Citrus Sinensis ID: 035509

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MENNPLHQQIATMRQSFLDEEILNDQFIQLesmateddpafaedTVSLYFQETTKIIATLEEefvkdpidynALEKCLHDFKGLCVSIGASKVLIEVNKAraccdngniegGKAALEKVKVEQETLKAKLDSYFQLVKQS
Flexible Loop (DISEMBL)
MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS
Low Complexity Region (SEG)
MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS
Disordered region (IsUnstruct)
****************FLDEEILNDQFIQLESMAT**DPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYF******
Disordered Region (DISOPRED)
*********IATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACC***NIEGGKAALEKVKVEQETLKAKLDSYFQLVKQ*
Disordered Region (DISEMBL)
********QIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS
Disordered Region (DISPRO)
*ENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9LU15	127	Histidine-containing phos	no	no	0.864	0.952	0.365	2e-18
Q9SAZ5	155	Histidine-containing phos	no	no	0.928	0.838	0.318	9e-13
Q9ZNV8	156	Histidine-containing phos	no	no	0.957	0.858	0.288	3e-12
Q8L9T7	157	Histidine-containing phos	no	no	0.957	0.853	0.318	4e-12
Q9ZNV9	154	Histidine-containing phos	no	no	0.892	0.811	0.312	9e-09
Q6VAK4	149	Histidine-containing phos	no	no	0.971	0.912	0.272	3e-07

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 5/126 (3%)

Query: 10  IATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPI 69
           I    Q +LDE     QF++LE +  + +P F E+  +LYF+++ ++I  +++   +   
Sbjct: 4   IGKCMQGYLDE-----QFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSF 58

Query: 70  DYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAK 129
           D+N L+  +H FKG   SIGASKV  E    R  C  GN EG     +++K E  TL+ K
Sbjct: 59  DFNRLDSYMHQFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKK 118

Query: 130 LDSYFQ 135
           L+ YFQ
Sbjct: 119 LEHYFQ 124

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 8/138 (5%)

Query: 10  IATMRQSFLDEEI-------LNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEE 62
           IA +++ F D  I       L+DQF +L+ +  E  P F  + V+L+F++  K+I+ +  
Sbjct: 5   IAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMAR 64

Query: 63  EFVKDP-IDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKV 121
              +   +D+  +   +H  KG   S+GA +V       + CCD+ N EG    L++V +
Sbjct: 65  ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDI 124

Query: 122 EQETLKAKLDSYFQLVKQ 139
           E +TLKAKL   F L +Q
Sbjct: 125 EYKTLKAKLQDLFNLEQQ 142

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 6   LHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEF- 64
           L +Q      S   +  L+DQF +L+ +  +  P F  + +SL+F++  K+I+ +     
Sbjct: 8   LQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALD 67

Query: 65  VKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
               +D++ +   +H  KG   S+GA +V       + CC+  N EG    L++V +E +
Sbjct: 68  TTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYK 127

Query: 125 TLKAKLDSYFQLVKQ 139
            LK KL   F L KQ
Sbjct: 128 ALKTKLQDMFNLEKQ 142

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 6   LHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFV 65
           L +Q      S   +  L++QF +L  +  E  P F  + VSL+F + +K+I T+     
Sbjct: 9   LQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLE 68

Query: 66  K-DPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
           + D +D+  ++  +H  KG   S+GA +V       + CCD  N EG    L++V  E +
Sbjct: 69  RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEYK 128

Query: 125 TLKAKLDSYFQLVKQ 139
            LK KL   F L KQ
Sbjct: 129 MLKTKLQDLFNLEKQ 143

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%)

Query: 15  QSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNAL 74
           +S   E IL+ QF+QL+ +  E +P F    V+L+FQ++ +I+  L     +  +D+  +
Sbjct: 15  KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 74

Query: 75  EKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYF 134
           +  +H  KG   SIGA +V       R+ C+  N+E     L++VK E   +K +L++ F
Sbjct: 75  DPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLF 134

Query: 135 QLVKQ 139
           +L +Q
Sbjct: 135 KLEQQ 139

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDD-PAFAEDTVSLYFQETTKII-- 57
           M    L  Q+  +  S   + ++++QF QL+ +  E   P F  + V+L+  +  +II  
Sbjct: 1   MAAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINE 60

Query: 58  -ATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAAL 116
            ATL E+ V   ++++ ++  +H  KG   S+GA KV     + R  C + + +G   AL
Sbjct: 61  IATLLEQPV---VNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMAL 117

Query: 117 EKVKVEQETLKAKLDSYFQLVKQ 139
             V+ +   L+ K  +  QL +Q
Sbjct: 118 AVVRNDFYDLRNKFQTMLQLEQQ 140

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
225445098	214	PREDICTED: histidine-containing phosphot	0.971	0.635	0.455	2e-30
255549828	150	Histidine-containing phosphotransfer pro	0.992	0.926	0.424	4e-27
224054404	224	histidine phosphotransfer protein [Popul	1.0	0.625	0.421	2e-26
391349165	150	histidine phosphotransfer protein [Popul	1.0	0.933	0.421	2e-26
357454793	150	Histidine phosphotransfer protein [Medic	1.0	0.933	0.385	5e-26
357454789	150	Histidine phosphotransfer protein [Medic	1.0	0.933	0.385	9e-26
388504598	150	unknown [Medicago truncatula]	1.0	0.933	0.385	1e-25
449447821	150	PREDICTED: histidine-containing phosphot	1.0	0.933	0.385	3e-25
224092264	147	histidine phosphotransfer protein [Popul	1.0	0.952	0.418	3e-25
356526081	151	PREDICTED: histidine-containing phosphot	1.0	0.927	0.382	7e-25

>gi|225445098|ref|XP_002283696.1| PREDICTED: histidine-containing phosphotransfer protein 4 [Vitis vinifera] gi|297738760|emb|CBI28005.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/136 (45%), Positives = 96/136 (70%)

Query: 4   NPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEE 63
           + LHQQI+ M+QS LDE  ++  F++LE +   D+  F E+ ++L+F ++ ++I  +E+E
Sbjct: 3   STLHQQISAMKQSLLDEGFVDGHFVELELLEDGDNLHFTEEIITLFFTDSARLIVDVEKE 62

Query: 64  FVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQ 123
              DPIDY+ ++K LH FKG   S+GA++V ++  K R  C +G++EG KAAL+++K E 
Sbjct: 63  LNNDPIDYSKVDKILHQFKGSSSSVGANRVRLQGTKLRESCKDGDVEGWKAALKQLKKEH 122

Query: 124 ETLKAKLDSYFQLVKQ 139
            TLK KLD+YFQLVKQ
Sbjct: 123 ATLKEKLDTYFQLVKQ 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549828|ref|XP_002515965.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223544870|gb|EEF46385.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 89/139 (64%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           ME N LH+Q+A  RQS  D+  L++QF+QLE +  + +P F E+ V+LY++++ ++I ++
Sbjct: 1   MERNKLHRQVALARQSLFDQGFLDEQFLQLEELQDDANPNFVEEVVTLYYRDSARLILSI 60

Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
           E+   + P+D+N L+  +H FKG   SIGA KV  E    R  C  GN EG     +++K
Sbjct: 61  EQGLERHPLDFNKLDSHMHQFKGSSSSIGAKKVKAECTLFREYCRAGNGEGCARTFQQLK 120

Query: 121 VEQETLKAKLDSYFQLVKQ 139
            E  TLK KL+SYFQL +Q
Sbjct: 121 KEYATLKKKLESYFQLARQ 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054404|ref|XP_002298243.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222845501|gb|EEE83048.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 90/140 (64%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           ME N L +Q+A  RQS  D+  L++QFIQLE +  + +P F E+ VSL+++++ ++I+ +
Sbjct: 1   MERNQLRRQVALTRQSLFDQGFLDEQFIQLEELQDDANPNFVEEVVSLHYRDSARLISNI 60

Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
           E+   K+P+D+N L+  +H FKG   SIGA KV  E    R  C  GN EG     +++K
Sbjct: 61  EKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEGCMRTFQQIK 120

Query: 121 VEQETLKAKLDSYFQLVKQS 140
            E  TLK KL++YFQL +Q+
Sbjct: 121 KEYATLKRKLETYFQLARQA 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391349165|emb|CCI55474.1| histidine phosphotransfer protein [Populus x canadensis]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 90/140 (64%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           ME N L +Q+A  RQS  D+  L++QFIQLE +  + +P F E+ VSL+++++ ++I+ +
Sbjct: 1   MERNQLRRQVALTRQSLFDQGFLDEQFIQLEELQDDANPNFVEEVVSLHYRDSARLISNI 60

Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
           E+   K+P+D+N L+  +H FKG   SIGA KV  E    R  C  GN EG     +++K
Sbjct: 61  EKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEGCMRTFQQIK 120

Query: 121 VEQETLKAKLDSYFQLVKQS 140
            E  TLK KL++YFQL +Q+
Sbjct: 121 KEYATLKRKLETYFQLARQA 140

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454793|ref|XP_003597677.1| Histidine phosphotransfer protein [Medicago truncatula] gi|355486725|gb|AES67928.1| Histidine phosphotransfer protein [Medicago truncatula]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 92/140 (65%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           M+ N   +Q+A M+QS  D+  L++QFIQLE +  + +P F E+ V+LY+++++++I++L
Sbjct: 1   MDRNNSRRQLAAMKQSLFDQGHLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISSL 60

Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
           E+   + P+D+N L+  +H FKG   SIGA KV  E    R  C  GN EG + + +++K
Sbjct: 61  EQTLERSPLDFNKLDTIMHQFKGSSSSIGAKKVKAESTLIREYCRTGNAEGCRKSFQQMK 120

Query: 121 VEQETLKAKLDSYFQLVKQS 140
            E   L+ +L++YFQL +Q+
Sbjct: 121 REYAALRKRLETYFQLARQA 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454789|ref|XP_003597675.1| Histidine phosphotransfer protein [Medicago truncatula] gi|355486723|gb|AES67926.1| Histidine phosphotransfer protein [Medicago truncatula]

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 92/140 (65%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           M+ N   +Q+A M+QS  D+  L++QFIQLE +  + +P F E+ V+LY+++++++I++L
Sbjct: 1   MDRNNSRRQLAAMKQSLFDQGHLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISSL 60

Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
           E+   + P+D+N L+  +H FKG   SIGA KV  E    R  C  GN EG + + +++K
Sbjct: 61  EQTLERSPLDFNKLDTIMHQFKGSSSSIGAKKVKAESTLIREYCRTGNAEGCRKSFQQMK 120

Query: 121 VEQETLKAKLDSYFQLVKQS 140
            E   L+ +L++YFQL +Q+
Sbjct: 121 KEYVALRKRLETYFQLARQA 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504598|gb|AFK40365.1| unknown [Medicago truncatula]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 92/140 (65%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           M+ N   +Q+A M+QS  D+  L++QFIQLE +  + +P F E+ V+LY+++++++I++L
Sbjct: 1   MDRNNSRRQLAAMKQSLFDQGHLDEQFIQLEELQDDANPNFVEELVTLYYRDSSRLISSL 60

Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
           E+   + P+D+N L+  +H FKG   SIGA KV  E    R  C  GN EG + + +++K
Sbjct: 61  EQTLERSPLDFNKLDTIMHQFKGSSSSIGAKKVKAESTLIREYCRTGNAEGCRKSFQQMK 120

Query: 121 VEQETLKAKLDSYFQLVKQS 140
            E   L+ +L++YFQL +Q+
Sbjct: 121 KEYVALRKRLETYFQLARQA 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447821|ref|XP_004141666.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus] gi|449480619|ref|XP_004155947.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 91/140 (65%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           ME   L +Q+A +RQS  D+  L++QF+QLE +  + +P F E+ V+LY+++++++I ++
Sbjct: 1   MEKTQLRRQLANIRQSLFDQGFLDEQFVQLEELQDDANPNFVEEIVTLYYRDSSRLILSI 60

Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
           E+   K P+D+N L+  +H FKG   SIGA KV  E  + R  C  G+ EG     +++K
Sbjct: 61  EQALQKSPLDFNKLDALMHQFKGSSSSIGAKKVKAECTQLREYCKAGSGEGCMRTFQQLK 120

Query: 121 VEQETLKAKLDSYFQLVKQS 140
            E  +L+ KL++YFQL +Q+
Sbjct: 121 KEYTSLRKKLEAYFQLARQA 140

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092264|ref|XP_002309533.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222855509|gb|EEE93056.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 88/141 (62%), Gaps = 1/141 (0%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           M+   L  Q+A+ R+S  D+  L+DQFIQLE +  E +P F E+ V L++ ++ ++I  +
Sbjct: 1   MDRKQLQHQVASTRRSLFDQGYLDDQFIQLEHLQDEANPNFVEEVVRLFYSDSVRLIQNI 60

Query: 61  EEEFVKDP-IDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKV 119
           E+  +  P ID+  L+  +H FKG   SIGA KV+ E +K R  C  GNIEG     + +
Sbjct: 61  EQAMINKPNIDFGKLDDYMHQFKGSSSSIGAKKVMKECSKFREYCYAGNIEGCIKTFQLL 120

Query: 120 KVEQETLKAKLDSYFQLVKQS 140
           K E  TL+ KL++YFQLVKQ+
Sbjct: 121 KQEHATLRRKLETYFQLVKQA 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526081|ref|XP_003531648.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Glycine max]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 94/141 (66%), Gaps = 1/141 (0%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           M+ N   +Q+A M+QS  D+ +L++QFIQLE +  + +P F E+ V+L++++++++I+++
Sbjct: 1   MDRNQSRRQVAAMKQSLFDQGLLDEQFIQLEELQDDANPNFVEEIVTLHYRDSSRLISSI 60

Query: 61  EEEFV-KDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKV 119
           E+    ++P+D+N L+  +H FKG   SIGA KV  E N  R  C  GN EG   + +++
Sbjct: 61  EQALKERNPLDFNKLDTLMHQFKGSSSSIGAKKVKTECNLFREYCRAGNAEGCMRSFQQL 120

Query: 120 KVEQETLKAKLDSYFQLVKQS 140
           K E   L+ KL++YFQL +Q+
Sbjct: 121 KREYAALRKKLEAYFQLARQA 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	0.957	0.864	0.303	1.1e-14
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	0.957	0.858	0.288	2.3e-14
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.957	0.853	0.318	3e-14
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.871	0.792	0.325	6.2e-14
TAIR|locus:2183184	114	AT5G19710 "AT5G19710" [Arabido	0.392	0.482	0.490	3.6e-12
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.957	0.870	0.288	8.4e-10
TAIR|locus:504955364	167	AT4G04402 "AT4G04402" [Arabido	0.835	0.700	0.265	1.3e-06

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/135 (30%), Positives = 70/135 (51%)

Query:     6 LHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFV 65
             L ++      S   +  L+DQF +L+ +  E  P F  + V+L+F++  K+I+ +     
Sbjct:     8 LQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALD 67

Query:    66 KDP-IDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
             +   +D+  +   +H  KG   S+GA +V       + CCD+ N EG    L++V +E +
Sbjct:    68 QTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYK 127

Query:   125 TLKAKLDSYFQLVKQ 139
             TLKAKL   F L +Q
Sbjct:   128 TLKAKLQDLFNLEQQ 142

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 39/135 (28%), Positives = 67/135 (49%)

Query:     6 LHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEF- 64
             L +Q      S   +  L+DQF +L+ +  +  P F  + +SL+F++  K+I+ +     
Sbjct:     8 LQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALD 67

Query:    65 VKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
                 +D++ +   +H  KG   S+GA +V       + CC+  N EG    L++V +E +
Sbjct:    68 TTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYK 127

Query:   125 TLKAKLDSYFQLVKQ 139
              LK KL   F L KQ
Sbjct:   128 ALKTKLQDMFNLEKQ 142

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/135 (31%), Positives = 67/135 (49%)

Query:     6 LHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFV 65
             L +Q      S   +  L++QF +L  +  E  P F  + VSL+F + +K+I T+     
Sbjct:     9 LQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLE 68

Query:    66 K-DPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
             + D +D+  ++  +H  KG   S+GA +V       + CCD  N EG    L++V  E +
Sbjct:    69 RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEYK 128

Query:   125 TLKAKLDSYFQLVKQ 139
              LK KL   F L KQ
Sbjct:   129 MLKTKLQDLFNLEKQ 143

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 40/123 (32%), Positives = 69/123 (56%)

Query:    17 FLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEK 76
             FL E IL+ QF+QL+ +  E +P F    V+L+FQ++ +I+  L     +  +D+  ++ 
Sbjct:    18 FL-EGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDP 76

Query:    77 CLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQL 136
              +H  KG   SIGA +V       R+ C+  N+E     L++VK E   +K +L++ F+L
Sbjct:    77 HVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKL 136

Query:   137 VKQ 139
              +Q
Sbjct:   137 EQQ 139

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2183184 AT5G19710 "AT5G19710" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query:    86 VSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS 140
             V IGA KV+ E+ KA      GNIEG K AL  +K E   L+AK ++YFQL++Q+
Sbjct:    50 VIIGAIKVVKELKKANTFLKAGNIEGVKGALPDIKKEHSELRAKFETYFQLMRQA 104

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 39/135 (28%), Positives = 64/135 (47%)

Query:     6 LHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFV 65
             L   I  +  S   + +L++QF+QL+ +  E  P F  D +++YF E+ K++  L    +
Sbjct:     9 LQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLM 68

Query:    66 -KDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
              ++  DY  +   L+   G   SIGA +V       R+  +  N  G    LE V+ E  
Sbjct:    69 DREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEYH 128

Query:   125 TLKAKLDSYFQLVKQ 139
              LK  +   FQL +Q
Sbjct:   129 YLKNMMHELFQLEQQ 143

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 34/128 (26%), Positives = 60/128 (46%)

Query:    23 LNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDP--IDYNALE--KCL 78
             L+DQF +L+ +  +  P F  + +SL+F++  K+I+ +     K    +D+  ++   C 
Sbjct:    26 LDDQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQMKLFSCT 85

Query:    79 HDFKGLCVSIGASK-VLIEVNKARACCDNGNIEGGKA------ALEKVKVEQETLKAKLD 131
               F  + V  G+   VL   N A+     G +   +        L++V +E +TL  KL 
Sbjct:    86 LVFDTVLVRRGSKLCVLASRNIAKLRITKGKLVQHRLRTHRLRCLQQVDIEYKTLTTKLQ 145

Query:   132 SYFQLVKQ 139
               F L KQ
Sbjct:   146 DMFNLEKQ 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       140   0.00091  102 3  11 22  0.46    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  526 (56 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.36u 0.10s 16.46t   Elapsed:  00:00:01
  Total cpu time:  16.36u 0.10s 16.46t   Elapsed:  00:00:01
  Start:  Mon May 20 18:36:43 2013   End:  Mon May 20 18:36:44 2013

GO:0005575 "cellular_component" evidence=ND

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
KOG4747	150	consensus Two-component phosphorelay intermediate	99.96
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.67
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.66
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.53
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.42
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.4
PRK11091	779	aerobic respiration control sensor protein ArcB; P	99.1
PRK10618	894	phosphotransfer intermediate protein in two-compon	98.93
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.64
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.61
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	97.91
PRK10547	670	chemotaxis protein CheA; Provisional	97.88
PRK09959	1197	hybrid sensory histidine kinase in two-component r	96.98
PRK15347	921	two component system sensor kinase SsrA; Provision	96.7

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.96  E-value=7.7e-29  Score=182.25  Aligned_cols=135  Identities=33%  Similarity=0.589  Sum_probs=131.5

Q ss_pred             hhHHHHHHHHHhcccchhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhcc
Q 035509            4 NPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKG   83 (140)
Q Consensus         4 ~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKG   83 (140)
                      ..++++..++.+|++++|++|++|.+|++|+++..|+||.+++..|++++++.|..|+.|+..+ .|+.+++.+-|.|||
T Consensus         6 ~~~q~~~~d~~~sl~~qgild~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~-~d~k~~~~~~hqlkg   84 (150)
T KOG4747|consen    6 ISMQRDVSDYTKSLFDQGILDSQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCE-RDFKKLGSHVHQLKG   84 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhH-hHHHHHHHHHHHccC
Confidence            3789999999999999999999999999999999999999999999999999999999999975 499999999999999


Q ss_pred             chhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035509           84 LCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQ  139 (140)
Q Consensus        84 SSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~  139 (140)
                      ||++|||.++..+|..++.+|+.+|.++|...+++++.||..++++|++|.+++||
T Consensus        85 ssssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~rq  140 (150)
T KOG4747|consen   85 SSSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLERQ  140 (150)
T ss_pred             chhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.67  E-value=1.2e-15  Score=108.90  Aligned_cols=95  Identities=19%  Similarity=0.371  Sum_probs=85.9

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhc-CCHHHHHHH
Q 035509           37 DDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDN-GNIEGGKAA  115 (140)
Q Consensus        37 ~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~-~~~~~~~~~  115 (140)
                      +.|+++.+++..|+++++..+..++.++..+  |+..+.+.||+||||++|+|+.+|+.+|.++|..++. ...+....+
T Consensus        20 ~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~--d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~~~~~~~~~~~   97 (122)
T COG2198          20 GDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRSGASLEELEEL   97 (122)
T ss_pred             CChHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CcHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            5699999999999999999999999999975  8899999999999999999999999999999999998 688999999


Q ss_pred             HHHHHHH--HHHHHHHHHHH
Q 035509          116 LEKVKVE--QETLKAKLDSY  133 (140)
Q Consensus       116 l~~l~~e--f~~~~~~L~~~  133 (140)
                      +..++.+  ...+...+.++
T Consensus        98 i~~l~~~~~~~~~~~~~~~~  117 (122)
T COG2198          98 IAELKDELQLDVLALELLTY  117 (122)
T ss_pred             HHHHHHHhcchHHHHHHHHH
Confidence            9999999  55555555444

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.66  E-value=7.5e-16  Score=102.37  Aligned_cols=83  Identities=17%  Similarity=0.368  Sum_probs=72.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHh---hcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHH---HHHHHH
Q 035509           44 DTVSLYFQETTKIIATLEEEF---VKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEG---GKAALE  117 (140)
Q Consensus        44 ~Li~~fl~d~~~~l~~l~~Al---~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~---~~~~l~  117 (140)
                      +|++.|++++++.+..|+.++   ..+  |++.+++.+|+|||+++++|+.+++.+|..+|..++.++.+.   +...+.
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~~~--d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~   78 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALEQE--DWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLD   78 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSHHC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            589999999999999999999   644  999999999999999999999999999999999999998888   566666


Q ss_pred             HHHHHHHHHHH
Q 035509          118 KVKVEQETLKA  128 (140)
Q Consensus       118 ~l~~ef~~~~~  128 (140)
                      .+...++++.+
T Consensus        79 ~l~~~l~~l~~   89 (90)
T PF01627_consen   79 ELEAMLEQLRQ   89 (90)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            66666555543

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.53  E-value=1.4e-14  Score=96.73  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=73.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 035509           44 DTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQ  123 (140)
Q Consensus        44 ~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef  123 (140)
                      +++..|+++.+..+..|+.++..  .|+..+++.+|+||||++|+|+..|..+|..+|..++... ++...+...+...|
T Consensus         2 e~~~~f~~~~~~~l~~l~~~~~~--~~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~-~~~~~~~~~l~~~~   78 (87)
T smart00073        2 EELAEFLQSLEEGLLELEKALDA--QDVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAAR-SGEVELTPDLLDLL   78 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcCH--hHHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHH
Confidence            67899999999999999999974  4999999999999999999999999999999999888644 44446778888888


Q ss_pred             HHHHHHHH
Q 035509          124 ETLKAKLD  131 (140)
Q Consensus       124 ~~~~~~L~  131 (140)
                      ..+...|.
T Consensus        79 ~~~~~~l~   86 (87)
T smart00073       79 LELVDVLK   86 (87)
T ss_pred             HHHHHHHc
Confidence            88777664

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.42  E-value=7.9e-13  Score=89.80  Aligned_cols=66  Identities=21%  Similarity=0.404  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhc--CCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCC
Q 035509           43 EDTVSLYFQETTKIIATLEEEFVK--DPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGN  108 (140)
Q Consensus        43 ~~Li~~fl~d~~~~l~~l~~Al~~--~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~  108 (140)
                      .+++..|+++.+..+..|..++.+  .+.|+..++..+|+||||++++|+.+|..+|..+|..++.+.
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~   69 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALR   69 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999981  123999999999999999999999999999999999988753

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.40  E-value=1.9e-12  Score=117.41  Aligned_cols=93  Identities=17%  Similarity=0.247  Sum_probs=87.6

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 035509           37 DDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAAL  116 (140)
Q Consensus        37 ~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l  116 (140)
                      .|++.+.+++..|+++++..+..|..++..+  |+..+++.+|.|||+++++||.+++.+|..+|..++.++.  ....+
T Consensus       876 ~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~--d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~le~~~~~~~~--~~~~~  951 (968)
T TIGR02956       876 LGVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIKKLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGAL--ELSDI  951 (968)
T ss_pred             cCcHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcccCCc--chhHH
Confidence            5788999999999999999999999999865  9999999999999999999999999999999999999988  46889


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 035509          117 EKVKVEQETLKAKLDSY  133 (140)
Q Consensus       117 ~~l~~ef~~~~~~L~~~  133 (140)
                      +.++..|..+..+|++|
T Consensus       952 ~~l~~~~~~~~~~l~~~  968 (968)
T TIGR02956       952 DEIKQAWQASKTALDQW  968 (968)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999999999875

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=99.10  E-value=9.1e-10  Score=98.58  Aligned_cols=98  Identities=13%  Similarity=0.166  Sum_probs=92.5

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 035509           37 DDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAAL  116 (140)
Q Consensus        37 ~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l  116 (140)
                      .++..+...+..|.+..+..+..|..++..+  |+..+...||.+||+++++|+..++.+|..+|.....+.++....++
T Consensus       678 ~g~~~~~~~l~~~~~~~~~~~~~l~~~l~~~--d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~  755 (779)
T PRK11091        678 VGPKLITDSLAVFEKMMPGYLSVLDSNLTAR--DQKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPAWWDNVQDWV  755 (779)
T ss_pred             cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCccccHHHHHHHH
Confidence            4677888999999999999999999999865  99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 035509          117 EKVKVEQETLKAKLDSYFQL  136 (140)
Q Consensus       117 ~~l~~ef~~~~~~L~~~l~~  136 (140)
                      ++++.+|.....+|+.|+.-
T Consensus       756 ~~l~~~~~~~~~~~~~~~~~  775 (779)
T PRK11091        756 EELKNEWRHDVEVLKAWLAQ  775 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999874

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=98.93  E-value=5.6e-09  Score=96.18  Aligned_cols=84  Identities=14%  Similarity=0.173  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 035509           41 FAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK  120 (140)
Q Consensus        41 fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~  120 (140)
                      +...+...|++..|.-+..|..++.++  |+.++.+.||.|||+++++|+..++.+|.+||..++.++..++...+.+|.
T Consensus       808 ~~s~~~~lF~~t~~~di~~L~~~~~~~--D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~~~i~~~i~~id  885 (894)
T PRK10618        808 HASDYYALFVDTVPDDVKRLYTEAATS--DFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDEPGIENYISDID  885 (894)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence            344567899999999999999999976  999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 035509          121 VEQETL  126 (140)
Q Consensus       121 ~ef~~~  126 (140)
                      ..+.++
T Consensus       886 ~~v~~l  891 (894)
T PRK10618        886 SFVKSL  891 (894)
T ss_pred             HHHHHH
Confidence            876654

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.64  E-value=2e-07  Score=84.56  Aligned_cols=88  Identities=13%  Similarity=0.181  Sum_probs=70.8

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 035509           37 DDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAAL  116 (140)
Q Consensus        37 ~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l  116 (140)
                      .+++.+.+++..|.+.++..+..++.+...+  |+..++..||.+||+++++|+..++.+|.++|..+...         
T Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ah~lkg~~~~lg~~~l~~~~~~le~~~~~~---------  888 (914)
T PRK11466        820 MGTEKIHEWLALFKQHALPLLDEIDIARASQ--DSEKIKRAAHQLKSSCSSLGMRQASQACAQLEQQPLSA---------  888 (914)
T ss_pred             cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCc---------
Confidence            4667788999999999999999999998865  89999999999999999999999999999999975432         


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 035509          117 EKVKVEQETLKAKLDSYFQ  135 (140)
Q Consensus       117 ~~l~~ef~~~~~~L~~~l~  135 (140)
                      ..+..++.+...+|+.++.
T Consensus       889 ~~~~~~~~~~~~~~~~~~~  907 (914)
T PRK11466        889 PLPHEEITRSVAALEAWLA  907 (914)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            1233444445555555543

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.61  E-value=6.3e-07  Score=80.98  Aligned_cols=96  Identities=17%  Similarity=0.271  Sum_probs=82.1

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcC-CHHHHHHH
Q 035509           37 DDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNG-NIEGGKAA  115 (140)
Q Consensus        37 ~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~-~~~~~~~~  115 (140)
                      +.++...+++..|.++.+..+..|..++...  |...++..+|.+||+++++|+.++..+|..+|..++.+ ..+.....
T Consensus       821 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~  898 (919)
T PRK11107        821 GKPDLARDMLQMLLDFLPEVRNKVEEALAGE--DPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGTSVEDLEPE  898 (919)
T ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence            4567888999999999999999999999865  89999999999999999999999999999999998876 45666666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 035509          116 LEKVKVEQETLKAKLDSYF  134 (140)
Q Consensus       116 l~~l~~ef~~~~~~L~~~l  134 (140)
                      +..+..++.++..++.+++
T Consensus       899 ~~~~~~~~~~~~~~~~~~~  917 (919)
T PRK11107        899 LLELLDEMENVARAAKKVL  917 (919)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            7777777777777766654

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.91  E-value=0.0001  Score=66.99  Aligned_cols=80  Identities=21%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHhh---cCCCCH---HHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHH
Q 035509           40 AFAEDTVSLYFQETTKIIATLEEEFV---KDPIDY---NALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIE  110 (140)
Q Consensus        40 ~fv~~Li~~fl~d~~~~l~~l~~Al~---~~~~D~---~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~  110 (140)
                      .-..++.+.|++++++++..|..++-   ..+.|.   .++.+.||+|||+++.+|...++.+|-.+|..   .|.|...
T Consensus         4 ~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~ld~~r~g~~~   83 (716)
T COG0643           4 MDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLLDALRNGELE   83 (716)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHHhcCCcc
Confidence            34568899999999999999998654   223344   47788999999999999999999999999984   6666554


Q ss_pred             HHHHHHHHH
Q 035509          111 GGKAALEKV  119 (140)
Q Consensus       111 ~~~~~l~~l  119 (140)
                      --..++..+
T Consensus        84 ~~~~l~d~~   92 (716)
T COG0643          84 LTSELLDLL   92 (716)
T ss_pred             CcHHHHHHH
Confidence            333444433

>PRK10547 chemotaxis protein CheA; Provisional

Probab=97.88  E-value=0.00013  Score=65.90  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhh---cCCCC---HHHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCH
Q 035509           43 EDTVSLYFQETTKIIATLEEEFV---KDPID---YNALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNI  109 (140)
Q Consensus        43 ~~Li~~fl~d~~~~l~~l~~Al~---~~~~D---~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~  109 (140)
                      .+++..|++++.++|+.|+..+-   ..+.|   ...+-+.+|++||+|+.+|...+..+|-.+|..   .|.|..
T Consensus         4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld~vR~g~l   79 (670)
T PRK10547          4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLDEARRGEM   79 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHHHHHCCCC
Confidence            47889999999999999998864   33335   346778999999999999999999999999985   555643

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=96.98  E-value=0.021  Score=53.81  Aligned_cols=95  Identities=14%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCC-HHHHHHHH
Q 035509           38 DPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGN-IEGGKAAL  116 (140)
Q Consensus        38 ~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~-~~~~~~~l  116 (140)
                      ....+.+++..+...+...+..+..+...+  |...++.++|.+||++..+|+..+...|.++|......+ .+.....+
T Consensus      1098 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~~~~~~l~~~~ 1175 (1197)
T PRK09959       1098 DLQLMQEILMTFQHETHKDLPAAFHALEAG--DNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQLL 1175 (1197)
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcCCchHHHHHHH
Confidence            446778888999999999888888888866  889999999999999999999999999999998876554 34455556


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 035509          117 EKVKVEQETLKAKLDSYF  134 (140)
Q Consensus       117 ~~l~~ef~~~~~~L~~~l  134 (140)
                      ..+..........++.++
T Consensus      1176 ~~~~~~~~~~~~~~~~~~ 1193 (1197)
T PRK09959       1176 NSVKEHIAELDQEIAVFC 1193 (1197)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            655555555555555443

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=96.70  E-value=0.0077  Score=54.75  Aligned_cols=62  Identities=21%  Similarity=0.313  Sum_probs=51.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHH
Q 035509           45 TVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIE  110 (140)
Q Consensus        45 Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~  110 (140)
                      +-..+.+.....+..+..++..+  |  .++..+|.+||+++++|+.++...|.++|..++.+...
T Consensus       838 l~~~~~~~l~~~~~~~~~~~~~~--~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~~  899 (921)
T PRK15347        838 LNSKLYQSLLLLLAQIEQAVENQ--E--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEIL  899 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCH--H--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCCC
Confidence            44555566678888888888754  4  89999999999999999999999999999998877543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		2e-10
4euk_B	159	Crystal Structure Length = 159		9e-10
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		2e-08
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		5e-08

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%)
Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           ME   + +Q     +S   E  L+ QF+QL+ +  E++P F  + VSL+F ++ +I+  L
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60
Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
                +  ID+  ++  +H FKG   SIGA +V       R  C+  NI+  +  L++VK
Sbjct: 61  SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120
Query: 121 VEQETLKAKLDSYFQLVKQ 139
            E   +K KL++  +L +Q
Sbjct: 121 QEYLLVKNKLETLLRLEQQ 139

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 15  QSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNAL 74
           +S   E IL+ QF+QL+ +  E +P F    V+L+FQ++ +I+  L     +  +D+  +
Sbjct: 20  KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 79
Query: 75  EKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYF 134
           +  +H  KG   SIGA +V       R+ C+  N+E     L++VK E   +K +L++ F
Sbjct: 80  DPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLF 139
Query: 135 QLVKQ 139
           +L +Q
Sbjct: 140 KLEQQ 144

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDD--PAFAEDTVSLYFQETTKIIA 58
           M    L +Q+  +  S     ++++QF QL+ M  ED   P F  + V+L+  +  +II+
Sbjct: 1   MAAAALREQLNALLSSMFASGLVDEQFQQLQ-MLQEDGGTPGFVAEVVTLFCDDADRIIS 59
Query: 59  TLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEK 118
            L     +  +D++ ++  +H  KG   S+GA KV     + R  C + N +G   AL  
Sbjct: 60  ELAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAV 119
Query: 119 VKVEQETLKAKLDS 132
           V+ E   L+ K  +
Sbjct: 120 VRNEFYDLRNKFQT 133

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 6   LHQQIATMRQSFLDEEILNDQFIQLESMATEDD-PAFAEDTVSLYFQETTKII---ATLE 61
           L  Q+  +  S   + ++++QF QL+ +  E   P F  + V+L+  +  +II   ATL 
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 62  EEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKV 121
           E+ V   ++++ ++  +H  KG   S+GA KV     + R  C + + +G   AL  V+ 
Sbjct: 66  EQPV---VNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122
Query: 122 EQETLKAKLDSYFQLVKQ 139
           +   L+ K  +  QL +Q
Sbjct: 123 DFYDLRNKFQTMLQLEQQ 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	8e-31
3us6_A	153	Histidine-containing phosphotransfer protein type	3e-30
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	4e-07
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	4e-05

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  106 bits (267), Expect = 8e-31
 Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 6   LHQQIATMRQSFLDEEILNDQFIQLESMATED-DPAFAEDTVSLYFQETTKIIATLEEEF 64
           L  Q+  +  S   + ++++QF QL+ +  E   P F  + V+L+  +  +II  +    
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65

Query: 65  VKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQE 124
            +  ++++ ++  +H  KG   S+GA KV     + R  C + + +G   AL  V+ +  
Sbjct: 66  EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125

Query: 125 TLKAKLDSYFQLVKQ 139
            L+ K  +  QL +Q
Sbjct: 126 DLRNKFQTMLQLEQQ 140

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  105 bits (264), Expect = 3e-30
 Identities = 43/139 (30%), Positives = 74/139 (53%)

Query: 1   MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATL 60
           ME   + +Q     +S   E  L+ QF+QL+ +  E++P F  + VSL+F ++ +I+  L
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60

Query: 61  EEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVK 120
                +  ID+  ++  +H FKG   SIGA +V       R  C+  NI+  +  L++VK
Sbjct: 61  SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120

Query: 121 VEQETLKAKLDSYFQLVKQ 139
            E   +K KL++  +L +Q
Sbjct: 121 QEYLLVKNKLETLLRLEQQ 139

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 13/117 (11%), Positives = 40/117 (34%), Gaps = 2/117 (1%)

Query: 15  QSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNAL 74
            +   E I      ++ SM  +DD  F++  +  +  +     A ++ + +    +   L
Sbjct: 2   STIPSEIINWTILNEIISMD-DDDSDFSKGLIIQFIDQAQTTFAQMQRQ-LDGEKNLTEL 59

Query: 75  EKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLD 131
           +   H  KG   ++G  ++     + +                   +  +++   ++
Sbjct: 60  DNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGIN 116

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 14  RQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNA 73
               ++ ++LN Q  ++E ++ E         + ++  E    I TL E    +      
Sbjct: 3   HHHHMNTDVLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLY 58

Query: 74  LEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSY 133
           L++  H  K    S GA ++               ++       ++       +    S+
Sbjct: 59  LKEISHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW 118

Query: 134 F 134
            
Sbjct: 119 T 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3us6_A	153	Histidine-containing phosphotransfer protein type	100.0
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	100.0
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.97
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.89
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.8
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.79
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.75
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.74
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.65
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.58
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.42
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.4
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.39
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	99.0
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.73
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	80.44

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=100.00  E-value=8.8e-40  Score=242.76  Aligned_cols=140  Identities=31%  Similarity=0.527  Sum_probs=135.9

Q ss_pred             CCChhHHHHHHHHHhcccchhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhh
Q 035509            1 MENNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHD   80 (140)
Q Consensus         1 ~~~~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~   80 (140)
                      |++.+|++++.++++|++++|+||++|++|++|+++++|+|+.++|..|++|+++.+..|+.|+..++.|+.+++++||+
T Consensus         1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~   80 (153)
T 3us6_A            1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQ   80 (153)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999766699999999999


Q ss_pred             hccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 035509           81 FKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS  140 (140)
Q Consensus        81 LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~~  140 (140)
                      |||||+||||.+|+.+|.++|.+|+.++.+++..++.+++.+|..++.+|++|+++|||+
T Consensus        81 LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~  140 (153)
T 3us6_A           81 FKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQI  140 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999974

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=100.00  E-value=5.6e-37  Score=226.14  Aligned_cols=138  Identities=24%  Similarity=0.474  Sum_probs=130.6

Q ss_pred             ChhHHHHHHHHHhcccchhhhHHHHHHHHhcccCCC-hhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhh
Q 035509            3 NNPLHQQIATMRQSFLDEEILNDQFIQLESMATEDD-PAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDF   81 (140)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~~~-~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~L   81 (140)
                      +++|++|+.+|+++++++|+||.+|++|++|+++++ |+|+.+||.+|++|+++.+..|+.|++.+++|+.+++.++|+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L   82 (149)
T 1yvi_A            3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL   82 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence            468999999999999999999977999999988888 9999999999999999999999999997666999999999999


Q ss_pred             ccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 035509           82 KGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS  140 (140)
Q Consensus        82 KGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~~  140 (140)
                      ||||+||||.+|+.+|.++|..++.++.+++..++.+++.+|..++.+|++|+++|||+
T Consensus        83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~  141 (149)
T 1yvi_A           83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQI  141 (149)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999984

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.97  E-value=2.7e-30  Score=194.06  Aligned_cols=118  Identities=16%  Similarity=0.280  Sum_probs=110.8

Q ss_pred             cccchhhhHH-HHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHH
Q 035509           16 SFLDEEILND-QFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVL   94 (140)
Q Consensus        16 ~~~~~~~lD~-~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~   94 (140)
                      ||.++|+||. +|.+|++|++++ |+|+.+||.+|++|++++|..|++|+. .++|+.+++.++|+|||||+||||.+|+
T Consensus         2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~   79 (167)
T 2r25_A            2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIA   79 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            5788999995 799999999887 999999999999999999999999998 3359999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCC------------HH--------------------------------HHHHHHHHHHHHHHHHHHHH
Q 035509           95 IEVNKARACCDNGN------------IE--------------------------------GGKAALEKVKVEQETLKAKL  130 (140)
Q Consensus        95 ~lc~~lE~~~~~~~------------~~--------------------------------~~~~~l~~l~~ef~~~~~~L  130 (140)
                      .+|.+||++|+.++            .+                                +|...|.+++.+|..++.+|
T Consensus        80 ~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~L  159 (167)
T 2r25_A           80 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL  159 (167)
T ss_dssp             HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999            44                                78999999999999999999


Q ss_pred             HHHHH
Q 035509          131 DSYFQ  135 (140)
Q Consensus       131 ~~~l~  135 (140)
                      ++|++
T Consensus       160 ~~~~~  164 (167)
T 2r25_A          160 SKYYN  164 (167)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            99975

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.89  E-value=5.7e-23  Score=146.25  Aligned_cols=114  Identities=15%  Similarity=0.134  Sum_probs=104.6

Q ss_pred             ccchhhhHHH-HHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHH
Q 035509           17 FLDEEILNDQ-FIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLI   95 (140)
Q Consensus        17 ~~~~~~lD~~-f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~   95 (140)
                      +.+.++||.. +.+|..+   .|++|+.+++..|++++++.+..|+.++..+  |+..+++.||+|||||+|+|+.+|+.
T Consensus         6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~   80 (125)
T 2a0b_A            6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ   80 (125)
T ss_dssp             CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3456778844 6677666   7899999999999999999999999999975  99999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509           96 EVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQ  135 (140)
Q Consensus        96 lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~  135 (140)
                      +|..+|..++.++.+++..++..|..+|.+++.+|+.|+.
T Consensus        81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~  120 (125)
T 2a0b_A           81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA  120 (125)
T ss_dssp             HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.80  E-value=2e-21  Score=138.47  Aligned_cols=105  Identities=13%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             HHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhc
Q 035509           27 FIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDN  106 (140)
Q Consensus        27 f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~  106 (140)
                      +..|.+|+++.||+++.+++..|+++++++|..|+.+...+  |+..+.+.+|+|||||+|+||.+|+.+|.++|..+|.
T Consensus        14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~   91 (120)
T 1y6d_A           14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA   91 (120)
T ss_dssp             TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence            44566777778999999999999999999999999987654  7888999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509          107 GNIEGGKAALEKVKVEQETLKAKLDSY  133 (140)
Q Consensus       107 ~~~~~~~~~l~~l~~ef~~~~~~L~~~  133 (140)
                      |+...+......+...+.+++..++.+
T Consensus        92 g~~~~~~~~~~~l~~~l~~~~d~l~~~  118 (120)
T 1y6d_A           92 NQLQEQGMETSEMLALLHITRDAYRSW  118 (120)
T ss_dssp             HHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred             CChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence            988755555555555555566665554

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.79  E-value=1.4e-18  Score=123.53  Aligned_cols=113  Identities=9%  Similarity=0.167  Sum_probs=98.5

Q ss_pred             cchhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHH
Q 035509           18 LDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEV   97 (140)
Q Consensus        18 ~~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc   97 (140)
                      +|..++|-+  .+.++ -.|++++..+|+.+|+++.|+.+..|+.++..+  |++.+.+.+|+|||||+++||++|..+|
T Consensus         1 ~~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~   75 (119)
T 3myf_A            1 FDLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC   75 (119)
T ss_dssp             -CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             CCccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            355667733  33333 237899999999999999999999999999976  9999999999999999999999999999


Q ss_pred             HHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509           98 NKARACCDNGN-IEGGKAALEKVKVEQETLKAKLDSYFQ  135 (140)
Q Consensus        98 ~~lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~~L~~~l~  135 (140)
                      ..+|..++.|. .+.....+..+..+...+..+++.|+.
T Consensus        76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~  114 (119)
T 3myf_A           76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS  114 (119)
T ss_dssp             HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999985 578888999999999999999999986

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.75  E-value=2.6e-18  Score=121.16  Aligned_cols=100  Identities=13%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             hhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHH
Q 035509           21 EILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKA  100 (140)
Q Consensus        21 ~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~l  100 (140)
                      +.+|-.  .|..+ ..|+|+|+.+|+.+|++++++.+..|..+  .  .|+   +++||+|||||+||||.+|+.+|.++
T Consensus         9 ~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~--~~~---~~~aH~LKGsA~~iGA~~l~~~c~~l   78 (113)
T 2ooc_A            9 GAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--H--PGW---KDAVHTVKGAARGVGAFNLGEVCERC   78 (113)
T ss_dssp             CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--S--TTH---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--h--HHH---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            446622  34443 44789999999999999999999999988  2  365   79999999999999999999999999


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509          101 RACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQ  135 (140)
Q Consensus       101 E~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~  135 (140)
                      |..++.     ....+..|+.++.++..+|..+++
T Consensus        79 E~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~  108 (113)
T 2ooc_A           79 EAGQES-----LEGVRTALDAALLDIAAYAHEQAL  108 (113)
T ss_dssp             HTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877     567889999999999999998775

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.74  E-value=7.8e-18  Score=120.48  Aligned_cols=109  Identities=15%  Similarity=0.193  Sum_probs=95.3

Q ss_pred             hhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHH
Q 035509           21 EILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKA  100 (140)
Q Consensus        21 ~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~l  100 (140)
                      +++|-+  .+..+ -.|+|++..+|+.+|+++.|+.+..|+.++..+  |++.+++.+|+|||||+++||.+|..+|..|
T Consensus        13 ~~~D~~--~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~L   87 (123)
T 3iqt_A           13 ATLDWQ--LALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQLI   87 (123)
T ss_dssp             GTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred             CccCHH--HHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            456622  33333 237899999999999999999999999999965  8999999999999999999999999999999


Q ss_pred             HHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509          101 RACCDNGNI-EGGKAALEKVKVEQETLKAKLDSYF  134 (140)
Q Consensus       101 E~~~~~~~~-~~~~~~l~~l~~ef~~~~~~L~~~l  134 (140)
                      |..++.|+. +.....+..+..+...+..+.++|+
T Consensus        88 E~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~  122 (123)
T 3iqt_A           88 EQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL  122 (123)
T ss_dssp             HHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999965 4788889999999999999998885

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.65  E-value=2.7e-16  Score=111.42  Aligned_cols=88  Identities=14%  Similarity=0.181  Sum_probs=80.4

Q ss_pred             CChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 035509           37 DDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAAL  116 (140)
Q Consensus        37 ~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l  116 (140)
                      +.+..-.+++.+|++..++.+..|+.++..+  |+..++..||+||||++++|+..++.+|.++|..++.++.+.+...+
T Consensus        28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i  105 (116)
T 1sr2_A           28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI  105 (116)
T ss_dssp             HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3456778899999999999999999999976  99999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHH
Q 035509          117 EKVKVEQETL  126 (140)
Q Consensus       117 ~~l~~ef~~~  126 (140)
                      ..|+..+..+
T Consensus       106 ~~L~~~l~~L  115 (116)
T 1sr2_A          106 SDIDSYVKSL  115 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888876654

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.58  E-value=5.1e-15  Score=102.01  Aligned_cols=91  Identities=18%  Similarity=0.268  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhc------CCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHh---hcCCHHHH
Q 035509           42 AEDTVSLYFQETTKIIATLEEEFVK------DPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACC---DNGNIEGG  112 (140)
Q Consensus        42 v~~Li~~fl~d~~~~l~~l~~Al~~------~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~---~~~~~~~~  112 (140)
                      +.+++..|++++++++..|+.++..      +..++..+.+.+|+|||||+++|+..+..+|..+|...   +.+.....
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~   82 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT   82 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4689999999999999999999851      12367899999999999999999999999999999875   77887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 035509          113 KAALEKVKVEQETLKAKLDS  132 (140)
Q Consensus       113 ~~~l~~l~~ef~~~~~~L~~  132 (140)
                      ..+++.+...+..++..+..
T Consensus        83 ~~~~~~l~~~~d~l~~~l~~  102 (105)
T 1tqg_A           83 SDLLDKIFAGVDMITRMVDK  102 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88889998888888777764

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.42  E-value=3.6e-13  Score=97.59  Aligned_cols=91  Identities=19%  Similarity=0.289  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhc------CCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHh---hcCCHHHHH
Q 035509           43 EDTVSLYFQETTKIIATLEEEFVK------DPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACC---DNGNIEGGK  113 (140)
Q Consensus        43 ~~Li~~fl~d~~~~l~~l~~Al~~------~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~---~~~~~~~~~  113 (140)
                      .+++..|++++++.|..|..++..      +..++..+.+.+|+|||||+++|+..++.+|..+|...   |.|......
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~   82 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   82 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            478999999999999999999841      23468899999999999999999999999999999864   677666556


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 035509          114 AALEKVKVEQETLKAKLDSY  133 (140)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~~~  133 (140)
                      .+++.+...++.+...+..+
T Consensus        83 ~l~~~l~~~~D~l~~~l~~~  102 (139)
T 2ld6_A           83 DLLDKIFAGVDMITRMVDKI  102 (139)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66777777777666666554

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.40  E-value=5.4e-13  Score=97.47  Aligned_cols=91  Identities=16%  Similarity=0.333  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhc---C---CCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHHHHH
Q 035509           43 EDTVSLYFQETTKIIATLEEEFVK---D---PIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIEGGK  113 (140)
Q Consensus        43 ~~Li~~fl~d~~~~l~~l~~Al~~---~---~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~~~~  113 (140)
                      .+++..|+++++++|..|+.++..   +   ..++..+.+.+|+|||||+++|+..+..+|-.+|..   .|.+......
T Consensus         6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~   85 (146)
T 1i5n_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (146)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            378999999999999999999932   1   124589999999999999999999999999999987   7788766556


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 035509          114 AALEKVKVEQETLKAKLDSY  133 (140)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~~~  133 (140)
                      .+++.+...++.++..+..+
T Consensus        86 ~l~~~l~~~~D~l~~~l~~~  105 (146)
T 1i5n_A           86 DIINLFLETKDIMQEQLDAY  105 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666666666665555443

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.39  E-value=7.5e-13  Score=92.43  Aligned_cols=90  Identities=18%  Similarity=0.287  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhc---CCC---CHHHHHHHhhhhccchhhcChHHHHHHHHHHHH---HhhcCCHHHHH
Q 035509           43 EDTVSLYFQETTKIIATLEEEFVK---DPI---DYNALEKCLHDFKGLCVSIGASKVLIEVNKARA---CCDNGNIEGGK  113 (140)
Q Consensus        43 ~~Li~~fl~d~~~~l~~l~~Al~~---~~~---D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~---~~~~~~~~~~~  113 (140)
                      .+++..|+++++++|..|..++..   ++.   ++..+.+.+|+|||||+++|+..++.+|-.+|.   ..+.+......
T Consensus         5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~   84 (113)
T 2lch_A            5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS   84 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            488999999999999999999842   122   356799999999999999999999999999996   46777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 035509          114 AALEKVKVEQETLKAKLDS  132 (140)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~~  132 (140)
                      .+++.+...++.+...+..
T Consensus        85 ~l~~~l~~~~d~l~~~l~~  103 (113)
T 2lch_A           85 DLIDKVKKKLDMVTRELDK  103 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7888888877777766654

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=99.00  E-value=1e-09  Score=80.05  Aligned_cols=91  Identities=18%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhh---cCCCC---HHHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHHHH
Q 035509           42 AEDTVSLYFQETTKIIATLEEEFV---KDPID---YNALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIEGG  112 (140)
Q Consensus        42 v~~Li~~fl~d~~~~l~~l~~Al~---~~~~D---~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~~~  112 (140)
                      ..+++..|+++++++|..|...+.   .++.|   ...+.+.+|+|||||+.+|...+..+|-.+|..   .+.+...--
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~   88 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD   88 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            468999999999999999999874   23323   458999999999999999999999999999985   466655444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 035509          113 KAALEKVKVEQETLKAKLDS  132 (140)
Q Consensus       113 ~~~l~~l~~ef~~~~~~L~~  132 (140)
                      ..+++.+-..++.+...+..
T Consensus        89 ~~l~dlll~~~D~l~~lv~~  108 (144)
T 3kyj_A           89 GEIVEILLFASDTLRAMLEE  108 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555555555554444443

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.73  E-value=3.6e-08  Score=76.22  Aligned_cols=88  Identities=16%  Similarity=0.308  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhc---CCCC---HHHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHHHHH
Q 035509           43 EDTVSLYFQETTKIIATLEEEFVK---DPID---YNALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIEGGK  113 (140)
Q Consensus        43 ~~Li~~fl~d~~~~l~~l~~Al~~---~~~D---~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~~~~  113 (140)
                      .++++.|++++.++|..|+..+..   ++.|   ...+.+.+|+|||||+.+|...+..+|-.+|..   .|.|...--.
T Consensus         6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~   85 (225)
T 2lp4_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (225)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            367899999999999999998753   3334   457889999999999999999999999999975   5666544334


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 035509          114 AALEKVKVEQETLKAKL  130 (140)
Q Consensus       114 ~~l~~l~~ef~~~~~~L  130 (140)
                      .+++.+-..++.+..-+
T Consensus        86 ~~~~ll~~~~D~l~~~l  102 (225)
T 2lp4_A           86 DIINLFLETKDIMQEQL  102 (225)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444443333

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=80.44  E-value=2.2  Score=27.11  Aligned_cols=44  Identities=14%  Similarity=0.215  Sum_probs=37.9

Q ss_pred             chhhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHH
Q 035509           19 DEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEE   62 (140)
Q Consensus        19 ~~~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~   62 (140)
                      +...+++.+.+++.|.++-|..|+..++..|=.+.++.+..|=+
T Consensus         9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE   52 (71)
T 2di0_A            9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE   52 (71)
T ss_dssp             SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            44556777999999999999999999999999999999887743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	8e-26
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	3e-09
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	1e-07
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	3e-04
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	5e-04
d2ooca1	104	a.24.10.6 (A:8-111) Histidine phosphotransferase S	0.004

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 92.7 bits (230), Expect = 8e-26
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 1/136 (0%)

Query: 5   PLHQQIATMRQSFLDEEILNDQFIQLESMATE-DDPAFAEDTVSLYFQETTKIIATLEEE 63
            L  Q+  +  S   + ++++QF QL+ +  E   P F  + V+L+  +  +II  +   
Sbjct: 4   ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 63

Query: 64  FVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQ 123
             +  ++++ ++  +H  KG   S+GA KV     + R  C + + +G   AL  V+ + 
Sbjct: 64  LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 123

Query: 124 ETLKAKLDSYFQLVKQ 139
             L+ K  +  QL +Q
Sbjct: 124 YDLRNKFQTMLQLEQQ 139

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 49.2 bits (117), Expect = 3e-09
 Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 2/112 (1%)

Query: 15  QSFLDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNAL 74
              ++ ++  ++  +      E+    A    +L+       +  L  E      D+ AL
Sbjct: 6   LQLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAAL 63

Query: 75  EKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETL 126
            +  H  KG+   +                   ++ G +  +  +    ++L
Sbjct: 64  AQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSL 115

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 2/107 (1%)

Query: 29  QLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSI 88
            LE       P    D ++++ +     ++ LE        D   + +  H  KG   S+
Sbjct: 11  MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSV 68

Query: 89  GASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQ 135
           G   +     + ++       +     +E++K E       L ++  
Sbjct: 69  GLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA 115

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 18  LDEEILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKC 77
           ++ ++LN Q  ++E ++ E         + ++  E    I TL E    +      L++ 
Sbjct: 1   MNTDVLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEI 56

Query: 78  LHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSY 133
            H  K    S GA ++               ++       ++       +    S+
Sbjct: 57  SHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW 112

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 16 SFLDEEILN-DQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNAL 74
          S +  EI+N     ++ SM  +DD  F++  +  +  +     A ++ +   +  +   L
Sbjct: 1  STIPSEIINWTILNEIISMD-DDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK-NLTEL 58

Query: 75 EKCLHDFKGLCVSIGASKV 93
          +   H  KG   ++G  ++
Sbjct: 59 DNLGHFLKGSSAALGLQRI 77

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 32.7 bits (74), Expect = 0.004
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 17/105 (16%)

Query: 29  QLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSI 88
            LE      D A  ++ ++L+ ++       L+         +   +  +H  KG    +
Sbjct: 7   YLEGF-AAGDFAVVDEVLALFREQAALWAPMLD-------PTHPGWKDAVHTVKGAARGV 58

Query: 89  GASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSY 133
           GA  +         C      E G+ +LE V+   +     + +Y
Sbjct: 59  GAFNL------GEVC---ERCEAGQESLEGVRTALDAALLDIAAY 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	100.0
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.9
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.89
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.85
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.81
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.7
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.04
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	98.97
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	88.0

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=100.00  E-value=8.3e-35  Score=211.23  Aligned_cols=137  Identities=24%  Similarity=0.478  Sum_probs=130.4

Q ss_pred             hhHHHHHHHHHhcccchhhhHHHHHHHHhcccC-CChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhc
Q 035509            4 NPLHQQIATMRQSFLDEEILNDQFIQLESMATE-DDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFK   82 (140)
Q Consensus         4 ~~l~~~~~~~~~~~~~~~~lD~~f~~L~~L~~~-~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LK   82 (140)
                      ++|+.++.+++++++++|++|.+|.++..|.++ ++|+|+.+|+..|++++++.|..|++++..++.||+.++..||+||
T Consensus         3 ~~l~~~~~~~~~~~~~~g~lD~~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~LK   82 (142)
T d1yvia1           3 AALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLK   82 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHhcccccHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            689999999999999999999999999999875 6789999999999999999999999999876679999999999999


Q ss_pred             cchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 035509           83 GLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQLVKQS  140 (140)
Q Consensus        83 GSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~~~~~~  140 (140)
                      |||+|+||.+++.+|.++|.+++.++.+++..++..|+.+|..++.+|++|+++++||
T Consensus        83 Gss~~lGa~~l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~~~~qi  140 (142)
T d1yvia1          83 GSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQI  140 (142)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999999999986

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=5.9e-24  Score=148.02  Aligned_cols=112  Identities=15%  Similarity=0.151  Sum_probs=103.1

Q ss_pred             chhhhHHH-HHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHH
Q 035509           19 DEEILNDQ-FIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEV   97 (140)
Q Consensus        19 ~~~~lD~~-f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc   97 (140)
                      .+++||.. +.++...   .||+++.+++..|++++|+.+..|+.++.++  |+..+++.+|+|||||+++||.+++.+|
T Consensus         3 ~e~~lD~~~L~~l~~~---~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~--d~~~~~~~aH~LKgsa~~~G~~~l~~~~   77 (118)
T d2a0ba_           3 SEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQLG   77 (118)
T ss_dssp             HHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            35667733 5566555   7899999999999999999999999999976  9999999999999999999999999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509           98 NKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYFQ  135 (140)
Q Consensus        98 ~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l~  135 (140)
                      .++|..++.++.+++..++..|+.+|..+..+|+.|+.
T Consensus        78 ~~lE~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l~  115 (118)
T d2a0ba_          78 QQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA  115 (118)
T ss_dssp             HHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999985

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=8.8e-23  Score=150.95  Aligned_cols=116  Identities=16%  Similarity=0.302  Sum_probs=102.4

Q ss_pred             cchhhhHHH-HHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHH
Q 035509           18 LDEEILNDQ-FIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIE   96 (140)
Q Consensus        18 ~~~~~lD~~-f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~l   96 (140)
                      .-.++||.. |.+|..| ++++|+|+.+||..|+++++..+..|++|+.+. .|+.+++.+||+|||||+||||.+++.+
T Consensus         3 ~p~~~id~~~l~~l~~m-~~~d~~f~~~li~~F~~~~~~~~~~l~~al~~~-~d~~~l~~~aH~lKgss~~~G~~~~~~~   80 (166)
T d2r25a1           3 IPSEIINWTILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGE-KNLTELDNLGHFLKGSSAALGLQRIAWV   80 (166)
T ss_dssp             CCSCSSCHHHHHHHHHT-TTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcccccCHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            345688844 9999999 467899999999999999999999999999652 4999999999999999999999999999


Q ss_pred             HHHHHHHhhcCC--------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 035509           97 VNKARACCDNGN--------------------------------------------IEGGKAALEKVKVEQETLKAKLDS  132 (140)
Q Consensus        97 c~~lE~~~~~~~--------------------------------------------~~~~~~~l~~l~~ef~~~~~~L~~  132 (140)
                      |..||++++.++                                            +..+...+.+.+..|..++..|..
T Consensus        81 ~~~ie~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~l~~I~~~L~~a~d~~~~a~~~L~~  160 (166)
T d2r25a1          81 CERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSK  160 (166)
T ss_dssp             HHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccccchhHHHHHHHHHHHHHHHHHhhhhcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988653                                            234678899999999999999999


Q ss_pred             HHH
Q 035509          133 YFQ  135 (140)
Q Consensus       133 ~l~  135 (140)
                      |+.
T Consensus       161 ~~~  163 (166)
T d2r25a1         161 YYN  163 (166)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            975

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.85  E-value=2.3e-23  Score=144.07  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=100.3

Q ss_pred             chhhhHHH-HHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHH
Q 035509           19 DEEILNDQ-FIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEV   97 (140)
Q Consensus        19 ~~~~lD~~-f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc   97 (140)
                      ++++||.. +++|...   .|++++.+|+..|+++++..+..|++++..+  |++.+++.||+|||||+|+||.+|+.+|
T Consensus         2 ~~~lld~~~l~~L~~~---~G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~--d~~~l~~~aH~LKGsa~~~Ga~~L~~~~   76 (114)
T d1y6da_           2 NTDVLNQQKIEELSAE---IGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERA   76 (114)
T ss_dssp             CCTTTTTTHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            45677743 6666544   6789999999999999999999999999975  9999999999999999999999999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035509           98 NKARACCDNGNIEGGKAALEKVKVEQETLKAKLDSYF  134 (140)
Q Consensus        98 ~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~~L~~~l  134 (140)
                      .+||..++.++.+.+...+..+...+.+++.+++.|.
T Consensus        77 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~t~~a~r~w~  113 (114)
T d1y6da_          77 IAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWT  113 (114)
T ss_dssp             HHHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999998873

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2e-21  Score=135.60  Aligned_cols=86  Identities=14%  Similarity=0.178  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 035509           39 PAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKARACCDNGNIEGGKAALEK  118 (140)
Q Consensus        39 ~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~~~~~~~~~~~~~l~~  118 (140)
                      +.|+.+++.+|++++|..+..|+.|++++  |+..+++.||+|||||+|+||.+++.+|..||..++.++.+.+..++.+
T Consensus        30 ~~~~~~~~~lF~~~~p~~l~~L~~a~~~~--D~~~l~~~aH~LKGs~~~~Ga~~l~~~~~~lE~~~~~~~~~~~~~ll~~  107 (116)
T d1sr2a_          30 QLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISD  107 (116)
T ss_dssp             HHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            45888999999999999999999999976  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 035509          119 VKVEQETL  126 (140)
Q Consensus       119 l~~ef~~~  126 (140)
                      |+.++.++
T Consensus       108 le~~~~~l  115 (116)
T d1sr2a_         108 IDSYVKSL  115 (116)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988765

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.70  E-value=7e-18  Score=115.72  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=64.9

Q ss_pred             hhhHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHHHhhcCCCCHHHHHHHhhhhccchhhcChHHHHHHHHHH
Q 035509           21 EILNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEEEFVKDPIDYNALEKCLHDFKGLCVSIGASKVLIEVNKA  100 (140)
Q Consensus        21 ~~lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~Al~~~~~D~~~l~~~aH~LKGSSasiGA~~l~~lc~~l  100 (140)
                      |.||  |+.|.++.. |+++|+.+|+.+|+++++..+..+    .   .|++.+++.+|+|||||+||||.+|+.+|.+|
T Consensus         1 gaiD--~~~L~~~~g-gd~~l~~~ll~~F~e~~~~~~~~l----~---~d~~~~~~~aH~LKGsa~~iGa~~L~~~a~~l   70 (104)
T d2ooca1           1 GAVD--FAYLEGFAA-GDFAVVDEVLALFREQAALWAPML----D---PTHPGWKDAVHTVKGAARGVGAFNLGEVCERC   70 (104)
T ss_dssp             CCSC--HHHHHHHTT-TCHHHHHHHHHHHHHHHHHHGGGC----S---TTSTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CccC--HHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHH----c---cCHHHHHHHHHHHHhHHHHcCHHHHHHHHHHH
Confidence            3455  446667753 689999999999999999987554    2   27889999999999999999999999999999


Q ss_pred             HHHhhcC
Q 035509          101 RACCDNG  107 (140)
Q Consensus       101 E~~~~~~  107 (140)
                      |..++.+
T Consensus        71 E~~~~~~   77 (104)
T d2ooca1          71 EAGQESL   77 (104)
T ss_dssp             HTTSSCH
T ss_pred             HHHHHcc
Confidence            9998763

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=4.4e-10  Score=75.53  Aligned_cols=89  Identities=19%  Similarity=0.345  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhc---CCCC---HHHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHHHHH
Q 035509           43 EDTVSLYFQETTKIIATLEEEFVK---DPID---YNALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIEGGK  113 (140)
Q Consensus        43 ~~Li~~fl~d~~~~l~~l~~Al~~---~~~D---~~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~~~~  113 (140)
                      .++++.|++++++++..|+..+..   ++.|   ...+.+.+|+|||||+.+|...++.+|..+|.+   .+.+....-.
T Consensus         4 ~E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~~~~~~~~~~~   83 (105)
T d1tqga_           4 MEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   83 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            378999999999999999998842   2233   457889999999999999999999999999975   5555444334


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 035509          114 AALEKVKVEQETLKAKLD  131 (140)
Q Consensus       114 ~~l~~l~~ef~~~~~~L~  131 (140)
                      ..++.+...++.+...++
T Consensus        84 ~~~~~l~~~~d~l~~~l~  101 (105)
T d1tqga_          84 DLLDKIFAGVDMITRMVD  101 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555554444443

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.97  E-value=1.2e-09  Score=75.50  Aligned_cols=87  Identities=16%  Similarity=0.298  Sum_probs=64.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhh---cCCCCH---HHHHHHhhhhccchhhcChHHHHHHHHHHHHH---hhcCCHHHHHH
Q 035509           44 DTVSLYFQETTKIIATLEEEFV---KDPIDY---NALEKCLHDFKGLCVSIGASKVLIEVNKARAC---CDNGNIEGGKA  114 (140)
Q Consensus        44 ~Li~~fl~d~~~~l~~l~~Al~---~~~~D~---~~l~~~aH~LKGSSasiGA~~l~~lc~~lE~~---~~~~~~~~~~~  114 (140)
                      ++++.|++++.+++..|+..+.   .++.|.   ..+.+.+|+|||||+.+|...+..+|..+|..   .+.+...--..
T Consensus         4 e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~~   83 (128)
T d1i5na_           4 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTD   83 (128)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            5789999999999999999873   333344   48889999999999999999999999999985   44554433344


Q ss_pred             HHHHHHHHHHHHHHHH
Q 035509          115 ALEKVKVEQETLKAKL  130 (140)
Q Consensus       115 ~l~~l~~ef~~~~~~L  130 (140)
                      .++.+...++.++..+
T Consensus        84 ~~~~l~~~~d~l~~~l   99 (128)
T d1i5na_          84 IINLFLETKDIMQEQL   99 (128)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444433

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.28  Score=29.14  Aligned_cols=40  Identities=15%  Similarity=0.307  Sum_probs=35.2

Q ss_pred             hHHHHHHHHhcccCCChhHHHHHHHHHHHhHHHHHHHHHH
Q 035509           23 LNDQFIQLESMATEDDPAFAEDTVSLYFQETTKIIATLEE   62 (140)
Q Consensus        23 lD~~f~~L~~L~~~~~~~fv~~Li~~fl~d~~~~l~~l~~   62 (140)
                      +|..+.+++.|-++-|+.|+..+++-|-.|+++.+..|=+
T Consensus         6 l~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe   45 (63)
T d2di0a1           6 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE   45 (63)
T ss_dssp             HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            5566889999999999999999999999999999987743