Citrus Sinensis ID: 035516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
MAAGKPTSKGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV
ccccccccccccEEEEcccccEEEEEEccEEEEEcccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcc
cccccccccccEEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHcccccccHHHHHHHcccHHHHccccccccccEEEEcccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHc
maagkptskgqawfcttglpsdivievdemsfhlhkfplmsksrKLHQLITEQENKPTMAWKQEKETEieeeegeeeeeatchisipedfpggseTFEMVAKFCYGVKmelsssnvaplrcaGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV
maagkptskgqawfCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITeqenkptmawkQEKETEIEeeegeeeeeatchiSIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV
MAAGKPTSKGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQeketeieeeegeeeeeATCHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV
***********AWFCTTGLPSDIVIEVDEMSFHLHKFPLM*****************************************************SETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVF*****************
*************FCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQL*********************************HISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV
**********QAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKP************************CHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV
*********GQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQ**************************ATCHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAGKPTSKGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query167 2.2.26 [Sep-21-2011]
Q94A73 668 BTB/POZ domain-containing yes no 0.988 0.247 0.614 1e-57
Q8LPQ3 569 BTB/POZ domain-containing no no 0.814 0.239 0.575 2e-44
Q9S9Q9 665 BTB/POZ domain-containing no no 0.820 0.206 0.566 1e-43
Q9LYW0 592 BTB/POZ domain-containing no no 0.808 0.228 0.487 7e-37
Q9FMF5 746 Root phototropism protein no no 0.796 0.178 0.452 4e-36
Q9FYC8 651 BTB/POZ domain-containing no no 0.826 0.211 0.408 1e-31
Q9FNB3 591 Putative BTB/POZ domain-c no no 0.778 0.219 0.442 2e-30
Q9LFU0 607 Putative BTB/POZ domain-c no no 0.808 0.222 0.405 6e-29
Q8H1D3 571 BTB/POZ domain-containing no no 0.778 0.227 0.402 5e-27
Q9C9Z7 617 BTB/POZ domain-containing no no 0.742 0.200 0.413 8e-27
>sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2 Back     alignment and function desciption
 Score =  221 bits (564), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 140/187 (74%), Gaps = 22/187 (11%)

Query: 1   MAAGKPTSKGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPT-- 58
           MA+ K TSKGQAWFCTTGLPSDI IEVD+M+FHLHKFPLMSKSRKLH+LITEQE + +  
Sbjct: 1   MASEKSTSKGQAWFCTTGLPSDIEIEVDDMTFHLHKFPLMSKSRKLHRLITEQETRSSSS 60

Query: 59  MAWKQEKETEIEEEEGEEE-------------------EEATCHISIPEDFPGGSETFEM 99
           MA     + ++EE + + +                   E    HI + EDFPG SE+FEM
Sbjct: 61  MALITVIDPKVEETDKKGKGHEIEDDKEEEEVEEQEIEENGYPHIKL-EDFPGSSESFEM 119

Query: 100 VAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRA 159
           VAKFCYGVKM+LS+S V PLRCA E+LEMTEE++ DNLISKTERFLS SV+KSL++SI+A
Sbjct: 120 VAKFCYGVKMDLSASTVVPLRCAAEHLEMTEEYSPDNLISKTERFLSHSVYKSLRESIKA 179

Query: 160 LKSCENV 166
           LK+CE+V
Sbjct: 180 LKACESV 186
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LPQ3|Y3084_ARATH BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2 Back     alignment and function description
>sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description
>sp|Q9LFU0|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1 Back     alignment and function description
>sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
298205065 593 unnamed protein product [Vitis vinifera] 0.982 0.276 0.718 1e-60
225468765 635 PREDICTED: BTB/POZ domain-containing pro 0.982 0.258 0.718 2e-60
147791853 723 hypothetical protein VITISV_027631 [Viti 0.982 0.226 0.718 2e-60
255562757 646 protein binding protein, putative [Ricin 0.964 0.249 0.736 4e-60
224094598 655 predicted protein [Populus trichocarpa] 0.952 0.242 0.730 1e-59
356498468 655 PREDICTED: BTB/POZ domain-containing pro 0.964 0.245 0.670 5e-59
356561275 648 PREDICTED: BTB/POZ domain-containing pro 0.988 0.254 0.644 7e-57
358343997 661 Root phototropism protein [Medicago trun 0.964 0.243 0.684 2e-56
10177537 597 photoreceptor-interacting protein-like [ 0.856 0.239 0.668 5e-56
15146318 668 AT5g66560/K1F13_23 [Arabidopsis thaliana 0.988 0.247 0.614 5e-56
>gi|298205065|emb|CBI38361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 140/167 (83%), Gaps = 3/167 (1%)

Query: 1   MAAGKPTSKGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMA 60
           MAA K + +GQAWFCTTGLPSDIVIEVD+M+FHLHKFPLMSKSRKLH+LITEQE  PT  
Sbjct: 1   MAAEKASGRGQAWFCTTGLPSDIVIEVDDMTFHLHKFPLMSKSRKLHELITEQETNPTR- 59

Query: 61  WKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLR 120
             Q   +  EEE  E E+E  CHIS+P DFPGGSET E  AKFCYGVK+ELS+SNVAPLR
Sbjct: 60  -NQSNFSAEEEEYDEIEQEQYCHISLP-DFPGGSETLETAAKFCYGVKIELSASNVAPLR 117

Query: 121 CAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENVV 167
           CAGE+LEMTEE++EDNLIS+TER+LSQSV  S+K+SI+ LKSCE ++
Sbjct: 118 CAGEFLEMTEEYSEDNLISRTERYLSQSVLISVKESIKTLKSCEGLM 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225468765|ref|XP_002272552.1| PREDICTED: BTB/POZ domain-containing protein At5g66560-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147791853|emb|CAN61829.1| hypothetical protein VITISV_027631 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255562757|ref|XP_002522384.1| protein binding protein, putative [Ricinus communis] gi|223538462|gb|EEF40068.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224094598|ref|XP_002310186.1| predicted protein [Populus trichocarpa] gi|222853089|gb|EEE90636.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356498468|ref|XP_003518074.1| PREDICTED: BTB/POZ domain-containing protein At5g66560-like [Glycine max] Back     alignment and taxonomy information
>gi|356561275|ref|XP_003548908.1| PREDICTED: BTB/POZ domain-containing protein At5g66560-like [Glycine max] Back     alignment and taxonomy information
>gi|358343997|ref|XP_003636081.1| Root phototropism protein [Medicago truncatula] gi|355502016|gb|AES83219.1| Root phototropism protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|10177537|dbj|BAB10932.1| photoreceptor-interacting protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15146318|gb|AAK83642.1| AT5g66560/K1F13_23 [Arabidopsis thaliana] gi|24111403|gb|AAN46836.1| At5g66560/K1F13_23 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
TAIR|locus:2154920 668 AT5G66560 [Arabidopsis thalian 0.497 0.124 0.75 2.8e-53
TAIR|locus:2077992 569 AT3G50840 [Arabidopsis thalian 0.497 0.145 0.619 3.2e-42
TAIR|locus:2028160 665 AT1G30440 [Arabidopsis thalian 0.508 0.127 0.651 6.7e-40
TAIR|locus:2143558 592 AT5G03250 [Arabidopsis thalian 0.502 0.141 0.558 1.5e-34
TAIR|locus:2173418 746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.497 0.111 0.578 2.7e-33
TAIR|locus:2082132 651 AT3G44820 [Arabidopsis thalian 0.497 0.127 0.481 9e-30
TAIR|locus:2173204 591 AT5G13600 [Arabidopsis thalian 0.497 0.140 0.541 5.2e-29
TAIR|locus:2145387 607 DOT3 "DEFECTIVELY ORGANIZED TR 0.497 0.136 0.535 6.3e-27
TAIR|locus:2007564 634 AT1G03010 [Arabidopsis thalian 0.461 0.121 0.558 1.9e-26
TAIR|locus:2077763 617 AT3G08570 [Arabidopsis thalian 0.467 0.126 0.564 2.7e-26
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 332 (121.9 bits), Expect = 2.8e-53, Sum P(2) = 2.8e-53
 Identities = 63/84 (75%), Positives = 76/84 (90%)

Query:    83 HISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTE 142
             HI + EDFPG SE+FEMVAKFCYGVKM+LS+S V PLRCA E+LEMTEE++ DNLISKTE
Sbjct:   104 HIKL-EDFPGSSESFEMVAKFCYGVKMDLSASTVVPLRCAAEHLEMTEEYSPDNLISKTE 162

Query:   143 RFLSQSVFKSLKDSIRALKSCENV 166
             RFLS SV+KSL++SI+ALK+CE+V
Sbjct:   163 RFLSHSVYKSLRESIKALKACESV 186
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0009416 "response to light stimulus" evidence=IEA;ISS
TAIR|locus:2077992 AT3G50840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145387 DOT3 "DEFECTIVELY ORGANIZED TRIBUTARIES 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 7e-05
pfam00651101 pfam00651, BTB, BTB/POZ domain 0.003
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information 
 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 31/127 (24%)

Query: 22  DIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEAT 81
           D+ + V    FH HK  L + S     L                         + +E   
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALF----------------------SSDFKESDK 38

Query: 82  CHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKT 141
             I + +  P   E F  +  F Y  K++L   NV  L    +YL++        L+   
Sbjct: 39  SEIYLDDVSP---EDFRALLNFLYTGKLDLPEENVEELLELADYLQI------PGLVELC 89

Query: 142 ERFLSQS 148
           E FL + 
Sbjct: 90  EEFLLKL 96

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 167
PHA02790 480 Kelch-like protein; Provisional 99.94
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.93
PHA02713 557 hypothetical protein; Provisional 99.93
PHA03098 534 kelch-like protein; Provisional 99.89
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.87
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.78
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.49
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.35
KOG4591280 consensus Uncharacterized conserved protein, conta 98.97
KOG4682 488 consensus Uncharacterized conserved protein, conta 98.91
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.57
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.53
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 98.15
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.58
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.51
KOG2716 230 consensus Polymerase delta-interacting protein PDI 97.51
KOG2838 401 consensus Uncharacterized conserved protein, conta 97.12
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.83
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.82
KOG2838401 consensus Uncharacterized conserved protein, conta 96.56
KOG3473112 consensus RNA polymerase II transcription elongati 96.27
KOG0511516 consensus Ankyrin repeat protein [General function 94.74
KOG2714 465 consensus SETA binding protein SB1 and related pro 94.54
KOG0511 516 consensus Ankyrin repeat protein [General function 92.84
KOG2715210 consensus Uncharacterized conserved protein, conta 91.48
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 90.89
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 90.35
KOG3840 438 consensus Uncharaterized conserved protein, contai 90.03
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 86.81
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 86.33
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information 
Probab=99.94  E-value=3.7e-27  Score=212.59  Aligned_cols=120  Identities=13%  Similarity=0.072  Sum_probs=104.0

Q ss_pred             hhhhhhcCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEe--CC
Q 035516           11 QAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISI--PE   88 (167)
Q Consensus        11 ~~~~R~~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L--~~   88 (167)
                      .--+|.+|.+|||++.+ |++|+|||+|||++|+|||+||++++.++                      . .+|.+  . 
T Consensus        13 ~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es----------------------~-~~v~~~~~-   67 (480)
T PHA02790         13 ILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKN----------------------K-DPVTRVCL-   67 (480)
T ss_pred             HHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccc----------------------c-cceEEEec-
Confidence            34589999999976655 56999999999999999999999988651                      1 12333  4 


Q ss_pred             CCCCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHHHHhhhh
Q 035516           89 DFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCEN  165 (167)
Q Consensus        89 ~~~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~l~~~~~  165 (167)
                      +++  +++|+.||+|+|||++.|+.+||++|+.||.+|||+.      |++.|++||.+++  +.+||+.+++.++.
T Consensus        68 ~v~--~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l--~~~NCl~i~~~A~~  134 (480)
T PHA02790         68 DLD--IHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCINFILRDF--RKEYCVECYMMGIE  134 (480)
T ss_pred             CcC--HHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHHHHHHhhC--CcchHHHHHHHHHH
Confidence            665  8999999999999999999999999999999999999      9999999999999  48999999987653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-04
3b84_A119 Zinc finger and BTB domain-containing protein 48; 3e-04
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 27/109 (24%)

Query: 22  DIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEAT 81
           D  I + E  F  H+  L S S     +            +     +  +          
Sbjct: 24  DCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTS-------ENNVFLDQSQ---------- 66

Query: 82  CHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTE 130
             +         ++ F+ + +F Y   + L S NV  +  A +YL++ E
Sbjct: 67  --VK--------ADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEE 105
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.94
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.94
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.94
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.94
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.94
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.94
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.94
2vpk_A116 Myoneurin; transcription regulation, transcription 99.94
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.94
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.93
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.93
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.93
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.93
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.93
3hve_A 256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.93
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.93
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.92
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 99.92
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.89
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.89
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.66
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.49
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.44
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.38
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.89
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.83
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.81
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.32
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.26
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.46
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.57
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.86
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.39
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 94.89
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 94.34
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=9.7e-28  Score=172.80  Aligned_cols=104  Identities=20%  Similarity=0.290  Sum_probs=92.8

Q ss_pred             hhhcCCCeeEEEEEcC----eEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCC
Q 035516           14 FCTTGLPSDIVIEVDE----MSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPED   89 (167)
Q Consensus        14 ~R~~g~lcDvtI~V~g----~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~   89 (167)
                      +|+++.+|||+|.|+|    +.|++||.||+++|+||++||.+++.++                      . ..|.|+ +
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~----------------------~-~~i~l~-~   57 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV----------------------K-SEIHIP-D   57 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------------------------C-CEEEET-T
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC----------------------C-CeEEeC-C
Confidence            6889999999999998    9999999999999999999999876531                      3 679999 8


Q ss_pred             CCCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhh
Q 035516           90 FPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSV  149 (167)
Q Consensus        90 ~~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v  149 (167)
                      ++  +++|+.+++|+|||++.++.+|+.+++.+|++|+|+.      |++.|++||.+++
T Consensus        58 ~~--~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------L~~~c~~~l~~~l  109 (109)
T 2vkp_A           58 VE--PAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPA------LAKACVNFLETSL  109 (109)
T ss_dssp             SC--HHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHHHHHHHC
T ss_pred             CC--HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhhC
Confidence            86  8999999999999999999999999999999999999      9999999998764
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 167
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-06
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 7e-06
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 4e-06
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 36/132 (27%)

Query: 14  FCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEE 73
               G   D+VI VD   FH H+  L   S+    L                        
Sbjct: 22  MRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-------------------- 61

Query: 74  GEEEEEATCHISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFA 133
                  + H ++    P   +TF+ + ++ Y   ++  + ++  L  A E LE+     
Sbjct: 62  -------SQHYTLDFLSP---KTFQQILEYAYTATLQAKAEDLDDLLYAAEILEI----- 106

Query: 134 EDNLISKTERFL 145
            + L  +  + L
Sbjct: 107 -EYLEEQCLKML 117
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.94
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.94
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.11
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 98.02
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.44
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.2
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.57
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 96.17
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 95.39
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 89.42
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 87.76
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-28  Score=181.04  Aligned_cols=101  Identities=23%  Similarity=0.369  Sum_probs=93.7

Q ss_pred             hhhhhhcCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCC
Q 035516           11 QAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDF   90 (167)
Q Consensus        11 ~~~~R~~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~   90 (167)
                      ...+|++|.+||++|.|+|++|+|||.|||++|+||++||.++.                           .++.++ ++
T Consensus        19 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~---------------------------~~i~~~-~v   70 (121)
T d1buoa_          19 ANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS---------------------------QHYTLD-FL   70 (121)
T ss_dssp             HHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC---------------------------SEEEEC-SS
T ss_pred             HHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcc---------------------------ceeecC-CC
Confidence            45688999999999999999999999999999999999996532                           368899 88


Q ss_pred             CCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHH
Q 035516           91 PGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQ  147 (167)
Q Consensus        91 ~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~  147 (167)
                      +  +++|+.+++|+|||++.++.+|+.+++.||++|+|+.      |++.|.+||++
T Consensus        71 ~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~~L~~  119 (121)
T d1buoa_          71 S--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLKMLET  119 (121)
T ss_dssp             C--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred             C--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence            6  8999999999999999999999999999999999999      99999999965
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure