Citrus Sinensis ID: 035526

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------

MICECPTGEEDSLRQDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAETGEECGDSSSRRRSSASEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNSKNLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL

ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEcEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHccccHHHHHHHHccccccHHHcccHHHHHHHHcccccccEEEEEEEEccccccccEEEcccccccEEEcccccccccccEEEEEEcccEEEEEccccccccccccccccccccEEEEEEcccccEEEcccccccccccEEEEEcccccEEEEEEcccccccccEEEEEcccccEEccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEEEEccccccccccEEEEEEcccccEEEcccccccccEEEEEEEEccEEEEEEccccEEEEEccccEEEEccccccccccccccHHHHHHHHcccccccccEEEEEcccccccccEEEEccccEEEEEEEEEEEEEEEEEEEEEEEcccccccHHcccccccccccccccccccEEEccc

ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEEEEcccccccccEEEEcccccccccccccccccccEEEEEEccccEEEEEccccccccccccccccEcccEEEEEccccccHcccccccccccccEEEEEEccccEEEEEEccccccccccHHHccccccccccccHHHHHHHHcccHcccccccccccccccccHHHcccccccccccEEEEEEcccccccccccccEEEccccccEEEEccccccEEEEEccEEEccEEEEEEccccEEEEEccccEEEEEccccccccHHHHcccEEEEccccccccccEEEEEEcccccccccHEEEccccEEEEEEHEHHHcHHEcEEEEEEcccccccHHHHHHccHHHHHccHHHccccEEEEcc

micecptgeedslrqDFESLSVSKRLVRSVSRKLRNknlrnydgddeddvkgvSLKCLTLygrgggckvgaetgeecgdsssrrrssaseegkgykpfcgseeigvgvdcfsygvkekfwkksnsknlelqdsvrnsrmhiflpddtlemclvrfpltsLMNARLVCKKWRYLTTTPRFLQMRReglhqnpwlFLFGAvkdgyysgeihaldvsqdqWHRIDASILKGRFMFSVVSIMDDVYVVGGCssltsfgrvdgssfkthkrvlVFSPLTKSWWKVASMRYArsmpilgisevspefsiipchqshqdrrfprsrlggvsdvyedphrlsLRRQYRnsfdgfegsllpnrksykFIRQKSDQSIAKASKRFVLIAVGglgswdepldsgeiydsVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIergfwigiqtspfppcvieyyPKLVSWArshvpqlecwtkvsvhpdapmdwSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVsekwmnwshisrnhmdYELDATSCMTKSLAVLHL

micecptgeedslrqdfeslsvskrlvrsvsrklrnknlrnydgddeddvkGVSLKCLTLygrgggckvgaetgeecgdsssrrrssaseegkgykpfcgseeigVGVDCFSYGVKEKfwkksnsknlelqdsvrnSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSfgrvdgssfkthkrvlvfspltkswWKVASMRYARSMPILGISEVSPEFSIIPChqshqdrrfprsrlggvsdvyedphrlslrrqyrnsfdgfegsllpnrkSYKFIRQKSDQSIAKASKRFVLIAVgglgswdepldSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL

MICECPTGEEDSLRQDFEslsvskrlvrsvsrklrNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAETGEECGDsssrrrssasEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNSKNLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL

*************************************************VKGVSLKCLTLYGRGGGCKVG*************************KPFCGSEEIGVGVDCFSYGVKEKFWKK***********VRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCH*******************************Y**SFDGFEGSLL****SYKFI*******IAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSL*****

*********************************************************************************************************************************************FLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL

*************RQDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAE*********************GYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNSKNLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFI********AKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL

**************QDFESLSVSKRLVRSVSRKLRNKNL*********DVKGVSLKCLTLYGRGGGCKVGAE**********************YKPFCGSEEIGVGVDCFSYGVKEKFWKKSNS****LQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		557	2.2.26 [Sep-21-2011]
Q9FII2		563	F-box/kelch-repeat protei	yes	no	0.958	0.948	0.557	1e-180
Q9FII1		563	F-box/kelch-repeat protei	yes	no	0.956	0.946	0.556	1e-177
Q9LFV5		448	F-box/kelch-repeat protei	no	no	0.590	0.734	0.221	1e-07
Q9C6Z0		398	F-box/kelch-repeat protei	no	no	0.165	0.231	0.357	3e-07
Q9M310		411	F-box/kelch-repeat protei	no	no	0.228	0.309	0.277	2e-06
Q9CAG8		376	F-box/kelch-repeat protei	no	no	0.240	0.356	0.229	1e-05
Q9M8L2		354	F-box/kelch-repeat protei	no	no	0.244	0.384	0.288	4e-05
Q8LAW2		372	F-box protein AFR OS=Arab	no	no	0.276	0.413	0.238	0.0003

>sp\|Q9FII2\|FK117_ARATH F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1	Back alignment and function desciption

 Score =  630 bits (1625), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 326/585 (55%), Positives = 415/585 (70%), Gaps = 51/585 (8%)

Query: 1   MICECPTGEEDSLRQDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTL 60
           MI E P G E+S+RQD E L+VS+RLV+SVS+KL+ K  +    +DE+  +G ++ CL++
Sbjct: 2   MISEKPLGVEESIRQDLEVLTVSRRLVKSVSQKLKKKIHKTEVVEDEEIARG-AVNCLSI 60

Query: 61  YGRGGGCKVGAETGEECGDSSSRRRSSASEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFW 120
                GC+V A+TGE+  DSS++R SSASEEGKG    CG+EE    +DCFSYGV+E+FW
Sbjct: 61  ---SVGCRV-ADTGEDFEDSSNKRWSSASEEGKGLMTICGTEE--TRLDCFSYGVRERFW 114

Query: 121 KKSNSKNLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFL 180
           KK+N K L   DS ++ R H++LPDD LEMCL+R PLTSL+NA LVCKKW+ +  T RFL
Sbjct: 115 KKNNRKYL--ADSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFL 172

Query: 181 QMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDD 240
           QMRREG  Q PWLFLF A+KDG  SG+IH  DVSQD+WHRI+  +LKGRFM+SV SI ++
Sbjct: 173 QMRREGSFQTPWLFLFAALKDGCSSGDIHGYDVSQDKWHRIETDLLKGRFMYSVTSIHEE 232

Query: 241 VYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPE 300
           +Y+VGG S       +D +SFK+H+ +LVFSP  K+W K+ASMR+ARS+PI+G +EV+ E
Sbjct: 233 IYIVGGRS-------MDRNSFKSHRGILVFSPSIKAWRKIASMRHARSLPIVGATEVTSE 285

Query: 301 FSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFI 360
           FS +   Q+ QDRRF  SR+GG SDVYEDPHRLS+RRQ RNS D          KS++ I
Sbjct: 286 FSTMQTKQNRQDRRFHLSRVGGESDVYEDPHRLSVRRQNRNSADQ------NGTKSHRLI 339

Query: 361 RQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGV 420
           RQK D+    +SKRFVLIA+GG G +DEPLDSGEIYDS +N W E+QRLP+ FGVVS G+
Sbjct: 340 RQKLDRLNRNSSKRFVLIAIGGTGLFDEPLDSGEIYDSATNTWSEMQRLPMGFGVVSCGI 399

Query: 421 VCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVS-----------WAR 469
           +CNGIFY YSE +KL+GY IERGFWI IQTSP PP V E+YPKLVS           W  
Sbjct: 400 ICNGIFYAYSENDKLSGYDIERGFWITIQTSPIPPRVHEFYPKLVSCNHRLFMLSVSWCD 459

Query: 470 SHVPQLE-----------------CWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFG 512
               Q+                   WT+VSVHPDAPMDW+A +V+D+N + G+EMFKIFG
Sbjct: 460 EGDGQIGRRNKAVRKLWELDLVYLTWTEVSVHPDAPMDWNATYVSDQNILMGIEMFKIFG 519

Query: 513 QVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL 557
           QVL F TVCDV  +  +W H+SRN    +L+  SC  K++A+LHL
Sbjct: 520 QVLSFFTVCDVLTEEASWRHVSRNQRSQKLNL-SCTNKTIALLHL 563

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9FII1\|FK118_ARATH F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1	Back alignment and function description

>sp\|Q9LFV5\|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1	Back alignment and function description

>sp\|Q9C6Z0\|FBK17_ARATH F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1	Back alignment and function description

>sp\|Q9M310\|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1	Back alignment and function description

>sp\|Q9CAG8\|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1	Back alignment and function description

>sp\|Q9M8L2\|FBK30_ARATH F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1	Back alignment and function description

>sp\|Q8LAW2\|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		557
255539270		583	hypothetical protein RCOM_1601660 [Ricin	0.996	0.951	0.736	0.0
224086066		581	predicted protein [Populus trichocarpa]	0.992	0.951	0.721	0.0
449452995		580	PREDICTED: F-box/kelch-repeat protein At	0.982	0.943	0.700	0.0
449489353		579	PREDICTED: LOW QUALITY PROTEIN: F-box/ke	0.980	0.943	0.694	0.0
225457590		580	PREDICTED: F-box/kelch-repeat protein At	0.992	0.953	0.717	0.0
356508586		579	PREDICTED: F-box/kelch-repeat protein At	0.980	0.943	0.679	0.0
357467123		583	F-box/kelch-repeat protein [Medicago tru	0.996	0.951	0.659	0.0
356517251		582	PREDICTED: F-box/kelch-repeat protein At	0.980	0.938	0.665	0.0
297795309		561	kelch repeat-containing F-box family pro	0.956	0.950	0.567	1e-180
15238934		563	F-box/kelch-repeat protein [Arabidopsis	0.958	0.948	0.557	1e-178

>gi\|255539270\|ref\|XP_002510700.1\| hypothetical protein RCOM_1601660 [Ricinus communis] gi\|223551401\|gb\|EEF52887.1\| hypothetical protein RCOM_1601660 [Ricinus communis]	Back alignment and taxonomy information

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/585 (73%), Positives = 481/585 (82%), Gaps = 30/585 (5%)

Query: 1   MICECPTGEEDSLRQDFESLSVSKRLVRSVSRKLRNKNLRNYDGDDEDDVKGVSLKCLTL 60
           M  E  +GE  SL +DFE+LSVS+RLVRSVS+KLR KN R    D+++ VKG+S++CL+L
Sbjct: 1   MFSERLSGEASSLNRDFEALSVSQRLVRSVSQKLRKKNNRCEGEDEDNSVKGISVRCLSL 60

Query: 61  YGRGGGCKVGAETGEECGD-SSSRRRSSASEEGKGYKPFCGSEEIGVGVDCFSYGVKEKF 119
           YGRGGGCKVGA+TGEE GD SS RR SSASEEGKGYKP CG+EE   GVDCFS+GV+E F
Sbjct: 61  YGRGGGCKVGADTGEEYGDPSSRRRSSSASEEGKGYKPICGTEE--SGVDCFSHGVREMF 118

Query: 120 WKKSNSKNLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRF 179
           WKK+N K+ EL+DSV+NSR+HIFLPDD LE+CLVR PL SLMNARLVCKKWR LTTTPRF
Sbjct: 119 WKKNNRKDFELEDSVQNSRLHIFLPDDILELCLVRLPLISLMNARLVCKKWRCLTTTPRF 178

Query: 180 LQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMD 239
           LQMR+EGL+QNPWLFLFGAVKDG+ SGEIHALDVSQD WHRID+ IL+GRFMFSV SI +
Sbjct: 179 LQMRQEGLYQNPWLFLFGAVKDGFCSGEIHALDVSQDHWHRIDSDILRGRFMFSVASIQE 238

Query: 240 DVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSP 299
           D+Y+VGGCSSLT FGRVD SS KTHK VLVFSPLTKSW KVASMRYARSMPILGISEVS 
Sbjct: 239 DIYIVGGCSSLTHFGRVDRSSCKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSS 298

Query: 300 EFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKF 359
           +FSI   HQ   +RRFPRSR+GGVSDVYEDPHRLSLRR YRN+ D  E S L +RKSYKF
Sbjct: 299 DFSIGHNHQHRHERRFPRSRIGGVSDVYEDPHRLSLRRHYRNAIDENEASSLHSRKSYKF 358

Query: 360 IRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSG 419
           IRQKSDQS AK  KRFVLIAVGGLGSWDEPLDSGEIYD VSNKW EIQ+L +DFGVV SG
Sbjct: 359 IRQKSDQSNAKGCKRFVLIAVGGLGSWDEPLDSGEIYDPVSNKWTEIQKLSIDFGVVCSG 418

Query: 420 VVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVS-----------W- 467
           V+CNGIFYVYSET+KL GY IERGFW+ IQT PFPP V EYYPKLVS           W 
Sbjct: 419 VICNGIFYVYSETDKLMGYDIERGFWVAIQTFPFPPRVHEYYPKLVSCNSRLFMLSVSWC 478

Query: 468 -----------ARSHVPQLE----CWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFG 512
                      A   + +L+     WT+VSVHPDAPMDW+AAFVAD+N IFGVEMFKIFG
Sbjct: 479 EGDGQIGQRNKAVRKLWELDLMYLTWTEVSVHPDAPMDWNAAFVADKNLIFGVEMFKIFG 538

Query: 513 QVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL 557
           QVLDFLTVC VS+   NWSHISRNHM +ELDA+SC+TKSLAVLHL
Sbjct: 539 QVLDFLTVCYVSDTGTNWSHISRNHMTHELDASSCITKSLAVLHL 583

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224086066\|ref\|XP_002307801.1\| predicted protein [Populus trichocarpa] gi\|222857250\|gb\|EEE94797.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449452995\|ref\|XP_004144244.1\| PREDICTED: F-box/kelch-repeat protein At5g42350-like isoform 1 [Cucumis sativus] gi\|449452997\|ref\|XP_004144245.1\| PREDICTED: F-box/kelch-repeat protein At5g42350-like isoform 2 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449489353\|ref\|XP_004158287.1\| PREDICTED: LOW QUALITY PROTEIN: F-box/kelch-repeat protein At5g42350-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225457590\|ref\|XP_002273276.1\| PREDICTED: F-box/kelch-repeat protein At5g42350-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356508586\|ref\|XP_003523036.1\| PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max]	Back alignment and taxonomy information

>gi\|357467123\|ref\|XP_003603846.1\| F-box/kelch-repeat protein [Medicago truncatula] gi\|355492894\|gb\|AES74097.1\| F-box/kelch-repeat protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356517251\|ref\|XP_003527302.1\| PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max]	Back alignment and taxonomy information

>gi\|297795309\|ref\|XP_002865539.1\| kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata] gi\|297311374\|gb\|EFH41798.1\| kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15238934|ref|NP_199050.1| F-box/kelch-repeat protein [Arabidopsis thaliana] gi|75170836|sp|Q9FII2.1|FK117_ARATH RecName: Full=F-box/kelch-repeat protein At5g42350 gi|16930697|gb|AAL32014.1|AF436832_1 AT5g42350/MDH9_4 [Arabidopsis thaliana] gi|9759471|dbj|BAB10476.1| unnamed protein product [Arabidopsis thaliana] gi|33589768|gb|AAQ22650.1| At5g42350/MDH9_4 [Arabidopsis thaliana] gi|332007416|gb|AED94799.1| F-box/kelch-repeat protein [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		557
TAIR\|locus:2162286		563	AT5G42350 "AT5G42350" [Arabido	0.958	0.948	0.529	1.3e-153
TAIR\|locus:2162301		563	AT5G42360 "AT5G42360" [Arabido	0.956	0.946	0.530	1.2e-152
TAIR\|locus:2198304		398	AT1G30090 "AT1G30090" [Arabido	0.217	0.304	0.318	2.3e-07
TAIR\|locus:2143256		448	AT5G15710 "AT5G15710" [Arabido	0.448	0.558	0.242	1.7e-06
TAIR\|locus:2082797		411	HWS "HAWAIIAN SKIRT" [Arabidop	0.152	0.206	0.344	2e-06
TAIR\|locus:2148483		413	AT5G26960 "AT5G26960" [Arabido	0.174	0.234	0.317	2.2e-06
TAIR\|locus:2198958		354	AT1G80440 "AT1G80440" [Arabido	0.236	0.372	0.289	1.5e-05
TAIR\|locus:2008773		376	AT1G67480 "AT1G67480" [Arabido	0.245	0.364	0.234	3.7e-05
TAIR\|locus:2032855		383	AT1G16250 "AT1G16250" [Arabido	0.245	0.357	0.272	0.00013
TAIR\|locus:2046683		372	AFR "ATTENUATED FAR-RED RESPON	0.287	0.430	0.235	0.00013

TAIR\|locus:2162286 AT5G42350 "AT5G42350" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
 Identities = 310/585 (52%), Positives = 395/585 (67%)

Query:     1 MICECPTGEEDSLRQDFEXXXXXXXXXXXXXXXXXNKNLRNYDGDDEDDVKGVSLKCLTL 60
             MI E P G E+S+RQD E                  K  +    +DE+  +G ++ CL++
Sbjct:     2 MISEKPLGVEESIRQDLEVLTVSRRLVKSVSQKLKKKIHKTEVVEDEEIARG-AVNCLSI 60

Query:    61 YGRGGGCKVGAETGEECGDXXXXXXXXXXEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFW 120
                  GC+V A+TGE+  D          EEGKG    CG+EE    +DCFSYGV+E+FW
Sbjct:    61 ---SVGCRV-ADTGEDFEDSSNKRWSSASEEGKGLMTICGTEE--TRLDCFSYGVRERFW 114

Query:   121 KKSNSKNLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFL 180
             KK+N K L   DS ++ R H++LPDD LEMCL+R PLTSL+NA LVCKKW+ +  T RFL
Sbjct:   115 KKNNRKYLA--DSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFL 172

Query:   181 QMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDD 240
             QMRREG  Q PWLFLF A+KDG  SG+IH  DVSQD+WHRI+  +LKGRFM+SV SI ++
Sbjct:   173 QMRREGSFQTPWLFLFAALKDGCSSGDIHGYDVSQDKWHRIETDLLKGRFMYSVTSIHEE 232

Query:   241 VYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPE 300
             +Y+VGG S       +D +SFK+H+ +LVFSP  K+W K+ASMR+ARS+PI+G +EV+ E
Sbjct:   233 IYIVGGRS-------MDRNSFKSHRGILVFSPSIKAWRKIASMRHARSLPIVGATEVTSE 285

Query:   301 FSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFI 360
             FS +   Q+ QDRRF  SR+GG SDVYEDPHRLS+RRQ RNS D   G+     KS++ I
Sbjct:   286 FSTMQTKQNRQDRRFHLSRVGGESDVYEDPHRLSVRRQNRNSADQ-NGT-----KSHRLI 339

Query:   361 RQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGV 420
             RQK D+    +SKRFVLIA+GG G +DEPLDSGEIYDS +N W E+QRLP+ FGVVS G+
Sbjct:   340 RQKLDRLNRNSSKRFVLIAIGGTGLFDEPLDSGEIYDSATNTWSEMQRLPMGFGVVSCGI 399

Query:   421 VCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVS-----------WA- 468
             +CNGIFY YSE +KL+GY IERGFWI IQTSP PP V E+YPKLVS           W  
Sbjct:   400 ICNGIFYAYSENDKLSGYDIERGFWITIQTSPIPPRVHEFYPKLVSCNHRLFMLSVSWCD 459

Query:   469 --------RSHVP----QLEC----WTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFG 512
                     R+       +L+     WT+VSVHPDAPMDW+A +V+D+N + G+EMFKIFG
Sbjct:   460 EGDGQIGRRNKAVRKLWELDLVYLTWTEVSVHPDAPMDWNATYVSDQNILMGIEMFKIFG 519

Query:   513 QVLDFLTVCDVSEKWMNWSHISRNHMDYELDATSCMTKSLAVLHL 557
             QVL F TVCDV  +  +W H+SRN    +L+  SC  K++A+LHL
Sbjct:   520 QVLSFFTVCDVLTEEASWRHVSRNQRSQKLNL-SCTNKTIALLHL 563

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2162301 AT5G42360 "AT5G42360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198304 AT1G30090 "AT1G30090" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2148483 AT5G26960 "AT5G26960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198958 AT1G80440 "AT1G80440" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032855 AT1G16250 "AT1G16250" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FII1	FK118_ARATH	No assigned EC number	0.5563	0.9569	0.9467	yes	no
Q9FII2	FK117_ARATH	No assigned EC number	0.5572	0.9587	0.9484	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		557
pfam00646		48	pfam00646, F-box, F-box domain	2e-05
smart00256		41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-05
pfam13964		50	pfam13964, Kelch_6, Kelch motif	2e-05
PHA03098		534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-04
pfam01344		46	pfam01344, Kelch_1, Kelch motif	0.001
pfam13418		49	pfam13418, Kelch_4, Galactose oxidase, central dom	0.002
smart00612		47	smart00612, Kelch, Kelch domain	0.002
pfam12937		47	pfam12937, F-box-like, F-box-like	0.003

>gnl\|CDD\|201368 pfam00646, F-box, F-box domain	Back alignment and domain information

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 143 LPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFLQMR 183
           LPDD L   L R     L+   LV K+WR L  + +  + R
Sbjct: 6   LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKR 46

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl\|CDD\|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets	Back alignment and domain information

>gnl\|CDD\|206134 pfam13964, Kelch_6, Kelch motif	Back alignment and domain information

>gnl\|CDD\|222983 PHA03098, PHA03098, kelch-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|201739 pfam01344, Kelch_1, Kelch motif	Back alignment and domain information

>gnl\|CDD\|205596 pfam13418, Kelch_4, Galactose oxidase, central domain	Back alignment and domain information

>gnl\|CDD\|128874 smart00612, Kelch, Kelch domain	Back alignment and domain information

>gnl\|CDD\|221867 pfam12937, F-box-like, F-box-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		557
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713		557	hypothetical protein; Provisional	100.0
PHA03098		534	kelch-like protein; Provisional	100.0
PHA02790		480	Kelch-like protein; Provisional	100.0
KOG4441		571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713		557	hypothetical protein; Provisional	100.0
PLN02153		341	epithiospecifier protein	100.0
TIGR03547		346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
TIGR03548		323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PLN02193		470	nitrile-specifier protein	100.0
PRK14131		376	N-acetylneuraminic acid mutarotase; Provisional	100.0
PLN02153		341	epithiospecifier protein	99.98
PHA03098		534	kelch-like protein; Provisional	99.97
PLN02193		470	nitrile-specifier protein	99.97
TIGR03547		346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
TIGR03548		323	mutarot_permut cyclically-permuted mutatrotase fam	99.96
PRK14131		376	N-acetylneuraminic acid mutarotase; Provisional	99.95
PHA02790		480	Kelch-like protein; Provisional	99.93
KOG4693		392	consensus Uncharacterized conserved protein, conta	99.91
KOG4693		392	consensus Uncharacterized conserved protein, conta	99.9
KOG0379		482	consensus Kelch repeat-containing proteins [Genera	99.86
KOG0379		482	consensus Kelch repeat-containing proteins [Genera	99.85
KOG4152		830	consensus Host cell transcription factor HCFC1 [Ce	99.85
KOG1230		521	consensus Protein containing repeated kelch motifs	99.83
KOG1230		521	consensus Protein containing repeated kelch motifs	99.76
KOG4152		830	consensus Host cell transcription factor HCFC1 [Ce	99.65
COG3055		381	Uncharacterized protein conserved in bacteria [Fun	99.58
COG3055		381	Uncharacterized protein conserved in bacteria [Fun	99.19
PF13964		50	Kelch_6: Kelch motif	99.15
PF01344		47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.9
PF13964		50	Kelch_6: Kelch motif	98.89
TIGR01640		230	F_box_assoc_1 F-box protein interaction domain. Th	98.74
PF01344		47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.69
PF07646		49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.61
PF13418		49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.59
KOG2437		723	consensus Muskelin [Signal transduction mechanisms	98.54
PF13415		49	Kelch_3: Galactose oxidase, central domain	98.52
smart00612		47	Kelch Kelch domain.	98.44
PF07646		49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.42
KOG2437		723	consensus Muskelin [Signal transduction mechanisms	98.36
smart00612		47	Kelch Kelch domain.	98.35
PF13418		49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.33
PF13415		49	Kelch_3: Galactose oxidase, central domain	98.27
PF07250		243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.98
PF13854		42	Kelch_5: Kelch motif	97.8
PLN02772		398	guanylate kinase	97.73
PLN02772		398	guanylate kinase	97.65
TIGR01640		230	F_box_assoc_1 F-box protein interaction domain. Th	97.65
PF13854		42	Kelch_5: Kelch motif	97.45
PF07250		243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.42
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	97.08
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	96.87
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	96.6
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	96.55
PF07893		342	DUF1668: Protein of unknown function (DUF1668); In	96.43
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	96.41
PF03089		337	RAG2: Recombination activating protein 2; InterPro	95.79
PF07893		342	DUF1668: Protein of unknown function (DUF1668); In	95.62
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.72
PRK11138		394	outer membrane biogenesis protein BamB; Provisiona	94.18
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	94.01
TIGR03300		377	assembly_YfgL outer membrane assembly lipoprotein	93.92
PRK13684		334	Ycf48-like protein; Provisional	93.49
PF12768		281	Rax2: Cortical protein marker for cell polarity	93.33
PF12768		281	Rax2: Cortical protein marker for cell polarity	92.93
TIGR03866		300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	92.89
PF08450		246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.32
PF13360		238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	90.13
PF03089		337	RAG2: Recombination activating protein 2; InterPro	90.1
PRK11028		330	6-phosphogluconolactonase; Provisional	89.73
PF08268		129	FBA_3: F-box associated domain; InterPro: IPR01318	88.74
KOG0310		487	consensus Conserved WD40 repeat-containing protein	87.08
TIGR02658		352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	86.38
PRK13684		334	Ycf48-like protein; Provisional	84.96
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	84.46
smart00284		255	OLF Olfactomedin-like domains.	83.67
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	83.37
PLN00033		398	photosystem II stability/assembly factor; Provisio	80.03

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.2e-54  Score=476.65  Aligned_cols=425  Identities=19%  Similarity=0.250  Sum_probs=351.8

Q ss_pred             hhhhHHHHHHHH---HHHhccCCCCCCCCCcccccccceeeeee--ecCCCceeeeccCCCcCCCCCcccCCCccccCCC
Q 035526           20 LSVSKRLVRSVS---RKLRNKNLRNYDGDDEDDVKGVSLKCLTL--YGRGGGCKVGAETGEECGDSSSRRRSSASEEGKG   94 (557)
Q Consensus        20 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (557)
                      +.|+..+|++|+   .+|++..++.+|++|+. ++.+.-|||.+  ||..++|.-+.....+|+..++.+ ....+|   
T Consensus       100 i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~-~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~-v~~~ee---  174 (571)
T KOG4441|consen  100 LEISEDNVQELLEAASLLQIPEVVDACCEFLE-SQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAE-VSKTEE---  174 (571)
T ss_pred             EEechHhHHHHHHHHHHhhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-HhccHH---
Confidence            568899999999   88999999999999999 78899999987  999999998888888898888888 555555   


Q ss_pred             CCCCCCCcccc---------e-eeeeeeccceeceeeecCCc--cccccccccccCCCCCCCHHHHHHHHhcCCccchhh
Q 035526           95 YKPFCGSEEIG---------V-GVDCFSYGVKEKFWKKSNSK--NLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMN  162 (557)
Q Consensus        95 ~~~~c~~e~~~---------~-~~~~~~~~~~~~~W~~~~~~--~~~l~~l~~~~r~~~~lp~dl~~~il~rLP~~sl~~  162 (557)
                      |+.+.-++...         . .-+.|.   ..+.|++||.+  ..|++++++++|++++.|.++.+.+..    ..+++
T Consensus       175 fl~L~~~~l~~ll~~d~l~v~~E~~vf~---a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~----~~~~~  247 (571)
T KOG4441|consen  175 FLLLSLEELIGLLSSDDLNVDSEEEVFE---AAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVES----EPLIK  247 (571)
T ss_pred             hhCCCHHHHHhhccccCCCcCCHHHHHH---HHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhh----hhhhc
Confidence            55533222211         0 011232   23569999987  589999999999988777777776654    33444


Q ss_pred             hhhccc-------ccccccCChhhhhhhhccc--cCCCeEEEEeeecC-CcccceEEEeeCCCCceEEccCCCcCcceee
Q 035526          163 ARLVCK-------KWRYLTTTPRFLQMRREGL--HQNPWLFLFGAVKD-GYYSGEIHALDVSQDQWHRIDASILKGRFMF  232 (557)
Q Consensus       163 ~~~vck-------~W~~l~~sp~~~~~~~~~~--~~~~~L~v~GG~~~-~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~  232 (557)
                      ....|+       +|+.+.......+.++...  ...+.||++||... ....+.+..|||.++.|..+++||.+ |..+
T Consensus       248 ~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~  326 (571)
T KOG4441|consen  248 RDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRV  326 (571)
T ss_pred             cCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccc
Confidence            444444       4555544322222222222  34788999999875 56789999999999999999999976 9999


Q ss_pred             EEEEECCEEEEEcccC-CCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCC
Q 035526          233 SVVSIMDDVYVVGGCS-SLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQ  311 (557)
Q Consensus       233 s~a~~~~~IYViGG~~-~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~  311 (557)
                      ++++++|+|||+||.+ +.           ...+++++|||.+++|+++|+|+.+|..+++++++  |            
T Consensus       327 ~~~~~~~~lYv~GG~~~~~-----------~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~--g------------  381 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGS-----------DRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD--G------------  381 (571)
T ss_pred             cEEEECCEEEEEccccCCC-----------cccceEEEecCCCCceeccCCccCccccceeEEEC--C------------
Confidence            9999999999999998 44           36789999999999999999999999998888887  3            


Q ss_pred             CCCCcEEEEcccccccCCCCcccceeeccccCCcccc--cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCC
Q 035526          312 DRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEP  389 (557)
Q Consensus       312 ~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~  389 (557)
                          .||++||.+    +...++++|+|||.+|+|+.  +|+.+|++++++++++           +||++||.++....
T Consensus       382 ----~iYavGG~d----g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g-----------~iYi~GG~~~~~~~  442 (571)
T KOG4441|consen  382 ----KLYAVGGFD----GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGG-----------KLYIIGGGDGSSNC  442 (571)
T ss_pred             ----EEEEEeccc----cccccccEEEecCCCCcccccCCCCcceeeeEEEEECC-----------EEEEEcCcCCCccc
Confidence                999999986    88899999999999999999  7888999999999997           99999999877668


Q ss_pred             CceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCC------eEEEEECCCCcEEeccCCCCCCcccccCCE
Q 035526          390 LDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETE------KLAGYYIERGFWIGIQTSPFPPCVIEYYPK  463 (557)
Q Consensus       390 l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~------~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~  463 (557)
                      ++++|+|||.+|+|+.+++|+.+|.+++ +++++++||++||.+      .+++|||++++|+.+.+|+.++        
T Consensus       443 l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r--------  513 (571)
T KOG4441|consen  443 LNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR--------  513 (571)
T ss_pred             cceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc--------
Confidence            9999999999999999999999999876 578899999999974      5999999999999998876555        


Q ss_pred             EEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEEecCCCC-CCceecccCCcCcc
Q 035526          464 LVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKW-MNWSHISRNHMDYE  541 (557)
Q Consensus       464 lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy~~~d~~-~~W~~i~~~~~~~~  541 (557)
                                                 .++++++.+++||++||++ +...++++++|   ||+ ++|+....+...+.
T Consensus       514 ---------------------------s~~g~~~~~~~ly~vGG~~-~~~~l~~ve~y---dp~~d~W~~~~~~~~~~~  561 (571)
T KOG4441|consen  514 ---------------------------SAVGVVVLGGKLYAVGGFD-GNNNLNTVECY---DPETDTWTEVTEPESGRG  561 (571)
T ss_pred             ---------------------------ccccEEEECCEEEEEeccc-CccccceeEEc---CCCCCceeeCCCcccccc
Confidence                                       3456779999999999998 88999999999   999 99999988544444

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PHA02713 hypothetical protein; Provisional	Back alignment and domain information

>PLN02153 epithiospecifier protein	Back alignment and domain information

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family	Back alignment and domain information

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein	Back alignment and domain information

>PLN02193 nitrile-specifier protein	Back alignment and domain information

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional	Back alignment and domain information

>PLN02153 epithiospecifier protein	Back alignment and domain information

>PHA03098 kelch-like protein; Provisional	Back alignment and domain information

>PLN02193 nitrile-specifier protein	Back alignment and domain information

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family	Back alignment and domain information

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein	Back alignment and domain information

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional	Back alignment and domain information

>PHA02790 Kelch-like protein; Provisional	Back alignment and domain information

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]	Back alignment and domain information

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]	Back alignment and domain information

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]	Back alignment and domain information

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]	Back alignment and domain information

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]	Back alignment and domain information

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]	Back alignment and domain information

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]	Back alignment and domain information

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF13964 Kelch_6: Kelch motif	Back alignment and domain information

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []	Back alignment and domain information

>PF13964 Kelch_6: Kelch motif	Back alignment and domain information

>TIGR01640 F_box_assoc_1 F-box protein interaction domain	Back alignment and domain information

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []	Back alignment and domain information

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []	Back alignment and domain information

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B	Back alignment and domain information

>KOG2437 consensus Muskelin [Signal transduction mechanisms]	Back alignment and domain information

>PF13415 Kelch_3: Galactose oxidase, central domain	Back alignment and domain information

>smart00612 Kelch Kelch domain	Back alignment and domain information

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []	Back alignment and domain information

>KOG2437 consensus Muskelin [Signal transduction mechanisms]	Back alignment and domain information

>smart00612 Kelch Kelch domain	Back alignment and domain information

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B	Back alignment and domain information

>PF13415 Kelch_3: Galactose oxidase, central domain	Back alignment and domain information

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes	Back alignment and domain information

>PF13854 Kelch_5: Kelch motif	Back alignment and domain information

>PLN02772 guanylate kinase	Back alignment and domain information

>PLN02772 guanylate kinase	Back alignment and domain information

>TIGR01640 F_box_assoc_1 F-box protein interaction domain	Back alignment and domain information

>PF13854 Kelch_5: Kelch motif	Back alignment and domain information

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination	Back alignment and domain information

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>PRK11138 outer membrane biogenesis protein BamB; Provisional	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL	Back alignment and domain information

>PRK13684 Ycf48-like protein; Provisional	Back alignment and domain information

>PF12768 Rax2: Cortical protein marker for cell polarity	Back alignment and domain information

>PF12768 Rax2: Cortical protein marker for cell polarity	Back alignment and domain information

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein	Back alignment and domain information

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species	Back alignment and domain information

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A	Back alignment and domain information

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination	Back alignment and domain information

>PRK11028 6-phosphogluconolactonase; Provisional	Back alignment and domain information

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants	Back alignment and domain information

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]	Back alignment and domain information

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain	Back alignment and domain information

>PRK13684 Ycf48-like protein; Provisional	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>smart00284 OLF Olfactomedin-like domains	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN00033 photosystem II stability/assembly factor; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		557
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	3e-10
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	5e-07
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	2e-06
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	2e-06
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	3e-06
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	6e-04
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	5e-10
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	1e-07
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	2e-07
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	3e-06
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	9e-06
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	8e-05
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	7e-10
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	3e-08
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	1e-07
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	9e-06
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	1e-05
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	9e-05
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	4e-09
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	8e-08
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	9e-08
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	9e-06
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	4e-05
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	6e-04
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	4e-09
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	3e-08
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	7e-08
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	8e-06
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	1e-05
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	2e-04
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	4e-07
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	6e-07
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	1e-06
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	1e-06
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	6e-06
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	2e-04
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	3e-04
2uvk_A		357	YJHT; unknown function, hypothetical protein, sial	5e-07
2uvk_A		357	YJHT; unknown function, hypothetical protein, sial	9e-05
2uvk_A		357	YJHT; unknown function, hypothetical protein, sial	1e-04

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308	Back alignment and structure

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 15/121 (12%)

Query: 170 WRYLT--TTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILK 227
             + +    PR              ++  G          + A + S   W R+ A +  
Sbjct: 6   HHHHSSGLVPR----GSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRL-ADLQV 59

Query: 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYAR 287
            R   +   +   +Y VGG ++                 +  ++P+T  W   A M   R
Sbjct: 60  PRSGLAGCVVGGLLYAVGGRNN-------SPDGNTDSSALDCYNPMTNQWSPCAPMSVPR 112

Query: 288 S 288
           +
Sbjct: 113 N 113

PyMOL of 1zgk

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308	Back alignment and structure

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308	Back alignment and structure

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308	Back alignment and structure

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308	Back alignment and structure

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301	Back alignment and structure

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357	Back alignment and structure

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357	Back alignment and structure

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		557
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A		302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A		308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A		306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2uvk_A		357	YJHT; unknown function, hypothetical protein, sial	100.0
4asc_A		315	Kelch repeat and BTB domain-containing protein 5;	100.0
2vpj_A		301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2woz_A		318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A		357	YJHT; unknown function, hypothetical protein, sial	99.98
2zwa_A		695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.97
1k3i_A		656	Galactose oxidase precursor; blade beta propeller,	99.96
2zwa_A		695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.95
1k3i_A		656	Galactose oxidase precursor; blade beta propeller,	99.94
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.15
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.0
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.76
3dsm_A		328	Uncharacterized protein bacuni_02894; seven_blated	97.71
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	97.48
3mbr_X		243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.2
3dsm_A		328	Uncharacterized protein bacuni_02894; seven_blated	97.17
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	96.94
3q7m_A		376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.92
3nol_A		262	Glutamine cyclotransferase; beta-propeller, glutam	96.63
1l0q_A		391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.54
3u4y_A		331	Uncharacterized protein; structural genomics, PSI-	96.23
3jrp_A		379	Fusion protein of protein transport protein SEC13	96.15
1ri6_A		343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.07
3nok_A		268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.94
3hfq_A		347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.64
2z2n_A		299	Virginiamycin B lyase; seven-bladed beta-propeller	95.47
3bws_A		433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.46
3bws_A		433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.38
2iwa_A		266	Glutamine cyclotransferase; pyroglutamate, acyltra	95.37
3scy_A		361	Hypothetical bacterial 6-phosphogluconolactonase;	95.36
3vgz_A		353	Uncharacterized protein YNCE; beta-propeller, prot	95.24
1jmx_B		349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	94.77
2hqs_A		415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.74
3hve_A		256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	94.32
3nol_A		262	Glutamine cyclotransferase; beta-propeller, glutam	94.27
2xbg_A		327	YCF48-like protein; photosynthesis, photosystem II	94.27
2pm7_B		297	Protein transport protein SEC13, protein transport	94.11
1k8k_C		372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	94.06
3jrp_A		379	Fusion protein of protein transport protein SEC13	94.03
1l0q_A		391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.02
1gxr_A		337	ESG1, transducin-like enhancer protein 1; transcri	93.91
4ery_A		312	WD repeat-containing protein 5; WD40, WIN motif, b	93.87
1gxr_A		337	ESG1, transducin-like enhancer protein 1; transcri	93.67
3jro_A		753	Fusion protein of protein transport protein SEC13	93.64
3i3n_A		279	Kelch-like protein 11; structural genomics, BTB, K	93.5
3mbr_X		243	Glutamine cyclotransferase; beta-propeller; 1.44A	93.47
1k8k_C		372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.26
2z2n_A		299	Virginiamycin B lyase; seven-bladed beta-propeller	93.2
4aez_A		401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.11
3vgz_A		353	Uncharacterized protein YNCE; beta-propeller, prot	93.11
1rwi_B		270	Serine/threonine-protein kinase PKND; beta propell	93.02
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	92.84
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	92.75
3q7m_A		376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.7
3bg1_A		316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.58
3dwl_C		377	Actin-related protein 2/3 complex subunit 1; prope	92.44
2iwa_A		266	Glutamine cyclotransferase; pyroglutamate, acyltra	92.12
3g4e_A		297	Regucalcin; six bladed beta-propeller, gluconolcat	92.09
3ei3_B		383	DNA damage-binding protein 2; UV-damage, DDB, nucl	91.85
4a11_B		408	DNA excision repair protein ERCC-8; DNA binding pr	91.65
2pm9_A		416	Protein WEB1, protein transport protein SEC31; bet	91.63
3vl1_A		420	26S proteasome regulatory subunit RPN14; beta-prop	91.33
3fm0_A		345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	91.3
2qc5_A		300	Streptogramin B lactonase; beta propeller, lyase;	91.19
2qc5_A		300	Streptogramin B lactonase; beta propeller, lyase;	90.87
1q7f_A		286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	90.76
4g56_B		357	MGC81050 protein; protein arginine methyltransfera	90.76
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	90.49
2dg1_A		333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	90.17
4e54_B		435	DNA damage-binding protein 2; beta barrel, double	90.0
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	89.98
1q7f_A		286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	89.84
3u4y_A		331	Uncharacterized protein; structural genomics, PSI-	89.52
3jro_A		753	Fusion protein of protein transport protein SEC13	89.12
2ece_A		462	462AA long hypothetical selenium-binding protein;	89.03
4a2l_A		795	BT_4663, two-component system sensor histidine kin	89.01
4g56_B		357	MGC81050 protein; protein arginine methyltransfera	89.0
3nok_A		268	Glutaminyl cyclase; beta-propeller, cyclotransfera	88.84
1rwi_B		270	Serine/threonine-protein kinase PKND; beta propell	88.35
4gqb_B		344	Methylosome protein 50; TIM barrel, beta-propeller	88.3
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	88.14
3v9f_A		781	Two-component system sensor histidine kinase/RESP	87.71
3dwl_C		377	Actin-related protein 2/3 complex subunit 1; prope	87.5
2hes_X		330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	87.09
3f3f_A		351	Nucleoporin SEH1; structural protein, protein comp	86.95
2aq5_A		402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	86.79
3e5z_A		296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	86.22
2aq5_A		402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	86.11
3mkq_A		814	Coatomer beta'-subunit; beta-propeller, alpha-sole	85.92
3ow8_A		321	WD repeat-containing protein 61; structural genomi	85.66
4a2l_A		795	BT_4663, two-component system sensor histidine kin	85.27
1sq9_A		397	Antiviral protein SKI8; WD repeat, beta-transducin	84.95
3ow8_A		321	WD repeat-containing protein 61; structural genomi	84.56
4gqb_B		344	Methylosome protein 50; TIM barrel, beta-propeller	84.46
3bg1_A		316	Protein SEC13 homolog; NPC, transport, WD repeat,	84.33
1kb0_A		677	Quinohemoprotein alcohol dehydrogenase; beta-prope	84.28
1vyh_C		410	Platelet-activating factor acetylhydrolase IB alph	83.51
1r5m_A		425	SIR4-interacting protein SIF2; transcription corep	83.39
1pjx_A		314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	83.15
3sfz_A		1249	APAF-1, apoptotic peptidase activating factor 1; a	83.14
3v9f_A		781	Two-component system sensor histidine kinase/RESP	83.12
3sfz_A		1249	APAF-1, apoptotic peptidase activating factor 1; a	83.1
4ery_A		312	WD repeat-containing protein 5; WD40, WIN motif, b	82.97
1ri6_A		343	Putative isomerase YBHE; 7-bladed propeller, enzym	82.94
3zwl_B		369	Eukaryotic translation initiation factor 3 subuni;	82.86
1pby_B		337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	82.2
1got_B		340	GT-beta; complex (GTP-binding/transducer), G prote	81.85
1n7d_A		699	LDL receptor, low-density lipoprotein receptor; fa	81.59
2hes_X		330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	81.28
4aow_A		340	Guanine nucleotide-binding protein subunit beta-2;	81.25
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	80.94
1got_B		340	GT-beta; complex (GTP-binding/transducer), G prote	80.6
3fm0_A		345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	80.19
1pgu_A		615	Actin interacting protein 1; WD repeat, seven-blad	80.14

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A	Back alignment and structure

Probab=100.00  E-value=2.2e-39  Score=330.60  Aligned_cols=272  Identities=17%  Similarity=0.227  Sum_probs=233.7

Q ss_pred             cCCCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceE
Q 035526          188 HQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRV  267 (557)
Q Consensus       188 ~~~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v  267 (557)
                      ..++.||+|||. .+...+++++||+.+++|..++++|.+ |..|++++++++|||+||.....       ......+++
T Consensus        22 ~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~-------~~~~~~~~~   92 (308)
T 1zgk_A           22 KVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVP-RSGLAGCVVGGLLYAVGGRNNSP-------DGNTDSSAL   92 (308)
T ss_dssp             CCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCEEEET-------TEEEECCCE
T ss_pred             CCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCCCcc-cccceEEEECCEEEEECCCcCCC-------CCCeecceE
Confidence            348899999998 455678999999999999999999876 99999999999999999973100       001356799


Q ss_pred             EEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCccc
Q 035526          268 LVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFE  347 (557)
Q Consensus       268 ~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~  347 (557)
                      ++||+.+++|+++++|+.+|..+++++++  +                ++|++||..    +...++.+++||+.+++|+
T Consensus        93 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~----------------~iyv~GG~~----~~~~~~~~~~yd~~~~~W~  150 (308)
T 1zgk_A           93 DCYNPMTNQWSPCAPMSVPRNRIGVGVID--G----------------HIYAVGGSH----GCIHHNSVERYEPERDEWH  150 (308)
T ss_dssp             EEEETTTTEEEECCCCSSCCBTCEEEEET--T----------------EEEEECCEE----TTEECCCEEEEETTTTEEE
T ss_pred             EEECCCCCeEeECCCCCcCccccEEEEEC--C----------------EEEEEcCCC----CCcccccEEEECCCCCeEe
Confidence            99999999999999999999998888775  3                899999975    4456889999999999999


Q ss_pred             c--cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCE
Q 035526          348 G--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGI  425 (557)
Q Consensus       348 ~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~  425 (557)
                      .  ++|.+|..|+++.+++           +||++||.+... .++++++||+.+++|+.++++|.++..+++ ++++++
T Consensus       151 ~~~~~p~~r~~~~~~~~~~-----------~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~  217 (308)
T 1zgk_A          151 LVAPMLTRRIGVGVAVLNR-----------LLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIRSGAGV-CVLHNC  217 (308)
T ss_dssp             ECCCCSSCCBSCEEEEETT-----------EEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCCBSCEE-EEETTE
T ss_pred             ECCCCCccccceEEEEECC-----------EEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCCCCCccccceE-EEECCE
Confidence            8  7888999999999986           999999997664 588999999999999999999999988764 677999


Q ss_pred             EEEEecC------CeEEEEECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeC
Q 035526          426 FYVYSET------EKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADR  499 (557)
Q Consensus       426 lYv~GG~------~~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~  499 (557)
                      |||+||.      +.+++||+++++|+.++.+|.++                                   .++++++.+
T Consensus       218 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-----------------------------------~~~~~~~~~  262 (308)
T 1zgk_A          218 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR-----------------------------------SALGITVHQ  262 (308)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC-----------------------------------BSCEEEEET
T ss_pred             EEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc-----------------------------------cceEEEEEC
Confidence            9999996      58999999999999998776554                                   234556789


Q ss_pred             CEEEEEceeeEeceEeeeEEEEecCCCC-CCceecccCCcCccc
Q 035526          500 NHIFGVEMFKIFGQVLDFLTVCDVSEKW-MNWSHISRNHMDYEL  542 (557)
Q Consensus       500 ~~iyvvgG~~~~g~~~~~v~vy~~~d~~-~~W~~i~~~~~~~~~  542 (557)
                      ++||++||++ ....++++++|   |++ ++|+.++.|+..+..
T Consensus       263 ~~i~v~GG~~-~~~~~~~v~~y---d~~~~~W~~~~~~p~~r~~  302 (308)
T 1zgk_A          263 GRIYVLGGYD-GHTFLDSVECY---DPDTDTWSEVTRMTSGRSG  302 (308)
T ss_dssp             TEEEEECCBC-SSCBCCEEEEE---ETTTTEEEEEEECSSCCBS
T ss_pred             CEEEEEcCcC-CCcccceEEEE---cCCCCEEeecCCCCCCccc
Confidence            9999999987 56678899999   999 999999999988765

PyMOL of 1zgk

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}	Back alignment and structure

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}	Back alignment and structure

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A	Back alignment and structure

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}	Back alignment and structure

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}	Back alignment and structure

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}	Back alignment and structure

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}	Back alignment and structure

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}	Back alignment and structure

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}	Back alignment and structure

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*	Back alignment and structure

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A	Back alignment and structure

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*	Back alignment and structure

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}	Back alignment and structure

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A	Back alignment and structure

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A	Back alignment and structure

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3	Back alignment and structure

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}	Back alignment and structure

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1	Back alignment and structure

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}	Back alignment and structure

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}	Back alignment and structure

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*	Back alignment and structure

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}	Back alignment and structure

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}	Back alignment and structure

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*	Back alignment and structure

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A	Back alignment and structure

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*	Back alignment and structure

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*	Back alignment and structure

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A	Back alignment and structure

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B	Back alignment and structure

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A	Back alignment and structure

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}	Back alignment and structure

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A	Back alignment and structure

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C	Back alignment and structure

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3	Back alignment and structure

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A	Back alignment and structure

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...	Back alignment and structure

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A	Back alignment and structure

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A	Back alignment and structure

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}	Back alignment and structure

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C	Back alignment and structure

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*	Back alignment and structure

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}	Back alignment and structure

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*	Back alignment and structure

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A	Back alignment and structure

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A	Back alignment and structure

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}	Back alignment and structure

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*	Back alignment and structure

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B	Back alignment and structure

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*	Back alignment and structure

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}	Back alignment and structure

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}	Back alignment and structure

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A	Back alignment and structure

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}	Back alignment and structure

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}	Back alignment and structure

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}	Back alignment and structure

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1	Back alignment and structure

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A	Back alignment and structure

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1	Back alignment and structure

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}	Back alignment and structure

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}	Back alignment and structure

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*	Back alignment and structure

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}	Back alignment and structure

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}	Back alignment and structure

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A	Back alignment and structure

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}	Back alignment and structure

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A	Back alignment and structure

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A	Back alignment and structure

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}	Back alignment and structure

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A	Back alignment and structure

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A	Back alignment and structure

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}	Back alignment and structure

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*	Back alignment and structure

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X	Back alignment and structure

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}	Back alignment and structure

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}	Back alignment and structure

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A	Back alignment and structure

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1	Back alignment and structure

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1	Back alignment and structure

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}	Back alignment and structure

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...	Back alignment and structure

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*	Back alignment and structure

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*	Back alignment and structure

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...	Back alignment and structure

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1	Back alignment and structure

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}	Back alignment and structure

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*	Back alignment and structure

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*	Back alignment and structure

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A	Back alignment and structure

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*	Back alignment and structure

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}	Back alignment and structure

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		557
d1fs1a1		41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	8e-06
d1zgka1		288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	0.003

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41	Back information, alignment and structure


class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 8e-06
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 143 LPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRF 179
           LPD+ L        L  L+    VCK+W  L +    
Sbjct: 4   LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

PyMOL of d1fs1a1

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		557
d1zgka1		288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1		288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.97
d1k3ia3		387	Galactose oxidase, central domain {Fungi (Fusarium	99.95
d1k3ia3		387	Galactose oxidase, central domain {Fungi (Fusarium	99.94
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.37
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	95.77
d1l0qa2		301	Surface layer protein {Archaeon Methanosarcina maz	95.24
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	94.67
d1k8kc_		371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.15
d1pbyb_		337	Quinohemoprotein amine dehydrogenase B chain {Para	93.37
d2ghsa1		295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	93.2
d1nr0a2		299	Actin interacting protein 1 {Nematode (Caenorhabdi	90.77
d1jmxb_		346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.78
d1nr0a2		299	Actin interacting protein 1 {Nematode (Caenorhabdi	85.88
d1k8kc_		371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	85.59
d1pjxa_		314	Diisopropylfluorophosphatase (phosphotriesterase,	85.15
d1nr0a1		311	Actin interacting protein 1 {Nematode (Caenorhabdi	84.14
d1nr0a1		311	Actin interacting protein 1 {Nematode (Caenorhabdi	80.77
d2dg1a1		319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	80.38
d1l0qa2		301	Surface layer protein {Archaeon Methanosarcina maz	80.05

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-36  Score=297.28  Aligned_cols=272  Identities=17%  Similarity=0.222  Sum_probs=232.3

Q ss_pred             CCCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEE
Q 035526          189 QNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVL  268 (557)
Q Consensus       189 ~~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~  268 (557)
                      .+..||||||... ...+++++||+.+++|++++++|.+ |.+|++++++++|||+||.....       .....+++++
T Consensus         3 ~g~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~~~~   73 (288)
T d1zgka1           3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVP-RSGLAGCVVGGLLYAVGGRNNSP-------DGNTDSSALD   73 (288)
T ss_dssp             CCCCEEEECCBSS-SBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCEEEET-------TEEEECCCEE
T ss_pred             cCCEEEEECCcCC-CCCceEEEEECCCCeEEECCCCCCc-cceeEEEEECCEEEEEeCcccCC-------CCccccchhh
Confidence            3678999999864 4678999999999999999999986 99999999999999999975321       1123567999


Q ss_pred             EEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccc
Q 035526          269 VFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG  348 (557)
Q Consensus       269 ~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~  348 (557)
                      +|||.+++|+++++|+.+|..+++++.+  +                ++|++||..    +...++..+.||+.++.|..
T Consensus        74 ~yd~~~~~w~~~~~~p~~r~~~~~~~~~--~----------------~i~~~gg~~----~~~~~~~~~~~~~~~~~~~~  131 (288)
T d1zgka1          74 CYNPMTNQWSPCAPMSVPRNRIGVGVID--G----------------HIYAVGGSH----GCIHHNSVERYEPERDEWHL  131 (288)
T ss_dssp             EEETTTTEEEECCCCSSCCBTCEEEEET--T----------------EEEEECCEE----TTEECCCEEEEETTTTEEEE
T ss_pred             hcccccccccccccccceecceeccccc--e----------------eeEEeccee----cccccceeeeeccccCcccc
Confidence            9999999999999999999999888775  3                899999975    55678888999999999988


Q ss_pred             --cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEE
Q 035526          349 --SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIF  426 (557)
Q Consensus       349 --~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~l  426 (557)
                        ..+.+|..++++...+           ++|++||..... .+.+++.||+.+++|......+..+..++ +++.+++|
T Consensus       132 ~~~~~~~r~~~~~~~~~~-----------~~~~~GG~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i  198 (288)
T d1zgka1         132 VAPMLTRRIGVGVAVLNR-----------LLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIRSGAG-VCVLHNCI  198 (288)
T ss_dssp             CCCCSSCCBSCEEEEETT-----------EEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEETTEE
T ss_pred             ccccccccccceeeeeee-----------cceEecCccccc-ccceEEEeecccccccccccccccccccc-ccceeeeE
Confidence              6777899999998886           999999987654 67889999999999999998888877655 57789999


Q ss_pred             EEEecC------CeEEEEECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCC
Q 035526          427 YVYSET------EKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRN  500 (557)
Q Consensus       427 Yv~GG~------~~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~  500 (557)
                      |++||.      +....||+.+++|+.++++|.|+                                   .++++++.++
T Consensus       199 ~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r-----------------------------------~~~~~~~~~~  243 (288)
T d1zgka1         199 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR-----------------------------------SALGITVHQG  243 (288)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC-----------------------------------BSCEEEEETT
T ss_pred             EEecCccccccccceeeeeecceeeecccCccCcc-----------------------------------cceEEEEECC
Confidence            999986      37899999999999988765544                                   3446667899


Q ss_pred             EEEEEceeeEeceEeeeEEEEecCCCC-CCceecccCCcCcccC
Q 035526          501 HIFGVEMFKIFGQVLDFLTVCDVSEKW-MNWSHISRNHMDYELD  543 (557)
Q Consensus       501 ~iyvvgG~~~~g~~~~~v~vy~~~d~~-~~W~~i~~~~~~~~~~  543 (557)
                      +|||+||.+ ....++.+++|   |++ ++|+.+++||..+...
T Consensus       244 ~l~v~GG~~-~~~~~~~v~~y---d~~~~~W~~~~~~p~~R~~~  283 (288)
T d1zgka1         244 RIYVLGGYD-GHTFLDSVECY---DPDTDTWSEVTRMTSGRSGV  283 (288)
T ss_dssp             EEEEECCBC-SSCBCCEEEEE---ETTTTEEEEEEECSSCCBSC
T ss_pred             EEEEEecCC-CCeecceEEEE---ECCCCEEEECCCCCCCcEeE
Confidence            999999987 66778899999   999 9999999999998763

PyMOL of d1zgka1

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}	Back information, alignment and structure

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}	Back information, alignment and structure

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}	Back information, alignment and structure