccCC-ChHHHHHHHHHHHHHHhcccccccCCCCCcchhHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 035507          586 VTEGCIKPLCDLLQCA-DPKIVTVCLEGLENILKVGEAEKNTDSDIGDINQFAQLVEEAEGLEKIENLQSHDNNEIHEK  663 (684)
Q Consensus       586 ~~~g~l~~L~~lL~~~-~~~v~~~al~~L~~il~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~L~~L~~~~~~~i~~~  663 (684)
                      .+.+-..++++.+... +.+....++..+..++...+...       .-......+..+|..+.++.+....++++...
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~-------~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD-------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH-------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHH-------HHHHHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence            4566788888888754 67888888888888887655432       23346788889999999999999988887543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=0.33  Score=45.41  Aligned_cols=55  Identities=20%  Similarity=0.185  Sum_probs=30.5

Q ss_pred             hccccccCCccccccccCccccccCCccceeeccCcccccccc-cccCcccchhhhh
Q 035507          137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDCHNMMIFSR-GELSAPMLHKVQL  192 (684)
Q Consensus       137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~Cp~l~~~~~-~~~~~~~l~~~~~  192 (684)
                      |++|.|.+.+++..-.-. ....+|+|++|.+.+|+++.--.. ....-|+|+....
T Consensus       177 L~~L~L~~~~~itd~~~~-~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l  232 (284)
T d2astb2         177 LVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV  232 (284)
T ss_dssp             CSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             ccccccccccCCCchhhh-hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence            566666666655432221 124678888888888887752111 1233466665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.37  E-value=0.83  Score=42.50  Aligned_cols=34  Identities=21%  Similarity=0.092  Sum_probs=22.7

Q ss_pred             hccccccCCccccccccCccccccCCccceeeccC
Q 035507          137 EKKLTLSYLKSLTSFCSGSCAIKFPSLEVLVVDDC  171 (684)
Q Consensus       137 l~~l~l~~Lp~L~~~~~~~~~~~fp~L~~~~v~~C  171 (684)
                      |++|.|.+.+++..-.-.. -..+|+|+.|++.+|
T Consensus       202 L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            6888887777664322211 246799999998776