Citrus Sinensis ID: 035517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MRTDIEIQCRQEKSDRSEEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDDDKRTDHLEGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEICFSPQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEccccccccccHHHHcccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MRTDIEIQcrqeksdrseeqaentsvvspqkwscfdlnlneeascseEDDVLAKAaedddkrtdhlegstscstnnnerrSTVRQYVRskmprlrwtpdlhLSFVHAVerlggqekatPKLVLQLMNVRGLSIAHVKSHLQMYRSkkldeagqgeicfspq
Flexible Loop (DISEMBL)
mrtdieiqcrqeksdrseeqaentsvvspqkwsCFDLNLNEEASCSEEDDVLAKAAEdddkrtdhlegstscstnnnerrstvrQYVRskmprlrwtpdlHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKkldeagqgeicfspq
Low Complexity Region (SEG)
MRTDIEIQCRQEKSDRSEEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDDDKRTDHLEGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEICFSPQ
Disordered region (IsUnstruct)
*******************************WSCFDLN****************************************************MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY******************
Disordered Region (DISOPRED)
**********************************************************************************************RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQ********************
Disordered Region (DISEMBL)
*****************************QKWSCFDLNLNEEASCSEEDDVLAKA****************************RQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEICFSPQ
Disordered Region (DISPRO)
*****************************************************************************************KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKL*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTDIEIQCRQEKSDRSEEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDDDKRTDHLEGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEICFSPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q700D9	255	Putative Myb family trans	no	no	0.509	0.321	0.621	3e-25
Q9FJV5	276	Probable transcription fa	no	no	0.409	0.239	0.626	2e-18
Q941I2	322	Probable transcription fa	no	no	0.428	0.214	0.605	6e-18
Q9C616	388	Probable transcription fa	no	no	0.416	0.172	0.597	8e-18
Q93WJ9	403	Transcription repressor K	no	no	0.360	0.143	0.672	1e-17
Q0J235	532	Probable transcription fa	no	no	0.360	0.109	0.672	2e-17
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.341	0.133	0.636	1e-15
Q9SAK5	358	Myb family transcription	no	no	0.347	0.156	0.571	2e-13
Q9LZJ8	426	Putative two-component re	no	no	0.503	0.190	0.422	1e-10
Q9FFH0	386	Transcription activator G	no	no	0.354	0.147	0.517	7e-10

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 65/82 (79%)

Query: 72  CSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGL 131
           C  +N+     VR YVRS +PRLRWTP+LH SFVHAV+ LGGQ KATPKLVL++M+V+GL
Sbjct: 4   CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63

Query: 132 SIAHVKSHLQMYRSKKLDEAGQ 153
           +I+HVKSHLQMYR  ++   G+
Sbjct: 64  TISHVKSHLQMYRGSRITLLGK 85

Putative transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 90  KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK-L 148
           + PR+RWT  LH  FVHAV+ LGG E+ATPK VL+LMNV+ L++AHVKSHLQMYR+ K  
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCT 163

Query: 149 DEAGQGE 155
           D+   GE
Sbjct: 164 DKGSPGE 170

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 2/71 (2%)

Query: 80  RSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSH 139
           R T ++ VR+  PR+RWT  LH  FVHAV+ LGG E+ATPK VL+LM+V+ L++AHVKSH
Sbjct: 155 RFTAKRGVRA--PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSH 212

Query: 140 LQMYRSKKLDE 150
           LQMYR+ K  E
Sbjct: 213 LQMYRTIKSTE 223

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 5/72 (6%)

Query: 90  KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS-KKL 148
           + PR+RWT  LH  FVHAVE LGG E+ATPK VL+LM+V+ L++AHVKSHLQMYR+ K  
Sbjct: 212 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 271

Query: 149 DEA----GQGEI 156
           D+A    GQ ++
Sbjct: 272 DKAAASSGQSDV 283

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 48/58 (82%)

Query: 90  KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
           + PR+RWT  LH  FVHAVE LGG E+ATPK VL+LM+V+ L++AHVKSHLQMYR+ K
Sbjct: 218 RAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 48/58 (82%)

Query: 90  KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
           + PR+RWT  LH  FVHAVE LGG E+ATPK VL+LM+V+ L++AHVKSHLQMYR+ K
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 380

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 93  RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
           R+RWTP+LH +FV AV +LGG E+ATPK VL+L+N  GL+I HVKSHLQ YR+ +
Sbjct: 233 RMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTAR 287

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 92  PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
           PRLRWT +LH  FV AV +LGG +KATPK ++++M V+GL++ H+KSHLQ +R  K
Sbjct: 35  PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 16/97 (16%)

Query: 57  EDDDKRTDHL-----EGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERL 111
           E DD   D+L     EGS +   +  E+  T       K PR++WTP+LH  F  AVE++
Sbjct: 179 EYDDLEQDNLYESNEEGSKNTCDHKEEKSPT-------KKPRMQWTPELHHKFEVAVEKM 231

Query: 112 GGQEKATPKLVLQLM----NVRGLSIAHVKSHLQMYR 144
           G  EKA PK +L+ M    NV+GL+  +V SHLQ YR
Sbjct: 232 GSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYR 268

Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 90  KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
           K P++ WTP+LH  FV AVE+LG  +KA P  +L++MNV+ L+  +V SHLQ YRS +
Sbjct: 146 KKPKVDWTPELHRKFVQAVEQLG-VDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHR 202

Transcriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
224114658	155	predicted protein [Populus trichocarpa]	0.962	1.0	0.645	4e-46
224076954	140	predicted protein [Populus trichocarpa]	0.801	0.921	0.705	4e-45
356528330	384	PREDICTED: uncharacterized protein LOC10	0.906	0.380	0.636	3e-43
356510972	401	PREDICTED: uncharacterized protein LOC10	0.850	0.341	0.671	3e-42
357518971	426	Myb family transcription factor APL [Med	0.950	0.359	0.578	5e-40
147779933	175	hypothetical protein VITISV_022944 [Viti	0.819	0.754	0.612	2e-39
356557747	307	PREDICTED: uncharacterized protein LOC10	0.739	0.387	0.685	4e-39
302143431	277	unnamed protein product [Vitis vinifera]	0.857	0.498	0.589	6e-38
297740512	428	unnamed protein product [Vitis vinifera]	0.782	0.294	0.629	7e-38
356546954	365	PREDICTED: uncharacterized protein LOC10	0.472	0.208	0.934	1e-35

>gi|224114658|ref|XP_002316821.1| predicted protein [Populus trichocarpa] gi|222859886|gb|EEE97433.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/158 (64%), Positives = 114/158 (72%), Gaps = 3/158 (1%)

Query: 1   MRTDIEIQCRQEKSDRSEEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDDD 60
           M   +EI   QEK D  E QAEN S++S QK S +DLN  EEAS +E++     +  D D
Sbjct: 1   MEEGLEI-LDQEKIDGCEGQAENISLMSSQKCSSYDLN--EEASSAEDNGTAEVSNTDGD 57

Query: 61  KRTDHLEGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPK 120
            RT+    + + S   N  R TVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPK
Sbjct: 58  MRTEGNSANNATSAERNGLRPTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPK 117

Query: 121 LVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEICF 158
           LV QLMNVR LSIAHVKSHLQ YRSKKLDEAGQ E  +
Sbjct: 118 LVFQLMNVRELSIAHVKSHLQRYRSKKLDEAGQDEKSY 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076954|ref|XP_002305066.1| predicted protein [Populus trichocarpa] gi|222848030|gb|EEE85577.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 108/136 (79%), Gaps = 7/136 (5%)

Query: 18  EEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDDDKRTDHLEGSTSCSTNNN 77
           E+QA+NTS++S      FDLN  EEAS  E+   +  +  D +K T+    + + S   N
Sbjct: 5   EDQADNTSLMS-----SFDLN--EEASSGEDIGTVEVSNSDAEKITEENYANNATSAERN 57

Query: 78  ERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVK 137
           ER+STVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVK
Sbjct: 58  ERKSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVK 117

Query: 138 SHLQMYRSKKLDEAGQ 153
           SHLQMYRSKKLDEAGQ
Sbjct: 118 SHLQMYRSKKLDEAGQ 133

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528330|ref|XP_003532757.1| PREDICTED: uncharacterized protein LOC100787138 [Glycine max]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 118/154 (76%), Gaps = 8/154 (5%)

Query: 12  EKSDRSEEQAEN-TSVVSPQKWSCFDLNLNEEASC---SEEDDVLAKAAEDDDKRTDHLE 67
           E+ +RSEE A++ +S+ S QK S FDLN  EEAS    ++ D+   + A+D+   T+  +
Sbjct: 3   EEYERSEEHADDDSSMGSSQKCSSFDLN--EEASSEDNNDNDEGYDEEAKDEGTSTN--K 58

Query: 68  GSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN 127
            S+     +NERR  VRQYVRSKMPRLRWTP+LHLSFVHAVERLGGQE+ATPKLVLQLMN
Sbjct: 59  SSSITKEGSNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMN 118

Query: 128 VRGLSIAHVKSHLQMYRSKKLDEAGQGEICFSPQ 161
           VRGLSIAHVKSHLQMYRSKKLDEAGQ     +P+
Sbjct: 119 VRGLSIAHVKSHLQMYRSKKLDEAGQAHQSMNPR 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510972|ref|XP_003524206.1| PREDICTED: uncharacterized protein LOC100808625 [Glycine max]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 109/140 (77%), Gaps = 3/140 (2%)

Query: 15  DRSEEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDD-DKRTDHLEGSTSCS 73
           +RSE   +++S+ S QK S FDLN  EEAS  + +D   K  E+  ++ T   + S+   
Sbjct: 6   ERSEHADDDSSMGSSQKCSSFDLN--EEASSKDNNDNDDKGFEEAREEGTSTNKSSSMTK 63

Query: 74  TNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSI 133
             +NERR  VRQYVRSKMPRLRWTP+LHLSFVHAVERLGGQE+ATPKLVLQLMNVRGLSI
Sbjct: 64  EGSNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSI 123

Query: 134 AHVKSHLQMYRSKKLDEAGQ 153
           AHVKSHLQMYRSKKLDEAGQ
Sbjct: 124 AHVKSHLQMYRSKKLDEAGQ 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518971|ref|XP_003629774.1| Myb family transcription factor APL [Medicago truncatula] gi|355523796|gb|AET04250.1| Myb family transcription factor APL [Medicago truncatula]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/171 (57%), Positives = 115/171 (67%), Gaps = 18/171 (10%)

Query: 1   MRTDIEIQCRQEKSDRSEEQAENTSVVSPQKWSC-FDLNLNEEASCSEED---------- 49
           M    E Q  +  + +SEE  E+TS+ S     C    +LNEEAS S++D          
Sbjct: 1   MSDGYEKQENERSTGKSEEHGEDTSMGSSSHNKCSISFDLNEEASRSDQDVNNEENDEAC 60

Query: 50  -DVLAKAAEDDDKR--TDHLEGSTSCSTN----NNERRSTVRQYVRSKMPRLRWTPDLHL 102
              L    +DDD++   D  EGS+S +      N  RR+ VRQYVRSKMPRLRWTPDLH 
Sbjct: 61  DHELVNNGDDDDEKLAKDDDEGSSSSTKRSSGSNERRRNGVRQYVRSKMPRLRWTPDLHH 120

Query: 103 SFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQ 153
           SF+HAVERLGGQE+ATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQ
Sbjct: 121 SFMHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQ 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779933|emb|CAN60070.1| hypothetical protein VITISV_022944 [Vitis vinifera]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/160 (61%), Positives = 115/160 (71%), Gaps = 28/160 (17%)

Query: 11  QEKSDRS-EEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKA---AEDDDKRTDHL 66
           +EK+D S +E+ ENTS         FDLN   E S S EDD  A+A    EDD+      
Sbjct: 9   EEKNDGSKQEETENTS---------FDLN---EESNSPEDDAAAEAEVSMEDDEG----- 51

Query: 67  EGSTSCSTNNN----ERR---STVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATP 119
           E   S + NNN    E+R   ++VRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQ +ATP
Sbjct: 52  EREGSSANNNNVSAGEKRRGKNSVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQARATP 111

Query: 120 KLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEICFS 159
           KLVL+LMNV+GLSIAHVKSHLQMYRSK+LDE+GQG++  S
Sbjct: 112 KLVLELMNVKGLSIAHVKSHLQMYRSKRLDESGQGKVVVS 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557747|ref|XP_003547172.1| PREDICTED: uncharacterized protein LOC100787474 [Glycine max]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 93/127 (73%), Gaps = 8/127 (6%)

Query: 33  SCFDLNLNEEASCSEEDD------VLAKAAEDDDKRTDHLEGSTSCSTNNNERRSTVRQY 86
           S FDLN  EE +CSE++        L    E          GS+  S   NERR TVRQY
Sbjct: 19  SSFDLN--EELACSEDNSDTEECCELTTTNEKAKDEGTSANGSSISSREGNERRGTVRQY 76

Query: 87  VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146
           VRSKMPRLRWTP+LH SFVHAVERLGGQE+ATPKLVLQLMNVRGLSIAHVKSHLQMYRSK
Sbjct: 77  VRSKMPRLRWTPELHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 136

Query: 147 KLDEAGQ 153
           KLDE GQ
Sbjct: 137 KLDEVGQ 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143431|emb|CBI21992.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 107/146 (73%), Gaps = 8/146 (5%)

Query: 13  KSDRSEEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAED----DDKRTD-HLE 67
           +SD SE Q + +S++       FDLN   + +  EED       E+    D+  TD +  
Sbjct: 12  RSDGSEIQTKTSSLLCFPGHLSFDLN---QKAMDEEDSSTTGVPENEVKEDETSTDANYS 68

Query: 68  GSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN 127
            S++ +T   + R+TVRQY+RSKMPRLRWTPDLHL+FV+AVERLGGQE+ATPKLVLQLMN
Sbjct: 69  NSSNNTTVEGKERTTVRQYIRSKMPRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMN 128

Query: 128 VRGLSIAHVKSHLQMYRSKKLDEAGQ 153
           VRGLSIAHVKSHLQMYRSKKLD++GQ
Sbjct: 129 VRGLSIAHVKSHLQMYRSKKLDDSGQ 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740512|emb|CBI30694.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/154 (62%), Positives = 113/154 (73%), Gaps = 28/154 (18%)

Query: 11  QEKSDRS-EEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKA---AEDDDKRTDHL 66
           +EK+D S +E+ ENTS         FDLN   E S S EDD  A+A    EDD+      
Sbjct: 9   EEKNDGSKQEETENTS---------FDLN---EESNSPEDDAAAEAEVSMEDDE---GER 53

Query: 67  EGSTSCSTNNN----ERR---STVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATP 119
           EGS++   NNN    E+R   ++VRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQ +ATP
Sbjct: 54  EGSSA--NNNNVSAGEKRRGKNSVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQARATP 111

Query: 120 KLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQ 153
           KLVL+LMNV+GLSIAHVKSHLQMYRSK+LDE+GQ
Sbjct: 112 KLVLELMNVKGLSIAHVKSHLQMYRSKRLDESGQ 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546954|ref|XP_003541884.1| PREDICTED: uncharacterized protein LOC100789731 [Glycine max]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)

Query: 78  ERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVK 137
           ER STVRQYVRSKMPRLRWTPDLHL+FVHAVERLGGQE+ATPKLVLQLMNV+GLSIAHVK
Sbjct: 79  ERASTVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVKGLSIAHVK 138

Query: 138 SHLQMYRSKKLDEAGQ 153
           SHLQMYRSKKLDE+GQ
Sbjct: 139 SHLQMYRSKKLDESGQ 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2042927	340	AT2G38300 "AT2G38300" [Arabido	0.602	0.285	0.628	1.4e-30
TAIR|locus:2063141	410	AT2G40260 "AT2G40260" [Arabido	0.726	0.285	0.558	9.1e-29
TAIR|locus:2041539	255	AT2G42660 "AT2G42660" [Arabido	0.453	0.286	0.753	7.3e-27
TAIR|locus:2204518	255	AT1G14600 "AT1G14600" [Arabido	0.552	0.349	0.606	3.3e-24
TAIR|locus:2041145	256	AT2G02060 [Arabidopsis thalian	0.440	0.277	0.708	2.1e-22
TAIR|locus:505006489	322	KAN3 "AT4G17695" [Arabidopsis	0.428	0.214	0.605	1.2e-19
TAIR|locus:2125771	166	AT4G04580 "AT4G04580" [Arabido	0.440	0.427	0.577	1.9e-19
TAIR|locus:2163852	276	ATS "AT5G42630" [Arabidopsis t	0.409	0.239	0.626	4.6e-18
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.341	0.134	0.636	2.6e-17
TAIR|locus:2028346	388	KAN2 "AT1G32240" [Arabidopsis	0.416	0.172	0.597	5.9e-17

TAIR|locus:2042927 AT2G38300 "AT2G38300" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 61/97 (62%), Positives = 82/97 (84%)

Query:    57 EDDDKRTDHLEGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEK 116
             E++++  +  + S++ +   +++++ VR YVRSK+PRLRWTPDLHL FV AVERLGGQE+
Sbjct:    20 EEEEEEGEESKVSSNSTVEESDKKTKVRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQER 79

Query:   117 ATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQ 153
             ATPKLV Q+MN++GLSIAHVKSHLQMYRSKK+D+ GQ
Sbjct:    80 ATPKLVRQMMNIKGLSIAHVKSHLQMYRSKKIDDQGQ 116

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2063141 AT2G40260 "AT2G40260" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 72/129 (55%), Positives = 87/129 (67%)

Query:    40 NEEASCSEEDDVLAKAAEDDDKRT-DHLEGSTSCSTN--------NNERRSTVRQYVRSK 90
             NEE    EEDD   +  ED+++R+ D    S S            N +   +VR Y RSK
Sbjct:    25 NEEDK-DEEDD--EEGEEDEEERSGDQSPSSNSYEEESGSHHHDQNKKNGGSVRPYNRSK 81

Query:    91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDE 150
              PRLRWTP+LH+ F+ AVERLGG ++ATPKLVLQLMNV+GLSIAHVKSHLQMYRSKK DE
Sbjct:    82 TPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKTDE 141

Query:   151 AGQGEICFS 159
               +G+  FS
Sbjct:   142 PNEGDQGFS 150

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041539 AT2G42660 "AT2G42660" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 55/73 (75%), Positives = 67/73 (91%)

Query:    81 STVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHL 140
             + VRQY+RS MPRLRWTPDLHLSFV AV+RLGG ++ATPKLVL++MN++GLSIAHVKSHL
Sbjct:    40 NNVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHL 99

Query:   141 QMYRSKKLDEAGQ 153
             QMYRSKKL+ + +
Sbjct:   100 QMYRSKKLEPSSR 112

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2204518 AT1G14600 "AT1G14600" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 54/89 (60%), Positives = 68/89 (76%)

Query:    72 CSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGL 131
             C  +N+     VR YVRS +PRLRWTP+LH SFVHAV+ LGGQ KATPKLVL++M+V+GL
Sbjct:     4 CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63

Query:   132 SIAHVKSHLQMYRSKKLDEAGQGEICFSP 160
             +I+HVKSHLQMYR  ++   G+ E   SP
Sbjct:    64 TISHVKSHLQMYRGSRITLLGKPEESSSP 92

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041145 AT2G02060 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 51/72 (70%), Positives = 60/72 (83%)

Query:    73 STNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLS 132
             S N N+    VR YVRS +PRLRWTPDLH  FVHAVE LGGQ +ATPKLVL++M+V+GL+
Sbjct:    12 SFNGNKFHG-VRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLT 70

Query:   133 IAHVKSHLQMYR 144
             I+HVKSHLQMYR
Sbjct:    71 ISHVKSHLQMYR 82

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:505006489 KAN3 "AT4G17695" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query:    80 RSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSH 139
             R T ++ VR+  PR+RWT  LH  FVHAV+ LGG E+ATPK VL+LM+V+ L++AHVKSH
Sbjct:   155 RFTAKRGVRA--PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSH 212

Query:   140 LQMYRSKKLDE 150
             LQMYR+ K  E
Sbjct:   213 LQMYRTIKSTE 223

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2125771 AT4G04580 "AT4G04580" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 41/71 (57%), Positives = 55/71 (77%)

Query:    83 VRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQM 142
             VR Y+RS  PR+ WT DL + F+  +E+LGG+E ATPK +L LM VR L+I+HVKSHLQM
Sbjct:     6 VRSYIRSDNPRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQM 65

Query:   143 YRSKKLDEAGQ 153
             YR+KK +E+ +
Sbjct:    66 YRNKKKEESSK 76

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2163852 ATS "AT5G42630" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query:    90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLD 149
             + PR+RWT  LH  FVHAV+ LGG E+ATPK VL+LMNV+ L++AHVKSHLQMYR+ K  
Sbjct:   104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCT 163

Query:   150 EAGQ-GE 155
             + G  GE
Sbjct:   164 DKGSPGE 170

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0048481 "ovule development" evidence=IMP

GO:0080060 "integument development" evidence=IGI;IMP

GO:0005618 "cell wall" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:    93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
             R+RWTP+LH +FV AV  LGG E+ATPK VL++M V GL+I HVKSHLQ YR+ +
Sbjct:   227 RMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTAR 281

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2028346 KAN2 "AT1G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 5.9e-17, P = 5.9e-17
 Identities = 43/72 (59%), Positives = 55/72 (76%)

Query:    90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS-KKL 148
             + PR+RWT  LH  FVHAVE LGG E+ATPK VL+LM+V+ L++AHVKSHLQMYR+ K  
Sbjct:   212 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 271

Query:   149 DEA----GQGEI 156
             D+A    GQ ++
Sbjct:   272 DKAAASSGQSDV 283

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	161
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-21
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	3e-11
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-05

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 82.1 bits (203), Expect = 1e-21
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 92  PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
           PR+ WT DLH  F+ AV++LGG + ATPK +L+LM V GL+   V SHLQ YR K+
Sbjct: 2   PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 59.8 bits (144), Expect = 3e-11
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 7/106 (6%)

Query: 47  EEDDVLAKAAEDDDKRTDHLEGSTSCSTNNNERRSTVRQYVRSKMP-----RLRWTPDLH 101
           EE  +LA+AA+         + S  CS+ + +      +  ++  P     ++ WTP+LH
Sbjct: 187 EEALLLAEAAKATGDVVSASD-SGECSSVDRKDNQASPKSCKNAAPGKKKAKVDWTPELH 245

Query: 102 LSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
             FVHAVE+LG  EKA P  +L+LM V+ L+  ++ SHLQ YRS +
Sbjct: 246 RRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHR 290

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 93  RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
           R  WTP+     + AV++ G         + + +   G +    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
PLN03162	526	golden-2 like transcription factor; Provisional	99.92
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.91
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.64
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	96.92
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	96.91
smart00426	68	TEA TEA domain.	96.19
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	94.05
PF01285	431	TEA: TEA/ATTS domain family; InterPro: IPR000818 T	93.34
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.24
KOG3841	455	consensus TEF-1 and related transcription factor,	88.64
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	88.38
PLN03212	249	Transcription repressor MYB5; Provisional	88.0
PLN03212	249	Transcription repressor MYB5; Provisional	84.02
smart00501	93	BRIGHT BRIGHT, ARID (A/T-rich interaction domain)	83.88
PLN03091	459	hypothetical protein; Provisional	83.26
PLN03091	459	hypothetical protein; Provisional	80.89
KOG0724	335	consensus Zuotin and related molecular chaperones	80.71

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.92  E-value=1.1e-25  Score=202.36  Aligned_cols=60  Identities=50%  Similarity=0.804  Sum_probs=57.1

Q ss_pred             cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccc
Q 035517           88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKL  148 (161)
Q Consensus        88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~  148 (161)
                      ..||+||+||++||++||+||++|| .++|+||+||++|+|+|||++||||||||||+.+.
T Consensus       232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            4689999999999999999999999 79999999999999999999999999999999754

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.91  E-value=5.9e-25  Score=149.94  Aligned_cols=57  Identities=54%  Similarity=0.862  Sum_probs=54.6

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK  147 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk  147 (161)
                      |+|++||+|||.+||+||+.||+.+.|+||.|+++|++++||+.||+|||||||++.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~   57 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ   57 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            589999999999999999999987999999999999999999999999999999863

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.64  E-value=8.1e-08  Score=61.59  Aligned_cols=48  Identities=23%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      |..||++.+..|++||..+|..   .|+.|...|+ .+.|..||++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999941   5999999999 6899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=96.92  E-value=0.0041  Score=36.87  Aligned_cols=44  Identities=11%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      .||++.+..|+.++..+|-   ..+..|...|+-  .|..+|+.|.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~--rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPG--RTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCC--CCHHHHHHHHHHh
Confidence            4999999999999999992   379999999864  9999999997764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=96.91  E-value=0.0041  Score=37.23  Aligned_cols=44  Identities=11%  Similarity=0.236  Sum_probs=39.1

Q ss_pred             eecCHHHHHHHHHHHHHhC-CCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           94 LRWTPDLHLSFVHAVERLG-GQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        94 lrWT~ELH~kFv~AV~~LG-G~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      -.||++....|+.++..+| +    .+..|...|+  +.|..+|+.+...+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~----~w~~Ia~~~~--~rt~~~~~~~~~~~   46 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKN----NWEKIAKELP--GRTAEQCRERWNNL   46 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcC----CHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            4699999999999999999 4    7999999987  79999999887654

>smart00426 TEA TEA domain

Probab=96.19  E-value=0.0058  Score=43.92  Aligned_cols=46  Identities=22%  Similarity=0.420  Sum_probs=31.1

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchH-HHH-------------HhcC-C--CCCCHHHHHHHhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPK-LVL-------------QLMN-V--RGLSIAHVKSHLQM  142 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK-~IL-------------elM~-v--~gLT~~~VkSHLQK  142 (161)
                      +|.++|-..|++|+..+- . ..+-| ++.             +.+- .  .-.|+.||.||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~-~-~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP-P-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC-c-cCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999999874 2 22222 222             1111 1  24799999999995

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=94.05  E-value=0.19  Score=32.72  Aligned_cols=41  Identities=12%  Similarity=0.250  Sum_probs=35.1

Q ss_pred             cCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhh
Q 035517           96 WTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQM  142 (161)
Q Consensus        96 WT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQK  142 (161)
                      ||++.-...+.+|..+|.    .|+.|.+.|+  ..|..+|+.+...
T Consensus         1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~--~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN----DWKKIAEHLG--NRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-----HHHHHHHST--TS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc----CHHHHHHHHC--cCCHHHHHHHHHH
Confidence            999999999999999984    7999999996  6999999998888

...

>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids

Probab=93.34  E-value=0.059  Score=49.57  Aligned_cols=54  Identities=19%  Similarity=0.298  Sum_probs=30.7

Q ss_pred             CCCceecCHHHHHHHHHHHHHhCCCCCCchH----------HHHHhcCC---CCCCHHHHHHHhhhh
Q 035517           90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPK----------LVLQLMNV---RGLSIAHVKSHLQMY  143 (161)
Q Consensus        90 Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK----------~ILelM~v---~gLT~~~VkSHLQKY  143 (161)
                      ....-+|++++...|++|+..+--...+.-+          .|.+.+..   .-.|+.||.||||..
T Consensus        46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl  112 (431)
T PF01285_consen   46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL  112 (431)
T ss_dssp             GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence            4578899999999999999977311112211          23332221   358999999999998

The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.24  E-value=0.32  Score=33.99  Aligned_cols=51  Identities=14%  Similarity=0.276  Sum_probs=36.1

Q ss_pred             ecCHHHHHHHHHHHHHh---CCC------CCCchHHHHHhcCC---CCCCHHHHHHHhhhhhh
Q 035517           95 RWTPDLHLSFVHAVERL---GGQ------EKATPKLVLQLMNV---RGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~L---GG~------~kAtPK~ILelM~v---~gLT~~~VkSHLQKYR~  145 (161)
                      +||++..+.||+.+-..   |..      .+..+..|++.|+-   -.+|..||++|++..|.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            59999999999988543   432      12234567777763   34799999999987654

>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]

Probab=88.64  E-value=0.45  Score=44.33  Aligned_cols=58  Identities=26%  Similarity=0.468  Sum_probs=39.0

Q ss_pred             CCceecCHHHHHHHHHHHHHhC--CCCC----------CchHHHHHhcCC---CCCCHHHHHHHhhhhhhccc
Q 035517           91 MPRLRWTPDLHLSFVHAVERLG--GQEK----------ATPKLVLQLMNV---RGLSIAHVKSHLQMYRSKKL  148 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LG--G~~k----------AtPK~ILelM~v---~gLT~~~VkSHLQKYR~kk~  148 (161)
                      -.--+|+++.-+.|.+|+..+-  |.-|          -.-..|...++.   .-.||.||.||.|..-.++.
T Consensus        74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~  146 (455)
T KOG3841|consen   74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKL  146 (455)
T ss_pred             ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            3467899999999999999763  1100          011234444443   45899999999998755443

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=88.38  E-value=0.88  Score=42.54  Aligned_cols=48  Identities=19%  Similarity=0.229  Sum_probs=43.2

Q ss_pred             CceecCHHHHHHHHHHHHHhC-CCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           92 PRLRWTPDLHLSFVHAVERLG-GQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        92 ~RlrWT~ELH~kFv~AV~~LG-G~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      --..||.+.-..||+|++.+| |    .|..|.+.||.  -|.++++.|--|+..
T Consensus        71 ~~~~WtadEEilLLea~~t~G~G----NW~dIA~hIGt--Ktkeeck~hy~k~fv  119 (438)
T KOG0457|consen   71 LDPSWTADEEILLLEAAETYGFG----NWQDIADHIGT--KTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCChHHHHHHHHHHHHhCCC----cHHHHHHHHcc--cchHHHHHHHHHHHh
Confidence            356799999999999999999 4    89999999995  899999999988765

>PLN03212 Transcription repressor MYB5; Provisional

Probab=88.00  E-value=1.1  Score=39.17  Aligned_cols=50  Identities=14%  Similarity=0.077  Sum_probs=41.2

Q ss_pred             CCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        90 Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      ...|-.||+|.-.+-+.+|..+|.   ..|+.|...|+ ++.|..|++-+-..|
T Consensus        22 glKRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g-~gRT~KQCReRW~N~   71 (249)
T PLN03212         22 GMKRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAG-LLRCGKSCRLRWMNY   71 (249)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhh-cCCCcchHHHHHHHh
Confidence            345778999999999999999984   47999999886 578888888776665

>PLN03212 Transcription repressor MYB5; Provisional

Probab=84.02  E-value=2.8  Score=36.70  Aligned_cols=53  Identities=19%  Similarity=0.142  Sum_probs=44.3

Q ss_pred             CceeeeecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHH
Q 035517           81 STVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSH  139 (161)
Q Consensus        81 ~~vr~~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSH  139 (161)
                      ..+..|.++.-.+-.||.|.-..-++++..+|.    .|..|...|  ||.|-.+||.+
T Consensus        66 eRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn----KWs~IAk~L--pGRTDnqIKNR  118 (249)
T PLN03212         66 LRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN----RWSLIAGRI--PGRTDNEIKNY  118 (249)
T ss_pred             HHHHHhhchhcccCCCChHHHHHHHHHHHhccc----cHHHHHhhc--CCCCHHHHHHH
Confidence            345666777777889999999999999999984    799999977  78999999844

>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain

Probab=83.88  E-value=1.5  Score=31.35  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHhCCCCC----CchHHHHHhcCCCCC---CHHHHHHHhhhh
Q 035517           99 DLHLSFVHAVERLGGQEK----ATPKLVLQLMNVRGL---SIAHVKSHLQMY  143 (161)
Q Consensus        99 ELH~kFv~AV~~LGG~~k----AtPK~ILelM~v~gL---T~~~VkSHLQKY  143 (161)
                      +|+..|. +|..+||.+.    ..|+.|++.|+++.-   ...++++|-+||
T Consensus        33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~   83 (93)
T smart00501       33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERY   83 (93)
T ss_pred             cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHH
Confidence            7899897 5888999653    569999999999752   234566666665

DNA-binding domain containing a helix-turn-helix structure

>PLN03091 hypothetical protein; Provisional

Probab=83.26  E-value=2.3  Score=40.12  Aligned_cols=51  Identities=12%  Similarity=0.161  Sum_probs=39.8

Q ss_pred             CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      .+..|..||+|.-++.+.+|..+|.   ..|+.|..+|+ ++.|-.|++-+-..|
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g-~gRT~KQCRERW~Ny   60 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAG-LQRCGKSCRLRWINY   60 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhc-cCcCcchHhHHHHhc
Confidence            4556778999999999999999983   47999999887 466777776554443

>PLN03091 hypothetical protein; Provisional

Probab=80.89  E-value=5  Score=37.88  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             ceeeeecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHH----Hhhhh
Q 035517           82 TVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKS----HLQMY  143 (161)
Q Consensus        82 ~vr~~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkS----HLQKY  143 (161)
                      .+..|..+.-.+-.||+|.-.+.++.+..+|.    .|..|...|  ||.|-.+||.    +|+|+
T Consensus        56 RW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn----KWskIAk~L--PGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         56 RWINYLRPDLKRGTFSQQEENLIIELHAVLGN----RWSQIAAQL--PGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             HHHhccCCcccCCCCCHHHHHHHHHHHHHhCc----chHHHHHhc--CCCCHHHHHHHHHHHHHHH
Confidence            34556667677889999999999999999994    899999987  7999999984    46665

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=80.71  E-value=0.94  Score=38.89  Aligned_cols=57  Identities=16%  Similarity=0.028  Sum_probs=44.6

Q ss_pred             cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccccc
Q 035517           88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDE  150 (161)
Q Consensus        88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~~e  150 (161)
                      ..+...-+||++.|.+|.+||-..    +..|..|-++.+.  .+..++.+|-|+|..+....
T Consensus        48 i~~~~~~~~t~~~~~~~~~~l~~~----~~~~~~~~~~~~~--~~~v~~~~~~~~~~p~~~~~  104 (335)
T KOG0724|consen   48 ILDDDEPRRTPDSWDKFAEALPLE----KRLEDKIEEYIGL--VFDVNIRESGQKPFPKYGKS  104 (335)
T ss_pred             HHhccccccchhhhhHHHhcCccc----cccchhHHhhhhh--HHHHhhhhccCCCccccCcc
Confidence            334445569999999999988543    4589999999887  88889999999988765554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		2e-07

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 90  KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
           K PR+ WT +LH  F+ AV+ LG  E+A PK +L LMNV  L+  +V SHLQ +R
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFR 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-22

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 84.2 bits (208), Expect = 1e-22
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 89  SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
            K PR+ WT +LH  F+ AV+ LG  E+A PK +L LMNV  L+  +V SHLQ +R   
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.97
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.1
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.0
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	97.96
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	97.77
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	97.74
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	97.53
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.46
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.43
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	97.36
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	97.28
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	97.15
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	97.12
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	97.09
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	97.08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	97.07
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	96.98
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	96.83
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	96.66
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	96.57
2cjj_A	93	Radialis; plant development, DNA-binding protein,	96.54
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	96.42
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	96.36
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	96.35
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	96.25
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	96.15
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	96.08
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	95.93
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	95.9
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	94.87
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	95.82
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	95.79
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	95.77
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	95.62
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	95.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	94.9
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	94.89
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	94.6
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	94.58
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	94.23
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	94.1
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	94.06
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	92.5
2crg_A	70	Metastasis associated protein MTA3; transcription	91.52
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	89.86
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	81.68

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.97  E-value=6.8e-31  Score=183.01  Aligned_cols=59  Identities=47%  Similarity=0.743  Sum_probs=56.1

Q ss_pred             cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc
Q 035517           88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK  147 (161)
Q Consensus        88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk  147 (161)
                      ..+|+|++||+|||++||+||++|| .++|+||.||++|+|+|||+.||+|||||||++.
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999 7999999999999999999999999999999864

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=1.1e-05  Score=54.98  Aligned_cols=55  Identities=15%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCC---CchHHHHHhcCCCCCCHHHHHHHhhhhhhccc
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEK---ATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKL  148 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~k---AtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~  148 (161)
                      ..+-.||+|.+..|++||..+|. +.   -.|..|.+.|+  +.|..||+.|.|+|-.+..
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~~--~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADELG--NRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHHS--SSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence            34568999999999999999992 22   47999999985  6999999999999987654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.00  E-value=2.3e-05  Score=53.31  Aligned_cols=54  Identities=19%  Similarity=0.272  Sum_probs=47.2

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccccc
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDE  150 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~~e  150 (161)
                      ..+-.||+|.+..|+.||..+|-    .|..|..+|  ||.|..+|+.|.++|..+....
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSCS
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhc
Confidence            34678999999999999999993    899999987  5799999999999997766554

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=97.96  E-value=2e-05  Score=55.50  Aligned_cols=49  Identities=14%  Similarity=0.096  Sum_probs=44.0

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      ..+-.||++.+.+|++||+.+|+    .|+.|.++|+  +.|..||+.|.++|-+
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLPI   64 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhcc
Confidence            34678999999999999999994    8999999986  5999999999999844

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=97.77  E-value=6.7e-05  Score=49.49  Aligned_cols=50  Identities=20%  Similarity=0.180  Sum_probs=43.4

Q ss_pred             CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      .+-.||++...++++||..+|-   ..|+.|.+.|  ++.|..|++.|-++|-..
T Consensus         7 ~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            7 GDPSWTAQEEMALLEAVMDCGF---GNWQDVANQM--CTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHH--TTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHh--CCCCHHHHHHHHHHHccC
Confidence            4567999999999999999992   2799999999  579999999999988653

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.74  E-value=9.4e-05  Score=51.46  Aligned_cols=60  Identities=12%  Similarity=0.186  Sum_probs=50.1

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccccccCCCc
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGE  155 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~~e~g~~~  155 (161)
                      .-.||.+.+..|..||..+++...-.|.+|.+.|   |.|..+|+.|.+++......++|.+-
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~~~~~G~vp   67 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSVTCSPGMVS   67 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence            4479999999999999999854445688999998   59999999999999777666777653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=97.53  E-value=0.00021  Score=46.95  Aligned_cols=49  Identities=16%  Similarity=0.174  Sum_probs=42.6

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      +-.||++...++++||+.+|-   ..|+.|.+.|+. +.|..|++.|-++|.+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence            446999999999999999992   289999999963 6999999999998864

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.46  E-value=0.0002  Score=60.34  Aligned_cols=52  Identities=23%  Similarity=0.411  Sum_probs=46.0

Q ss_pred             CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      ..+..-+||++.+..|++|+..+|.    .|..|.++|+  +.|..||++|.++||.+
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~Vg--TKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG--NKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHS--SCCHHHHHHHHHHTTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence            3356789999999999999999994    6999999965  59999999999999875

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.43  E-value=0.00024  Score=64.72  Aligned_cols=51  Identities=24%  Similarity=0.414  Sum_probs=46.4

Q ss_pred             CCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        90 Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      .+...+||++.|..|++||..+|.    .|..|.++++.  -|..||++|.++||.+
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence            346789999999999999999994    79999999887  8999999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=97.36  E-value=0.00062  Score=45.72  Aligned_cols=55  Identities=11%  Similarity=0.131  Sum_probs=47.3

Q ss_pred             CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      ++++|-.||++.-...+.+|+.+|.   -.|..|...|+..+.|-.|++-+-..|-..
T Consensus         6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence            4567889999999999999999992   289999999976689999999988877543

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=97.28  E-value=0.00077  Score=43.92  Aligned_cols=50  Identities=12%  Similarity=0.135  Sum_probs=43.3

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      ..+-.||+|....++++|..+|-   ..|..|...|  ++.|..|++.|-++|-.
T Consensus         6 ~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~   55 (60)
T 2d9a_A            6 SGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRVLS   55 (60)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHHcC
Confidence            45778999999999999999992   2799999997  57999999999888744

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.15  E-value=0.0008  Score=46.88  Aligned_cols=56  Identities=9%  Similarity=0.079  Sum_probs=44.1

Q ss_pred             CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      +...+-.||++....|+.||..+|....-.|..|..+|  ||.|..+|+.|.+.+...
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence            33445679999999999999999832223577898887  489999999999887543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=97.12  E-value=0.0016  Score=43.84  Aligned_cols=49  Identities=10%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      .|-.||+|.-...+++|..+|.   -.|+.|++.+.+.+.|-.|++-+-..|
T Consensus        10 kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl   58 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTM   58 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            4668999999999999999992   269999999988899999999765544

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=97.09  E-value=0.0014  Score=41.43  Aligned_cols=47  Identities=17%  Similarity=0.220  Sum_probs=41.2

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      +-.||++....++++|..+|.   ..|+.|...|  ++.|..|++.|-++|-
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L   49 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKVL   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence            568999999999999999983   3799999997  5799999999988763

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=97.08  E-value=0.002  Score=41.16  Aligned_cols=49  Identities=12%  Similarity=0.180  Sum_probs=42.0

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      |-.||+|.....+++|..+|.   ..|..|...|+..+.|-.|++-+-..|-
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~   50 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            568999999999999999992   2799999999766899999998766653

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.07  E-value=0.0014  Score=43.48  Aligned_cols=54  Identities=13%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             ecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc
Q 035517           87 VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK  147 (161)
Q Consensus        87 ~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk  147 (161)
                      ..+...+-.||+|....++.+|..+|.    .|..|..++   |.|-.||+.|-+.|-...
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~~   56 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDKA   56 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhChH
Confidence            345566788999999999999999983    899999965   499999999999986543

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=96.98  E-value=0.0019  Score=40.87  Aligned_cols=47  Identities=11%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      +-.||++....++.+|..+|.   ..+..|...|  +|.|..|++.|-+.|-
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence            567999999999999999993   2699999997  5899999999988773

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.83  E-value=0.0034  Score=42.06  Aligned_cols=50  Identities=14%  Similarity=0.074  Sum_probs=43.5

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      ..+-.||++....++.+|..+|-   ..|+.|...|+  +.|..|++-|-..|-.
T Consensus         7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L~   56 (70)
T 2dim_A            7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWLD   56 (70)
T ss_dssp             STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHcC
Confidence            45778999999999999999992   27999999986  7999999999888744

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=96.66  E-value=0.0053  Score=45.44  Aligned_cols=65  Identities=15%  Similarity=0.269  Sum_probs=51.4

Q ss_pred             eecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccccccCCCcc
Q 035517           86 YVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEI  156 (161)
Q Consensus        86 ~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~~e~g~~~~  156 (161)
                      |..+...+-.||++....++.+|..+|.    .|..|..+|  ||.|..+|+.|...|-.+.+........
T Consensus        47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~l~~~~~~~~~~~~  111 (131)
T 3zqc_A           47 HLDPAVVKHAWTPEEDETIFRNYLKLGS----KWSVIAKLI--PGRTDNAIKNRWNSSISKRISTNSNHKE  111 (131)
T ss_dssp             HTSTTCCCSCCCHHHHHHHHHHHHHSCS----CHHHHTTTS--TTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred             ccCccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence            3444555668999999999999999995    699999876  5899999999998887776654444333

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=96.57  E-value=0.0048  Score=43.70  Aligned_cols=52  Identities=19%  Similarity=0.302  Sum_probs=43.6

Q ss_pred             ecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           87 VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        87 ~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      ..+...+-.||++....++.+|..+|.    .+..|..+|  ||.|..+|+.|...+-
T Consensus        50 l~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~~  101 (105)
T 1gv2_A           50 LNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNSTM  101 (105)
T ss_dssp             TCCCCCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHHT
T ss_pred             cCCcccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            344455778999999999999999994    799999875  7899999999977653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=96.54  E-value=0.0047  Score=44.78  Aligned_cols=59  Identities=17%  Similarity=0.223  Sum_probs=46.3

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc-ccccCC
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK-LDEAGQ  153 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk-~~e~g~  153 (161)
                      .-.||.+....|+.||..+|....-.|..|..+|+  |.|..+|+.|-+.+.... .-++|.
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp--GRT~~q~k~ry~~l~~dv~~iesg~   67 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEILVEDIKYIESGK   67 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhhcCC
Confidence            34699999999999999998322346889999984  899999999999886543 334554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.42  E-value=0.008  Score=39.73  Aligned_cols=45  Identities=11%  Similarity=0.019  Sum_probs=37.9

Q ss_pred             CCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHh
Q 035517           90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHL  140 (161)
Q Consensus        90 Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHL  140 (161)
                      ++..-.||++.|..|++|+..+|.    .+..|..+|  |+.|..+|..|-
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l--~~rt~~~~v~~Y   53 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYL--ERKSVPDCVLYY   53 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHC--TTSCHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHH
Confidence            345678999999999999999983    799999775  579999998653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=96.36  E-value=0.0074  Score=43.23  Aligned_cols=55  Identities=11%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             eecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           86 YVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        86 ~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      |..+...+-.||++....++.+|..+|.    .+..|...|  ||.|..+|+.|...+..+
T Consensus        46 ~L~p~i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           46 YINPALRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             HSSSCCTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             HHcccccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence            3444555778999999999999999994    799999987  689999999998766543

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=96.35  E-value=0.0031  Score=45.56  Aligned_cols=58  Identities=22%  Similarity=0.351  Sum_probs=39.3

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHH--------------hcC---CCCCCHHHHHHHhhhhhhccccc
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQ--------------LMN---VRGLSIAHVKSHLQMYRSKKLDE  150 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILe--------------lM~---v~gLT~~~VkSHLQKYR~kk~~e  150 (161)
                      ...-+|.++|-..|++|+..+- +.. +.|.+|.              .+-   -.-.|+.||.||||.-+..+..+
T Consensus         4 ~~e~vW~~~lE~aF~eaL~~yp-~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~~   78 (82)
T 2hzd_A            4 DAEGVWSPDIEQSFQEALSIYP-PCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRD   78 (82)
T ss_dssp             GGSCCSCHHHHHHHHHHHHHSC-SSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTTC
T ss_pred             CcCCcCCHHHHHHHHHHHHHcC-CCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhhh
Confidence            3466899999999999999874 111 2222221              111   14589999999999988765543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=96.25  E-value=0.02  Score=42.52  Aligned_cols=54  Identities=17%  Similarity=0.081  Sum_probs=44.8

Q ss_pred             cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC--CCCCCHHHHHHHhhhhh
Q 035517           88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN--VRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~--v~gLT~~~VkSHLQKYR  144 (161)
                      ..+++|-.||+|.-...+++|+.+|..   .|+.|+..+.  .++.|-.+++.+...+-
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnll   63 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLV   63 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999932   7999999773  48999999997765554

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=96.15  E-value=0.012  Score=40.92  Aligned_cols=52  Identities=13%  Similarity=0.081  Sum_probs=42.1

Q ss_pred             eeeeecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhh
Q 035517           83 VRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQ  141 (161)
Q Consensus        83 vr~~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQ  141 (161)
                      +..|..+...+-.||+|.-..++++|..+|.    .|..|...|   |.|-.+|+.+..
T Consensus        13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l---gRt~~q~knRw~   64 (73)
T 2llk_A           13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGN----DWATIGAAL---GRSASSVKDRCR   64 (73)
T ss_dssp             ------CCCCCCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH---TSCHHHHHHHHH
T ss_pred             eeeecCCCCCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh---CCCHHHHHHHHH
Confidence            4456677788899999999999999999993    599999999   799999999865

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=96.08  E-value=0.011  Score=43.31  Aligned_cols=52  Identities=21%  Similarity=0.304  Sum_probs=43.7

Q ss_pred             ecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           87 VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        87 ~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      ..+...+-.||+|....++.+|..+|.    .|..|..+|  ||.|..+|+.|...+-
T Consensus        73 l~p~~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~r~~~~~  124 (128)
T 1h8a_C           73 LNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAVKNHWNSTM  124 (128)
T ss_dssp             TCSSSCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGS--TTCCHHHHHHHHHTTT
T ss_pred             cccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence            344455778999999999999999994    799999986  6899999999976553

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=95.93  E-value=0.019  Score=42.31  Aligned_cols=52  Identities=13%  Similarity=0.215  Sum_probs=44.1

Q ss_pred             cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      .....+..||+|.-.+.+.+|..+|.    .|+.|.+.|+  +.|..|++.+-..|-.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~--~Rt~~qcr~Rw~~~l~   57 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFP--NRNARQCRDRWKNYLA   57 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCT--TCCHHHHHHHHHHHTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHhhhcc
Confidence            34566889999999999999999983    7999999874  7999999998887753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=95.90  E-value=0.021  Score=41.84  Aligned_cols=56  Identities=9%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             eeecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           85 QYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        85 ~~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      .+..+...+-.||+|....++.+|..+|.   -.|..|...|  ||.|..+++.|-..|-.
T Consensus        19 ~~l~p~~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l~   74 (128)
T 1h8a_C           19 KVLNPELNKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHL--KGRIGKQCRERWHNHLN   74 (128)
T ss_dssp             ---CTTCCCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHS--SSCCHHHHHHHHHHTTC
T ss_pred             HhhCCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence            44556667789999999999999999994   2699999998  57999999998887643

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=94.87  E-value=0.0014  Score=46.56  Aligned_cols=49  Identities=10%  Similarity=0.152  Sum_probs=42.5

Q ss_pred             CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      .+-.||++....|+.+|..+|-    .|..|..+|  +|.|..+|+.|.+.|..+
T Consensus        15 ~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           15 YFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNYKKR   63 (89)
Confidence            4668999999999999999983    699999986  589999999998877554

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=95.82  E-value=0.017  Score=42.49  Aligned_cols=54  Identities=15%  Similarity=0.329  Sum_probs=45.0

Q ss_pred             ecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           87 VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        87 ~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      ..+...+-.||+|....++.+|..+|.    .|..|...|  ||.|..+|+.|...+..+
T Consensus        56 l~p~~~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           56 LAPSISHTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             TSTTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHHHHHH
T ss_pred             cccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHh
Confidence            334455668999999999999999994    799999876  689999999998777654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=95.79  E-value=0.02  Score=40.43  Aligned_cols=47  Identities=11%  Similarity=0.193  Sum_probs=41.1

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      +-.||++....++.+|+.+|.   ..+..|...|  |+.|..||+.|-+.|-
T Consensus         4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL   50 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhcc
Confidence            567999999999999999994   2699999998  5899999999888774

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=95.77  E-value=0.017  Score=43.66  Aligned_cols=54  Identities=19%  Similarity=0.276  Sum_probs=45.0

Q ss_pred             eecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           86 YVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        86 ~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      |..+...+-.||++....++.++..+|.    .+..|..+|  ||.|..+|+.|...+-.
T Consensus       103 ~l~p~~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l--~gRt~~~~knr~~~~~r  156 (159)
T 1h89_C          103 HLNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNSTMR  156 (159)
T ss_dssp             TTCTTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHTTTC
T ss_pred             HhCccccccCCChHHHHHHHHHHHHHCC----CHHHHHHHC--CCCCHHHHHHHHHHHHh
Confidence            4445556788999999999999999994    799999975  78999999999776543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.62  E-value=0.042  Score=36.64  Aligned_cols=47  Identities=15%  Similarity=0.152  Sum_probs=36.7

Q ss_pred             CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHh
Q 035517           89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHL  140 (161)
Q Consensus        89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHL  140 (161)
                      +...+-.||++.|..|.+|+..+|-    ....|...| |+..|..+|..+-
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~-v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKEL-LPNKETGELITFY   51 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHS-CTTSCHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHH-cCCCcHHHHHHHH
Confidence            4455678999999999999999993    578888732 4458999987544

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=95.00  E-value=0.057  Score=38.54  Aligned_cols=46  Identities=20%  Similarity=0.219  Sum_probs=39.8

Q ss_pred             eecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           94 LRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        94 lrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      ..||++....++.+|..+|.   ..+..|.+.|+  +.|..|+.-+-..|-
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~L   47 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERWNNYI   47 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHHHHHH
Confidence            47999999999999999994   37999999985  799999998877663

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=94.90  E-value=0.051  Score=41.05  Aligned_cols=54  Identities=9%  Similarity=0.186  Sum_probs=44.8

Q ss_pred             eecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           86 YVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        86 ~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      |..+...+-.||++....++.+|..+|.   -.+..|...|  ||.|..+|+.+-..|-
T Consensus        51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l  104 (159)
T 1h89_C           51 VLNPELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL  104 (159)
T ss_dssp             TTCTTCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHHTT
T ss_pred             ccCCCcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHHHh
Confidence            3344556789999999999999999993   2599999988  5899999999887764

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=94.89  E-value=0.1  Score=39.69  Aligned_cols=54  Identities=22%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhc--CCCCCCHHHHHHHhhhhh
Q 035517           88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLM--NVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM--~v~gLT~~~VkSHLQKYR  144 (161)
                      ..++.|-.||+|.-...+++|+.+|.   -.|+.|+..+  ..++.|-.+++-+...+-
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdRWrnll   81 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDKWKTLV   81 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            35677899999999999999999993   2799999976  358999999996554443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=94.60  E-value=0.013  Score=41.74  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQM  142 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQK  142 (161)
                      .||.+-...|..|+..++....-.|.+|.+.++  |.|.++|+.|.|-
T Consensus        22 ~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp--GKT~eEVk~hY~~   67 (74)
T 4eef_G           22 PWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK--GRTPEEVKKHYEL   67 (74)
T ss_dssp             CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC--SSCHHHHHGGGC-
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC--CCCHHHHHHHHHH
Confidence            599999999999999997443455778888765  7999999999763

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=94.58  E-value=0.075  Score=37.23  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=38.3

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      .||.+....|..|+..++-..--.|..|...++  |.|.++|..|-+..
T Consensus        10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~--gKT~eE~~~hY~~l   56 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG--SRSPEECQRKYMEN   56 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT--TSCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            599999999999999997323345788988875  69999999886655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=94.23  E-value=0.12  Score=36.50  Aligned_cols=47  Identities=17%  Similarity=0.070  Sum_probs=39.2

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC--CCCCCHHHHHHHhhhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN--VRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~--v~gLT~~~VkSHLQKYR  144 (161)
                      .||+|.....+++|+.+|..   .|+.|+....  +++.|-.+||.+-..+-
T Consensus         2 ~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnll   50 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLV   50 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence            49999999999999999932   7999998743  58999999997765553

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=94.10  E-value=0.088  Score=39.96  Aligned_cols=54  Identities=17%  Similarity=0.076  Sum_probs=45.4

Q ss_pred             cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC--CCCCCHHHHHHHhhhhh
Q 035517           88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN--VRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~--v~gLT~~~VkSHLQKYR  144 (161)
                      ..+++|-.||++.-...+++|+.+|.   -.|+.|+..+.  .++.|-.+++.+...+-
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll   67 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLV   67 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999993   27999999975  48999999997765554

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=94.06  E-value=0.06  Score=39.70  Aligned_cols=48  Identities=8%  Similarity=-0.070  Sum_probs=40.8

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~  145 (161)
                      +-.||+|.-...+.+|..+|.   -.|+.|...|  |+.|..|+.-|-+.|-.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~   49 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGP---QNWPRITSFL--PNRSPKQCRERWFNHLD   49 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCS---CCGGGGTTSC--TTSCHHHHHHHHHHHTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCc---CCHHHHHHHH--CCCCHHHHHHHHhhccC
Confidence            346999999999999999983   2699999988  57999999988887743

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=92.50  E-value=0.45  Score=32.56  Aligned_cols=47  Identities=17%  Similarity=0.225  Sum_probs=39.4

Q ss_pred             CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC-CCCCCHHHHHHHhhhhhh
Q 035517           92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN-VRGLSIAHVKSHLQMYRS  145 (161)
Q Consensus        92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~-v~gLT~~~VkSHLQKYR~  145 (161)
                      .|-.||+|.-...++.|+.+|-    .|+.|+.-.. .++.|.-.||.   |||.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKd---k~r~   54 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAH---KYHR   54 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHH---HHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHH---HHHH
Confidence            5778999999999999999993    8999997544 47899999994   5654

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=91.52  E-value=0.48  Score=32.13  Aligned_cols=45  Identities=16%  Similarity=0.129  Sum_probs=35.9

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHh
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHL  140 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHL  140 (161)
                      ...-.||++.|..|.+|+..+|-    ....|...| ||..|..+|..+-
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~-v~~Kt~~~~v~fY   50 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGK----DFNDIRQDF-LPWKSLTSIIEYY   50 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTT-CSSSCHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHH-cCCCCHHHHHHHH
Confidence            45668999999999999999993    478888721 4569999988765

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=89.86  E-value=0.58  Score=33.47  Aligned_cols=43  Identities=9%  Similarity=0.069  Sum_probs=34.7

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHH
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSH  139 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSH  139 (161)
                      +..-.||++.|..|.+|+.+.|-    ...+|.+.|  |..|..++--|
T Consensus        41 ~~~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l--~~Kt~~~cV~~   83 (94)
T 4a69_C           41 QVMNMWSEQEKETFREKFMQHPK----NFGLIASFL--ERKTVAECVLY   83 (94)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHSTT----CHHHHHHTC--TTCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHc--CCCCHHHHHHH
Confidence            34567999999999999999984    688997775  56888887654

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=81.68  E-value=1.7  Score=36.73  Aligned_cols=55  Identities=13%  Similarity=0.179  Sum_probs=43.5

Q ss_pred             CceecCHHHHHHHHHHHHHhCCC-CCCc-hHHHHHhcCCCCCCHHHHHHHhhhhhhccc
Q 035517           92 PRLRWTPDLHLSFVHAVERLGGQ-EKAT-PKLVLQLMNVRGLSIAHVKSHLQMYRSKKL  148 (161)
Q Consensus        92 ~RlrWT~ELH~kFv~AV~~LGG~-~kAt-PK~ILelM~v~gLT~~~VkSHLQKYR~kk~  148 (161)
                      .+-.||+|.-+.-+++|..+|-. .... |..|..+|  ||.|-.+|+.|...|-.+.+
T Consensus         7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L--pGRT~nsIRnRw~~~L~~~l   63 (246)
T 1ign_A            7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV--PNHTGNSIRHRFRVYLSKRL   63 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS--TTSCHHHHHHHHHHTTGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc--CCCCHHHHHHHHHHHHhhhc
Confidence            45689999999999999999831 0223 88999875  58999999999988866554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	9e-20

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.7 bits (186), Expect = 9e-20
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 89  SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
            K PR+ WT +LH  F+ AV+ LG  E+A PK +L LMNV  L+  +V SHLQ +R   
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.95
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.07
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	97.84
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.3
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	97.25
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	97.15
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	97.01
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	96.82
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	96.77
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	96.45
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	96.35
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	96.26
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	96.11
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	95.91
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	93.9
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	93.02

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=6.1e-29  Score=171.14  Aligned_cols=59  Identities=47%  Similarity=0.724  Sum_probs=55.9

Q ss_pred             CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccc
Q 035517           89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKL  148 (161)
Q Consensus        89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~  148 (161)
                      .||+|++||+|||.+||+||++||+ +.|+||.|+++|+|++||+.||+|||||||++..
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999984 8999999999999999999999999999999754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.2e-06  Score=54.18  Aligned_cols=50  Identities=20%  Similarity=0.363  Sum_probs=44.3

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccc
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKL  148 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~  148 (161)
                      ..+||+|.+..|++||..+|.    .+..|..+|+  +.|..+|++|.++|.....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~--~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLIG--SRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS--SSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHcC--CCCHHHHHHHHHHHHHHHH
Confidence            367999999999999999994    8999999986  6999999999999876544

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.7e-05  Score=49.32  Aligned_cols=45  Identities=20%  Similarity=0.225  Sum_probs=40.4

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      .||.+.+.+|++||..+|-   ..++.|.+.|+  +.|..|++.|-++|.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~---~nW~~Ia~~~~--~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGF---GNWQDVANQMC--TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCT---TCHHHHHHHHT--TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCC---ccHHHHHHHcC--CCCHHHHHHHHHHhC
Confidence            3999999999999999982   26999999997  699999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00027  Score=43.85  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      |..||++.....+++|..+|..   .++.|...|  +|.|..|++.|-++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTD---DWKVIANYL--PNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSS---CHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHH--CCCCHHHHHHHHHhh
Confidence            3579999999999999999932   699999988  589999999998876

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.25  E-value=0.00029  Score=45.48  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      .||++.+..|++||..+|......|.+|...|+  |.|..||+.|-++.
T Consensus         3 ~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~--gRt~~qc~~r~~~L   49 (63)
T d2cjja1           3 PWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEIL   49 (63)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence            499999999999999999544456999999986  79999999998543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00054  Score=44.11  Aligned_cols=50  Identities=24%  Similarity=0.430  Sum_probs=43.4

Q ss_pred             CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      +..-+||++....|+.||..+|.    .+..|.++|+  +.|..+|+.|..+|+.+
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~~--~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG--NKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHS--SCCHHHHHHHHHHTTTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCc----hHHHHHHHcC--CCCHHHHHHHHHHHHhh
Confidence            34567999999999999999994    5999999985  69999999999988643

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00041  Score=45.13  Aligned_cols=48  Identities=8%  Similarity=0.092  Sum_probs=40.3

Q ss_pred             CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhh
Q 035517           89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQM  142 (161)
Q Consensus        89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQK  142 (161)
                      .++..-.||++.+..|++||..+|.    .+..|.++|  |+.|..||+.|-..
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~----~w~~Ia~~~--~~rt~~q~~~~yy~   60 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPK----NFGLIASFL--ERKTVAECVLYYYL   60 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTS----CSSSHHHHT--TTSCHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCC----cHHHHHHHc--CCCCHHHHHHHHHH
Confidence            3445567999999999999999994    699999986  57999999999643

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0022  Score=40.36  Aligned_cols=49  Identities=10%  Similarity=0.156  Sum_probs=41.5

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR  144 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR  144 (161)
                      |-.||++.-..++++|..+|-   ..|..|++.+..++.|..|++-+-..|.
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~---~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~   50 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTMK   50 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---ChHHHHHhhcCCCCcCHHHHHHHHHHHh
Confidence            457999999999999999982   1699999998888999999997665543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00089  Score=42.58  Aligned_cols=51  Identities=8%  Similarity=0.074  Sum_probs=40.5

Q ss_pred             CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhh
Q 035517           89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQ  141 (161)
Q Consensus        89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQ  141 (161)
                      ++..+-.||++....|++||..+|....-.|..|.+.|+  |.|..||..|-+
T Consensus         8 ~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~--~Rt~~qc~~R~~   58 (60)
T d2cqra1           8 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP--SKSKEDCIARYK   58 (60)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS--SSCHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC--CCCHHHHHHHHH
Confidence            344556799999999999999998432234889998874  899999998765

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0051  Score=38.25  Aligned_cols=48  Identities=13%  Similarity=0.155  Sum_probs=40.8

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      |-.||+|.-...+++|..+|-.   .|..|+..+.+.+.|..+++-....|
T Consensus         2 r~~WT~eED~~L~~~v~~~G~~---~W~~I~~~~~~~~Rt~~q~r~Rw~nl   49 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRWRTM   49 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC---CHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            4579999999999999999921   79999998888899999999766554

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.0038  Score=38.91  Aligned_cols=46  Identities=11%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      |-.||++.-.+-+++|.++|-   ..|+.|.+.|+  +.|..|++.+-++|
T Consensus         3 rg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~--~Rt~~qc~~Rw~~~   48 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLK--GRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTST--TCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHC--CCCHHHHHHHHHhh
Confidence            556999999999999999983   26999999884  79999999998876

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0063  Score=39.59  Aligned_cols=56  Identities=11%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccccccCC
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQ  153 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~~e~g~  153 (161)
                      .||.+-...|..|+..+.+...-.|.+|.+.||   .|..+|..+.++.+.......|.
T Consensus         3 eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg---kt~~ev~~~~k~l~e~~~~~~g~   58 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAKQLKDSVTCSPGM   58 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHHHHHHSCCCCSCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC---CCHHHHHHHHHHHHHhcccCCCC
Confidence            699999999999999997544556889999994   89999999999998876665553

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0063  Score=37.30  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=38.0

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY  143 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY  143 (161)
                      -||+|.-..++++|..+|.    .|..|..+|  ||.|-.+|+.|-..+
T Consensus         3 ~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           3 SWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhh----HHHHHHhHc--CCCCHHHHHHHHHHH
Confidence            5999999999999999993    799999876  689999999987654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.013  Score=37.14  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=37.7

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccc
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKL  148 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~  148 (161)
                      .||++.|..|++|+..+|-    ....|.+.| ||+.|..+|.+|-  |.-++.
T Consensus         3 ~WT~eE~~~F~~~~~~yGK----df~~I~~~~-v~~Ks~~~~v~fY--Y~~Kkt   49 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK----DFNDIRQDF-LPWKSLTSIIEYY--YMWKTT   49 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS----CHHHHHHTT-CSSSCHHHHHHHH--HHHHTC
T ss_pred             CCCHHHHHHHHHHHHHHcc----cHHHHHHHH-cCCCCHHHHHHHH--HHHhCC
Confidence            5999999999999999994    778887744 2569999999997  444443

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.90  E-value=0.03  Score=38.18  Aligned_cols=52  Identities=10%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             ceecCHHHHHHHHHHHHHhCCC--CCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517           93 RLRWTPDLHLSFVHAVERLGGQ--EKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK  146 (161)
Q Consensus        93 RlrWT~ELH~kFv~AV~~LGG~--~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k  146 (161)
                      |-.||+|.-...+++|..+|-.  ....|+.|...|  ||.|-.|++.+-..|=..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~l--pgRt~~qcr~Rw~~~L~p   54 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV--PNHTGNSIRHRFRVYLSK   54 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS--TTSCHHHHHHHHHHTTGG
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHc--CCCCHHHHHHHHHHHcCc
Confidence            4579999999999999999821  123499998887  689999999988887554

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.02  E-value=0.13  Score=34.20  Aligned_cols=46  Identities=17%  Similarity=0.086  Sum_probs=38.6

Q ss_pred             ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC--CCCCCHHHHHHHhhhh
Q 035517           95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN--VRGLSIAHVKSHLQMY  143 (161)
Q Consensus        95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~--v~gLT~~~VkSHLQKY  143 (161)
                      .||+|.-...+++|+.+|..   .|..|+..|.  +++.|..+++-.-..|
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~---~W~~I~~~~~~~~~~Rt~~qck~RWrn~   49 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTL   49 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcc---cHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence            49999999999999999942   6999999885  5899999999655443