Citrus Sinensis ID: 035532

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MAKLARALILSLLLLSITASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcccccEEccEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEcHHEEHccEEEEEEEEEEccccccEEEEEEEc
Coil and Loop (DISEMBL)
MAKLARALILSLLLLSITASvngydrlvggrsevkdvkknkevqeLGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIeattgengeiqMFDSIV
Flexible Loop (DISEMBL)
MAKLARALILSLLLLSITASVNGYDRLvggrsevkdvkknkevqelgkfsveefnrsqqrqgkvirnvAFGRLRFSQVLEAQKQVVSGIKYYLTieattgengeiqmFDSIV
Low Complexity Region (SEG)
MAKlaralilsllllsiTASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV
Disordered region (IsUnstruct)
****ARALILSLLLLSITASVNGYDRLVGG*******************************GKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG************
Disordered Region (DISOPRED)
*****RALILSLLLLSITASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQR*****RNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV
Disordered Region (DISEMBL)
MAKLARALILSLLLLSITASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV
Disordered Region (DISPRO)
*AKLARALILSLLLLSITASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQ*******AFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKLARALILSLLLLSITASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q8L5T9	147	Cysteine proteinase inhib	yes	no	0.892	0.680	0.409	2e-15
Q10993	101	Cysteine proteinase inhib	N/A	no	0.714	0.792	0.465	7e-15
P0C579	151	Cysteine proteinase inhib	yes	no	0.758	0.562	0.436	4e-13
A2XS65	151	Cysteine proteinase inhib	N/A	no	0.758	0.562	0.436	4e-13
Q5N806	158	Cysteine proteinase inhib	no	no	0.678	0.481	0.453	3e-12
Q0JGM8	148	Cysteine proteinase inhib	no	no	0.642	0.486	0.512	4e-10
Q10Q47	117	Putative cysteine protein	no	no	0.526	0.504	0.385	4e-05
Q8H0X6	234	Cysteine proteinase inhib	no	no	0.803	0.384	0.308	6e-05
Q10J94	123	Cysteine proteinase inhib	no	no	0.571	0.520	0.368	0.0001
P31726	135	Cystatin-1 OS=Zea mays GN	N/A	no	0.544	0.451	0.384	0.0001

>sp|Q8L5T9|CYT2_ARATH Cysteine proteinase inhibitor 2 OS=Arabidopsis thaliana GN=CYS2 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 10/110 (9%)

Query: 12  LLLLSITASVNGYDR---LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNV 68
           L++  +T S     R   ++GG+S V +++ N+E+Q+LG++ VE+FN+  Q +   I ++
Sbjct: 17  LVIAVVTPSAANPFRKSVVLGGKSGVPNIRTNREIQQLGRYCVEQFNQQAQNEQGNIGSI 76

Query: 69  A------FGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV 112
           A         L+FS+V+ AQKQVV+G+KYYL IE T   NG  +MFDS+V
Sbjct: 77  AKTDTAISNPLQFSRVVSAQKQVVAGLKYYLRIEVTQ-PNGSTRMFDSVV 125

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10993|CYTB_HELAN Cysteine proteinase inhibitor B OS=Helianthus annuus PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 62/86 (72%), Gaps = 6/86 (6%)

Query: 27  LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
           + GGR++VK+VK + E+Q+LG +SV+E+NR Q+      +    G L+FSQV+ A+ QVV
Sbjct: 1   IPGGRTKVKNVKTDTEIQQLGSYSVDEYNRLQR-----TKKTGAGDLKFSQVIAAETQVV 55

Query: 87  SGIKYYLTIEATTGENGEIQMFDSIV 112
           +G KYYL IEA T + G++++FD+ V
Sbjct: 56  AGTKYYLKIEAIT-KGGKMKVFDAEV 80

Strong inhibitor of papain, ficin and cathepsin H, B and L.

Helianthus annuus (taxid: 4232)

>sp|P0C579|CYT10_ORYSJ Cysteine proteinase inhibitor 10 OS=Oryza sativa subsp. japonica GN=Os04g0350100 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 9/94 (9%)

Query: 27  LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQR--QGKVIRNVAFGRLRFSQVLEAQKQ 84
           LVGGR+E++DV  NK VQ LG+F+V E NR  +    G     V   +L F++V+EAQKQ
Sbjct: 38  LVGGRTEIRDVGSNKAVQSLGRFAVAEHNRRLRHGGSGGPADPVPV-KLAFARVVEAQKQ 96

Query: 85  VVSGIKYYLTIEATTGEN------GEIQMFDSIV 112
           VVSG+ YYL + A+  +       G  ++FD++V
Sbjct: 97  VVSGVAYYLKVAASARDPRGGAAAGGDRVFDAVV 130

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XS65|CYT10_ORYSI Cysteine proteinase inhibitor 10 OS=Oryza sativa subsp. indica GN=OsI_014908 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 9/94 (9%)

Query: 27  LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQR--QGKVIRNVAFGRLRFSQVLEAQKQ 84
           LVGGR+E++DV  NK VQ LG+F+V E NR  +    G     V   +L F++V+EAQKQ
Sbjct: 38  LVGGRTEIRDVGSNKAVQSLGRFAVAEHNRRLRHGGSGGPADPVPV-KLAFARVVEAQKQ 96

Query: 85  VVSGIKYYLTIEATTGEN------GEIQMFDSIV 112
           VVSG+ YYL + A+  +       G  ++FD++V
Sbjct: 97  VVSGVAYYLKVAASARDPRGGAAAGGDRVFDAVV 130

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5N806|CYT4_ORYSJ Cysteine proteinase inhibitor 4 OS=Oryza sativa subsp. japonica GN=Os01g0915200 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 10/86 (11%)

Query: 32  SEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKY 91
           +EV+DV+ ++EVQELG+FSVEE NR ++      R+    RL F +V+ AQ+QVVSG+KY
Sbjct: 54  TEVRDVEGDREVQELGRFSVEEHNRRRRS-----RDCGDVRLEFGRVVAAQRQVVSGLKY 108

Query: 92  YLTIEATTG-----ENGEIQMFDSIV 112
           YL + A          GE ++FD++V
Sbjct: 109 YLRVAAAEEGAAGQNGGEPRVFDAVV 134

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0JGM8|CYT5_ORYSJ Cysteine proteinase inhibitor 5 OS=Oryza sativa subsp. japonica GN=Os01g0915401 PE=3 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 10/82 (12%)

Query: 32  SEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGR-LRFSQVLEAQKQVVSGIK 90
           ++V+DV+ N+EVQELG F V E NR   R G   R    GR L FS+V+ AQ QVVSGIK
Sbjct: 53  TDVEDVEGNREVQELGLFCVVEHNR---RGGSATR----GRGLVFSRVVAAQTQVVSGIK 105

Query: 91  YYLTIEATTGENGEIQMFDSIV 112
           YYL I A   ++ E+ +FD++V
Sbjct: 106 YYLRIAAQEADD-EL-VFDAVV 125

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10Q47|CYT7_ORYSJ Putative cysteine proteinase inhibitor 7 OS=Oryza sativa subsp. japonica GN=Os03g0210100 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 11/70 (15%)

Query: 30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGI 89
          G  E  D+  +  VQELG+++V E +R           VA G L F +V + +KQVV+G+
Sbjct: 28 GSWEPVDIN-DPHVQELGRWAVAEEDR----------GVAAGGLTFERVTDGEKQVVAGV 76

Query: 90 KYYLTIEATT 99
           Y LT+EA++
Sbjct: 77 NYRLTLEASS 86

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H0X6|CYT6_ARATH Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 17/107 (15%)

Query: 10  LSLLLLSITASVNGYDR----LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVI 65
           LSL + S+ AS  G+      LVGG  +V   + + EV+ L +F+V+E N+ +       
Sbjct: 15  LSLFISSLIASDLGFCNEEMALVGGVGDVPANQNSGEVESLARFAVDEHNKKEN------ 68

Query: 66  RNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV 112
                  L F++V++A++QVV+G  ++LT+E    E G+ +++++ V
Sbjct: 69  -----ALLEFARVVKAKEQVVAGTLHHLTLEIL--EAGQKKLYEAKV 108

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10J94|CYT8_ORYSJ Cysteine proteinase inhibitor 8 OS=Oryza sativa subsp. japonica GN=Os03g0429000 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 12/76 (15%)

Query: 23 GYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQ 82
          G+  LVGG S + DV  +  +QELG ++VE  + S    G          LRF +V   +
Sbjct: 27 GHGPLVGGWSPITDVG-DPHIQELGGWAVER-HASLSSDG----------LRFRRVTSGE 74

Query: 83 KQVVSGIKYYLTIEAT 98
          +QVVSG+ Y L + A+
Sbjct: 75 QQVVSGMNYRLVVSAS 90

Specific inhibitor of cysteine proteinases. Probably involved in the regulation of endogenous processes and in defense against pests and pathogens.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P31726|CYT1_MAIZE Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 17/78 (21%)

Query: 27  LVGGRSEVKDVKKNK---EVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQK 83
           L GG   +KDV  N+   ++QEL +F+V E N+            A   L F ++++A+ 
Sbjct: 40  LAGG---IKDVPANENDLQLQELARFAVNEHNQK-----------ANALLGFEKLVKAKT 85

Query: 84  QVVSGIKYYLTIEATTGE 101
           QVV+G  YYLTIE   GE
Sbjct: 86  QVVAGTMYYLTIEVKDGE 103

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
224128888	138	predicted protein [Populus trichocarpa]	0.919	0.746	0.552	1e-21
225433500	140	PREDICTED: cysteine proteinase inhibitor	0.982	0.785	0.516	9e-21
147811593	199	hypothetical protein VITISV_001398 [Viti	0.982	0.552	0.516	1e-20
27728729	123	cystatin [Malus x domestica]	0.919	0.837	0.486	3e-18
255550652	138	Cysteine proteinase inhibitor B, putativ	0.973	0.789	0.5	5e-18
356512413	130	PREDICTED: cysteine proteinase inhibitor	0.955	0.823	0.474	1e-17
356569410	142	PREDICTED: cysteine proteinase inhibitor	0.910	0.718	0.486	3e-17
351629605	139	cysteine proteinase inhibitor CPI-1 [Cof	0.857	0.690	0.475	1e-16
356540112	126	PREDICTED: cysteine proteinase inhibitor	0.723	0.642	0.540	3e-16
255633570	122	unknown [Glycine max]	0.723	0.663	0.528	1e-15

>gi|224128888|ref|XP_002320446.1| predicted protein [Populus trichocarpa] gi|222861219|gb|EEE98761.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 85/123 (69%), Gaps = 20/123 (16%)

Query: 1   MAKLARA--------LILSLLLLSITASVNGY-DRLVGGRSEVKDVKKNKEVQELGKFSV 51
           MAKL ++        L+LS LL+S    V+GY   +VGGRSEV DVK NK+VQELG+FSV
Sbjct: 1   MAKLMKSSVPFLVCFLVLSTLLVS---GVSGYRGGMVGGRSEVSDVKTNKQVQELGRFSV 57

Query: 52  EEFN--RSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFD 109
           +EFN  RS   +G        G+L FS+V+EA KQVVSG+KYYL I ATT +NGE +MFD
Sbjct: 58  KEFNSHRSLYWKGG-----GVGKLMFSEVVEAHKQVVSGLKYYLNIVATT-QNGEKRMFD 111

Query: 110 SIV 112
           S+V
Sbjct: 112 SVV 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433500|ref|XP_002265736.1| PREDICTED: cysteine proteinase inhibitor 2-like [Vitis vinifera]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 82/122 (67%), Gaps = 12/122 (9%)

Query: 1   MAKL-ARALILSLLLLSITAS-----VNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEF 54
           MA+L ++  IL+ LL  +  S       G  R+VGGR+E+KDVK NKEVQ+LG+FSVEE+
Sbjct: 1   MARLTSQPFILTSLLFIVVVSYFWTPAAGIGRMVGGRTEIKDVKTNKEVQQLGRFSVEEY 60

Query: 55  NRSQQRQGK-VIRNVA---FGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDS 110
           NRS  R+ +  I NV    +  L FS+V+EAQKQVVSG KYYL I AT  +NG    FD+
Sbjct: 61  NRSHGRRWREAIGNVLGMDYEYLTFSEVVEAQKQVVSGFKYYLKIAAT--QNGVRNTFDA 118

Query: 111 IV 112
           +V
Sbjct: 119 VV 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811593|emb|CAN70300.1| hypothetical protein VITISV_001398 [Vitis vinifera]

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 82/122 (67%), Gaps = 12/122 (9%)

Query: 1   MAKL-ARALILSLLLLSITAS-----VNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEF 54
           MA+L ++  IL+ LL  +  S       G  R+VGGR+E+KDVK NKEVQ+LG+FSVEE+
Sbjct: 1   MARLTSQPFILTSLLFIVIVSYFCTPAAGIGRMVGGRTEIKDVKTNKEVQQLGRFSVEEY 60

Query: 55  NRSQQRQGK-VIRNVA---FGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDS 110
           NRS  R+ +  I NV    +  L FS+V+EAQKQVVSG KYYL I AT  +NG    FD+
Sbjct: 61  NRSHGRRWREAIGNVLGMDYEYLTFSEVVEAQKQVVSGFKYYLKIAAT--QNGVRNTFDA 118

Query: 111 IV 112
           +V
Sbjct: 119 VV 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27728729|gb|AAO18638.1| cystatin [Malus x domestica]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 73/109 (66%), Gaps = 6/109 (5%)

Query: 4   LARALILSLLLLSITASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGK 63
           + +  I +LL+  +  + NGY  +VGGR E+++VK NKEVQELG+FSVEE+NR +  Q  
Sbjct: 1   MMKVPIFALLICLLFVASNGYGGMVGGRKEIENVKTNKEVQELGRFSVEEYNRQRGTQ-- 58

Query: 64  VIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV 112
             +    G L+F +V+EAQ QVVSGIKYYL + A    NG  ++FDS V
Sbjct: 59  --KMDGGGELQFLEVVEAQSQVVSGIKYYLKVSAV--RNGVHRLFDSEV 103

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550652|ref|XP_002516375.1| Cysteine proteinase inhibitor B, putative [Ricinus communis] gi|223544473|gb|EEF45992.1| Cysteine proteinase inhibitor B, putative [Ricinus communis]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 5/114 (4%)

Query: 1   MAKLARALILSLLLLSITASVNGY-DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQ 59
           MAK+   ++LS + L ++  V+GY   +VGGR++V+DVK N+ VQELG+F V+EFN+ Q 
Sbjct: 1   MAKIL--MLLSAIFLLVSPLVSGYRGMMVGGRTQVRDVKSNEAVQELGRFCVKEFNKQQL 58

Query: 60  RQGKVIRNVAFGR-LRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV 112
           RQ     N   G  L FS+V+ A+ QVVSGIKYYL I A+ G+ GE ++FDS+V
Sbjct: 59  RQQHGGSNGGGGELLMFSEVVAAETQVVSGIKYYLKIAASNGK-GEAKVFDSVV 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512413|ref|XP_003524913.1| PREDICTED: cysteine proteinase inhibitor 10-like isoform 1 [Glycine max] gi|356512415|ref|XP_003524914.1| PREDICTED: cysteine proteinase inhibitor 10-like isoform 2 [Glycine max]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 78/116 (67%), Gaps = 9/116 (7%)

Query: 1   MAKLARALILSLLLLSITASVN---GYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRS 57
           MA L R+  + L +L+I+A +     Y  LVGGRS++ DVK NK+VQ+LG+FSVEE NR 
Sbjct: 1   MAALIRSPAVILAILTISACIACTASYGGLVGGRSKIPDVKANKKVQDLGRFSVEEHNRM 60

Query: 58  QQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT-GENGEIQMFDSIV 112
            ++  K    V      F +V+EAQ+QVVSGIKYY+ I AT  G+ G+ ++F+S+V
Sbjct: 61  LRQAQKEEEQVT-----FVEVVEAQQQVVSGIKYYMKISATQGGDGGDSRIFESVV 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569410|ref|XP_003552894.1| PREDICTED: cysteine proteinase inhibitor 2-like [Glycine max]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/113 (48%), Positives = 81/113 (71%), Gaps = 11/113 (9%)

Query: 4   LARALILSLLLLSITASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGK 63
           +A AL + + LLS+ +S +   R+VGG++E+ +V+KN++VQELG+F+VEE+N       K
Sbjct: 1   MAVALTILVTLLSVLSSASC-ARMVGGKTEIPEVRKNRQVQELGRFAVEEYNLGL----K 55

Query: 64  VIR--NVAFGR--LRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV 112
           +++  NV  GR  L FS V+EAQ+QVVSG+KYYL I AT   NG  +MF+S+V
Sbjct: 56  LLKNNNVDNGREQLNFSAVVEAQQQVVSGMKYYLKISAT--HNGVHEMFNSVV 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351629605|gb|AEQ54766.1| cysteine proteinase inhibitor CPI-1 [Coffea canephora]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 70/101 (69%), Gaps = 5/101 (4%)

Query: 12  LLLLSITASVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFG 71
           L L S T  VN   R VG R +++DVK NKEVQELG++ V E+N+S +++     N +  
Sbjct: 21  LALFSTTLQVNALGRKVGAREKIEDVKSNKEVQELGEYCVSEYNKSLRKKN----NESGA 76

Query: 72  RLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFDSIV 112
            + F+ V+EA+KQVV+GIKYYL I+ATT  +G  +++D+IV
Sbjct: 77  PIIFTSVVEAEKQVVAGIKYYLKIKATTS-SGVPKVYDAIV 116

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540112|ref|XP_003538534.1| PREDICTED: cysteine proteinase inhibitor 2 [Glycine max]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 6/87 (6%)

Query: 26  RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV 85
           R+VGG++EV DV+ N+EVQELG+F+VEE+NR      K  +N    +L FS+V+EAQ+QV
Sbjct: 22  RMVGGKTEVPDVRTNREVQELGRFAVEEYNRGL----KQWKNNGSEQLNFSEVVEAQQQV 77

Query: 86  VSGIKYYLTIEATTGENGEIQMFDSIV 112
           VSG+KYYL I AT    G  +MF S+V
Sbjct: 78  VSGMKYYLKISAT--HKGVHKMFTSVV 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633570|gb|ACU17144.1| unknown [Glycine max]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 6/87 (6%)

Query: 26  RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV 85
           R+VGG++EV DV+ N+EVQELG+F+VEE+NR      K  +N    +L FS+V+EAQ+QV
Sbjct: 22  RMVGGKTEVPDVRTNREVQELGRFAVEEYNRGL----KQWKNNGSEQLNFSEVVEAQQQV 77

Query: 86  VSGIKYYLTIEATTGENGEIQMFDSIV 112
           VSG+ YYL I AT    G  +MF S+V
Sbjct: 78  VSGMMYYLKISAT--HKGVHKMFTSVV 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2045537	147	CYS2 "PHYTOCYSTATIN 2" [Arabid	0.758	0.578	0.445	9.8e-16
TAIR|locus:2058515	125	CYSA "cystatin A" [Arabidopsis	0.571	0.512	0.293	5.5e-06
UNIPROTKB|P01035	148	CST3 "Cystatin-C" [Bos taurus	0.526	0.398	0.430	6.3e-05
TAIR|locus:2130709	117	AT4G16500 [Arabidopsis thalian	0.642	0.615	0.317	6.3e-05
TAIR|locus:2177063	101	CYS1 "cystatin-1" [Arabidopsis	0.607	0.673	0.278	0.00013
TAIR|locus:2092492	234	CYSB "cystatin B" [Arabidopsis	0.651	0.311	0.302	0.00015
TAIR|locus:2168973	122	AT5G47550 [Arabidopsis thalian	0.553	0.508	0.337	0.00021
ZFIN|ZDB-GENE-030131-373	134	cst3 "cystatin C (amyloid angi	0.607	0.507	0.341	0.00027
TAIR|locus:2175294	232	AT5G05110 [Arabidopsis thalian	0.642	0.310	0.348	0.00054
UNIPROTKB|E2RJE4	149	CST6 "Uncharacterized protein"	0.544	0.409	0.319	0.00073

TAIR|locus:2045537 CYS2 "PHYTOCYSTATIN 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/92 (44%), Positives = 65/92 (70%)

Query:    27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQ----GKVIR-NVAFGR-LRFSQVLE 80
             ++GG+S V +++ N+E+Q+LG++ VE+FN+  Q +    G + + + A    L+FS+V+ 
Sbjct:    35 VLGGKSGVPNIRTNREIQQLGRYCVEQFNQQAQNEQGNIGSIAKTDTAISNPLQFSRVVS 94

Query:    81 AQKQVVSGIKYYLTIEATTGENGEIQMFDSIV 112
             AQKQVV+G+KYYL IE T   NG  +MFDS+V
Sbjct:    95 AQKQVVAGLKYYLRIEVTQ-PNGSTRMFDSVV 125

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2058515 CYSA "cystatin A" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 22/75 (29%), Positives = 48/75 (64%)

Query:    27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
             ++GG  +++  + + E++ L +F+++E N+   +Q K+        L F ++++A++QVV
Sbjct:    34 MLGGVHDLRGNQNSGEIESLARFAIQEHNK---QQNKI--------LEFKKIVKAREQVV 82

Query:    87 SGIKYYLTIEATTGE 101
             +G  Y+LT+EA  G+
Sbjct:    83 AGTMYHLTLEAKEGD 97

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

UNIPROTKB|P01035 CST3 "Cystatin-C" [Bos taurus (taxid:9913)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 31/72 (43%), Positives = 43/72 (59%)

Query:    26 RLVGGRSEVKDVKKNKE-VQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQ 84
             RL+GG  E  DV  N+E VQE   F+V EFN+          N A+ + R  +V+ A+KQ
Sbjct:    37 RLLGGLMEA-DV--NEEGVQEALSFAVSEFNKRS--------NDAY-QSRVVRVVRARKQ 84

Query:    85 VVSGIKYYLTIE 96
             VVSG+ Y+L +E
Sbjct:    85 VVSGMNYFLDVE 96

GO:0005576 "extracellular region" evidence=IEA

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

TAIR|locus:2130709 AT4G16500 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 27/85 (31%), Positives = 47/85 (55%)

Query:    28 VGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS 87
             +G R  +K+V  + +V  + K+++EE N+  +            +L F +V+E   QVVS
Sbjct:    29 LGSRKPIKNVS-DPDVVAVAKYAIEEHNKESKE-----------KLVFVKVVEGTTQVVS 76

Query:    88 GIKYYLTIEATTGENGEIQMFDSIV 112
             G KY L I A  G  G+I+ ++++V
Sbjct:    77 GTKYDLKIAAKDG-GGKIKNYEAVV 100

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2177063 CYS1 "cystatin-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 22/79 (27%), Positives = 45/79 (56%)

Query:    27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
             +VGG  ++     + +V+ L +F+V+E N+++        N+    L + ++L A+ QVV
Sbjct:     9 IVGGVRDIDANANDLQVESLARFAVDEHNKNE--------NLT---LEYKRLLGAKTQVV 57

Query:    87 SGIKYYLTIEATTGENGEI 105
             +G  ++LT+E   GE  ++
Sbjct:    58 AGTMHHLTVEVADGETNKV 76

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2092492 CYSB "cystatin B" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 26/86 (30%), Positives = 51/86 (59%)

Query:    27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
             LVGG  +V   + + EV+ L +F+V+E N+ +              L F++V++A++QVV
Sbjct:    36 LVGGVGDVPANQNSGEVESLARFAVDEHNKKEN-----------ALLEFARVVKAKEQVV 84

Query:    87 SGIKYYLTIEATTGENGEIQMFDSIV 112
             +G  ++LT+E    E G+ +++++ V
Sbjct:    85 AGTLHHLTLEIL--EAGQKKLYEAKV 108

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2168973 AT5G47550 [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 25/74 (33%), Positives = 40/74 (54%)

Query:    28 VGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS 87
             VGG S + +V  + +V E+G+F+V E+N+  +  G          L+F  V+  + QVVS
Sbjct:    28 VGGWSPISNVT-DPQVVEIGEFAVSEYNKRSE-SG----------LKFETVVSGETQVVS 75

Query:    88 GIKYYLTIEATTGE 101
             G  Y L + A  G+
Sbjct:    76 GTNYRLKVAANDGD 89

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IDA

ZFIN|ZDB-GENE-030131-373 cst3 "cystatin C (amyloid angiopathy and cerebral hemorrhage)" [Danio rerio (taxid:7955)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:    27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
             LVGG +   D   +K+ Q   +F++ ++NR  Q     +R V       S+V + QKQVV
Sbjct:    21 LVGGPT---DADMDKDSQSALQFAMAQYNR--QSNDAYVRGV-------SKVTKLQKQVV 68

Query:    87 SGIKYYLTIEA--TTGENGEIQ 106
             +GIKY  T++   TT   G ++
Sbjct:    69 AGIKYIFTVDVARTTCRKGGVE 90

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0010466 "negative regulation of peptidase activity" evidence=IEA

GO:0030414 "peptidase inhibitor activity" evidence=IEA

TAIR|locus:2175294 AT5G05110 [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 30/86 (34%), Positives = 49/86 (56%)

Query:    28 VGGRSEVK-DVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
             +GG S+ K D    KE+ ++  F+V+E NR   R+  V        L  ++VL+A +QVV
Sbjct:    45 LGGFSDSKNDWNGGKEIDDIALFAVQEHNR---RENAV--------LELARVLKATEQVV 93

Query:    87 SGIKYYLTIEATTGENGEIQMFDSIV 112
             +G  Y LT+E    E GE +++++ V
Sbjct:    94 AGKLYRLTLEVI--EAGEKKIYEAKV 117

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

UNIPROTKB|E2RJE4 CST6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query:    25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQ 84
             + LVGGR ++     + +VQ+  + +V  +N           N  +   R + +L+AQ Q
Sbjct:    32 NHLVGGRVDLSP--SDPQVQKAAQAAVASYNMGS--------NSLY-YFRDTNILKAQSQ 80

Query:    85 VVSGIKYYLTIE 96
             +V+G+KYYLT+E
Sbjct:    81 LVAGVKYYLTVE 92


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112        98   0.00091  102 3  10 23  0.40    30
                                                     29  0.45    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  479 (51 KB)
  Total size of DFA:  111 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.48u 0.11s 15.59t   Elapsed:  00:00:00
  Total cpu time:  15.48u 0.11s 15.59t   Elapsed:  00:00:00
  Start:  Thu May  9 20:07:34 2013   End:  Thu May  9 20:07:34 2013

GO:0008544 "epidermis development" evidence=IEA

GO:0001533 "cornified envelope" evidence=IEA

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
cd00042	105	cd00042, CY, Cystatin-like domain; Cystatins are a	1e-10
smart00043	107	smart00043, CY, Cystatin-like domain	6e-09
pfam00031	92	pfam00031, Cystatin, Cystatin domain	4e-08

>gnl|CDD|238002 cd00042, CY, Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins

 Score = 53.6 bits (129), Expect = 1e-10
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 10/62 (16%)

Query: 40  NKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT 99
           + EVQEL  F+V E+N  ++   K         L F +VL A+ QVV+G  YY+T+EA  
Sbjct: 10  DPEVQELADFAVAEYN--KKSNDK--------YLEFFKVLSAKSQVVAGTNYYITVEAGD 59

Query: 100 GE 101
             
Sbjct: 60  TN 61

However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 105

>gnl|CDD|214484 smart00043, CY, Cystatin-like domain

 Score = 49.3 bits (118), Expect = 6e-09
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV 85
            +GG S+V     + EVQE   F+V E+N+          N  +  LR  +V+ A+ QV
Sbjct: 1  LCLGGPSDVPP--NDPEVQEAADFAVAEYNKKS--------NDKY-ELRVIKVVSAKSQV 49

Query: 86 VSGIKYYLTIEA 97
          V+G  YYL +E 
Sbjct: 50 VAGTNYYLKVEV 61

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains. Length = 107

>gnl|CDD|215667 pfam00031, Cystatin, Cystatin domain

 Score = 46.9 bits (112), Expect = 4e-08
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)

Query: 29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG 88
          GG S   D   + EVQE   F++ ++N   +                 +VL A+ QVV+G
Sbjct: 1  GGLSPAND--NDPEVQEALDFALAKYN--AKSNNYY--------FELVEVLRAKSQVVAG 48

Query: 89 IKYYLTIEAT 98
          + YY+ +E  
Sbjct: 49 MNYYIKVEVG 58

Very diverse family. Attempts to define separate sub-families failed. Typically, either the N-terminal or C-terminal end is very divergent. But splitting into two domains would make very short families. pfam00666 are related to this family but have not been included. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PF00031	94	Cystatin: Cystatin domain; InterPro: IPR000010 Pep	99.75
cd00042	105	CY Substituted updates: Jan 30, 2002	99.71
smart00043	107	CY Cystatin-like domain. Cystatins are a family of	99.69
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	99.34
TIGR01638	92	Atha_cystat_rel Arabidopsis thaliana cystatin-rela	98.53
PF07430	202	PP1: Phloem filament protein PP1; InterPro: IPR009	98.49
PF06907	220	Latexin: Latexin; InterPro: IPR009684 This family	90.91

>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.75  E-value=1.1e-17  Score=109.97  Aligned_cols=61  Identities=34%  Similarity=0.602  Sum_probs=58.4

Q ss_pred             CceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC
Q 035532           29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG  100 (112)
Q Consensus        29 GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~  100 (112)
                      |||++++  ++||+++++++||+.+||+++         ++.+.+++.+|++|++|||+|++|+|+++++++
T Consensus         1 Gg~~~~~--~~dp~v~~~~~~al~~~N~~~---------~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t   61 (94)
T PF00031_consen    1 GGPSPVD--PNDPEVQEAAEFALDKFNEQS---------NSGYKFKLVKVISATTQVVAGINYYIEFEVGET   61 (94)
T ss_dssp             SSEEEEC--TTSHHHHHHHHHHHHHHHHHS---------TTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHHhC---------cccCcceeeeeeEEEEeecCCceEEEEEEEEcc
Confidence            8999998  799999999999999999998         679999999999999999999999999999994

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....

>cd00042 CY Substituted updates: Jan 30, 2002

Probab=99.71  E-value=9.1e-17  Score=107.64  Aligned_cols=59  Identities=44%  Similarity=0.707  Sum_probs=55.9

Q ss_pred             CceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532           29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT   99 (112)
Q Consensus        29 GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~   99 (112)
                      |||.+++  .+||+++++++||+++||+.+         ++.+ +++.+|++|++|||+|++|+|++++.+
T Consensus         1 gg~~~~~--~~d~~~~~~~~~a~~~~N~~~---------~~~~-~~~~~i~~~~~QvvaG~~y~i~~~~~~   59 (105)
T cd00042           1 GGPSDIP--ANDPEVQELADFAVAEYNKKS---------NDKY-LEFFKVLSAKSQVVAGTNYYITVEAGD   59 (105)
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHhhc---------Cccc-eeEEEEEEEEEEEEeeeEEEEEEEEec
Confidence            8999997  799999999999999999998         5677 999999999999999999999999998

>smart00043 CY Cystatin-like domain

Probab=99.69  E-value=5.6e-17  Score=109.11  Aligned_cols=63  Identities=38%  Similarity=0.595  Sum_probs=58.5

Q ss_pred             ccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC
Q 035532           27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG  100 (112)
Q Consensus        27 ~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~  100 (112)
                      ++|||++++  .+||+++++++||+.+||+++         ++.+.+++.+|++|++|||+|++|+|++++.+.
T Consensus         2 ~~Gg~~~~~--~~d~~~~~~~~~a~~~~N~~~---------~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t   64 (107)
T smart00043        2 CLGGPSDVP--PNDPEVQEAADFAVAEYNKKS---------NDKYELRVIKVVSAKSQVVAGTNYYLKVEVGET   64 (107)
T ss_pred             CCCCCccCC--CCCHHHHHHHHHHHHHHHHhc---------ccchhhhhhhhheeeeeeecceEEEEEEEEEec
Confidence            689999997  689999999999999999998         557888899999999999999999999999984

Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=99.34  E-value=3.2e-12  Score=95.50  Aligned_cols=74  Identities=34%  Similarity=0.471  Sum_probs=65.1

Q ss_pred             ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeee--ceEEEEEEEEecCCC
Q 035532           25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS--GIKYYLTIEATTGEN  102 (112)
Q Consensus        25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVa--G~nY~l~v~v~~~~~  102 (112)
                      .+....|.+++|+ ++|.+|+++.|||.|||+ .           +..++|.+|.+++.|=++  |++|+|.+.+.+ ..
T Consensus       111 ~p~~~~Wi~I~ni-n~p~VQeLgkFAV~EhNK-~-----------gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkD-g~  176 (202)
T PF07430_consen  111 TPQSKKWIPIPNI-NNPFVQELGKFAVIEHNK-A-----------GDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKD-GL  176 (202)
T ss_pred             CcccCCCEECCCC-CcHHHHHHHHHHHHHHhh-c-----------CCceEEEEEeeEEEEeccCCCceEEEEEEeec-CC
Confidence            4556889999886 999999999999999994 3           358999999999999775  699999999999 45


Q ss_pred             CeeeeEEEEC
Q 035532          103 GEIQMFDSIV  112 (112)
Q Consensus       103 g~~~~y~a~V  112 (112)
                      |+...|+|+|
T Consensus       177 G~~~~YeAvV  186 (202)
T PF07430_consen  177 GRLGNYEAVV  186 (202)
T ss_pred             CCcCceEEEE
Confidence            9999999986

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein

Probab=98.53  E-value=3.1e-07  Score=61.68  Aligned_cols=54  Identities=22%  Similarity=0.355  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCC
Q 035532           39 KNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENG  103 (112)
Q Consensus        39 ~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g  103 (112)
                      +.+-+..++++|+++||...           ...+++++|++|..|..+|.+|+||+++.+..+|
T Consensus        11 ~rd~~~~la~~al~k~N~~~-----------~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~   64 (92)
T TIGR01638        11 NRDLLERLSYVASKKYNDTK-----------FLNLELVEVVRANYRGGAKSKSYITFEARDKPDG   64 (92)
T ss_pred             HHHHHHHHHHHHHHHhhhhc-----------CceEEEEEEEEEEeeccceEEEEEEEEEecCCCC
Confidence            45668999999999999987           5899999999999999999999999999986555

This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.

>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1

Probab=98.49  E-value=3.2e-07  Score=68.80  Aligned_cols=75  Identities=27%  Similarity=0.379  Sum_probs=67.5

Q ss_pred             ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEe--EeeeeceEEEEEEEEecCCC
Q 035532           25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQ--KQVVSGIKYYLTIEATTGEN  102 (112)
Q Consensus        25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~--~QVVaG~nY~l~v~v~~~~~  102 (112)
                      ....+||.+++|+ .+|.+|+++.|++++++.+.           ...+++..|.+.+  .|.+.+++|+|.+++.+ --
T Consensus         4 ~~~~~~w~~ip~v-~~~~~q~v~~~~veq~k~~~-----------~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d-~l   70 (202)
T PF07430_consen    4 VPFSPKWIKIPDV-KEPCLQEVAKFAVEQFKIQY-----------GDSLKFRSVVEGWYFELCPNSLKYRLHVKAID-FL   70 (202)
T ss_pred             cccCcccccCCcc-cchHHHHHHHHHHHHHhhhc-----------ccceeeeeeeeceeecccccceeEEEeehhhh-hh
Confidence            3457999999997 89999999999999999987           5689999999998  88999999999999998 67


Q ss_pred             CeeeeEEEEC
Q 035532          103 GEIQMFDSIV  112 (112)
Q Consensus       103 g~~~~y~a~V  112 (112)
                      |..-+|||++
T Consensus        71 ~r~l~~e~ii   80 (202)
T PF07430_consen   71 GRSLKYEAII   80 (202)
T ss_pred             ccccceeeee
Confidence            8888999875

This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].

>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []

Probab=90.91  E-value=5.3  Score=30.78  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeee--ceEEEEEEEEecCCCC-eeeeEEEEC
Q 035532           38 KKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS--GIKYYLTIEATTGENG-EIQMFDSIV  112 (112)
Q Consensus        38 ~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVa--G~nY~l~v~v~~~~~g-~~~~y~a~V  112 (112)
                      ++.-..+++|+-|..-+|-..+.        -...+.+.+|.+|+..++.  |-+|+|++.+.+-..| +..++.|.|
T Consensus         4 p~h~~a~rAA~va~hy~N~~~GS--------P~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V   73 (220)
T PF06907_consen    4 PSHRPAQRAARVAQHYINYRAGS--------PSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEV   73 (220)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHH-B--------TTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHhccccCC--------CceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEE
Confidence            45666889999999999988732        1355678889999999885  7899999999984222 445665544

Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
3ima_B	91	Complex Strcuture Of Tarocystatin And Papain Length		3e-07
2w9p_A	87	Crystal Structure Of Potato Multicystatin Length =		6e-05

>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain Length = 91

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 11/74 (14%)
Query: 27  LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
           L+GG  +V+  + + EV+EL +F+V+E N+ +              L+FS++++A++QVV
Sbjct: 2   LMGGIVDVEGAQNSAEVEELARFAVDEHNKKEN-----------ALLQFSRLVKAKQQVV 50
Query: 87  SGIKYYLTIEATTG 100
           SGI ++LT+E   G
Sbjct: 51  SGIMHHLTVEVIEG 64

>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 40 NKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEAT 98
          N + QEL +F+++++N+ Q              L F + L  ++QVV+GI YY+T+ AT
Sbjct: 10 NTKFQELARFAIQDYNKKQN-----------AHLEFVENLNVKEQVVAGIMYYITLAAT 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	2e-15
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	2e-14
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	8e-14
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	1e-13
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	1e-12
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	8e-11
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	1e-09
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	5e-09
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	9e-09
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	3e-08

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} Length = 91

 Score = 65.0 bits (158), Expect = 2e-15
 Identities = 28/86 (32%), Positives = 55/86 (63%), Gaps = 13/86 (15%)

Query: 27  LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
           L+GG  +V+  + + EV+EL +F+V+E N+ +              L+FS++++A++QVV
Sbjct: 2   LMGGIVDVEGAQNSAEVEELARFAVDEHNKKEN-----------ALLQFSRLVKAKQQVV 50

Query: 87  SGIKYYLTIEATTGENGEIQMFDSIV 112
           SGI ++LT+E    E G+ +++++ V
Sbjct: 51  SGIMHHLTVEVI--EGGKKKVYEAKV 74

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2 Length = 102

 Score = 62.6 bits (152), Expect = 2e-14
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 14/87 (16%)

Query: 26  RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV 85
            ++GG   V +   +  + +L +F+V E N+                L F +++  ++QV
Sbjct: 7   PVLGGVEPVGNEN-DLHLVDLARFAVTEHNKKAN-----------SLLEFEKLVSVKQQV 54

Query: 86  VSGIKYYLTIEATTGENGEIQMFDSIV 112
           V+G  YY TIE    E    +++++ V
Sbjct: 55  VAGTLYYFTIE--VKEGDAKKLYEAKV 79

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus} Length = 135

 Score = 62.1 bits (150), Expect = 8e-14
 Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 14/87 (16%)

Query: 27  LVGGRSEVKDVKKN-KEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV 85
           ++GG  +     +N  + ++L +F+V E+N                 L F +V++A++QV
Sbjct: 42  IMGGIYDAPLNNENGFDKEDLARFAVREYNNKNN-----------ALLEFVRVVKAKEQV 90

Query: 86  VSGIKYYLTIEATTGENGEIQMFDSIV 112
           VSG+ +YLT+E    + G+ +++++ V
Sbjct: 91  VSGMMHYLTVEV--NDAGKKKLYEAKV 115

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A Length = 87

 Score = 60.3 bits (146), Expect = 1e-13
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 13/83 (15%)

Query: 30  GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGI 89
           G   V +   N + QEL +F+++++N+ Q              L F + L  ++QVV+GI
Sbjct: 1   GIVNVPNPN-NTKFQELARFAIQDYNKKQN-----------AHLEFVENLNVKEQVVAGI 48

Query: 90  KYYLTIEATTGENGEIQMFDSIV 112
            YY+T+ A T + G+ +++ + +
Sbjct: 49  MYYITLAA-TDDAGKKKIYKAKI 70

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A Length = 115

 Score = 58.1 bits (140), Expect = 1e-12
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 27  LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
           L GG  E  +   + E  E+  ++   ++  QQ        V        +V++ + Q V
Sbjct: 5   LRGGYRERSNQD-DPEYLEMAHYATSTWSA-QQPGKTHFDTVV-------EVMKVETQTV 55

Query: 87  SGIKYYLTIEATTGE 101
           +G  Y LT++     
Sbjct: 56  AGTNYRLTLKVAEST 70

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata} Length = 115

 Score = 53.6 bits (128), Expect = 8e-11
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 13/72 (18%)

Query: 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
          + GG +            EL  F+       ++                  V E + QVV
Sbjct: 3  IPGGWTRQD--PTEARFLELAHFATSSQTEGREFY-----------DTVVTVKEVETQVV 49

Query: 87 SGIKYYLTIEAT 98
          +G+ Y LTIE +
Sbjct: 50 AGMNYKLTIEIS 61

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A Length = 111

 Score = 50.9 bits (121), Expect = 1e-09
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 11/72 (15%)

Query: 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV 85
          RL+G    V   + ++ +Q   +F++ E+NR+         N  +   R  +V+ A++Q+
Sbjct: 1  RLLGAPVPVD--ENDEGLQRALQFAMAEYNRAS--------NDKY-SSRVVRVISAKRQL 49

Query: 86 VSGIKYYLTIEA 97
          VSGIKY L +E 
Sbjct: 50 VSGIKYILQVEI 61

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 1r4c_A Length = 120

 Score = 49.4 bits (117), Expect = 5e-09
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQ 84
           RLVGG  +     + + V+    F+V E+N++         N  +   R  QV+ A+KQ
Sbjct: 7  PRLVGGPMDAS--VEEEGVRRALDFAVGEYNKAS--------NDMY-HSRACQVVRARKQ 55

Query: 85 VVSGIKYYLTIEA 97
          +V+G+ Y+L +E 
Sbjct: 56 IVAGVNYFLDVEL 68

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A Length = 122

 Score = 48.7 bits (115), Expect = 9e-09
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV 85
           L GG         +K VQ    F++ E+N+   +     R +        QV+ A +Q+
Sbjct: 9  TLAGGIHATD--LNDKSVQRALDFAISEYNKVINKDEYYSRPL--------QVMAAYQQI 58

Query: 86 VSGIKYYLTIEA 97
          V G+ YY  ++ 
Sbjct: 59 VGGVNYYFNVKF 70

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens} Length = 131

 Score = 47.5 bits (112), Expect = 3e-08
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV 85
             G    +K    +  V +  ++SVE+FN                  + S++  A  Q+
Sbjct: 15 VKPGFPKTIK--TNDPGVLQAARYSVEKFNNCTNDMFL---------FKESRITRALVQI 63

Query: 86 VSGIKYYLTIEA 97
          V G+KY L +E 
Sbjct: 64 VKGLKYMLEVEI 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3ima_B	91	Cysteine proteinase inhibitor; cystatin, tarocysta	99.89
1eqk_A	102	Oryzacystatin-I; alpha and beta proteins, cystatin	99.87
3ul5_A	139	Canecystatin-1; defense, hydrolase inhibitor; 2.30	99.86
2w9q_A	87	Multicystatin; protease inhibitor, thiol protease	99.85
3mwz_A	115	Sialostatin L2; antiparallel beta-sheet, hydrolase	99.85
2l4v_A	135	Cystatin; protease inhibitor, hydrolase inhibitor;	99.83
1yvb_I	111	Cystatin; cysteine protease-inhibitor complex, hyd	99.83
2oct_A	98	Cystatin B; stefin, amyloid, domain-swapping, hand	99.83
1roa_A	122	Cystatin D; inhibitor of cysteine pepidases, prote	99.82
3gax_A	120	Cystatin-C; cysteine protease inhibitor, 3D domain	99.81
1cyu_A	98	Cystatin A, stefin A; proteinase inhibitor (cystei	99.81
2ch9_A	131	Cystatin F; inhibitor, cysteine protease inhibitor	99.8
2kxg_A	95	Aspartic protease inhibitor; sqapi, protein, hydro	99.79
3l0r_A	115	Cystatin-2, OMC2; SOFT TICK, protease inhibitor, t	99.79
2o9u_X	97	Monellin chain B and monellin chain A; alternative	99.76
2bo9_B	222	Human latexin, MUM; metallocarboxypeptidase, X-RAY	92.03
1kwi_A	101	Protegrin-3 precursor; cathelicidin motif, disulfi	87.88

>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0

Probab=99.89  E-value=7.3e-23  Score=135.08  Aligned_cols=73  Identities=37%  Similarity=0.646  Sum_probs=62.4

Q ss_pred             ccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCeee
Q 035532           27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQ  106 (112)
Q Consensus        27 ~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~~  106 (112)
                      ++|||+++++.++||+++++++||+++||+++           +..+.+.+|+++++|||||+||+|++++++  +|+.+
T Consensus         2 ~~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~-----------n~~~~~~~Vv~a~~QVVaG~nY~l~v~~~~--~~~~~   68 (91)
T 3ima_B            2 LMGGIVDVEGAQNSAEVEELARFAVDEHNKKE-----------NALLQFSRLVKAKQQVVSGIMHHLTVEVIE--GGKKK   68 (91)
T ss_dssp             CBTCEEC------CHHHHHHHHHHHHHHHHHH-----------TCCCEEEEEEEEEEEESSSEEEEEEEEEEE--TTEEE
T ss_pred             CCcccccCcCCCCCHHHHHHHHHHHHHHHHhc-----------CCceEEEEEEEEEEEEeccEEEEEEEEEec--CCceE
Confidence            68999999411699999999999999999998           345788999999999999999999999999  78999


Q ss_pred             eEEEEC
Q 035532          107 MFDSIV  112 (112)
Q Consensus       107 ~y~a~V  112 (112)
                      .|+++|
T Consensus        69 ~y~a~V   74 (91)
T 3ima_B           69 VYEAKV   74 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2

Probab=99.87  E-value=6.2e-22  Score=132.69  Aligned_cols=74  Identities=27%  Similarity=0.552  Sum_probs=66.8

Q ss_pred             ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCe
Q 035532           25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGE  104 (112)
Q Consensus        25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~  104 (112)
                      .+++|||++++| ++||+++++++||+.+||+++           +..+.+.+|+++++|||||+||+|++++++  +++
T Consensus         6 ~~~~GG~~~~~~-~~~~~v~~~a~~Av~~~n~~~-----------n~~~~~~~Vv~a~~QVVaG~~Y~l~v~~~~--~~~   71 (102)
T 1eqk_A            6 GPVLGGVEPVGN-ENDLHLVDLARFAVTEHNKKA-----------NSLLEFEKLVSVKQQVVAGTLYYFTIEVKE--GDA   71 (102)
T ss_dssp             CSCSSSSEEECC-TTCHHHHHHHHHHHHHHHHHT-----------TCCEEEEEEEEEEEEESSSEEEEEEEEEEE--TTC
T ss_pred             CCCCcccccCCC-CCCHHHHHHHHHHHHHHHhhc-----------CCceEEEEEEEEEEEEeccEEEEEEEEEec--CCC
Confidence            568999999865 489999999999999999987           345788999999999999999999999999  788


Q ss_pred             eeeEEEEC
Q 035532          105 IQMFDSIV  112 (112)
Q Consensus       105 ~~~y~a~V  112 (112)
                      .+.|+++|
T Consensus        72 ~~~c~~~V   79 (102)
T 1eqk_A           72 KKLYEAKV   79 (102)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEE
Confidence            99999986

>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*

Probab=99.86  E-value=1e-21  Score=139.30  Aligned_cols=75  Identities=24%  Similarity=0.438  Sum_probs=58.7

Q ss_pred             ccccCceeecC--CCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCC
Q 035532           25 DRLVGGRSEVK--DVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGEN  102 (112)
Q Consensus        25 ~~~~GG~~~~~--~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~  102 (112)
                      ..++|||++++  + ++||+++++++||+.+||+++         |  ..|++.+|++|++|||||+||+|+|++.+ .+
T Consensus        43 ~~~~GG~~~i~~~~-~ndpeVqela~fAV~e~Nkks---------n--~~l~~~kVv~a~sQVVAG~nY~L~V~a~d-~~  109 (139)
T 3ul5_A           43 VGMVGDVRDAPAGH-ENDLEAIELARFAVAEHNSKT---------N--AMLEFERLVKVRHQVVAGTMHHFTVQVKE-AG  109 (139)
T ss_dssp             -------------C-TTCHHHHHHHHHHHHHHHHHH---------C--CCCEEEEEEEEEEEEEEEEEEEEEEEEEC-SS
T ss_pred             CCCCCCcccccCCC-CCCHHHHHHHHHHHHHHHHhC---------C--CceeEEEEEEEEEEEecCEEEEEEEEEec-CC
Confidence            66899999993  3 699999999999999999998         3  35899999999999999999999999998 57


Q ss_pred             CeeeeEEEEC
Q 035532          103 GEIQMFDSIV  112 (112)
Q Consensus       103 g~~~~y~a~V  112 (112)
                      |+.+.|+|+|
T Consensus       110 g~~~~y~a~V  119 (139)
T 3ul5_A          110 GGKKLYEAKV  119 (139)
T ss_dssp             CCEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            8999999986

>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A

Probab=99.85  E-value=6.4e-21  Score=124.21  Aligned_cols=70  Identities=33%  Similarity=0.680  Sum_probs=64.6

Q ss_pred             ceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCeeeeEE
Q 035532           30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFD  109 (112)
Q Consensus        30 G~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~~~y~  109 (112)
                      ||++++| ++||+++++++||+.+||+++         |  ..+++.+|+++++|||||+||+|++++++ ++|+.+.|+
T Consensus         1 G~~~~~~-~~d~~v~~~~~fAv~~~n~~~---------n--~~~~~~~vv~a~~QVVaG~~Y~l~v~~~~-~~~~~~~c~   67 (87)
T 2w9q_A            1 GIVNVPN-PNNTKFQELARFAIQDYNKKQ---------N--AHLEFVENLNVKEQVVAGIMYYITLAATD-DAGKKKIYK   67 (87)
T ss_dssp             CCEECSS-TTSHHHHHHHHHHHHHHHHHH---------T--CCEEEEEEEEEEEEESSSEEEEEEEEEEE-TTTEEEEEE
T ss_pred             CcccCCC-CCCHHHHHHHHHHHHHHHhhc---------C--CceEEEEEEEEEEEEeccEEEEEEEEEec-CCCCeEEEE
Confidence            7899977 499999999999999999998         3  38999999999999999999999999999 678899999


Q ss_pred             EEC
Q 035532          110 SIV  112 (112)
Q Consensus       110 a~V  112 (112)
                      ++|
T Consensus        68 ~~V   70 (87)
T 2w9q_A           68 AKI   70 (87)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A

Probab=99.85  E-value=7.5e-21  Score=129.45  Aligned_cols=78  Identities=19%  Similarity=0.327  Sum_probs=67.9

Q ss_pred             ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccc-cccceeEeEEEEEeEeeeeceEEEEEEEEecC---
Q 035532           25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNV-AFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG---  100 (112)
Q Consensus        25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~-~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~---  100 (112)
                      .+++|||+++++ .+||+++++++||+.+||+++         | +.+++++.+|++|++|||+|+||+|++++++.   
T Consensus         3 ~~~~Gg~~~~~~-~~~~~v~~~~~~av~~~N~~s---------n~~~~~~~~~~V~~a~~QvVaG~~Y~l~v~v~~t~C~   72 (115)
T 3mwz_A            3 LALRGGYRERSN-QDDPEYLEMAHYATSTWSAQQ---------PGKTHFDTVVEVMKVETQTVAGTNYRLTLKVAESTCE   72 (115)
T ss_dssp             CCCSSCCEEECT-TSCTHHHHHHHHHHHHHHHTS---------TTCCEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEE
T ss_pred             cccCCcceECCC-CCCHHHHHHHHHHHHHHHhhc---------CCcccceeeeeeeEEEeeccCCEEEEEEEEEEecccc
Confidence            467999999982 289999999999999999998         4 57888999999999999999999999999641   


Q ss_pred             -------------CCCeeeeEEEEC
Q 035532          101 -------------ENGEIQMFDSIV  112 (112)
Q Consensus       101 -------------~~g~~~~y~a~V  112 (112)
                                   ++++.+.|+++|
T Consensus        73 K~~~~~~~~C~~~~~~~~~~C~~~V   97 (115)
T 3mwz_A           73 LTSTYNKDTCQANANAAQRTCTTVI   97 (115)
T ss_dssp             TTSCCCTTTCCCCTTSCEEEEEEEE
T ss_pred             CCCcCCcccCCCCCCCCeeEEEEEE
Confidence                         357888888875

>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}

Probab=99.83  E-value=1.9e-20  Score=132.05  Aligned_cols=75  Identities=29%  Similarity=0.580  Sum_probs=67.1

Q ss_pred             ccccCceeecC-CCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCC
Q 035532           25 DRLVGGRSEVK-DVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENG  103 (112)
Q Consensus        25 ~~~~GG~~~~~-~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g  103 (112)
                      .+++|||++++ +.++|++++++++||+.+||+++         |  ..+.+++|+++++|||+|+||+|++++++  ++
T Consensus        40 ~~~~GG~~~i~~~~~nd~evqe~a~fAv~e~N~~s---------n--~~~~f~kVv~a~~QVVAG~nY~l~vev~~--~~  106 (135)
T 2l4v_A           40 HPIMGGIYDAPLNNENGFDKEDLARFAVREYNNKN---------N--ALLEFVRVVKAKEQVVSGMMHYLTVEVND--AG  106 (135)
T ss_dssp             CCCCCCSSCCCCTTTTSHHHHHHHHHHHHHHHHHT---------S--CCCEEEEEEEEEEECSSSEEEEEEEEEEE--TT
T ss_pred             CCCCCccCcCCCCCCCCHHHHHHHHHHHHHHHhhc---------C--CceEEEEEEEEEEEEecCEEEEEEEEEec--CC
Confidence            66899999997 22489999999999999999988         3  45677999999999999999999999999  79


Q ss_pred             eeeeEEEEC
Q 035532          104 EIQMFDSIV  112 (112)
Q Consensus       104 ~~~~y~a~V  112 (112)
                      +.+.|+++|
T Consensus       107 ~~~~c~a~V  115 (135)
T 2l4v_A          107 KKKLYEAKV  115 (135)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            999999986

>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A

Probab=99.83  E-value=1.4e-20  Score=126.71  Aligned_cols=64  Identities=33%  Similarity=0.508  Sum_probs=60.3

Q ss_pred             cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC
Q 035532           26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG  100 (112)
Q Consensus        26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~  100 (112)
                      +++|||++++  .+||+++++++||+.+||+++         |+.++|++.+|++|++|||+|++|+|+++++++
T Consensus         1 ~~~Gg~~~~~--~~d~~v~~~~~~av~~~N~~s---------~~~~~~~l~~v~~a~~QvVaG~~y~l~v~v~~t   64 (111)
T 1yvb_I            1 RLLGAPVPVD--ENDEGLQRALQFAMAEYNRAS---------NDKYSSRVVRVISAKRQLVSGIKYILQVEIGRT   64 (111)
T ss_dssp             CCTTCEECCC--TTCHHHHHHHHHHHHHHHHHC---------CCSSCEEEEEECCCEEEESSSEEEEEEEEEEEB
T ss_pred             CCCCCceECC--CCCHHHHHHHHHHHHHHHHhC---------CCcceeEEEEEEEEEEEEECCeEEEEEEEEEcc
Confidence            3689999997  799999999999999999998         678999999999999999999999999999994

>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*

Probab=99.83  E-value=8.9e-21  Score=127.04  Aligned_cols=73  Identities=15%  Similarity=0.311  Sum_probs=64.9

Q ss_pred             cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCee
Q 035532           26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEI  105 (112)
Q Consensus        26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~  105 (112)
                      +|+|||++++  ++||+++++++||++++|+.+           +..+++.+++++++|||||+||+|++++++++..|.
T Consensus         1 mm~GG~~~~~--~~~~evq~i~~~a~~~~n~~~-----------~~~~~~~~vv~~~tQVVAG~NY~ikv~v~~~~~~h~   67 (98)
T 2oct_A            1 MMSGAPSATQ--PATAETQHIADQVRSQLEEKY-----------NKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL   67 (98)
T ss_dssp             -CCSSCCCCE--ECCHHHHHHHHHHHHHHHHHH-----------TSCCSCCEEEEEEEEEEEEEEEEEEEECSTTCEEEE
T ss_pred             CCcccCcCCC--CCCHHHHHHHHHHHHHHHhhc-----------CCccceeEEEEEEEEEeCCEEEEEEEEECCCcEEEE
Confidence            4789999998  689999999999999999987           345788999999999999999999999999666889


Q ss_pred             eeEEEE
Q 035532          106 QMFDSI  111 (112)
Q Consensus       106 ~~y~a~  111 (112)
                      +.|+..
T Consensus        68 ~vy~~l   73 (98)
T 2oct_A           68 RVFQSL   73 (98)
T ss_dssp             EEEEES
T ss_pred             EEEecC
Confidence            999863

>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A

Probab=99.82  E-value=4.8e-20  Score=126.43  Aligned_cols=65  Identities=29%  Similarity=0.444  Sum_probs=58.0

Q ss_pred             cc-ccCceeecCCCCCCHHHHHHHHHHHHHHHhh-hhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC
Q 035532           25 DR-LVGGRSEVKDVKKNKEVQELGKFSVEEFNRS-QQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG  100 (112)
Q Consensus        25 ~~-~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~-~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~  100 (112)
                      .+ ++|||++++  .+||+++++++||+.+||++ +         |+.+.|++.+|++|++|||+|+||+|+++++++
T Consensus         7 ~~~~~Gg~~~~~--~~d~~v~~~a~~Av~~~N~~~s---------~~~~~~~l~~v~~a~~QVVaG~~Y~l~v~v~~t   73 (122)
T 1roa_A            7 SRTLAGGIHATD--LNDKSVQRALDFAISEYNKVIN---------KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRT   73 (122)
T ss_dssp             -----CCEEEEC--TTSHHHHHHHHHHHHHHHHTTC---------CCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             cCcCCCCCeECC--CCCHHHHHHHHHHHHHHHhccc---------CCCceeEEEEEEEEEEEEECCeEEEEEEEEEcc
Confidence            45 899999997  69999999999999999998 8         678899999999999999999999999999994

>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A

Probab=99.81  E-value=5.5e-20  Score=126.10  Aligned_cols=65  Identities=32%  Similarity=0.536  Sum_probs=56.9

Q ss_pred             CccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532           24 YDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT   99 (112)
Q Consensus        24 ~~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~   99 (112)
                      ..+++|||++++  ++||+++++++||+.+||+++         |+.++|++.+|+++++|||+|++|+|++++++
T Consensus         6 ~~~~~Gg~~~~~--~~d~~v~~~a~~av~~~N~~s---------n~~~~~~~~~v~~a~~QvVaG~~Y~l~v~v~~   70 (120)
T 3gax_A            6 PPRLVGGPMDAS--VEEEGVRRALDFAVGEYNKAS---------NDMYHSRACQVVRARKQIVAGVNYFLDVELCR   70 (120)
T ss_dssp             ------CCEEEC--TTSHHHHHHHHHHHHHHHHHC---------CCSEEEEEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred             cCccCCCCEeCC--CCCHHHHHHHHHHHHHHHhcc---------CCcceeeEEEEEEEEEEEecCeEEEEEEEEEe
Confidence            367899999997  799999999999999999998         67889999999999999999999999999998

>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A

Probab=99.81  E-value=6.1e-21  Score=127.02  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=64.4

Q ss_pred             cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCee
Q 035532           26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEI  105 (112)
Q Consensus        26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~  105 (112)
                      +++|||++++  ++||+++++++||++++|+++         |  ..|++.+|++|++|||||+||+|++++++++.-|.
T Consensus         1 ~~~GG~~~~~--~~d~ev~~~a~~av~~~n~~~---------n--~~~~~~~vv~a~~QVVaG~nY~l~v~~~~~~c~~~   67 (98)
T 1cyu_A            1 MIPGGLSEAK--PATPEIQEIVDKVKPQLEEKT---------N--ETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYLHL   67 (98)
T ss_dssp             CCCSSCSSEE--ESCTTHHHHHHHTCTTTTTSS---------C--CSSSCEEEEEEEEECSSSCEEEEEEEECSSCBCEE
T ss_pred             CCCcccccCC--CCCHHHHHHHHHHHHHHHhhc---------C--CCcceEEEEEEEEEEecceEEEEEEEEcCCcEEEE
Confidence            4789999997  699999999999999999987         3  34599999999999999999999999999767788


Q ss_pred             eeEEE
Q 035532          106 QMFDS  110 (112)
Q Consensus       106 ~~y~a  110 (112)
                      +.|+.
T Consensus        68 ~V~~~   72 (98)
T 1cyu_A           68 KVFKS   72 (98)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            88864

>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}

Probab=99.80  E-value=5.4e-19  Score=123.28  Aligned_cols=64  Identities=27%  Similarity=0.366  Sum_probs=60.5

Q ss_pred             ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532           25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT   99 (112)
Q Consensus        25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~   99 (112)
                      .+++|||++++  .+||+++++++||+++||+++         |+.+.|++.+|++|++|||+|+||+|++++++
T Consensus        14 ~~~~Gg~~~~~--~~d~ev~e~a~~Av~~~N~~s---------n~~~~~~l~~V~~a~~QVVaG~~Y~l~v~v~~   77 (131)
T 2ch9_A           14 RVKPGFPKTIK--TNDPGVLQAARYSVEKFNNCT---------NDMFLFKESRITRALVQIVKGLKYMLEVEIGR   77 (131)
T ss_dssp             SSCCCCCEECC--TTCHHHHHHHHHHHHHHHHHS---------CCSEEEEEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred             ccCCCCCeeCC--CCCHHHHHHHHHHHHHHHHhC---------CCCcceEEEEEEEeeeEecCCeEEEEEEEEEc
Confidence            56899999997  699999999999999999998         67888999999999999999999999999997

>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}

Probab=99.79  E-value=2e-19  Score=120.18  Aligned_cols=70  Identities=19%  Similarity=0.380  Sum_probs=62.8

Q ss_pred             ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeece-----EEEEEEEEec
Q 035532           25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGI-----KYYLTIEATT   99 (112)
Q Consensus        25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~-----nY~l~v~v~~   99 (112)
                      .+++|||++++  .+||+++++++|||++||++              .+++.+|++|  |||+|+     ||+|++++.+
T Consensus         3 ~~~~Gg~~~i~--~nd~~v~e~a~fAv~e~N~~--------------~l~~~~Vv~a--QVVaG~~~~~~~Y~L~l~~~~   64 (95)
T 2kxg_A            3 GPAIGEVIGIS--VNDPRVKEIAEFALKQHAEQ--------------NLILAGVDAG--QIIKGIPHWDNYYNLILSAKH   64 (95)
T ss_dssp             CCSSCCCCCCC--TTCHHHHHHHHHHHHHCCTT--------------CCEEEEEEEE--EEECSSCSSCCEEEEEEEEES
T ss_pred             CCCCCcceECC--CCCHHHHHHHHHHHHHHHhh--------------CcEEEEEEEE--eEecCccccCccEEEEEEEec
Confidence            46899999995  69999999999999999974              4899999999  999999     9999999999


Q ss_pred             CCCCeeeeEEEEC
Q 035532          100 GENGEIQMFDSIV  112 (112)
Q Consensus       100 ~~~g~~~~y~a~V  112 (112)
                      +..|+.+.|+|+|
T Consensus        65 ~~~~~~~~y~a~V   77 (95)
T 2kxg_A           65 SPHEFSKFYNVVV   77 (95)
T ss_dssp             CTTSCCEEEEEEE
T ss_pred             CCCCCceEEEEEE
Confidence            3338899999986

>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}

Probab=99.79  E-value=1.9e-19  Score=123.26  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=64.4

Q ss_pred             cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC-----
Q 035532           26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG-----  100 (112)
Q Consensus        26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~-----  100 (112)
                      .++|||++++  ++||+++++++||+.  |+++         ++.+++++.+|++|++|||+|+||+|++++++.     
T Consensus         2 ~~~GG~~~i~--~~d~~v~~~a~~Av~--N~~s---------~~~~~~~~~kV~~a~~QVVaG~~Y~i~v~v~~t~C~K~   68 (115)
T 3l0r_A            2 SIPGGWTRQD--PTEARFLELAHFATS--SQTE---------GREFYDTVVTVKEVETQVVAGMNYKLTIEISPSVCKIG   68 (115)
T ss_dssp             -CCCSCEEEC--TTCHHHHHHHHHHHT--TCCT---------TCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEEBT
T ss_pred             CCcccceeCC--CCCHHHHHHHHHHHh--cccc---------CCCcceEEEEEEEEEEEEEeeEEEEEEEEEeccccccc
Confidence            4789999998  699999999999999  8777         678899999999999999999999999999863     


Q ss_pred             ------------CCCeeeeEEEEC
Q 035532          101 ------------ENGEIQMFDSIV  112 (112)
Q Consensus       101 ------------~~g~~~~y~a~V  112 (112)
                                  ++++.+.|+++|
T Consensus        69 ~~~~~~~~C~~~~~~~~~~C~~~V   92 (115)
T 3l0r_A           69 EVQYSAEQCVPKDAQQKSTCVAVI   92 (115)
T ss_dssp             TBCCCTTTCCBSCTTSCEEEEEEE
T ss_pred             ccccccccCcccCCCceeEEEEEE
Confidence                        246777787765

>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*

Probab=99.76  E-value=8.2e-19  Score=117.65  Aligned_cols=65  Identities=32%  Similarity=0.587  Sum_probs=56.7

Q ss_pred             cCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEE-----------eEeeeeceEEEEEEE
Q 035532           28 VGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEA-----------QKQVVSGIKYYLTIE   96 (112)
Q Consensus        28 ~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a-----------~~QVVaG~nY~l~v~   96 (112)
                      +|||+++ | . ||+++++|+|||++||+.++          ...+++.+|+++           ++| |+|+||+|+|+
T Consensus         1 ~Ggw~~i-d-v-~~~iqela~FAV~e~nk~~~----------~~~L~f~~Vv~~~~~~~~~~~~~~~Q-VaG~nY~Ltle   66 (97)
T 2o9u_X            1 MGEWEII-D-I-GPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVIRPCMKKTIYENEGFRE-IKGYEYQLYVY   66 (97)
T ss_dssp             -CCCEEE-C-C-SHHHHHHHHHHHHHHHHHCT----------TCSCCEEEEEEEEEEEEEECSSSSCS-EEEEEEEEEEE
T ss_pred             CCCceEC-C-C-CHHHHHHHHHHHHHHhcccc----------CCCcEEEEEEEcccccccccchhhee-eccEEEEEEEE
Confidence            4999999 5 4 99999999999999998752          467999999999           999 99999999999


Q ss_pred             EecCCCCeeeeEEEEC
Q 035532           97 ATTGENGEIQMFDSIV  112 (112)
Q Consensus        97 v~~~~~g~~~~y~a~V  112 (112)
                      +.+  +    +|+|+|
T Consensus        67 a~d--~----~yeA~V   76 (97)
T 2o9u_X           67 ASD--K----LFRADI   76 (97)
T ss_dssp             ETT--E----EC-CEE
T ss_pred             EeC--C----ceEEEE
Confidence            988  2    899876

>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A

Probab=92.03  E-value=2.2  Score=31.85  Aligned_cols=67  Identities=15%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeee--ceEEEEEEEEecC-CCCeeeeEEEEC
Q 035532           38 KKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS--GIKYYLTIEATTG-ENGEIQMFDSIV  112 (112)
Q Consensus        38 ~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVa--G~nY~l~v~v~~~-~~g~~~~y~a~V  112 (112)
                      ++.-..+++|+-|..-+|-..+.        -...+.+.+|.+|+.+++.  |-+|++++.+.+- ..++..++.|.|
T Consensus         5 psh~~a~rAA~vA~hy~N~~~gS--------P~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~~~~~~~~~CsA~V   74 (222)
T 2bo9_B            5 PTNYPASRAALVAQNYINYQQGT--------PHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEV   74 (222)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHCB--------TTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHhhcccCC--------CceeeehhhhhhhhhhhccCCCcEEEEEEEeeeeecCCceeEEEEEE
Confidence            45566889999999999988731        1345668888999999985  6799999999982 124566666654

>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A

Probab=87.88  E-value=1.2  Score=29.42  Aligned_cols=50  Identities=12%  Similarity=0.072  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeee-eceEEEEEEEEec
Q 035532           41 KEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV-SGIKYYLTIEATT   99 (112)
Q Consensus        41 ~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVV-aG~nY~l~v~v~~   99 (112)
                      -.++|+..-||..||+++         .+.+.|++.+..-...++. -|+++.+.+.+.+
T Consensus         3 lsY~EAv~~Av~~~N~~S---------~~~nlFRLl~~~p~p~~~~d~~~~~~v~FtIkE   53 (101)
T 1kwi_A            3 LSYREAVLRAVDRLNEQS---------SEANLYRLLELDQPPKADEDPGTPKPVSFTVKE   53 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHC---------CSSEEEEEEEEC---------CCCEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHHhcCC---------CccceeeeecccCCCccCCCCCCcceeEEEEee
Confidence            357899999999999998         3467777777655433333 4567878777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1eqka_	102	d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza	2e-13
d1roaa_	111	d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [Ta	4e-12
d1cewi_	108	d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [T	7e-09
d1r4ca_	110	d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [Ta	3e-08

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

 Score = 59.1 bits (143), Expect = 2e-13
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 14/86 (16%)

Query: 27  LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
           ++GG   V +   +  + +L +F+V E N+                L F +++  ++QVV
Sbjct: 8   VLGGVEPVGNEN-DLHLVDLARFAVTEHNKKAN-----------SLLEFEKLVSVKQQVV 55

Query: 87  SGIKYYLTIEATTGENGEIQMFDSIV 112
           +G  YY TIE    E    +++++ V
Sbjct: 56  AGTLYYFTIEVK--EGDAKKLYEAKV 79

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 4e-12
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 29  GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG 88
           GG         +K VQ    F++ E+N+   +             R  QV+ A +Q+V G
Sbjct: 1   GGIHATD--LNDKSVQRALDFAISEYNKVINKDEYY--------SRPLQVMAAYQQIVGG 50

Query: 89  IKYYLTIEATTGE 101
           + YY  ++     
Sbjct: 51  VNYYFNVKFGRTT 63

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.3 bits (112), Expect = 7e-09
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG 88
          G    V   + ++ +Q   +F++ E+NR+   +            R  +V+ A++Q+VSG
Sbjct: 1  GAPVPVD--ENDEGLQRALQFAMAEYNRASNDKYS---------SRVVRVISAKRQLVSG 49

Query: 89 IKYYLTIEA 97
          IKY L +E 
Sbjct: 50 IKYILQVEI 58

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 3e-08
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 29  GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG 88
           GG  +     + + V+    F+V E+N++                R  QV+ A+KQ+V+G
Sbjct: 1   GGPMDAS--VEEEGVRRALDFAVGEYNKASNDMYH---------SRALQVVRARKQIVAG 49

Query: 89  IKYYLTIEATTGE 101
           + Y+L +E     
Sbjct: 50  VNYFLDVELGRTT 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1eqka_	102	Phytocystatin {Japanese rice (Oryza sativa), subsp	99.88
d1roaa_	111	Cystatin D {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1cewi_	108	Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}	99.77
d1r4ca_	110	Cystatin C {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1stfi_	98	Cystatin B (stefin B) {Human (Homo sapiens) [TaxId	99.66
d1nb5i_	98	Cystatin A (stefin A) {Human (Homo sapiens) [TaxId	99.62
d1kwia_	98	Cathelicidin motif of protegrin-3 {Pig (Sus scrofa	99.02
d2bo9b1	98	Latexin {Human (Homo sapiens) [TaxId: 9606]}	94.84
d2o9ux1	96	Monellin, B & A chains together {Serendipity berry	89.18

>d1eqka_ d.17.1.2 (A:) Phytocystatin {Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Phytocystatin
species: Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530]

Probab=99.88  E-value=2e-22  Score=134.12  Aligned_cols=75  Identities=27%  Similarity=0.527  Sum_probs=68.0

Q ss_pred             CccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCC
Q 035532           24 YDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENG  103 (112)
Q Consensus        24 ~~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g  103 (112)
                      ..+++|||++++| ++||+++++++||+.+||+.+           +..+++.+|++|++|||+|+||+|++++.+  ++
T Consensus         5 ~~~l~GG~~~i~d-~nd~~v~e~a~~Av~~~N~~~-----------~~~~~~vkV~~a~~QVVaG~~Y~i~v~~~~--~~   70 (102)
T d1eqka_           5 GGPVLGGVEPVGN-ENDLHLVDLARFAVTEHNKKA-----------NSLLEFEKLVSVKQQVVAGTLYYFTIEVKE--GD   70 (102)
T ss_dssp             SCSCSSSSEEECC-TTCHHHHHHHHHHHHHHHHHT-----------TCCEEEEEEEEEEEEESSSEEEEEEEEEEE--TT
T ss_pred             CCcccCCcccCCC-CCCHHHHHHHHHHHHHHhhcC-----------CCceEEEEEEEEeeeeccceeEEEEEEEcc--CC
Confidence            3679999999866 599999999999999999987           345788999999999999999999999999  78


Q ss_pred             eeeeEEEEC
Q 035532          104 EIQMFDSIV  112 (112)
Q Consensus       104 ~~~~y~a~V  112 (112)
                      ..+.|+++|
T Consensus        71 ~~k~c~~~V   79 (102)
T d1eqka_          71 AKKLYEAKV   79 (102)
T ss_dssp             CCEEEEEEE
T ss_pred             ccEEEEEEE
Confidence            889999876

>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.8e-19  Score=118.53  Aligned_cols=61  Identities=28%  Similarity=0.417  Sum_probs=56.5

Q ss_pred             CceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532           29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT   99 (112)
Q Consensus        29 GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~   99 (112)
                      |||++++  .+||+++++++||+++||++++        .+.+++++.+|++|++|||+|++|+|++++++
T Consensus         1 GG~~~~~--~~d~~v~~~~~~Av~~~N~~sn--------~~~~~~~l~~V~~a~~QVVaG~~Y~l~~~i~~   61 (111)
T d1roaa_           1 GGIHATD--LNDKSVQRALDFAISEYNKVIN--------KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGR   61 (111)
T ss_dssp             CCEEEEC--TTSHHHHHHHHHHHHHHHHTTC--------CCSEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHHhcC--------CccceeEEEEEEEEEEEEecCcEEEEEEEEEe
Confidence            8999997  7999999999999999999872        24789999999999999999999999999976

>d1cewi_ d.17.1.2 (I:) Cystatin {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.77  E-value=1e-18  Score=116.07  Aligned_cols=60  Identities=32%  Similarity=0.490  Sum_probs=57.5

Q ss_pred             CceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532           29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT   99 (112)
Q Consensus        29 GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~   99 (112)
                      |||.+++  ++||+++++++||+++||+++         ++.+++++.+|++|++|||+|++|+|++++++
T Consensus         1 Gg~~~~~--~~d~~v~~~~~~Av~~~N~~s---------~~~~~~~~~~V~~a~~QVVaG~~Y~l~~~i~~   60 (108)
T d1cewi_           1 GAPVPVD--ENDEGLQRALQFAMAEYNRAS---------NDKYSSRVVRVISAKRQLVSGIKYILQVEIGR   60 (108)
T ss_dssp             CCCEECC--TTCHHHHHHHHHHTHHHHTTS---------CCSEEEEEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHhcC---------CCcceEEEEEEEEEEEEeecCcEEEEEEEEEe
Confidence            8999998  799999999999999999998         77999999999999999999999999999974

>d1r4ca_ d.17.1.2 (A:) Cystatin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-18  Score=114.08  Aligned_cols=60  Identities=30%  Similarity=0.519  Sum_probs=57.6

Q ss_pred             CceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532           29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT   99 (112)
Q Consensus        29 GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~   99 (112)
                      |||.+++  .+||+++++++||+++||+++         |+.+++++.+|++|++|||+|++|+|++++++
T Consensus         1 Gg~~~~~--~~d~~v~~~~~~Av~~~N~~s---------~~~~~~~~~kV~~a~~QvVaG~~Y~l~~~i~~   60 (110)
T d1r4ca_           1 GGPMDAS--VEEEGVRRALDFAVGEYNKAS---------NDMYHSRALQVVRARKQIVAGVNYFLDVELGR   60 (110)
T ss_dssp             CCCEECC--TTSHHHHHHHHHHHHHHHHHC---------CCSEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             CCCccCC--CCCHHHHHHHHHHHHHHHhhC---------CccceeEEEEEEEEEEEeccCCEEEEEEEEee
Confidence            8999998  799999999999999999998         77999999999999999999999999999975

>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin B (stefin B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4e-17  Score=108.00  Aligned_cols=72  Identities=15%  Similarity=0.302  Sum_probs=66.4

Q ss_pred             cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCee
Q 035532           26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEI  105 (112)
Q Consensus        26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~  105 (112)
                      +|+|||++..  +.+||+|++++....+.+.++           +..+..+++++.++|||||+||+|++++++++.-|.
T Consensus         1 mm~GG~s~~~--~at~Eiq~i~d~Vk~~~e~k~-----------~~k~~~f~av~yktQvVaG~NYfIKV~vg~~~~~Hl   67 (98)
T d1stfi_           1 MMSGAPSATQ--PATAETQHIADQVRSQLEEKY-----------NKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL   67 (98)
T ss_dssp             CCBSCCCCCE--ECCHHHHHHHHTTHHHHHHHH-----------TCCCSCCEEEEEEEEESSEEEEEEEEECSSSCEEEE
T ss_pred             CcCCCCCCCC--CCCHHHHHHHHHHHHHHHHHc-----------CCCcceeEEEEEEEEEEcceeEEEEEEeCCCcEEEE
Confidence            4789999998  789999999999999999988           567888899999999999999999999999888899


Q ss_pred             eeEEE
Q 035532          106 QMFDS  110 (112)
Q Consensus       106 ~~y~a  110 (112)
                      |.|+.
T Consensus        68 rV~~~   72 (98)
T d1stfi_          68 RVFQS   72 (98)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            99986

>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cystatins
domain: Cystatin A (stefin A)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.6e-16  Score=103.29  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=66.2

Q ss_pred             cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCee
Q 035532           26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEI  105 (112)
Q Consensus        26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~  105 (112)
                      +|+|||++..  +.++++|++++-...+.+.+.           +..+..++.++.++|||||+||+|++.+++++.-|.
T Consensus         1 mm~GG~s~~~--~at~Eiq~I~d~Vk~~le~k~-----------g~~~~~F~av~yktQvVAGtNYfIKV~vG~~~~vHl   67 (98)
T d1nb5i_           1 MIPGGLSEAK--PATPEIQEIVDKVKPQLEEKT-----------NETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYMHL   67 (98)
T ss_dssp             CCTTSCCCCE--ECCHHHHHHHHHHHHHHHHHH-----------CCCCSCCEEEEEEEEESSEEEEEEEEECSSSCEEEE
T ss_pred             CccCCCCCCC--CCCHHHHHHHHHHHHHHHHhc-----------CCCcceEEEEEEEEEEEcceeEEEEEEeCCCcEEEE
Confidence            5899999998  789999999999999998887           578888999999999999999999999999888899


Q ss_pred             eeEEE
Q 035532          106 QMFDS  110 (112)
Q Consensus       106 ~~y~a  110 (112)
                      |.|+.
T Consensus        68 rVf~~   72 (98)
T d1nb5i_          68 KVFKS   72 (98)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            99986

>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Cathelicidin motif
domain: Cathelicidin motif of protegrin-3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=1.8e-10  Score=74.46  Aligned_cols=50  Identities=12%  Similarity=0.078  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeee-eceEEEEEEEEecC
Q 035532           42 EVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV-SGIKYYLTIEATTG  100 (112)
Q Consensus        42 ~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVV-aG~nY~l~v~v~~~  100 (112)
                      .+++++++|+.+||+++         ++.+.|++.+|.+|+.|+| +|++|+|++.+++.
T Consensus         3 sy~eav~~Al~~~N~~s---------~~~~~f~l~~v~~a~~q~v~~g~~y~l~f~i~eT   53 (98)
T d1kwia_           3 SYREAVLRAVDRLNEQS---------SEANLYRLLELDQPPKADEDPGTPKPVSFTVKET   53 (98)
T ss_dssp             HHHHHHHHHHHHHHHHC---------CSSEEEEEEEEC---------CCCEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCC---------CCcccEEEEEEeecceeeecCCcEEEEEEEEEEe
Confidence            47899999999999998         6789999999999999999 89999999999873

>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Latexin-like
domain: Latexin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.23  Score=31.17  Aligned_cols=54  Identities=17%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeee--ceEEEEEEEEec
Q 035532           38 KKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS--GIKYYLTIEATT   99 (112)
Q Consensus        38 ~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVa--G~nY~l~v~v~~   99 (112)
                      ++.-..+++|+-|..-+|-..+.        -...+-+.+|.+|..+++.  |-+|+|++.+.+
T Consensus         5 psh~pA~rAA~vA~hy~N~~~GS--------P~rl~~L~~V~~a~~e~ip~~G~Ky~L~Fs~e~   60 (98)
T d2bo9b1           5 PTNYPASRAALVAQNYINYQQGT--------PHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEE   60 (98)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHCB--------TTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHhhcccCC--------CceeeehhHHHhhhhhhccccCcEEEEEEEhhh
Confidence            56677889999999999988732        1355678899999999985  689999999988

>d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together {Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Cystatin/monellin
family: Monellin
domain: Monellin, B & A chains together
species: Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]

Probab=89.18  E-value=1.4  Score=26.42  Aligned_cols=58  Identities=33%  Similarity=0.549  Sum_probs=42.4

Q ss_pred             CceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeE--ee--------eeceEEEEEEEEe
Q 035532           29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQK--QV--------VSGIKYYLTIEAT   98 (112)
Q Consensus        29 GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~--QV--------VaG~nY~l~v~v~   98 (112)
                      |.|.-++   --|-.|.+..|||.+-|+-.+          -..+.+.+|++--.  -+        ..|..|.+-+-++
T Consensus         1 geweiid---igpftqnlgkfavdeenkigq----------ygrltfnkvirpcmkktiyenegfreikgyeyqlyvyas   67 (96)
T d2o9ux1           1 GEWEIID---IGPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVIRPCMKKTIYENEGFREIKGYEYQLYVYAS   67 (96)
T ss_dssp             CCCEEEC---CSHHHHHHHHHHHHHHHHHCT----------TCSCCEEEEEEEEEEEEEECSSSSCSEEEEEEEEEEEET
T ss_pred             CCceEEE---ecchhhhhcceeecccccccc----------cceeehhHHhHHHhhhhhhcccCceeccCcEEEEEEEec
Confidence            5687775   589999999999999998753          35678888885421  11        3677888777665


Q ss_pred             c
Q 035532           99 T   99 (112)
Q Consensus        99 ~   99 (112)
                      +
T Consensus        68 d   68 (96)
T d2o9ux1          68 D   68 (96)
T ss_dssp             T
T ss_pred             c
Confidence            5