Citrus Sinensis ID: 035535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEGLKGSSCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccEEEEEcccccccEEEEEcccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHcccccccEEEEEcHHHHHHccccccccEEEEEccEEEEEEccccccccEEEEEEccccccHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccEEcccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccHcccccEEEEEccccccEEEEEEccccccEEEEEccEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccccEEcccHHHHccccccccEEEEcccEEEEEEEEEcccccEEEEEEccccccHHHHHHHHHHcccEEccHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEyqsrtgaldlsdwilnglrgkcpELAEYIGAVqiskseisgrglfatknvEAGTLFLVTKAIATergilsgensneNEQLVMWKNFIDKVMESISKCQRTRHLISILssgdnedevevpdvsafrpeaeerrssnekldmgkilsILDVNSLVEDAISAKVlgknkglygLGLWALASFinhscspnarrvhvGDYIIVHAsrdvkageeITFAYFDMLLPLEKRKEmsktwgfhckckrckfeegmsskqELSEIEIGLERGIDAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEGlkgsscgmpemerpiklgkglyGKLVKKQALKSLLEI
Flexible Loop (DISEMBL)
ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSrtgaldlsdwILNGLRGKCPELAEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATergilsgensneneQLVMWKNFIDKVMESISKCQRTRHLISilssgdnedevevpdvsafrpeaeerrssnekldmgkILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHasrdvkagEEITFAYFDMLLPLEKRKEMSKTWGFHCKCkrckfeegmsskQELSEIEIGLERGIDAGNAVFRLEENMKRWIvrgkekgylrASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEglkgsscgmpEMERpiklgkglygklvKKQALKSLLEI
Low Complexity Region (SEG)
ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETkqeasqlsklkkslclalsNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAkvlgknkglyglglWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPaaeavvdsvveavGCDERMLKVLIEGLKGSSCGMPEMERPIklgkglygklvkkQALKSLLEI
Disordered region (IsUnstruct)
************LLLREEWKESVQVYTQFIDLCQSQI****************LCLAL*********LRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSG*****NEQLVMWKNFIDKVMESISKCQRTRHLISIL*********************************GKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEE*******LSEIEIGLERGIDAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEGLKGSSCGM*****PIKLGKGLYGKLV***********
Disordered Region (DISOPRED)
**MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQI***********KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL**************FLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCK*****************************RLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEGLKGSSCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI
Disordered Region (DISEMBL)
ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQIT***********LKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTRHLISILSS*********PDVSAF************KLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEGLKGSSCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI
Disordered Region (DISPRO)
ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEGLKGSSCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNxxxxxxxxxxxxxxxxxxxxxLKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEGLKGSSCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	518	2.2.26 [Sep-21-2011]
Q9CWR2	428	Histone-lysine N-methyltr	yes	no	0.146	0.177	0.402	4e-12
Q9H7B4	428	Histone-lysine N-methyltr	yes	no	0.146	0.177	0.402	4e-12
Q54D67	343	SET and MYND domain-conta	no	no	0.137	0.206	0.413	2e-10
Q7XJS0	480	Histone-lysine N-methyltr	no	no	0.138	0.15	0.397	1e-08
Q75BF1	488	Potential protein lysine	no	no	0.138	0.147	0.397	2e-08
O74467	319	SET domain-containing pro	yes	no	0.206	0.335	0.344	2e-08
Q54DL6	521	SET and MYND domain-conta	no	no	0.158	0.157	0.352	2e-08
A5DQN2	483	Potential protein lysine	N/A	no	0.187	0.200	0.371	4e-08
Q12529	373	Potential protein lysine	yes	no	0.142	0.198	0.384	4e-08
Q6C9E7	438	Potential protein lysine	yes	no	0.142	0.168	0.402	8e-08

>sp|Q9CWR2|SMYD3_MOUSE Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 309 GLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEM 367
           G+GL+   S +NHSC PN   V  G ++++ A R+++AGEE+T  Y DML+   E+RK++
Sbjct: 194 GVGLYPSMSLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYLDMLMTSEERRKQL 253

Query: 368 SKTWGFHCKCKRCKFEE 384
              + F C C RC+ ++
Sbjct: 254 RDQYCFECDCIRCQTQD 270

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q9H7B4|SMYD3_HUMAN Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 309 GLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEM 367
           G+GL+   S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+   E+RK++
Sbjct: 194 GVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 253

Query: 368 SKTWGFHCKCKRCKFEE 384
              + F C C RC+ ++
Sbjct: 254 RDQYCFECDCFRCQTQD 270

Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. Plays an important role in transcriptional activation as a member of an RNA polymerase complex. Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q54D67|Y2454_DICDI SET and MYND domain-containing protein DDB_G0292454 OS=Dictyostelium discoideum GN=DDB_G0292454 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 4/75 (5%)

Query: 309 GLGLWALASFINHSCSPNARRVHVGDYIIVHAS--RDVKAGEEITFAYFDMLLPL-EKRK 365
           G+GL+ L SFINH C PNA  +H  D   +H S  + +  G+EIT +Y D    L ++R 
Sbjct: 260 GIGLYLLTSFINHDCDPNA-FIHFPDDHTMHLSPLKPINPGDEITISYTDTTKDLVDRRS 318

Query: 366 EMSKTWGFHCKCKRC 380
           ++ + +GF+C+CK+C
Sbjct: 319 QLFENYGFNCECKKC 333

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2

 Score = 62.0 bits (149), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 309 GLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDML-LPLEKRKEM 367
           G+GL+ L S INHSCSPNA  V      +V A  ++    EIT +Y +     L ++K +
Sbjct: 202 GIGLFPLVSIINHSCSPNAVLVFEEQMAVVRAMDNISKDSEITISYIETAGSTLTRQKSL 261

Query: 368 SKTWGFHCKCKRC 380
            + + FHC+C RC
Sbjct: 262 KEQYLFHCQCARC 274

Histone methyltransferase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q75BF1|SET5_ASHGO Potential protein lysine methyltransferase SET5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SET5 PE=3 SV=2

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 312 LWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLE-KRKEMSKT 370
           ++ L S +NHSC PN      G +I V+A +++K+ EE+T +Y + L  ++ +R+E+   
Sbjct: 336 IYMLLSHLNHSCEPNIYYELEGHHINVYARKEIKSDEELTVSYVNPLHDVDLRRRELRVN 395

Query: 371 WGFHCKCKRCKFE 383
           WGF C C RCK E
Sbjct: 396 WGFLCLCDRCKRE 408

Putative protein lysine methyltransferase.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O74467|SET5_SCHPO SET domain-containing protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set5 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 15/122 (12%)

Query: 266 EAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSP 325
           EA  R  +     MG  L     N+L  D        + KG    G++ L S +NH CSP
Sbjct: 62  EAFHRLFNAHPDTMGPFLGPFYSNALTID--------ETKG----GMFLLGSRMNHDCSP 109

Query: 326 NARRVHVG--DYIIVHASRDVKAGEEITFAYFDMLLP-LEKRKEMSKTWGFHCKCKRCKF 382
           N +       D + VHA RD++AGEEI   Y D+     E++K + + +GF C C  C  
Sbjct: 110 NVKHTWNPRLDQVTVHAVRDIEAGEEILTTYIDLHKSHTERQKILLEHFGFKCYCSVCSV 169

Query: 383 EE 384
           EE
Sbjct: 170 EE 171

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q54DL6|Y2140_DICDI SET and MYND domain-containing protein DDB_G0292140 OS=Dictyostelium discoideum GN=DDB_G0292140 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)

Query: 309 GLGLWALASFINHSCSPNARRVHVGDYIIVHAS--RDVKAGEEITFAYFDMLLPLEKRKE 366
           G G++   SF NHSC PN     V + + V  +  ++VK G+E+T +Y D   PL KR+E
Sbjct: 358 GCGVYVRNSFFNHSCDPNVNYWVVNNTLEVECTLLKNVKEGDELTISYIDTTSPLNKRRE 417

Query: 367 -MSKTWGFHCKCKRCKFEEGMSSKQ 390
            + + + F+C C +C  +E +   Q
Sbjct: 418 KLLEGYLFNCLCTKCVADESLPLDQ 442

Probable methyltransferase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A5DQN2|SET5_PICGU Potential protein lysine methyltransferase SET5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SET5 PE=3 SV=2

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 16/113 (14%)

Query: 317 SFINHSCSPN----ARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKR-KEMSKTW 371
           S +NHSC PN    A        + V A+RD+KAGEE+T +Y +    L +R +E+   W
Sbjct: 347 SHLNHSCHPNTDVQASTASRTGPLKVFAARDIKAGEELTTSYVNPSHTLHQRQRELRVNW 406

Query: 372 GFHCKCKRCKFE----------EGMSSKQELSEIEIGLERGIDA-GNAVFRLE 413
           GF C C+RCK E           GM +K+  S I   L+    A GN+   LE
Sbjct: 407 GFICSCQRCKDEAKEHHRRKSSNGMGAKEVPSNIREMLKDTKSAIGNSEIELE 459

Putative protein lysine methyltransferase.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q12529|SET6_YEAST Potential protein lysine methyltransferase SET6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SET6 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 4/78 (5%)

Query: 310 LGLWAL--ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDML-LPLEKRKE 366
            G W    AS+ NHSC+PN  +   G+ ++   +RD+K  E+I   Y  +L LP  KR+ 
Sbjct: 291 FGYWVFPEASYFNHSCNPNITKYRKGNSMLFTMNRDIKKDEQICIDYSGVLDLPTVKRRA 350

Query: 367 -MSKTWGFHCKCKRCKFE 383
            ++ +W F C C+RCK E
Sbjct: 351 FLADSWFFDCACERCKSE 368

Involved in resistance to compounds that target ergosterol biosynthesis, including fenpropimorph, dyclonine, and alverine citrate. Since a deletion in the absence of these compounds does not have an effect on growth, is more likely to be involved in compound availability.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6C9E7|SET5_YARLI Potential protein lysine methyltransferase SET5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SET5 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 311 GLWALASFINHSCSPNARRVHVGDY--IIVHASRDVKAGEEITFAYFDMLLPLEKRK-EM 367
            ++   S +NHSC PN    +VG    I V A RD+K GEE+   Y +    L+ R+  +
Sbjct: 314 NMYLTQSHLNHSCEPNVDVKNVGRTQGISVRAKRDIKTGEELFTTYVNPEHQLDDRRYNL 373

Query: 368 SKTWGFHCKCKRCKFEE 384
              WGF+C C RCK EE
Sbjct: 374 RVNWGFNCNCTRCKREE 390

Putative protein lysine methyltransferase.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
224101385	542	SET domain protein [Populus trichocarpa]	1.0	0.955	0.713	0.0
225444416	550	PREDICTED: uncharacterized protein LOC10	1.0	0.941	0.701	0.0
255562926	538	protein with unknown function [Ricinus c	0.996	0.959	0.691	0.0
302144054	503	unnamed protein product [Vitis vinifera]	0.940	0.968	0.663	0.0
147810952	588	hypothetical protein VITISV_025097 [Viti	0.913	0.804	0.712	0.0
449435328	540	PREDICTED: uncharacterized protein LOC10	0.982	0.942	0.639	0.0
357474929	540	SET domain protein [Medicago truncatula]	0.996	0.955	0.627	0.0
297845524	976	predicted protein [Arabidopsis lyrata su	0.996	0.528	0.633	0.0
186478896	545	SET domain protein 35 [Arabidopsis thali	1.0	0.950	0.628	0.0
9295736	969	T24P13.14 [Arabidopsis thaliana]	1.0	0.534	0.628	0.0

>gi|224101385|ref|XP_002312257.1| SET domain protein [Populus trichocarpa] gi|222852077|gb|EEE89624.1| SET domain protein [Populus trichocarpa]

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/523 (71%), Positives = 450/523 (86%), Gaps = 5/523 (0%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQIT----ETKQEASQLSKLKKSLCL 56
           ELMQ+LR KATELLLREEW+ESVQVYTQFI+LCQ QI+    +   +   L+KL+KSLCL
Sbjct: 15  ELMQELRFKATELLLREEWQESVQVYTQFINLCQDQISVKSHQNHPDPDLLTKLQKSLCL 74

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           ALSNRAEA SRLRD   AL+DC+QALKIES+HFK+L+CKGKILLSLNRYSMALDCFK  +
Sbjct: 75  ALSNRAEALSRLRDLTGALKDCDQALKIESTHFKSLVCKGKILLSLNRYSMALDCFKTAV 134

Query: 117 VDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKS 176
           +D QASG+LET+NG+++K KKLE+QSRTGA DLSDWIL+G RGK PELAEY G VQI +S
Sbjct: 135 LDPQASGNLETLNGYVQKCKKLEFQSRTGAFDLSDWILSGFRGKSPELAEYTGPVQIKRS 194

Query: 177 EISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKC 236
           E+SGRGLFATKN++AGTL LVTKAIATERGILS E+S EN +LVMWKNF+DKV++S +KC
Sbjct: 195 ELSGRGLFATKNIDAGTLLLVTKAIATERGILSSEDSCENARLVMWKNFVDKVVDSATKC 254

Query: 237 QRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAI 296
           +RT HLIS LSSG++ED++E P++S FRPEAEE    NEKLD  KIL++LDVNSLVED++
Sbjct: 255 ERTHHLISTLSSGEDEDKLEAPEMSLFRPEAEEIGELNEKLDKVKILNVLDVNSLVEDSV 314

Query: 297 SAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFD 356
           SAKVLG+N   YG+GLW LASFINHSC+PNARR+HVGD+++VHASRDVKAGEEITFAYFD
Sbjct: 315 SAKVLGRNSDYYGVGLWVLASFINHSCNPNARRLHVGDHVLVHASRDVKAGEEITFAYFD 374

Query: 357 MLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENM 416
           +L PL KR EMSKTWGFHC CKRCKFEE M SKQE+ EIEIGLERGID G+A+FRLEE M
Sbjct: 375 VLSPLSKRNEMSKTWGFHCSCKRCKFEEEMCSKQEMKEIEIGLERGIDVGSAIFRLEEGM 434

Query: 417 KRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLK 476
           +RW+VRG+ KGY+RAS W+AY E YGSE+ + RWG+RIPA + VVDSV EAVGCDER+LK
Sbjct: 435 RRWMVRGRGKGYMRASFWAAYFEAYGSEKSVTRWGRRIPAVDIVVDSVAEAVGCDERVLK 494

Query: 477 VLIEGLKGSSCGMPEMERPIKLGKGLYGKLVKK-QALKSLLEI 518
           V ++  KG+   + +ME+ +KLG+G++GK+VKK QAL+SLL+ 
Sbjct: 495 VFMQAFKGNGVSLVDMEKSLKLGRGVHGKVVKKQQALRSLLDF 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444416|ref|XP_002265832.1| PREDICTED: uncharacterized protein LOC100253788 [Vitis vinifera]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/523 (70%), Positives = 431/523 (82%), Gaps = 5/523 (0%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEAS--QLSKLKKSLCLAL 58
           ELMQQLRS+ATELLLREEW ESVQ Y+ FI LCQ  I+   Q A    L KL+KSLCLAL
Sbjct: 26  ELMQQLRSRATELLLREEWNESVQAYSHFISLCQHHISRIHQHADPDHLFKLQKSLCLAL 85

Query: 59  SNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD 118
           SNRAEARSRLRD  NAL+DC+ AL+IE +HFK LLCKGKILL LNRYS+ALDCFK  L+D
Sbjct: 86  SNRAEARSRLRDLANALQDCDGALEIEGTHFKTLLCKGKILLGLNRYSLALDCFKAALLD 145

Query: 119 AQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEI 178
            QA      + G+LE+ KKLE+QSRTGA DLSDW++NG RGK PELAEYIGAVQI KSEI
Sbjct: 146 PQAGLKCGALEGYLERCKKLEHQSRTGAFDLSDWVVNGFRGKFPELAEYIGAVQIMKSEI 205

Query: 179 SGRGLFATKNVEAGTLFLVTKAIATERGILSGEN--SNENEQLVMWKNFIDKVMESISKC 236
           SGRGLFATKNV+AGTL LVTKAIATER IL  +N  S +N QLVMWKNFIDKV+ES SKC
Sbjct: 206 SGRGLFATKNVDAGTLVLVTKAIATERCILPEQNDDSADNIQLVMWKNFIDKVVESASKC 265

Query: 237 QRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAI 296
           +R  HLIS+LS+G++ED +EVPDV+ FRPE EE   S  KLDMGKILSILDVNSLVEDA 
Sbjct: 266 KRLHHLISVLSNGEDEDVLEVPDVNLFRPETEESGLSMGKLDMGKILSILDVNSLVEDAT 325

Query: 297 SAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFD 356
           SAKVLGKN   YG+GLW L +FINHSC+PNARR+HVGD +IVH SRDVKAGEEITFAYFD
Sbjct: 326 SAKVLGKNSDYYGVGLWILPAFINHSCNPNARRLHVGDNVIVHTSRDVKAGEEITFAYFD 385

Query: 357 MLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENM 416
           +L P  KRK+M+KTWGF C CKRCKFEE + SK E+ EI++GLERG+D G+A++RLEE M
Sbjct: 386 VLSPWRKRKDMAKTWGFQCNCKRCKFEEQICSKMEIQEIQMGLERGLDMGDAIYRLEEGM 445

Query: 417 KRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLK 476
           +RW VRGKEKGYLRAS W+AY+E Y SE+ ++RWG+RIPA EAVVDSV+EAVG DER+LK
Sbjct: 446 RRWTVRGKEKGYLRASFWAAYSEAYESEKTVRRWGRRIPAVEAVVDSVLEAVGSDERVLK 505

Query: 477 VLIEGLKGS-SCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI 518
             + GLK S   G+ E+ER +KL +G+YGK+VKKQA+++L+ +
Sbjct: 506 AFMAGLKRSGGGGVVEIERAMKLARGVYGKVVKKQAMRTLISL 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562926|ref|XP_002522468.1| protein with unknown function [Ricinus communis] gi|223538353|gb|EEF39960.1| protein with unknown function [Ricinus communis]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/518 (69%), Positives = 438/518 (84%), Gaps = 2/518 (0%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           +LMQ LR KA ELLLREEW+ESVQ+YTQ I+LCQ QI++T  +   L K+KKSLCLALSN
Sbjct: 19  QLMQGLRLKANELLLREEWQESVQLYTQLINLCQDQISKTPNQ-DNLIKIKKSLCLALSN 77

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQ 120
           RAEARSRL+DFD AL+DC+QALKIES+HFK+L+CKGKILL LNRYS+ALDCFK  L+D Q
Sbjct: 78  RAEARSRLKDFDKALQDCDQALKIESTHFKSLICKGKILLCLNRYSVALDCFKTALLDQQ 137

Query: 121 ASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISG 180
            +G+LE VNG++EK KKLE+QSRTG LDLSDW+ NG RGK PELAEYIG+VQI KSE+SG
Sbjct: 138 DNGNLEIVNGYVEKCKKLEFQSRTGVLDLSDWVQNGFRGKLPELAEYIGSVQIQKSELSG 197

Query: 181 RGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTR 240
           RGLFATKN++AGTL LV KAIATERGILS ++S E+ QLVMWKNFID+V+    KC RT+
Sbjct: 198 RGLFATKNIDAGTLMLVNKAIATERGILSSKDSGEHAQLVMWKNFIDEVVGYTKKCNRTQ 257

Query: 241 HLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKV 300
           HL+  LSSG+ ED+++VP++S FRP+A E   S+E++D+ +++SILDVNSLVED+ISAKV
Sbjct: 258 HLVCTLSSGEEEDDIKVPEMSLFRPDANENEESSEEIDIVRMMSILDVNSLVEDSISAKV 317

Query: 301 LGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLP 360
           LGKN   YG GLW LASFINHSC+PNARR+HVGD+++VHASRD+KAGEEITF YFD+L P
Sbjct: 318 LGKNGDYYGFGLWVLASFINHSCNPNARRLHVGDHVLVHASRDIKAGEEITFPYFDVLSP 377

Query: 361 LEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENMKRWI 420
           L KR  MSK WGF C+CKRCKFEE + SK E+ EIE+GLERG+D G  +FRLEE MKRW+
Sbjct: 378 LYKRMAMSKAWGFRCQCKRCKFEEQVCSKDEVKEIEMGLERGLDVGAVIFRLEEGMKRWM 437

Query: 421 VRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIE 480
           VRGKEKGYLRAS W AY E Y +E+L++RWG+R+PA + VVDSV EA G DER+LKVL+ 
Sbjct: 438 VRGKEKGYLRASFWGAYNEVYSTEKLLRRWGRRLPAVDVVVDSVAEATGSDERVLKVLMA 497

Query: 481 GLKGSSCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI 518
           GLK S   + EME+ ++LG+GLYGK+VKKQA++SLLE+
Sbjct: 498 GLKRSG-NVVEMEKVMRLGRGLYGKVVKKQAMRSLLEL 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144054|emb|CBI23159.3| unnamed protein product [Vitis vinifera]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/523 (66%), Positives = 409/523 (78%), Gaps = 36/523 (6%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEAS--QLSKLKKSLCLAL 58
           ELMQQLRS+ATELLLREEW ESVQ Y+ FI LCQ  I+   Q A    L KL+KSLCLAL
Sbjct: 10  ELMQQLRSRATELLLREEWNESVQAYSHFISLCQHHISRIHQHADPDHLFKLQKSLCLAL 69

Query: 59  SNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD 118
           SNRAEARSRLRD  NAL+DC+ AL+IE +HFK LLCK                       
Sbjct: 70  SNRAEARSRLRDLANALQDCDGALEIEGTHFKTLLCKA---------------------- 107

Query: 119 AQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEI 178
                    + G+LE+ KKLE+QSRTGA DLSDW++NG RGK PELAEYIGAVQI KSEI
Sbjct: 108 ---------LEGYLERCKKLEHQSRTGAFDLSDWVVNGFRGKFPELAEYIGAVQIMKSEI 158

Query: 179 SGRGLFATKNVEAGTLFLVTKAIATERGILSGEN--SNENEQLVMWKNFIDKVMESISKC 236
           SGRGLFATKNV+AGTL LVTKAIATER IL  +N  S +N QLVMWKNFIDKV+ES SKC
Sbjct: 159 SGRGLFATKNVDAGTLVLVTKAIATERCILPEQNDDSADNIQLVMWKNFIDKVVESASKC 218

Query: 237 QRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAI 296
           +R  HLIS+LS+G++ED +EVPDV+ FRPE EE   S  KLDMGKILSILDVNSLVEDA 
Sbjct: 219 KRLHHLISVLSNGEDEDVLEVPDVNLFRPETEESGLSMGKLDMGKILSILDVNSLVEDAT 278

Query: 297 SAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFD 356
           SAKVLGKN   YG+GLW L +FINHSC+PNARR+HVGD +IVH SRDVKAGEEITFAYFD
Sbjct: 279 SAKVLGKNSDYYGVGLWILPAFINHSCNPNARRLHVGDNVIVHTSRDVKAGEEITFAYFD 338

Query: 357 MLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENM 416
           +L P  KRK+M+KTWGF C CKRCKFEE + SK E+ EI++GLERG+D G+A++RLEE M
Sbjct: 339 VLSPWRKRKDMAKTWGFQCNCKRCKFEEQICSKMEIQEIQMGLERGLDMGDAIYRLEEGM 398

Query: 417 KRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLK 476
           +RW VRGKEKGYLRAS W+AY+E Y SE+ ++RWG+RIPA EAVVDSV+EAVG DER+LK
Sbjct: 399 RRWTVRGKEKGYLRASFWAAYSEAYESEKTVRRWGRRIPAVEAVVDSVLEAVGSDERVLK 458

Query: 477 VLIEGLKGS-SCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI 518
             + GLK S   G+ E+ER +KL +G+YGK+VKKQA+++L+ +
Sbjct: 459 AFMAGLKRSGGGGVVEIERAMKLARGVYGKVVKKQAMRTLISL 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810952|emb|CAN74411.1| hypothetical protein VITISV_025097 [Vitis vinifera]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/476 (71%), Positives = 397/476 (83%), Gaps = 3/476 (0%)

Query: 46  QLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRY 105
            L KL+KSLCLALSNRAEARSRLRD  NAL+DC+ ALKIE +HFK LLCKGKILL LNRY
Sbjct: 111 HLFKLQKSLCLALSNRAEARSRLRDLANALQDCDGALKIECTHFKTLLCKGKILLGLNRY 170

Query: 106 SMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELA 165
           S+ALDCFK  L+D QA      + G+LE+ KKLE+QSRTGA DLSDW++NG RGK PELA
Sbjct: 171 SLALDCFKAALLDPQAGLKCGALEGYLERCKKLEHQSRTGAFDLSDWVVNGFRGKFPELA 230

Query: 166 EYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSGEN--SNENEQLVMWK 223
           EYIGAVQI KSEISGRGLFATKNV+AGTL LVTKAIATER IL  +N  S +N QLVMWK
Sbjct: 231 EYIGAVQIMKSEISGRGLFATKNVDAGTLVLVTKAIATERCILPEQNDDSADNIQLVMWK 290

Query: 224 NFIDKVMESISKCQRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKIL 283
           NFIDKV+ES SKC+R  HLIS+LSSG+ ED +EVPDV+ FRPE EE   S  KLDMGKIL
Sbjct: 291 NFIDKVVESASKCKRLHHLISVLSSGEXEDVLEVPDVNLFRPETEESGLSKGKLDMGKIL 350

Query: 284 SILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRD 343
           SILDVNSLVEDA SAKVLGKN   YG+GLW L +FINHSC+PNARR+HVGD++IVHASRD
Sbjct: 351 SILDVNSLVEDATSAKVLGKNSDYYGVGLWILPAFINHSCNPNARRLHVGDHVIVHASRD 410

Query: 344 VKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGI 403
           VKAGEEITFAYFD+L P  KR +M+KTWGF C CKRCKFEE + SK E+ EI++GLERG+
Sbjct: 411 VKAGEEITFAYFDVLSPWRKRTDMAKTWGFQCNCKRCKFEEQLCSKMEIQEIQMGLERGL 470

Query: 404 DAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDS 463
           D G+AV+RLEE M+RW+VRGKEKGYLRAS W+AY+E Y SE+ +KRWG+RIPA EAVVD 
Sbjct: 471 DMGDAVYRLEEGMRRWMVRGKEKGYLRASFWAAYSEAYESEKTVKRWGRRIPAVEAVVDG 530

Query: 464 VVEAVGCDERMLKVLIEGLKGS-SCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI 518
           V+EAVG DER+LK  + GLK S   G+ E+ER +KL +G+YGK+VKKQA+++L+ +
Sbjct: 531 VLEAVGSDERVLKAFMAGLKRSGGGGVVEIERAMKLARGVYGKVVKKQAMRTLISL 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435328|ref|XP_004135447.1| PREDICTED: uncharacterized protein LOC101202892 [Cucumis sativus] gi|449522881|ref|XP_004168454.1| PREDICTED: uncharacterized protein LOC101228219 [Cucumis sativus]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/519 (63%), Positives = 419/519 (80%), Gaps = 10/519 (1%)

Query: 3   MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRA 62
           MQ LRSKATELLLREEW ++V  YTQFI +C++Q   T      LSKL+KSLCLAL NRA
Sbjct: 21  MQILRSKATELLLREEWNDAVCTYTQFITICRNQTPTTN---FHLSKLQKSLCLALCNRA 77

Query: 63  EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQAS 122
           EARS+LR F+ ALRDCE+ALKIES+HFK LLCKGKILL+LNRYS AL+CFK  L D Q S
Sbjct: 78  EARSKLRIFEEALRDCEEALKIESTHFKTLLCKGKILLNLNRYSSALECFKTALFDPQVS 137

Query: 123 GSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRG 182
           G+ E +NG++EK KKLE+ S+TGA DLSDW+LNG RGK P LAE+IG +QI +S  SGRG
Sbjct: 138 GNSENLNGYVEKCKKLEHLSKTGAFDLSDWVLNGFRGKSPGLAEFIGPIQIKRSGNSGRG 197

Query: 183 LFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTRHL 242
           LFATKNV++GTL LVTKAIA ERGIL  EN +EN QLVMWKNFIDKV +S +K  +T++L
Sbjct: 198 LFATKNVDSGTLLLVTKAIAIERGILP-ENCDENAQLVMWKNFIDKVTDSATKSTKTKYL 256

Query: 243 ISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLG 302
           I +LSSG+ E+++EVP++S F+PE +++ S +E   M  ILS+LD+NSLVEDA SAKVLG
Sbjct: 257 IGLLSSGEGEEDLEVPEMSVFKPETKDQISPSE---MSNILSVLDINSLVEDANSAKVLG 313

Query: 303 KNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLE 362
           KN+  YG+GLW L SFINHSC PNARR+H+GD+I+VHASRDVKAGEEITFAYFD L   +
Sbjct: 314 KNRDYYGVGLWVLPSFINHSCIPNARRLHIGDHILVHASRDVKAGEEITFAYFDPLSSWK 373

Query: 363 KRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAGNAVFRLEENMKRWIVR 422
            RK MS+TWGF+C CKRC+FEE +S+K+E+ EIE+ +  GI+ G A+++LEE M+RW VR
Sbjct: 374 DRKRMSETWGFNCNCKRCRFEEEISNKEEMKEIEMSMRGGIEMGAAIYKLEEGMRRWTVR 433

Query: 423 GKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLIEGL 482
           GKEKGYLRAS W AY E + S++ MK+WG+RI   E VVDSVV+AVG DER++K+++E  
Sbjct: 434 GKEKGYLRASFWGAYFELFSSDKAMKKWGRRIQGMEMVVDSVVDAVGSDERVVKMMVERF 493

Query: 483 K---GSSCGMPEMERPIKLGKGLYGKLVKKQALKSLLEI 518
           K    ++ G+ EME+ +KLG+G+YGK++KKQAL+ LLE+
Sbjct: 494 KRNNNNNGGVMEMEKVLKLGRGVYGKVMKKQALRCLLEL 532

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474929|ref|XP_003607750.1| SET domain protein [Medicago truncatula] gi|355508805|gb|AES89947.1| SET domain protein [Medicago truncatula]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/523 (62%), Positives = 411/523 (78%), Gaps = 7/523 (1%)

Query: 3   MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRA 62
           MQ LRSKATEL +REEW  +++ Y+ FI LC   ++          KL KSLC++L NRA
Sbjct: 13  MQNLRSKATELFIREEWTNAIETYSHFITLCTHHLSVPHPNPLHHQKLHKSLCISLCNRA 72

Query: 63  EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQAS 122
           EA+S+LR+F++AL DC+ AL+I+++HFK+L+CKGKILL LNRYSMAL+CFK  ++  QAS
Sbjct: 73  EAKSKLREFNSALEDCDHALQIDATHFKSLVCKGKILLCLNRYSMALNCFKTAMLGNQAS 132

Query: 123 GSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSEISGRG 182
           G+ E + GF+EK KK E+ SR+G +DLSDW+LNG  GK PELAE+IGAV+I KSEISGRG
Sbjct: 133 GNCEMLVGFVEKCKKFEFLSRSGTMDLSDWVLNGFPGKAPELAEFIGAVEIRKSEISGRG 192

Query: 183 LFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQRTRHL 242
           +F TKNV+AG+L LVTKA+A ER IL G++ +E+ QLVMWKNFIDKV++ + KC +TR+L
Sbjct: 193 VFTTKNVDAGSLILVTKAVAMERSILGGKDLSEDTQLVMWKNFIDKVVDFVKKCHKTRNL 252

Query: 243 ISILSSGDNEDEVEVPDVSAFRPEAEERRSSNE--KLDMGKILSILDVNSLVEDAISAKV 300
           I  LS G+NEDE++VPDV  FRPE     +SNE  ++DM K+L+ILDVNSL EDA+SA V
Sbjct: 253 IGKLSIGENEDELDVPDVDLFRPENVGEVNSNEDVEIDMVKLLAILDVNSLTEDAVSANV 312

Query: 301 LGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLP 360
           L KN   YG+GLW L SF+NHSC PNARR+HVGDY+IVHASRD+KAGEEITFAY D L P
Sbjct: 313 LRKNNDCYGVGLWLLPSFVNHSCCPNARRLHVGDYLIVHASRDLKAGEEITFAYLDPLSP 372

Query: 361 LEKRKEMSKTWGFHCKCKRCKFE-EGMSSKQELSEIEIGLERGIDAGNAVFRLEENMKRW 419
           L KRKE+S TWG  CKCKRCKFE E + SKQE+ EIEIG+ERG+D G  V++LEE MKRW
Sbjct: 373 LNKRKELSVTWGILCKCKRCKFEGEFLLSKQEVKEIEIGIERGMDVGGLVYKLEEQMKRW 432

Query: 420 IVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERMLKVLI 479
            VRGKEKGYLRAS WS Y+E YGSER MKRWG+RIPA +AVVDS+ + VG D R+LK+L+
Sbjct: 433 KVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILM 492

Query: 480 EGLKGSSCGMP----EMERPIKLGKGLYGKLVKKQALKSLLEI 518
           E LK    G      EME+  KL + +YGK+VKKQA+++LLE+
Sbjct: 493 EELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLEL 535

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845524|ref|XP_002890643.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336485|gb|EFH66902.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/526 (63%), Positives = 422/526 (80%), Gaps = 10/526 (1%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITE---TKQEASQLSKLKKSLCLA 57
           EL+Q LRSKATELLLREEW+ES++VYT+FIDL + Q++    +      ++KL++SLCLA
Sbjct: 448 ELLQSLRSKATELLLREEWEESIKVYTEFIDLSRRQVSRNGGSDPNPDSIAKLRRSLCLA 507

Query: 58  LSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117
           L NRAEAR+RLRDF  A+RDC+QAL+IE +HFK LLCKGK+LL L++YS+AL+CFK  L+
Sbjct: 508 LCNRAEARARLRDFLEAMRDCDQALEIEKTHFKTLLCKGKVLLGLSKYSLALECFKTALL 567

Query: 118 DAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSE 177
           D QAS + ETV G++EK KKLE+Q++TGA DLSDWIL+G RG+CPELAE+IG ++I KSE
Sbjct: 568 DPQASDNFETVTGYMEKCKKLEFQAKTGAFDLSDWILSGFRGRCPELAEFIGLIEIKKSE 627

Query: 178 ISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQ 237
            SGRGLFATKN+  GT  LVTKA+A ERGIL    S E  QL+MWKNF+++V ES+ KC 
Sbjct: 628 FSGRGLFATKNIVGGTSILVTKAVAIERGILGNGESGEKAQLIMWKNFVEEVTESVRKCG 687

Query: 238 RTRHLISILSSGDNEDEVEVPDVSAFRPEA--EERRSSNEKLDMGKILSILDVNSLVEDA 295
           RTR ++S LS+G +ED +E+PD++ FRP+   E    S + LD  K+LSILDVNSLVEDA
Sbjct: 688 RTRRVVSALSTGQDEDNLEIPDIALFRPDEAFETYDDSKQSLDTEKLLSILDVNSLVEDA 747

Query: 296 ISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYF 355
           +SAKV+GKNK  YG+GLW LASFINHSC PNARR+HVGDY+IVHASRD+KAGEEITFAYF
Sbjct: 748 VSAKVMGKNKEYYGVGLWTLASFINHSCIPNARRLHVGDYVIVHASRDIKAGEEITFAYF 807

Query: 356 DMLLPLEKRKEMSKTWGFHCKCKRCKFEEGMS-SKQELSEIEIGLERGIDAGNAVFRLEE 414
           D+L PLEKRKEM+++WGF C C RCKFE  +  + QE+ E+E+GLERG+DAGNAV+ +EE
Sbjct: 808 DVLSPLEKRKEMAESWGFRCGCSRCKFESVLYVTNQEIRELEMGLERGVDAGNAVYMVEE 867

Query: 415 NMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERM 474
            MKRW V+GK+KG LRAS W  Y E Y SERLMKRWG++IP  E VVDSV + VG DER+
Sbjct: 868 GMKRWKVKGKDKGLLRASYWGIYDEIYNSERLMKRWGRKIPTVEVVVDSVSDVVGSDERL 927

Query: 475 LKVLIEGL---KGSSCGMPEMERPIKLGKGLYGKLV-KKQALKSLL 516
           +K+ +EG+    G    + EME+ +KLGKG+YGK+V KK+A+K+LL
Sbjct: 928 MKMAVEGMMKKNGGCSNIVEMEKILKLGKGVYGKVVSKKKAMKTLL 973

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478896|ref|NP_173998.2| SET domain protein 35 [Arabidopsis thaliana] gi|332192607|gb|AEE30728.1| SET domain protein 35 [Arabidopsis thaliana]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/528 (62%), Positives = 422/528 (79%), Gaps = 10/528 (1%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITET---KQEASQLSKLKKSLCLA 57
           EL+Q LRSKATELLLREEW+ES++VYT+FIDL + Q++ T     +   ++KL+KSLCLA
Sbjct: 17  ELLQSLRSKATELLLREEWEESIKVYTEFIDLSRRQVSSTGGSDPDPDSIAKLRKSLCLA 76

Query: 58  LSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117
           L NRAEAR+RLRDF  A+RDC+QAL+IE +HFK LLCKGK+LL L++YS+AL+CFK  L+
Sbjct: 77  LCNRAEARARLRDFLEAMRDCDQALEIEKTHFKTLLCKGKVLLGLSKYSLALECFKTALL 136

Query: 118 DAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSE 177
           D QAS +LETV  ++EK KKLE+Q++TGA DLSDWIL+  RGKCPELAE+IG+++I KSE
Sbjct: 137 DPQASDNLETVTVYIEKCKKLEFQAKTGAFDLSDWILSEFRGKCPELAEFIGSIEIKKSE 196

Query: 178 ISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQ 237
           +SGRGLFATKN+ AGTL LVTKA+A ERGIL      E  QL+MWKNF+++V ES+ KC 
Sbjct: 197 LSGRGLFATKNIVAGTLVLVTKAVAIERGILGNGECGEKAQLIMWKNFVEEVTESVRKCG 256

Query: 238 RTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEK--LDMGKILSILDVNSLVEDA 295
           RTR ++S LS+G  ED +E+P+++ FRP+       + K  LD  K+LSILDVNSLVEDA
Sbjct: 257 RTRRVVSALSTGQGEDSLEIPEIALFRPDEAFETCGDWKQSLDTEKLLSILDVNSLVEDA 316

Query: 296 ISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYF 355
           +S KV+GKNK  YG+GLW LASFINHSC PNARR+HVGDY+IVHASRD+K GEEI+FAYF
Sbjct: 317 VSGKVMGKNKEYYGVGLWTLASFINHSCIPNARRLHVGDYVIVHASRDIKTGEEISFAYF 376

Query: 356 DMLLPLEKRKEMSKTWGFHCKCKRCKFEEGM-SSKQELSEIEIGLERGIDAGNAVFRLEE 414
           D+L PLEKRKEM+++WGF C C RCKFE  + ++ QE+ E E+GLERG+DAGNAV+ +EE
Sbjct: 377 DVLSPLEKRKEMAESWGFCCGCSRCKFESVLYATNQEVREFEMGLERGVDAGNAVYMVEE 436

Query: 415 NMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERM 474
            MKRW V+GK+KG LRAS W  Y E Y SERLMKRWG++IP  E VVDSV + VG DER+
Sbjct: 437 GMKRWKVKGKDKGLLRASYWGVYDEIYNSERLMKRWGRKIPTMEVVVDSVSDVVGSDERL 496

Query: 475 LKVLIEGL---KGSSCGMPEMERPIKLGKGLYGKLV-KKQALKSLLEI 518
           +K+ +EG+    G    + EME+ +KLGKG+YGK+V KK+A+K+LL I
Sbjct: 497 MKMAVEGMMKKHGGFSNIVEMEKIMKLGKGVYGKVVSKKKAMKTLLGI 544

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9295736|gb|AAF87042.1|AC006535_20 T24P13.14 [Arabidopsis thaliana]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/528 (62%), Positives = 422/528 (79%), Gaps = 10/528 (1%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITET---KQEASQLSKLKKSLCLA 57
           EL+Q LRSKATELLLREEW+ES++VYT+FIDL + Q++ T     +   ++KL+KSLCLA
Sbjct: 441 ELLQSLRSKATELLLREEWEESIKVYTEFIDLSRRQVSSTGGSDPDPDSIAKLRKSLCLA 500

Query: 58  LSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117
           L NRAEAR+RLRDF  A+RDC+QAL+IE +HFK LLCKGK+LL L++YS+AL+CFK  L+
Sbjct: 501 LCNRAEARARLRDFLEAMRDCDQALEIEKTHFKTLLCKGKVLLGLSKYSLALECFKTALL 560

Query: 118 DAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSE 177
           D QAS +LETV  ++EK KKLE+Q++TGA DLSDWIL+  RGKCPELAE+IG+++I KSE
Sbjct: 561 DPQASDNLETVTVYIEKCKKLEFQAKTGAFDLSDWILSEFRGKCPELAEFIGSIEIKKSE 620

Query: 178 ISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQ 237
           +SGRGLFATKN+ AGTL LVTKA+A ERGIL      E  QL+MWKNF+++V ES+ KC 
Sbjct: 621 LSGRGLFATKNIVAGTLVLVTKAVAIERGILGNGECGEKAQLIMWKNFVEEVTESVRKCG 680

Query: 238 RTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSSNEK--LDMGKILSILDVNSLVEDA 295
           RTR ++S LS+G  ED +E+P+++ FRP+       + K  LD  K+LSILDVNSLVEDA
Sbjct: 681 RTRRVVSALSTGQGEDSLEIPEIALFRPDEAFETCGDWKQSLDTEKLLSILDVNSLVEDA 740

Query: 296 ISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYF 355
           +S KV+GKNK  YG+GLW LASFINHSC PNARR+HVGDY+IVHASRD+K GEEI+FAYF
Sbjct: 741 VSGKVMGKNKEYYGVGLWTLASFINHSCIPNARRLHVGDYVIVHASRDIKTGEEISFAYF 800

Query: 356 DMLLPLEKRKEMSKTWGFHCKCKRCKFEEGM-SSKQELSEIEIGLERGIDAGNAVFRLEE 414
           D+L PLEKRKEM+++WGF C C RCKFE  + ++ QE+ E E+GLERG+DAGNAV+ +EE
Sbjct: 801 DVLSPLEKRKEMAESWGFCCGCSRCKFESVLYATNQEVREFEMGLERGVDAGNAVYMVEE 860

Query: 415 NMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVEAVGCDERM 474
            MKRW V+GK+KG LRAS W  Y E Y SERLMKRWG++IP  E VVDSV + VG DER+
Sbjct: 861 GMKRWKVKGKDKGLLRASYWGVYDEIYNSERLMKRWGRKIPTMEVVVDSVSDVVGSDERL 920

Query: 475 LKVLIEGL---KGSSCGMPEMERPIKLGKGLYGKLV-KKQALKSLLEI 518
           +K+ +EG+    G    + EME+ +KLGKG+YGK+V KK+A+K+LL I
Sbjct: 921 MKMAVEGMMKKHGGFSNIVEMEKIMKLGKGVYGKVVSKKKAMKTLLGI 968

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
TAIR|locus:2200615	545	SDG35 "AT1G26760" [Arabidopsis	0.953	0.906	0.580	1e-155
ASPGD|ASPL0000000859	710	AN6829 [Emericella nidulans (t	0.625	0.456	0.272	8.9e-18
UNIPROTKB|G4NFZ1	746	MGG_11084 "TPR domain-containi	0.137	0.095	0.444	8.6e-14
UNIPROTKB|I3L5X6	189	SMYD3 "Uncharacterized protein	0.131	0.359	0.420	2.2e-11
UNIPROTKB|A8MXR1	148	SMYD3 "Histone-lysine N-methyl	0.131	0.459	0.405	5.9e-11
UNIPROTKB|G4MY10	770	MGG_10443 "Uncharacterized pro	0.140	0.094	0.378	2.6e-10
UNIPROTKB|Q9H7B4	428	SMYD3 "Histone-lysine N-methyl	0.131	0.158	0.405	1.3e-08
MGI|MGI:1916976	428	Smyd3 "SET and MYND domain con	0.131	0.158	0.405	1.3e-08
RGD|1562635	428	Smyd3 "SET and MYND domain con	0.131	0.158	0.405	1.3e-08
UNIPROTKB|F1NM95	243	F1NM95 "Uncharacterized protei	0.166	0.353	0.325	2.8e-08

TAIR|locus:2200615 SDG35 "AT1G26760" [Arabidopsis thaliana (taxid:3702)]

 Score = 1518 (539.4 bits), Expect = 1.0e-155, P = 1.0e-155
 Identities = 292/503 (58%), Positives = 368/503 (73%)

Query:     1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETXXXX---XXXXXXXXXXXXX 57
             EL+Q LRSKATELLLREEW+ES++VYT+FIDL + Q++ T                    
Sbjct:    17 ELLQSLRSKATELLLREEWEESIKVYTEFIDLSRRQVSSTGGSDPDPDSIAKLRKSLCLA 76

Query:    58 XXNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117
               NRAEAR+RLRDF  A+RDC+QAL+IE +HFK LLCKGK+LL L++YS+AL+CFK  L+
Sbjct:    77 LCNRAEARARLRDFLEAMRDCDQALEIEKTHFKTLLCKGKVLLGLSKYSLALECFKTALL 136

Query:   118 DAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEYIGAVQISKSE 177
             D QAS +LETV  ++EK KKLE+Q++TGA DLSDWIL+  RGKCPELAE+IG+++I KSE
Sbjct:   137 DPQASDNLETVTVYIEKCKKLEFQAKTGAFDLSDWILSEFRGKCPELAEFIGSIEIKKSE 196

Query:   178 ISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQ 237
             +SGRGLFATKN+ AGTL LVTKA+A ERGIL      E  QL+MWKNF+++V ES+ KC 
Sbjct:   197 LSGRGLFATKNIVAGTLVLVTKAVAIERGILGNGECGEKAQLIMWKNFVEEVTESVRKCG 256

Query:   238 RTRHLISILSSGDNEDEVEVPDVSAFRP-EAEERRSS-NEKLDMGKILSILDVNSLVEDA 295
             RTR ++S LS+G  ED +E+P+++ FRP EA E      + LD  K+LSILDVNSLVEDA
Sbjct:   257 RTRRVVSALSTGQGEDSLEIPEIALFRPDEAFETCGDWKQSLDTEKLLSILDVNSLVEDA 316

Query:   296 ISAXXXXXXXXXXXXXXWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYF 355
             +S               W LASFINHSC PNARR+HVGDY+IVHASRD+K GEEI+FAYF
Sbjct:   317 VSGKVMGKNKEYYGVGLWTLASFINHSCIPNARRLHVGDYVIVHASRDIKTGEEISFAYF 376

Query:   356 DMLLPLEKRKEMSKTWGFHCKCKRCKFEEGM-SSKQELSEIEIGLERGIDAGNAVFRLEE 414
             D+L PLEKRKEM+++WGF C C RCKFE  + ++ QE+ E E+GLERG+DAGNAV+ +EE
Sbjct:   377 DVLSPLEKRKEMAESWGFCCGCSRCKFESVLYATNQEVREFEMGLERGVDAGNAVYMVEE 436

Query:   415 NMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPXXXXXXXXXXXXXGCDERM 474
              MKRW V+GK+KG LRAS W  Y E Y SERLMKRWG++IP             G DER+
Sbjct:   437 GMKRWKVKGKDKGLLRASYWGVYDEIYNSERLMKRWGRKIPTMEVVVDSVSDVVGSDERL 496

Query:   475 LKVLIEGLK---GSSCGMPEMER 494
             +K+ +EG+    G    + EME+
Sbjct:   497 MKMAVEGMMKKHGGFSNIVEMEK 519

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000000859 AN6829 [Emericella nidulans (taxid:162425)]

 Score = 246 (91.7 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 95/348 (27%), Positives = 143/348 (41%)

Query:    60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDA 119
             NRA +  +  +F+ ALRD +       S  KAL  K + L  L R+  +  C    ++  
Sbjct:   246 NRALSSLKAHEFEAALRDLDLQPTDPKSLEKALFRKAQALYHLGRFRES--CETHEILAK 303

Query:   120 QASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPEL--AEYIGAVQISKSE 177
             Q   +      F   + +L  Q + G            +   P+L  A YIG V +  ++
Sbjct:   304 QFPENTIAKTEFSRANARLAEQQK-GQYQFKRLQREAAKRVPPQLDHATYIGPVAVKMTD 362

Query:   178 ISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNENEQLVMWKNFIDKVMESISKCQ 237
               GRGLF T  V+AG L L  KA A      + +N   N  L++  N   K M   ++ Q
Sbjct:   363 SRGRGLFTTAAVKAGDLLLCEKAFA--HTFHTAKNPKRNLSLLL--NLEAKAMTIGTQAQ 418

Query:   238 RTRHLISILSSGDNEDEVEVPDV--SAFRPEAEERRSSNEKLDMGKILSILDVN------ 289
                 L+  LS      EV   D+    F+P           +D   +   + +N      
Sbjct:   419 LMSLLVQKLSKNPKLGEV-FRDLYHGGFQPVDVSEVDGLPVVDTFLVERAMSLNCFGCPA 477

Query:   290 ----SLVEDAISAXXXXXXXXXXXXXXWALASFINHSCSPNARRVHVGDYIIVHASRDVK 345
                 S +E                   W LAS+INHSC  NARR  +GD +++ A+RD+ 
Sbjct:   478 SSRESHIESIRVRGPENGEKVFESCGIWPLASYINHSCDSNARRSFIGDMMVIRATRDLP 537

Query:   346 AGEEITFAYFDMLLPLEKRKEMS-KTWGFHCKCKRCKFEEGMSSKQEL 392
                E+TF Y   L+     K M  + WGF C C  C  +   +++ EL
Sbjct:   538 DNTELTFWYESPLIGGSAAKAMDLQHWGFKCSCIICT-DIAQTNRNEL 584

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4NFZ1 MGG_11084 "TPR domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 178 (67.7 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
 Identities = 32/72 (44%), Positives = 44/72 (61%)

Query:   313 WALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKT-W 371
             W  A++ NH+C PNA R  +GD +IV A+RD+ AG EI   Y  +  P E R+   KT +
Sbjct:   506 WLHAAYANHTCIPNATRAFIGDMMIVRAARDIPAGAEIFMGYASLAEPFESRRSKFKTSY 565

Query:   372 GFHCKCKRCKFE 383
             GF C C+ C+ E
Sbjct:   566 GFECDCEMCRAE 577

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3L5X6 SMYD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 29/69 (42%), Positives = 45/69 (65%)

Query:   317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLE-KRKEMSKTWGFHC 375
             S +NHSC PN   V  G ++++ A RD++AGEE+T  Y DML+  E +RK++   + F C
Sbjct:    32 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEAGEELTICYLDMLMTSEERRKQLRDQYCFEC 91

Query:   376 KCKRCKFEE 384
              C RC+ ++
Sbjct:    92 DCFRCQTQD 100

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

UNIPROTKB|A8MXR1 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 28/69 (40%), Positives = 44/69 (63%)

Query:   317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLE-KRKEMSKTWGFHC 375
             S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+  E +RK++   + F C
Sbjct:    13 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 72

Query:   376 KCKRCKFEE 384
              C RC+ ++
Sbjct:    73 DCFRCQTQD 81

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

UNIPROTKB|G4MY10 MGG_10443 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 145 (56.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 28/74 (37%), Positives = 41/74 (55%)

Query:   313 WALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRK-EMSKTW 371
             W LA+ +NH+C  +  R  VGD  I  A RD++ GEE+T  Y  +   +  R+ +  + W
Sbjct:   491 WPLAAAMNHACVASTVRAFVGDVFITRALRDIEPGEELTQQYVPVRADVGARQGQYGQWW 550

Query:   372 GFHCKCKRCKFEEG 385
             GF C C  C  E+G
Sbjct:   551 GFECGCVLCAAEKG 564

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9H7B4 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 28/69 (40%), Positives = 44/69 (63%)

Query:   317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLE-KRKEMSKTWGFHC 375
             S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+  E +RK++   + F C
Sbjct:   202 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 261

Query:   376 KCKRCKFEE 384
              C RC+ ++
Sbjct:   262 DCFRCQTQD 270

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISS

MGI|MGI:1916976 Smyd3 "SET and MYND domain containing 3" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query:   317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLE-KRKEMSKTWGFHC 375
             S +NHSC PN   V  G ++++ A R+++AGEE+T  Y DML+  E +RK++   + F C
Sbjct:   202 SLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYLDMLMTSEERRKQLRDQYCFEC 261

Query:   376 KCKRCKFEE 384
              C RC+ ++
Sbjct:   262 DCIRCQTQD 270

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1562635 Smyd3 "SET and MYND domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query:   317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLE-KRKEMSKTWGFHC 375
             S +NHSC PN   V  G ++++ A R+++AGEE+T  Y DML+  E +RK++   + F C
Sbjct:   202 SLLNHSCDPNCSIVFNGPHLLLRAVREIEAGEELTICYLDMLMTSEERRKQLRDQYCFEC 261

Query:   376 KCKRCKFEE 384
              C RC+ ++
Sbjct:   262 DCIRCQTQD 270

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=ISO

UNIPROTKB|F1NM95 F1NM95 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 150 (57.9 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 29/89 (32%), Positives = 54/89 (60%)

Query:   317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
             S +NHSC PN   +  G  +++ + R+++ GEE+T +Y + L+P  E++K++ + + F C
Sbjct:    49 SLLNHSCDPNCVIIFEGYQLLLRSIREIQIGEELTISYIESLMPTSERQKQLKRQYCFEC 108

Query:   376 KCKRCKFEEGMS-SKQELSEIEIGLERGI 403
              C  C+ +E +  +K+ L+  E    RGI
Sbjct:   109 DCCLCQDQEKVGWAKKSLAN-EAEFSRGI 136

GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.43	0.737
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	518
pfam00856	113	pfam00856, SET, SET domain	6e-14
smart00317	124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	3e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-08
COG2940	480	COG2940, COG2940, Proteins containing SET domain [	3e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002
smart00317	124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	0.004
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.004
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.004

>gnl|CDD|216155 pfam00856, SET, SET domain

 Score = 67.9 bits (166), Expect = 6e-14
 Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 264 RPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSC 323
            PE  E R      +  + L       L               +   GL  +A FINHSC
Sbjct: 25  TPEEAEERELLYNKEELRGLLSDLELFLSRL-------DSEYDIDATGLGNVARFINHSC 77

Query: 324 SPNARRVHV----GDYIIVHASRDVKAGEEITFAY 354
            PN     V    GD I+V A RD+K GEE+T  Y
Sbjct: 78  EPNCEVRFVFVNGGDRIVVRALRDIKPGEELTIDY 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 315 LASFINHSCSPNARRVHV----GDYIIVHASRDVKAGEEITFAYFD 356
           LA FINHSC PN   + V     D I++ A RD+K GEE+T  Y  
Sbjct: 74  LARFINHSCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGS 119

Putative methyl transferase, based on outlier plant homologues. Length = 124

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 18/113 (15%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           + L +         ++ E+++ Y + ++L                        A  N A 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD------------------AYYNLAA 42

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A  +L  ++ AL D E+AL+++  + KA    G     L +Y  AL+ +++ L
Sbjct: 43  AYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95

Length = 100

>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only]

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 315 LASFINHSCSPN--ARRVHVGD--YIIVHASRDVKAGEEITFAY-FDMLLPLEKRKEMSK 369
           +A FINHSC+PN  A  + V     I ++A RD+KAGEE+T+ Y   +    E +K + K
Sbjct: 405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEK 464

Query: 370 TWGFHCKCKRCK 381
            WG  C   RC 
Sbjct: 465 RWGCACGEDRCS 476

Length = 480

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 56  LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN-RYSMALDCFKE 114
            AL N   A  +L D+D A+   E+AL+++  + +A        L L   Y  AL+  ++
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 115 TL 116
            L
Sbjct: 64  AL 65

Length = 69

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSH-------FKALLCKGKILLSLNRYSMAL 109
           AL+N A    RL D+D AL   E+AL++            +AL    ++ L+L  Y  AL
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 110 DCFKETL 116
           +  ++ L
Sbjct: 67  EYLEKAL 73

Length = 78

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 19/85 (22%)

Query: 1  ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
          +  + L++    L    ++ E+++ Y + ++L                        A  N
Sbjct: 1  DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAE------------------AYYN 42

Query: 61 RAEARSRL-RDFDNALRDCEQALKI 84
           A A  +L +D++ AL D E+AL++
Sbjct: 43 LALAYLKLGKDYEEALEDLEKALEL 67

Length = 69

>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 171 VQISKSEISGRGLFATKNVEAGTLFLVTKAIATERG-ILSGENSNENEQLVMWKNFIDKV 229
           +++ KS   G G+ AT+++  G             G I++ E + E  +           
Sbjct: 3   LEVFKSPGKGWGVRATEDIPKGEFIGE------YVGEIITSEEAEERPKAYDTDGAKAFY 56

Query: 230 M 230
           +
Sbjct: 57  L 57

Putative methyl transferase, based on outlier plant homologues. Length = 124

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH 88
          AL N   A  +L  +D AL   E+AL++  ++
Sbjct: 3  ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH 88
          AL N   A  +L D+D AL   E+AL+++ ++
Sbjct: 3  ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	518
KOG0553	304	consensus TPR repeat-containing protein [General f	99.82
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.7
KOG4234	271	consensus TPR repeat-containing protein [General f	99.66
PF00856	162	SET: SET domain; InterPro: IPR001214 The SET domai	99.63
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.62
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.52
smart00317	116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	99.52
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.5
PRK15359	144	type III secretion system chaperone protein SscB;	99.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.49
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.47
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.46
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.42
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.38
KOG2084	482	consensus Predicted histone tail methylase contain	99.38
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.35
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.3
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.27
PRK11189	296	lipoprotein NlpI; Provisional	99.25
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.22
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.2
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.11
KOG4442	729	consensus Clathrin coat binding protein/Huntingtin	99.1
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.07
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.06
PRK15331	165	chaperone protein SicA; Provisional	99.06
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.04
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.04
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.01
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.0
PRK12370	553	invasion protein regulator; Provisional	98.99
KOG1126	638	consensus DNA-binding cell division cycle control	98.99
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.99
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.96
PRK15359	144	type III secretion system chaperone protein SscB;	98.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.92
PRK11189	296	lipoprotein NlpI; Provisional	98.92
PRK12370	553	invasion protein regulator; Provisional	98.91
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.89
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.87
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.86
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.84
KOG4555	175	consensus TPR repeat-containing protein [Function	98.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.83
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.81
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.8
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.8
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.79
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.79
KOG1126	638	consensus DNA-binding cell division cycle control	98.79
KOG1080	1005	consensus Histone H3 (Lys4) methyltransferase comp	98.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.78
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.77
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.77
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.77
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.75
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.74
KOG1125	579	consensus TPR repeat-containing protein [General f	98.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.73
PLN02789	320	farnesyltranstransferase	98.72
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.68
PF13512	142	TPR_18: Tetratricopeptide repeat	98.68
PRK10803	263	tol-pal system protein YbgF; Provisional	98.66
KOG2589	453	consensus Histone tail methylase [Chromatin struct	98.66
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.61
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.59
PF13371	73	TPR_9: Tetratricopeptide repeat	98.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.58
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.58
KOG1310	758	consensus WD40 repeat protein [General function pr	98.56
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.56
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.55
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.55
PLN02789	320	farnesyltranstransferase	98.53
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.53
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.53
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.51
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.5
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.49
KOG2076	895	consensus RNA polymerase III transcription factor	98.49
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.48
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.47
PF13371	73	TPR_9: Tetratricopeptide repeat	98.46
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.45
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.44
PF12688	120	TPR_5: Tetratrico peptide repeat	98.44
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.43
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.43
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.42
KOG2003	840	consensus TPR repeat-containing protein [General f	98.38
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.37
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.32
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.29
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.29
KOG1125	579	consensus TPR repeat-containing protein [General f	98.27
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.26
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.25
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.24
KOG0553	304	consensus TPR repeat-containing protein [General f	98.24
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.24
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.24
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.24
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.22
PRK14574	822	hmsH outer membrane protein; Provisional	98.22
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.19
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.18
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.15
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.15
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.15
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.09
KOG1129	478	consensus TPR repeat-containing protein [General f	98.08
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.05
COG2940	480	Proteins containing SET domain [General function p	98.03
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.03
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.01
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.01
KOG1085	392	consensus Predicted methyltransferase (contains a	98.01
KOG1082	364	consensus Histone H3 (Lys9) methyltransferase SUV3	98.0
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.0
PRK14574	822	hmsH outer membrane protein; Provisional	97.98
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.97
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.95
KOG2076	895	consensus RNA polymerase III transcription factor	97.95
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.94
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.93
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.93
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.9
KOG4234	271	consensus TPR repeat-containing protein [General f	97.89
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.88
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.87
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.84
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.84
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.83
PF13431	34	TPR_17: Tetratricopeptide repeat	97.83
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.81
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.8
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.79
PRK11906	458	transcriptional regulator; Provisional	97.78
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.75
PRK11906	458	transcriptional regulator; Provisional	97.75
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.73
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.73
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.73
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.72
KOG1083	1306	consensus Putative transcription factor ASH1/LIN-5	97.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.65
PF13428	44	TPR_14: Tetratricopeptide repeat	97.63
KOG1129	478	consensus TPR repeat-containing protein [General f	97.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.59
PF12688	120	TPR_5: Tetratrico peptide repeat	97.56
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.53
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.51
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.47
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.47
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.45
PF13431	34	TPR_17: Tetratricopeptide repeat	97.44
PRK10803	263	tol-pal system protein YbgF; Provisional	97.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.4
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.36
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.35
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.35
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.32
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.31
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.27
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.24
KOG2003	840	consensus TPR repeat-containing protein [General f	97.21
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.21
PRK10941	269	hypothetical protein; Provisional	97.09
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.07
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.03
PRK15331	165	chaperone protein SicA; Provisional	97.02
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.0
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.98
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.96
KOG1338	466	consensus Uncharacterized conserved protein [Funct	96.94
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.9
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.9
PF13428	44	TPR_14: Tetratricopeptide repeat	96.87
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.84
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.78
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.76
KOG1141	1262	consensus Predicted histone methyl transferase [Ch	96.74
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.73
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.73
PF13512	142	TPR_18: Tetratricopeptide repeat	96.63
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.55
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.53
KOG4555	175	consensus TPR repeat-containing protein [Function	96.53
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.51
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.47
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.39
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.39
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.34
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.22
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.2
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.18
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.11
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.08
KOG1079	739	consensus Transcriptional repressor EZH1 [Transcri	96.0
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.98
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.94
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.84
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.78
KOG1337	472	consensus N-methyltransferase [General function pr	95.74
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.72
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.57
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.52
PRK04841	903	transcriptional regulator MalT; Provisional	95.47
KOG2471	696	consensus TPR repeat-containing protein [General f	95.47
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.41
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.39
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.31
PRK10941	269	hypothetical protein; Provisional	95.27
KOG1586	288	consensus Protein required for fusion of vesicles	95.26
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.21
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.2
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.15
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.1
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.1
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.01
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.97
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.93
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.91
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.91
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.87
PLN03218	1060	maturation of RBCL 1; Provisional	94.8
PLN03218	1060	maturation of RBCL 1; Provisional	94.76
PRK04841	903	transcriptional regulator MalT; Provisional	94.75
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.74
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.67
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	94.66
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.61
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.48
COG2912	269	Uncharacterized conserved protein [Function unknow	94.34
KOG1585	308	consensus Protein required for fusion of vesicles	94.19
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.15
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.15
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.12
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.09
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	94.07
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.05
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.9
KOG1585	308	consensus Protein required for fusion of vesicles	93.8
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.76
KOG1586	288	consensus Protein required for fusion of vesicles	93.51
PLN03077	857	Protein ECB2; Provisional	93.49
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.45
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.36
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.27
KOG2471	696	consensus TPR repeat-containing protein [General f	92.99
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.72
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.65
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.35
PLN03077	857	Protein ECB2; Provisional	92.31
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	92.24
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.1
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.08
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.0
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.95
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.72
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	91.65
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.58
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.34
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.11
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.79
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.32
KOG3364	149	consensus Membrane protein involved in organellar	90.17
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	90.15
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.93
KOG3364	149	consensus Membrane protein involved in organellar	89.0
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	88.9
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	88.79
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	88.08
COG2912	269	Uncharacterized conserved protein [Function unknow	87.52
KOG1081	463	consensus Transcription factor NSD1 and related SE	87.18
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	86.88
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	86.81
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	86.7
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	86.13
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.83
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	85.78
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.47
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	85.31
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	85.31
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.02
COG3947	361	Response regulator containing CheY-like receiver a	84.77
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	84.7
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.32
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.76
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	83.67
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	83.41
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.36
PF04212	69	MIT: MIT (microtubule interacting and transport) d	83.29
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	83.18
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	82.87
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	82.82
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	82.51
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	82.49
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.44
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	81.48
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.29

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=5.7e-20  Score=175.55  Aligned_cols=104  Identities=31%  Similarity=0.549  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+|.+||.+++.++|++|++.|++||.++|.++.                  +|+|||.+|.++|+|+.|++||+.|
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV------------------yycNRAAAy~~Lg~~~~AVkDce~A  141 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV------------------YYCNRAAAYSKLGEYEDAVKDCESA  141 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch------------------HHHHHHHHHHHhcchHHHHHHHHHH
Confidence            5789999999999999999999999999999999988                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      |.+||.+.|+|-|+|.+|+.+|+|++|++.|+++| ++|++..
T Consensus       142 l~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~  184 (304)
T KOG0553|consen  142 LSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES  184 (304)
T ss_pred             HhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence            99999999999999999999999999999999999 8886653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.3e-16  Score=156.76  Aligned_cols=133  Identities=17%  Similarity=0.339  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+...+..||.+|+.|+|..|+..|.+|+...+....   .++++.......+..+++|+|.|++++++|.+|+..|+++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~---~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS---FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc---CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            3567899999999999999999999999998876543   2334445566677889999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK  137 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~  137 (518)
                      |+++|+|+||+||+|+|+..+|+|+.|+..|++++ ..|+|.....++..+.++.++
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 777654433444444333333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=8e-16  Score=138.38  Aligned_cols=108  Identities=26%  Similarity=0.461  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++..||.+|+.|+|++|...|+.||+++|....             .+..++|.|||.|+++++.++.|+.+|.+|
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-------------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-------------EERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-------------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            4678999999999999999999999999999988653             234569999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      |+++|++.+|+.|+|.+|..+..|++|+.+|++.+ .+|...
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            99999999999999999999999999999999999 777544

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Probab=99.63  E-value=6.6e-16  Score=139.34  Aligned_cols=49  Identities=41%  Similarity=0.738  Sum_probs=44.3

Q ss_pred             cceeEeecccccccCCCCCCceEEee----CCEEEEEEcCCCCCCCeEEeecC
Q 035535          307 LYGLGLWALASFINHSCSPNARRVHV----GDYIIVHASRDVKAGEEITFAYF  355 (518)
Q Consensus       307 ~~~~gl~~~~s~~NHsC~PN~~~~~~----~~~~~v~A~rdI~~Geeit~sY~  355 (518)
                      ..+.+|||.++++||||.|||.+.++    ++.++|+|+|||++||||||||+
T Consensus       110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG  162 (162)
T PF00856_consen  110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG  162 (162)
T ss_dssp             EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred             ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence            45789999999999999999999998    78999999999999999999996

The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.4e-15  Score=152.16  Aligned_cols=115  Identities=24%  Similarity=0.410  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+++.+..||.+|+.|+|..|+.+|++||..+|+++.                  +|+|||.||.+++++..|+.||+.+
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~------------------lYsNRAac~~kL~~~~~aL~Da~~~  418 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR------------------LYSNRAACYLKLGEYPEALKDAKKC  418 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH------------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3677899999999999999999999999999999987                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      +++||++.++|+|+|.++..+.+|+.|+++|++++ .+|   .+ .++...+.+|-+.
T Consensus       419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp---~~-~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP---SN-AEAIDGYRRCVEA  472 (539)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---hh-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 664   23 4555666666553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=2.5e-14  Score=143.89  Aligned_cols=117  Identities=25%  Similarity=0.384  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+.+++++||.+|+.|+|++||.+|++||+++|+.+.                  .|.|||.||..+|+|++.+++|.+|
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi------------------FYsNraAcY~~lgd~~~Vied~TkA  175 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI------------------FYSNRAACYESLGDWEKVIEDCTKA  175 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch------------------hhhhHHHHHHHHhhHHHHHHHHHHH
Confidence            4778999999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc--cccCCcHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD--AQASGSLETVNGFLEKSK  136 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~--p~~~~~~~~l~~~l~~~~  136 (518)
                      |+++|+++|+|+|++.++..+|++++|+.+..-.-+.  -++......+.+.+.+..
T Consensus       176 LEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a  232 (606)
T KOG0547|consen  176 LELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA  232 (606)
T ss_pred             hhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999988765433  233333344445554443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=2.6e-14  Score=145.74  Aligned_cols=104  Identities=22%  Similarity=0.372  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +.+++.+||.+|..|+|+.|+.+|+.||.++|.+..                  +|+||+.||.++|+|++|++|..+.+
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv------------------lySnrsaa~a~~~~~~~al~da~k~~   63 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV------------------LYSNRSAAYASLGSYEKALKDATKTR   63 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc------------------hhcchHHHHHHHhhHHHHHHHHHHHH
Confidence            567899999999999999999999999999999876                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      +++|+++|+|.|+|.++..+|+|++|+..|.++| .+|++...
T Consensus        64 ~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L  106 (539)
T KOG0548|consen   64 RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQL  106 (539)
T ss_pred             hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHH
Confidence            9999999999999999999999999999999999 77765543

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Probab=99.52  E-value=4.8e-14  Score=120.42  Aligned_cols=44  Identities=45%  Similarity=0.750  Sum_probs=39.3

Q ss_pred             EeecccccccCCCCCCceEEeeC--C--EEEEEEcCCCCCCCeEEeec
Q 035535          311 GLWALASFINHSCSPNARRVHVG--D--YIIVHASRDVKAGEEITFAY  354 (518)
Q Consensus       311 gl~~~~s~~NHsC~PN~~~~~~~--~--~~~v~A~rdI~~Geeit~sY  354 (518)
                      .++|.++++||||.|||...+..  +  .+.++|+|||++|||||++|
T Consensus        69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y  116 (116)
T smart00317       69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY  116 (116)
T ss_pred             ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence            37888999999999999987653  2  69999999999999999999

Putative methyl transferase, based on outlier plant homologues

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=9.8e-14  Score=137.30  Aligned_cols=115  Identities=22%  Similarity=0.364  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ..+.+++.||.+|+.|+|..|.++|+.||.++|++..              -.+.+|.|||.+..++|+..+|+.||+.|
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~--------------~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK--------------TNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc--------------hhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            4678999999999999999999999999999999765              12349999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNG  130 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~  130 (518)
                      +++||...|+|.++|.|+..+++|++|+++|++++....+......+.+
T Consensus       314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~  362 (486)
T KOG0550|consen  314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLRE  362 (486)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            9999999999999999999999999999999999954333433333333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.50  E-value=4e-13  Score=119.95  Aligned_cols=108  Identities=13%  Similarity=0.150  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..++..|+|++|+..|.+++.++|.+..                  +|.++|.++..+|++++|+..++++++
T Consensus        25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR------------------AHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            44667899999999999999999999999999877                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVN  129 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~  129 (518)
                      ++|+++.+++++|.++..+|++++|+..|++++ ..|+++.......
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            999999999999999999999999999999999 8887776543333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.49  E-value=2.8e-13  Score=139.08  Aligned_cols=114  Identities=25%  Similarity=0.417  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..|..+|+.+|..|+|++|+..|++||+++|+++.                  +|+++|.+++++|+|++|+.++++|+
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~------------------a~~~~a~~~~~~g~~~eAl~~~~~Al   63 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE------------------LYADRAQANIKLGNFTEAVADANKAI   63 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            457889999999999999999999999999999876                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      +++|+++.+|+++|.+|+.+|+|++|+..|++++ ..|+++.    +...+.+|...
T Consensus        64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~----~~~~l~~~~~k  116 (356)
T PLN03088         64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR----FTKLIKECDEK  116 (356)
T ss_pred             HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Confidence            9999999999999999999999999999999999 7776543    44445555443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.47  E-value=1.3e-13  Score=133.26  Aligned_cols=115  Identities=18%  Similarity=0.245  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ..+++++||.||++|.|++||++|++++..+|.++.                  .+.|||.+|+++.+|..|..||+.|+
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV------------------~~~NRA~AYlk~K~FA~AE~DC~~Ai  158 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV------------------YHINRALAYLKQKSFAQAEEDCEAAI  158 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc------------------chhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            456899999999999999999999999999999887                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      .+|..+.|||-|+|.+-..||...+|.++++.+| +.|.    ..++.+.+..+..+.
T Consensus       159 aLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~----~~ELkK~~a~i~Sl~  212 (536)
T KOG4648|consen  159 ALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPK----NIELKKSLARINSLR  212 (536)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc----cHHHHHHHHHhcchH
Confidence            9999999999999999999999999999999999 7764    245666665555443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.2e-12  Score=121.48  Aligned_cols=130  Identities=17%  Similarity=0.195  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...++++||.+|+.|+|.+|+..|..||....+-.....+...++.++.+....++.|.++|++..|+|.++++.|..+|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999998765544333444556778888888999999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      ..+|+|+||||++|++.....+.++|..+|.++| ++|.   ....+...++.+
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps---lasvVsrElr~l  308 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS---LASVVSRELRLL  308 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh---hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 6653   334444444433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=7.1e-13  Score=128.00  Aligned_cols=101  Identities=28%  Similarity=0.449  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .|+.++..||.+|+.++|..|+..|+++|...-.+++              +.+.+|.|||.|.+.+|+|..|+.||.+|
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d--------------lnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD--------------LNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc--------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999988655544              33459999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +.++|+|.|+++|-|.|++.|.++.+|.+..+..+
T Consensus       146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL  180 (390)
T ss_pred             HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999988877

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.38  E-value=6.5e-12  Score=111.18  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ..+.+...|..++..|++++|...|+-...++|.+..                  .|+|+|.|+..+|+|.+|+..|.+|
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~------------------y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD------------------YWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4678889999999999999999999999999999987                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                      +.++|+++.++++.|.|++.+|+.+.|.++|+.++.
T Consensus        96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363         96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999993

>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]

Probab=99.38  E-value=2.5e-12  Score=137.59  Aligned_cols=80  Identities=33%  Similarity=0.606  Sum_probs=72.7

Q ss_pred             cceeEeecccccccCCCCCCceEEeeCCEEEEEEcCCCCCCC-eEEeecCCCCCCHHHHHH-hcccCCeEeecCCCCCCC
Q 035535          307 LYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGE-EITFAYFDMLLPLEKRKE-MSKTWGFHCKCKRCKFEE  384 (518)
Q Consensus       307 ~~~~gl~~~~s~~NHsC~PN~~~~~~~~~~~v~A~rdI~~Ge-eit~sY~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~~  384 (518)
                      ..+.|+||..+++||||.||+...|++....+++..++.+++ ||+++|++..+++..|+. |...|.|.|.|++|.+|+
T Consensus       197 ~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~  276 (482)
T KOG2084|consen  197 FLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPT  276 (482)
T ss_pred             cceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCC
Confidence            368999999999999999999999999999999999888887 999999999999999986 777888999999999886


Q ss_pred             CC
Q 035535          385 GM  386 (518)
Q Consensus       385 ~~  386 (518)
                      +.
T Consensus       277 ~~  278 (482)
T KOG2084|consen  277 EL  278 (482)
T ss_pred             cc
Confidence            43

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.35  E-value=1.3e-11  Score=116.15  Aligned_cols=119  Identities=14%  Similarity=0.189  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHH-HhccC--HHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEAR-SRLRD--FDNALRDC   78 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~-~~lg~--~~~Al~~~   78 (518)
                      +++.|...|..+...|++++|+..|.+|+.+.|+++.                  ++.++|.++ ...|+  +++|.+.+
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~------------------~~~~lA~aL~~~~g~~~~~~A~~~l  133 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE------------------LYAALATVLYYQAGQHMTPQTREMI  133 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            5778999999999999999999999999999999887                  999999985 67787  59999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        79 ~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      +++++++|+++.+++.+|.+++.+|+|++|+.+|++++ ..|.+.+....+ +-++..+.++
T Consensus       134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i-~~i~~a~~~~  194 (198)
T PRK10370        134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV-ESINMAKLLQ  194 (198)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH-HHHHHHHHHh
Confidence            99999999999999999999999999999999999999 777655544444 4455554443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.7e-12  Score=118.81  Aligned_cols=119  Identities=19%  Similarity=0.350  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+++.||.+|..+.|..||.+|++||.+.|..+.                  .|-|||.||+++++++.+.+||.+|
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~------------------Y~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS------------------YYTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcch------------------hhhhHHHHHHHhhhhhhhhhhHHHH
Confidence            4688999999999999999999999999999999887                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-h-ccccCCcHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-V-DAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~-~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      ++++|+.++++|.+|.+++....|++|+..+++|. + ..........+...+..++.+
T Consensus        71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            99999999999999999999999999999999995 2 211222334566666665543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.30  E-value=5.2e-11  Score=104.64  Aligned_cols=104  Identities=13%  Similarity=0.210  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++......|..++..|++++|+..|++++..+|.++.                  ++.++|.++.++|++++|+..++++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR------------------YWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ++++|+++..++.+|.++...|++++|+..|++++ ..|+++.
T Consensus        78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            99999999999999999999999999999999999 7775544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.27  E-value=5.1e-12  Score=128.24  Aligned_cols=117  Identities=21%  Similarity=0.351  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+++++|.+|+.+.|+.|+..|++||+++|+.+.                  .+.|||.++++.++|..|+.|+.+|
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~------------------~~anRa~a~lK~e~~~~Al~Da~ka   64 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI------------------YFANRALAHLKVESFGGALHDALKA   64 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee------------------eechhhhhheeechhhhHHHHHHhh
Confidence            4678999999999999999999999999999999987                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      ++++|...|+|+|+|.+...+++|.+|+..|++.. ..|+++.    +.+.+..|.....
T Consensus        65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~----~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD----ATRKIDECNKIVS  120 (476)
T ss_pred             hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH----HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 7775554    4455556655543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=4.6e-11  Score=119.80  Aligned_cols=102  Identities=17%  Similarity=0.107  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.+.++|..+...|++++|+..|++++.++|+++.                  +|.++|.++..+|++++|+..+++++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~Al  125 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD------------------AYNYLGIYLTQAGNFDAAYEAFDSVL  125 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            566889999999999999999999999999999876                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +++|++..+|+++|.+++..|++++|++.|++++ ..|+++
T Consensus       126 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        126 ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999 777665

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.22  E-value=8.2e-11  Score=130.05  Aligned_cols=97  Identities=21%  Similarity=0.329  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..++++|+.+|+.|+|++|+..|+++|.+.|+ +.                  .|.|+|.||+++|+|++|++++++|+
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~------------------~~~n~a~~~~~l~~~~~Ai~~~~~al  187 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PV------------------YYSNRAACHNALGDWEKVVEDTTAAL  187 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hH------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            567899999999999999999999999999885 33                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                      +++|++.++|+++|.+|..+|+|++|+.+|.++...
T Consensus       188 ~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~  223 (615)
T TIGR00990       188 ELDPDYSKALNRRANAYDGLGKYADALLDLTASCII  223 (615)
T ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999888743

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.20  E-value=7.6e-11  Score=121.91  Aligned_cols=112  Identities=13%  Similarity=0.171  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++...+.|..+-++|++++|+.+|++||++.|..++                  +|.|+|.+|-.+|+-..|++++.+||
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd------------------a~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD------------------ALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH------------------HHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            556677777777888888888888888888877766                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      .++|..+.|+-++|.+|...|+..+|++.|+.++ +.|+.|+..-++...+
T Consensus       450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence            9999999999999999999999999999999999 8888887655544443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.20  E-value=5.3e-11  Score=91.91  Aligned_cols=68  Identities=22%  Similarity=0.361  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Q 035535            1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCE   79 (518)
Q Consensus         1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~   79 (518)
                      +++..|...|..++..|+|++|+..|+++|+++|+++.                  +++|+|.++.++| ++.+|+++++
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~------------------~~~~~g~~~~~~~~~~~~A~~~~~   62 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE------------------AYYNLGLAYMKLGKDYEEAIEDFE   62 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH------------------HHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHhCccHHHHHHHHH
Confidence            46889999999999999999999999999999999877                  9999999999999 7999999999


Q ss_pred             HHHhcCC
Q 035535           80 QALKIES   86 (518)
Q Consensus        80 ~al~l~p   86 (518)
                      ++++++|
T Consensus        63 ~al~l~P   69 (69)
T PF13414_consen   63 KALKLDP   69 (69)
T ss_dssp             HHHHHST
T ss_pred             HHHHcCc
Confidence            9999998

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.11  E-value=1.5e-10  Score=119.78  Aligned_cols=119  Identities=15%  Similarity=0.204  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +.++.+.||.+-..+.|+.|+.+|.+|+.+.|+++.                  ++.|+|-+|...|..+-|+..|++||
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~------------------a~gNla~iYyeqG~ldlAI~~Ykral  313 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV------------------AHGNLACIYYEQGLLDLAIDTYKRAL  313 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh------------------hccceEEEEeccccHHHHHHHHHHHH
Confidence            466778888888888888888888888888887766                  67777777777777777777777777


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      +++|+.+.||.++|.++-..|+..+|.++|.+|+ ..|.+++...++....+...+++
T Consensus       314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e  371 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE  371 (966)
T ss_pred             hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence            7777777777777777777777777777777777 66666666556655555544443

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=7.7e-11  Score=123.55  Aligned_cols=61  Identities=36%  Similarity=0.482  Sum_probs=46.2

Q ss_pred             ccccccCCCCCCceEE---eeC-CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCC
Q 035535          315 LASFINHSCSPNARRV---HVG-DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKF  382 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~---~~~-~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~  382 (518)
                      .+.|+||||+|||..-   +.| -+|-|+|.|+|++|||||+.|-....+.+..+       +.|.-+.|+.
T Consensus       193 laRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~-------CyCgeanC~G  257 (729)
T KOG4442|consen  193 LARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQP-------CYCGEANCRG  257 (729)
T ss_pred             HHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccc-------cccCCccccc
Confidence            4679999999999743   333 28899999999999999999987665543222       4466688875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.07  E-value=1.7e-09  Score=92.29  Aligned_cols=105  Identities=16%  Similarity=0.108  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.+...|..+++.|+|++|+..|.+++...|++..    .           ..+++++|.++++.|++++|+..++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~   66 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY----A-----------PNAHYWLGEAYYAQGKYADAAKAFLAVV   66 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc----c-----------HHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            467889999999999999999999999999887532    0           1178999999999999999999999999


Q ss_pred             hcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           83 KIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ..+|++   +.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus        67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        67 KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            998885   6789999999999999999999999999 666544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.06  E-value=1.5e-09  Score=119.93  Aligned_cols=112  Identities=18%  Similarity=0.157  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|++++.++|....                  +|.++|.++..+|++++|+.++++++
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~------------------~~~~la~~~~~~g~~~eA~~~~~~al  392 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ------------------SYIKRASMNLELGDPDKAEEDFDKAL  392 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456778888888889999999999999888887665                  77788888888888888888888888


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +++|+++.+|+.+|.+++.+|++++|+.+|++++ ..|++......+...+
T Consensus       393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            8888888888888888888888888888888888 6665544333333333

>PRK15331 chaperone protein SicA; Provisional

Probab=99.06  E-value=1.1e-09  Score=97.37  Aligned_cols=116  Identities=14%  Similarity=0.137  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+...|-.+|.+|+|++|...|+-...++|.++.                  .+..+|.|+..+++|++|+..+..|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~------------------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A   97 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD------------------YTMGLAAVCQLKKQFQKACDLYAVA   97 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888999999999999999999999999999876                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~  135 (518)
                      ..++++++...|+.|.|++.+|+.+.|+.+|..++..|.+....+....++..+
T Consensus        98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l  151 (165)
T PRK15331         98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEAL  151 (165)
T ss_pred             HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999997665544444444444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.04  E-value=9.1e-10  Score=107.05  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++...+.|+.++..|++.+|+..|..|++.+|++..                  +++.||.+|+.+|+-..|+.|++++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~------------------aifrRaT~yLAmGksk~al~Dl~rV   98 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ------------------AIFRRATVYLAMGKSKAALQDLSRV   98 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH------------------HHHHHHHHHhhhcCCccchhhHHHH
Confidence            4678889999999999999999999999999999865                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      |++.|+..-|...+|.+++.+|++++|..+|++.+ ..|++..
T Consensus        99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~  141 (504)
T KOG0624|consen   99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL  141 (504)
T ss_pred             HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch
Confidence            99999999999999999999999999999999999 6664443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.04  E-value=6.9e-10  Score=89.33  Aligned_cols=83  Identities=17%  Similarity=0.335  Sum_probs=73.1

Q ss_pred             hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      +|+|+.|+..|++++...|.+..                ...++++|.|++++|+|++|+..+++ ++.+|.++..++.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~----------------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~   64 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPN----------------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLL   64 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHH----------------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChh----------------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHH
Confidence            68999999999999999986311                11788899999999999999999999 89999999999999


Q ss_pred             HHHHHhccChHHHHHHHHHH
Q 035535           96 GKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        96 g~al~~lg~~~~A~~~~~~a  115 (518)
                      |.+++.+|+|++|++.|+++
T Consensus        65 a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999875

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.04  E-value=2.4e-09  Score=99.34  Aligned_cols=104  Identities=18%  Similarity=0.141  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +.....+|..++..|++..|...+++||+.+|++..                  +|.-+|..|.++|+.+.|-+.|++|+
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~------------------a~~~~A~~Yq~~Ge~~~A~e~YrkAl   96 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL------------------AHLVRAHYYQKLGENDLADESYRKAL   96 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHcCChhhHHHHHHHHH
Confidence            456678999999999999999999999999999877                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGS  124 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~  124 (518)
                      +++|++...+.+.|.-++..|+|++|.+.|++|+.+|..+.-
T Consensus        97 sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~  138 (250)
T COG3063          97 SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP  138 (250)
T ss_pred             hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc
Confidence            999999999999999999999999999999999988877653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.01  E-value=3.3e-09  Score=84.64  Aligned_cols=97  Identities=25%  Similarity=0.398  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|..++..|++++|+..+.+++...|.+..                  ++.++|.++...+++++|++.+++++.+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD------------------AYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4678999999999999999999999999887654                  8999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      .|.+..+++.+|.++...|++++|...+.+++ ..|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            99999999999999999999999999999988 443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.00  E-value=1.4e-09  Score=83.81  Aligned_cols=63  Identities=22%  Similarity=0.380  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-ChHHHHHHHHHHH-hcc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN-RYSMALDCFKETL-VDA  119 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg-~~~~A~~~~~~al-~~p  119 (518)
                      +|.++|.+++..|+|++|+..++++++++|+++.+|+++|.++..+| ++++|+++|++++ ++|
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            89999999999999999999999999999999999999999999999 7999999999999 665

...

>PRK12370 invasion protein regulator; Provisional

Probab=98.99  E-value=3.8e-09  Score=115.17  Aligned_cols=90  Identities=13%  Similarity=0.032  Sum_probs=56.0

Q ss_pred             hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHH
Q 035535           15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLC   94 (518)
Q Consensus        15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~   94 (518)
                      ..+++++|+..+++|++++|+++.                  ++..+|.++...|++++|+..+++|++++|+++.+++.
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~  377 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQ------------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYY  377 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            345566666666666666666554                  56666666666666666666666666666666666666


Q ss_pred             HHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           95 KGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        95 ~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +|.++...|++++|+..|++++ .+|.++
T Consensus       378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        378 YGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            6666666666666666666666 555443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.99  E-value=7.2e-10  Score=116.20  Aligned_cols=120  Identities=15%  Similarity=0.244  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ..+.|...||.+--+++++.||.+|.+||.++|+.+-                  +|.-+|.=+....+|+.|...|+.|
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY------------------ayTLlGhE~~~~ee~d~a~~~fr~A  481 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY------------------AYTLLGHESIATEEFDKAMKSFRKA  481 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch------------------hhhhcCChhhhhHHHHhHHHHHHhh
Confidence            4688999999999999999999999999999999876                  8888899999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      |.++|.|..|||-+|.+|+..++++.|.-.|++|+ ..|.+....--+...++++++.+
T Consensus       482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d  540 (638)
T KOG1126|consen  482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD  540 (638)
T ss_pred             hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence            99999999999999999999999999999999999 77766654444555555555444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.99  E-value=3.5e-09  Score=116.70  Aligned_cols=120  Identities=13%  Similarity=0.034  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.++..|......|.+++|...+..+++++|++..                  ++.+++.++.+++++++|+..++++
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~------------------a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE------------------AFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH------------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3677888999999999999999999999999999876                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      +..+|+++.+++.+|.++..+|+|++|+..|++++ ..|+++...-.+...+.+..+.+
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~  205 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW  205 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999 66666665555566665554443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.96  E-value=8.7e-09  Score=117.83  Aligned_cols=112  Identities=10%  Similarity=-0.089  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+.+.|..+.+.|++++|+..|.+++.++|+++.                  ++.|+|.++..+|++++|+..+++|+
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~------------------a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN------------------YQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345667788888888888888888888888888766                  88888888888888888888888888


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +++|+++.+++.+|.++..+|++++|+..|++++ ..|+..........+.
T Consensus       671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~  721 (987)
T PRK09782        671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN  721 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence            8888888888888888888888888888888888 6765544433333333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.95  E-value=6.9e-09  Score=92.55  Aligned_cols=98  Identities=13%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 035535           23 VQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSL  102 (518)
Q Consensus        23 i~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~l  102 (518)
                      ...|+++++++|++                     +.++|.++...|+|++|+..+++++.++|.++.+|+.+|.++..+
T Consensus        13 ~~~~~~al~~~p~~---------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~   71 (144)
T PRK15359         13 EDILKQLLSVDPET---------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML   71 (144)
T ss_pred             HHHHHHHHHcCHHH---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            46789999998873                     457899999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535          103 NRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus       103 g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      |+|++|+..|++++ ..|+++.....+...+...++.++.
T Consensus        72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eA  111 (144)
T PRK15359         72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLA  111 (144)
T ss_pred             hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999 8998888888787777776666543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.92  E-value=2.1e-08  Score=92.31  Aligned_cols=88  Identities=17%  Similarity=0.104  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..+...|++++|+..|.+++...|+...               ...++.++|.++.++|++++|+..+++++
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al   99 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---------------RSYILYNMGIIYASNGEHDKALEYYHQAL   99 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            556788999999999999999999999998776431               01289999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccCh
Q 035535           83 KIESSHFKALLCKGKILLSLNRY  105 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~  105 (518)
                      +++|.+..+++.+|.++..+|+.
T Consensus       100 ~~~p~~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603        100 ELNPKQPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             HhCcccHHHHHHHHHHHHHcCCh
Confidence            99999999999999999998884

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.92  E-value=1.6e-08  Score=101.37  Aligned_cols=96  Identities=13%  Similarity=0.012  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..+...|+|++|+..|.++++++|++..                  ++.|+|.++...|++++|+++++++
T Consensus        97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~------------------a~~~lg~~l~~~g~~~eA~~~~~~a  158 (296)
T PRK11189         97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY------------------AYLNRGIALYYGGRYELAQDDLLAF  158 (296)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4577889999999999999999999999999999876                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++++|+++...+.. ..+...+++++|+..|.+++
T Consensus       159 l~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        159 YQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHH
Confidence            99988765211111 12233455566666654443

>PRK12370 invasion protein regulator; Provisional

Probab=98.91  E-value=1.5e-08  Score=110.47  Aligned_cols=105  Identities=15%  Similarity=0.002  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 035535           19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKI   98 (518)
Q Consensus        19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~a   98 (518)
                      +++|+..|++|++++|+++.                  +++++|.++..+|++++|+..++++++++|.++.+++.++.+
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~------------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISAD------------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            67899999999999999877                  899999999999999999999999999999999888888888


Q ss_pred             HHhccChHHHHHHHHHHH-hc-cccCCcHHHHHHHHHHHHHHHHH
Q 035535           99 LLSLNRYSMALDCFKETL-VD-AQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        99 l~~lg~~~~A~~~~~~al-~~-p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      ++..|++++|+..+++++ .. |+++.....+...+...++.++.
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA  460 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA  460 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999998 43 55554445555555555554433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.90  E-value=2.2e-08  Score=91.66  Aligned_cols=99  Identities=17%  Similarity=0.060  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++.+.|+...               ...++.|+|.++..+|++++|+..+++|+
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD---------------RSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            567788999999999999999999999998765321               11289999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHH-------hccChHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILL-------SLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~-------~lg~~~~A~~~~~~al  116 (518)
                      .++|.+..++..+|.++.       .+|++++|+..+.+++
T Consensus       100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            999999999999999999       8888876655555543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.2e-08  Score=101.14  Aligned_cols=94  Identities=17%  Similarity=0.252  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .|.-.|-++...++-..|++.|++|++++|.+..                  +|+.+|++|--++...=|+-++++|+++
T Consensus       366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR------------------AWYGLGQaYeim~Mh~YaLyYfqkA~~~  427 (559)
T KOG1155|consen  366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR------------------AWYGLGQAYEIMKMHFYALYYFQKALEL  427 (559)
T ss_pred             HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH------------------HHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence            4444555555555555555555555555555443                  5555555555555555555555555555


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .|++...|..+|.||..+++.++|+.||++++
T Consensus       428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai  459 (559)
T KOG1155|consen  428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAI  459 (559)
T ss_pred             CCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            55555555555555555555555555555555

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.87  E-value=4e-08  Score=92.99  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++..+|++++|++.+++++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~al   92 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL------------------AYLALALYYQQLGELEKAEDSFRRAL   92 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            567788999999999999999999999999888765                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDA  119 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p  119 (518)
                      +.+|.+..+++.+|.++...|++++|++.|++++..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  129 (234)
T TIGR02521        93 TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP  129 (234)
T ss_pred             hhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.6e-08  Score=102.06  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=108.1

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      .||-+--+++.++|+.+|++||.++|....                  +|.-.|.=|+.+++-..|++.+++|++++|.+
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~------------------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D  397 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLS------------------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRD  397 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhH------------------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence            477788899999999999999999999877                  99999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           89 FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        89 ~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      .+|||-+|++|..++-+.=|+-+|++|+ ..|.|+-.+..+.+...++.++++.
T Consensus       398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA  451 (559)
T KOG1155|consen  398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA  451 (559)
T ss_pred             HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence            9999999999999999999999999999 8999998889999988888887765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.86  E-value=8.5e-09  Score=78.47  Aligned_cols=64  Identities=31%  Similarity=0.422  Sum_probs=58.8

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           59 SNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        59 ~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++++ ..|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3678999999999999999999999999999999999999999999999999999999 888654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.84  E-value=4.5e-08  Score=94.58  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+...|..++..|+|++|+..|++++...|.++.               ...+++++|.++++.|++++|+..++++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------------~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY---------------AEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999987653               0117899999999999999999999999


Q ss_pred             HhcCCCchH---HHHHHHHHHHhc--------cChHHHHHHHHHHH-hccccCCc
Q 035535           82 LKIESSHFK---ALLCKGKILLSL--------NRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        82 l~l~p~~~k---a~~~~g~al~~l--------g~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++.+|+++.   +++.+|.+++..        |++++|++.|++++ ..|+++..
T Consensus        97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  151 (235)
T TIGR03302        97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA  151 (235)
T ss_pred             HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence            999998876   799999999987        89999999999999 77765543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.84  E-value=3.1e-08  Score=83.86  Aligned_cols=97  Identities=23%  Similarity=0.278  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ..++-.+|..+-..|+.+.|++.|.++|.+.|..++                  +|.|||+++.-.|+.++|++|+++|+
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS------------------ayNNRAQa~RLq~~~e~ALdDLn~Al  104 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERAS------------------AYNNRAQALRLQGDDEEALDDLNKAL  104 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH------------------hhccHHHHHHHcCChHHHHHHHHHHH
Confidence            345667899999999999999999999999999988                  99999999999999999999999999


Q ss_pred             hcCCCc----hHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535           83 KIESSH----FKALLCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        83 ~l~p~~----~ka~~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                      ++..+.    -.+|..+|.+|..+|+-+.|..+|..+..
T Consensus       105 eLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  105 ELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence            996543    35789999999999999999999999883

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.83  E-value=5.9e-08  Score=91.85  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++...|++++|+..+++++
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~~~g~~~~A~~~~~~~~  126 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD------------------VLNNYGTFLCQQGKYEQAMQQFEQAI  126 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            456677899999999999999999999999887654                  67777777777777777777777777


Q ss_pred             hcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           83 KIE--SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ...  |.....++.+|.++...|++++|...|.+++ ..|+++
T Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  169 (234)
T TIGR02521       127 EDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP  169 (234)
T ss_pred             hccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence            653  4455667777777777777777777777777 555433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.81  E-value=1.5e-09  Score=105.85  Aligned_cols=99  Identities=20%  Similarity=0.264  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+...+.++..++..|++++||+.|+.||.++|..+.                  +|.+|+.+++++++...|+.||+.|
T Consensus       113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~------------------l~~kr~sv~lkl~kp~~airD~d~A  174 (377)
T KOG1308|consen  113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI------------------LYAKRASVFLKLKKPNAAIRDCDFA  174 (377)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh------------------hcccccceeeeccCCchhhhhhhhh
Confidence            4567788899999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                      ++++|+..+.|-.+|.+...+|+|++|..+|..+...
T Consensus       175 ~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  175 IEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             hccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999943

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.80  E-value=4.8e-08  Score=91.94  Aligned_cols=106  Identities=15%  Similarity=0.120  Sum_probs=91.8

Q ss_pred             hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      .++.++++..+.+++..+|++..                  +|.++|.++..+|++++|+..+++|++++|+++..++.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~------------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l  113 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSE------------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL  113 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            56779999999999999999987                  999999999999999999999999999999999999999


Q ss_pred             HHHH-HhccC--hHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           96 GKIL-LSLNR--YSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        96 g~al-~~lg~--~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      |.++ ...|+  +++|.+.+++++ .+|+++.....+.......++.+
T Consensus       114 A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~  161 (198)
T PRK10370        114 ATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA  161 (198)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Confidence            9986 67787  599999999999 88888776555555544444333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.80  E-value=4.6e-08  Score=111.99  Aligned_cols=104  Identities=12%  Similarity=0.105  Sum_probs=86.1

Q ss_pred             hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 035535           17 EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKG   96 (518)
Q Consensus        17 g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g   96 (518)
                      |++++|+..|.+++.++|+ +.                  ++.++|.++.++|++++|+..++++++++|+++.+++.+|
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~------------------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG  650 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-AN------------------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG  650 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5555555555555555553 32                  8999999999999999999999999999999999999999


Q ss_pred             HHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           97 KILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        97 ~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      .++...|++++|+..|++++ ..|+++.....+...+...++.+
T Consensus       651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999 88888877666666666655544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.79  E-value=4.8e-08  Score=108.53  Aligned_cols=60  Identities=18%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++.++|.++.+.|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++
T Consensus       286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA  345 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            444555555555555555555555555555555555555555555555555555555544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=5e-08  Score=99.11  Aligned_cols=78  Identities=14%  Similarity=0.224  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      +|+.||+.++-+++|++|+.|++++++++|.+.-+|..++.++++.+++++++..|+.+. ..|.-|+...-..+.+..
T Consensus       396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD  474 (606)
T KOG0547|consen  396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD  474 (606)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence            455555555555555555555555555555555555555555555555555555555555 444444433333344433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.79  E-value=2.2e-08  Score=105.30  Aligned_cols=100  Identities=21%  Similarity=0.249  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      .+|...|..+.++++++.|.-.|++|+.++|.+..                  ..+..|..+.++|+.++|+..+++|+.
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv------------------i~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV------------------ILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccchh------------------HHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            34555555555555555555555555555555443                  444555555555555555555555555


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      +||.++-.-|.+|.+++.+++|++|+..+++.- ..|++
T Consensus       552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e  590 (638)
T KOG1126|consen  552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE  590 (638)
T ss_pred             cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence            555555555555555555555555555555554 44433

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]

Probab=98.78  E-value=7.7e-09  Score=115.73  Aligned_cols=60  Identities=37%  Similarity=0.577  Sum_probs=45.5

Q ss_pred             ccccccCCCCCCceEE---eeCC-EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCC
Q 035535          315 LASFINHSCSPNARRV---HVGD-YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKF  382 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~---~~~~-~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~  382 (518)
                      .+.+|||||.|||..-   +.|+ +|+|.|.|+|.+|||||..|-.+....        ..-..|.-+.|+.
T Consensus       939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~--------kipClCgap~Crg 1002 (1005)
T KOG1080|consen  939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDD--------KIPCLCGAPNCRG 1002 (1005)
T ss_pred             hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccccc--------ccccccCCCcccc
Confidence            4789999999999743   3343 899999999999999999998765431        2334555577763

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=9e-08  Score=92.91  Aligned_cols=115  Identities=13%  Similarity=0.052  Sum_probs=100.2

Q ss_pred             CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHH
Q 035535            1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR---DFDNALRD   77 (518)
Q Consensus         1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg---~~~~Al~~   77 (518)
                      ++++.|...|..++..|++..|...|.+|+++.|+++.                  .+.-.|.+++...   .-.++...
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~------------------~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE------------------ILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhcCCcccHHHHHH
Confidence            35788999999999999999999999999999999987                  7888888887764   46789999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           78 CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      +++|+.+||++..+++.+|..++..|+|.+|...++..+ ..|.+......++..+.
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia  272 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA  272 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            999999999999999999999999999999999999999 67665555444544443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.77  E-value=7.9e-08  Score=91.13  Aligned_cols=120  Identities=17%  Similarity=0.130  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +-+..+|..++..|+|.+|+..++++..+.|++..                  +|.-+|.+|.++|++++|-..+.++++
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~------------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~  162 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE------------------AWNLLGAALDQLGRFDEARRAYRQALE  162 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh------------------hhhHHHHHHHHccChhHHHHHHHHHHH
Confidence            34556899999999999999999999999999988                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccc-cCCcHHHHHHHHHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQ-ASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~-~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      +.|+.+..+.++|..|+-.|+++.|...+..+...|. ++...+++..+.....++.+.
T Consensus       163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence            9999999999999999999999999999999996554 444456666666555555544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.77  E-value=1.9e-08  Score=99.98  Aligned_cols=120  Identities=17%  Similarity=0.131  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +.-|...|..+.+.|++++|+..|++|++++|++..                  +..+++.++...|+++++.+.+....
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------------------~~~~l~~~li~~~~~~~~~~~l~~~~  207 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------------------ARNALAWLLIDMGDYDEAREALKRLL  207 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------------------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            455777888888888888999999999988888766                  77778888888888888777777777


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      +..|+++..+..+|.++..+|++++|+..|++++ ..|+|+.....+..++...++.++
T Consensus       208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~  266 (280)
T PF13429_consen  208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE  266 (280)
T ss_dssp             HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred             HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence            7777788888888888888888888888888888 677777776777777766655543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.77  E-value=1.8e-08  Score=76.62  Aligned_cols=64  Identities=17%  Similarity=0.212  Sum_probs=59.4

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS   87 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~   87 (518)
                      .+|..+++.|+|++|+..|++++...|.++.                  +++.+|.++..+|++++|+..++++++++|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE------------------AWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH------------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            5799999999999999999999999999877                  9999999999999999999999999999998


Q ss_pred             ch
Q 035535           88 HF   89 (518)
Q Consensus        88 ~~   89 (518)
                      ++
T Consensus        64 ~p   65 (65)
T PF13432_consen   64 NP   65 (65)
T ss_dssp             -H
T ss_pred             CC
Confidence            75

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.75  E-value=1e-07  Score=88.70  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...|..++..+.+.|+.+.|-+.|++|+.++|++.+                  ++.|.|.-+...|+|++|...+++|+
T Consensus        69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd------------------VLNNYG~FLC~qg~~~eA~q~F~~Al  130 (250)
T COG3063          69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD------------------VLNNYGAFLCAQGRPEEAMQQFERAL  130 (250)
T ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc------------------hhhhhhHHHHhCCChHHHHHHHHHHH
Confidence            456777888999999999999999999999999988                  99999999999999999999999998


Q ss_pred             hcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHH
Q 035535           83 KIE--SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVN  129 (518)
Q Consensus        83 ~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~  129 (518)
                      .--  |....+|-++|.|-+..|+++.|..+|++++ .+|+++.....+.
T Consensus       131 ~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a  180 (250)
T COG3063         131 ADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA  180 (250)
T ss_pred             hCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence            763  5667899999999999999999999999999 8988887644443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.74  E-value=1e-07  Score=105.15  Aligned_cols=98  Identities=8%  Similarity=-0.023  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535            1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ   80 (518)
Q Consensus         1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~   80 (518)
                      ++++.+...++.+++.+++++|+..+++++..+|+++.                  +++++|.++.++|+|++|+..|++
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~------------------~~~~~a~~l~~~g~~~~A~~~y~~  179 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR------------------EILLEAKSWDEIGQSEQADACFER  179 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH------------------HHHHHHHHHHHhcchHHHHHHHHH
Confidence            35778899999999999999999999999999999987                  999999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++..+|++++++..+|.++..+|+.++|...|++++
T Consensus       180 ~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        180 LSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=2.6e-08  Score=103.19  Aligned_cols=97  Identities=12%  Similarity=0.164  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      -...+|..|+-.|+|+.|+++|+.||...|++..                  +|..+|.++..-.+..+|+..|.+|+++
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~------------------lWNRLGAtLAN~~~s~EAIsAY~rALqL  493 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL------------------LWNRLGATLANGNRSEEAISAYNRALQL  493 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH------------------HHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence            3445789999999999999999999999999876                  9999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      .|.++.++|++|.++..+|.|.+|..+|-.|| ..+
T Consensus       494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~  529 (579)
T KOG1125|consen  494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR  529 (579)
T ss_pred             CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999 443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.73  E-value=7.6e-08  Score=106.95  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=96.6

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHh
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDN----ALRDCEQALK   83 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~----Al~~~~~al~   83 (518)
                      ..|..++..|++++|+..|.+++...|+++.                  ++.++|.++..+|++++    |+..++++++
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~------------------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALARGLDGAA------------------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            3467778888899999999998888887765                  89999999999999986    8999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      ++|+++.++..+|.++...|++++|+..|++++ ..|+++.....+...+...++.+
T Consensus       279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~  335 (656)
T PRK15174        279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT  335 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999999999999 88877765555555554444433

>PLN02789 farnesyltranstransferase

Probab=98.72  E-value=1.5e-07  Score=94.88  Aligned_cols=105  Identities=11%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHH
Q 035535            3 MQQLRSKATELLLRE-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF--DNALRDCE   79 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~--~~Al~~~~   79 (518)
                      ...|..+|..+...| ++++|+..+++++..+|.+..                  +|.+|+.++.+++++  ++++..++
T Consensus        71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq------------------aW~~R~~~l~~l~~~~~~~el~~~~  132 (320)
T PLN02789         71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ------------------IWHHRRWLAEKLGPDAANKELEFTR  132 (320)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH------------------HhHHHHHHHHHcCchhhHHHHHHHH
Confidence            345556666666655 456666666666666666554                  677777666666653  56666666


Q ss_pred             HHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           80 QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        80 ~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      +++++||.|..+|..+|.++..+|+|++|++++.+++ .+|.+...+
T Consensus       133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW  179 (320)
T PLN02789        133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW  179 (320)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence            7777777777777777777777777777777777777 555554443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.68  E-value=9.9e-08  Score=83.64  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc
Q 035535           24 QVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN  103 (518)
Q Consensus        24 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg  103 (518)
                      +.|.+++...|++..                  +..++|.+++..|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus         4 ~~~~~~l~~~p~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~   65 (135)
T TIGR02552         4 ATLKDLLGLDSEQLE------------------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK   65 (135)
T ss_pred             hhHHHHHcCChhhHH------------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            468899999888765                  88999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535          104 RYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus       104 ~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      ++++|+..|++++ ..|.++.....+.......++.
T Consensus        66 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~  101 (135)
T TIGR02552        66 EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP  101 (135)
T ss_pred             HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence            9999999999999 7776666555555555444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.68  E-value=2.7e-07  Score=80.60  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      .+.+.+.|...++.|+|.+|++.++......|...-.               ..+.+.++.+|++.++|++|+..+++-+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya---------------~qAqL~l~yayy~~~~y~~A~a~~~rFi   74 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA---------------EQAQLDLAYAYYKQGDYEEAIAAYDRFI   74 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            5788999999999999999999999999988876541               1288899999999999999999999999


Q ss_pred             hcCCCchH---HHHHHHHHHHhccC---------------hHHHHHHHHHHH-hcccc
Q 035535           83 KIESSHFK---ALLCKGKILLSLNR---------------YSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~~k---a~~~~g~al~~lg~---------------~~~A~~~~~~al-~~p~~  121 (518)
                      +++|+|++   ++|.+|.+++....               ..+|...|++.+ ..|+.
T Consensus        75 rLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   75 RLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            99999865   89999999999877               778888888888 66643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.66  E-value=3e-07  Score=90.10  Aligned_cols=103  Identities=11%  Similarity=0.062  Sum_probs=89.3

Q ss_pred             HHHHHHHHHH-HhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            4 QQLRSKATEL-LLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         4 ~~l~~~Gn~~-~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ..+...+..+ ++.|+|++|+..|++.+...|+...    .++           +++.+|.+|+..|+|++|+..+.+++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~----a~~-----------A~y~LG~~y~~~g~~~~A~~~f~~vv  207 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY----QPN-----------ANYWLGQLNYNKGKKDDAAYYFASVV  207 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc----hHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566677776 6679999999999999999998742    111           89999999999999999999999999


Q ss_pred             hcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESS---HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      +..|+   .+.+++.+|.++..+|++++|...|++++ ..|+.
T Consensus       208 ~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        208 KNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            98877   47799999999999999999999999999 66643

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]

Probab=98.66  E-value=1.7e-08  Score=98.42  Aligned_cols=64  Identities=39%  Similarity=0.665  Sum_probs=53.3

Q ss_pred             Eeecc-cccccCCCCCCceEEeeC-CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCCC
Q 035535          311 GLWAL-ASFINHSCSPNARRVHVG-DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFE  383 (518)
Q Consensus       311 gl~~~-~s~~NHsC~PN~~~~~~~-~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~~  383 (518)
                      -||.. ++++||+|.|||.+.-.| +++.|+++|||++|||||-=|++.+.+.         -.-.|.|.-|...
T Consensus       191 qLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~fFG~---------~N~~CeC~TCER~  256 (453)
T KOG2589|consen  191 QLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGFFGE---------NNEECECVTCERR  256 (453)
T ss_pred             hheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccccCC---------CCceeEEeecccc
Confidence            46665 589999999999988877 8999999999999999999999876442         3357999888765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=2.2e-07  Score=96.19  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +.+.|..+|..+.|.+|+.+|..++...+....  ...         -....+.|+|.++.+++.|++|+..+++||.+.
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~--e~~---------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLN--EKI---------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccc--ccc---------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            455666666677777777777777644333211  000         012268999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG  130 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~  130 (518)
                      |.++.++-..|.+|..+|+++.|++.|.++| +.|++.-..+-+..
T Consensus       486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            9999999999999999999999999999999 88765433333333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.61  E-value=2.5e-07  Score=98.80  Aligned_cols=102  Identities=16%  Similarity=0.234  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH--HHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR--DCEQ   80 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~--~~~~   80 (518)
                      +..++..|..+..+|++.+|.+.|..|+.++|+++.                  ....+|.++++.|+..-|..  ....
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~------------------s~~Ala~~lle~G~~~la~~~~~L~d  745 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP------------------SMTALAELLLELGSPRLAEKRSLLSD  745 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH------------------HHHHHHHHHHHhCCcchHHHHHHHHH
Confidence            345688899999999999999999999999999987                  88899999999999888888  9999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      |+++||.++++||.+|.++..+|+.++|.+||+.|+ +.+.+|
T Consensus       746 alr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  746 ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            999999999999999999999999999999999999 766655

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.60  E-value=3.7e-07  Score=103.44  Aligned_cols=111  Identities=14%  Similarity=0.107  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..+...|++++|+..|++++.++|.++.                  ++.+++.++...|++++|+..+++++
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~la~~l~~~g~~~eA~~~l~~~l  110 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD------------------YQRGLILTLADAGQYDEALVKAKQLV  110 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345788999999999999999999999999999876                  88899999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +.+|+++. ++.+|.++...|++++|+..|++++ ..|+++.....+..++
T Consensus       111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l  160 (765)
T PRK10049        111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL  160 (765)
T ss_pred             HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999 9999999999999999999999999 8887765544444444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.59  E-value=1.4e-07  Score=72.23  Aligned_cols=67  Identities=15%  Similarity=0.134  Sum_probs=50.5

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHH
Q 035535           13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKAL   92 (518)
Q Consensus        13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~   92 (518)
                      +++.|+|++|+..|++++...|++..                  +++++|.|+++.|++++|...+++++..+|+++..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE------------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH------------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            45678888888888888888887766                  777888888888888888888888888888776666


Q ss_pred             HHHHH
Q 035535           93 LCKGK   97 (518)
Q Consensus        93 ~~~g~   97 (518)
                      .-++.
T Consensus        63 ~l~a~   67 (68)
T PF14559_consen   63 QLLAQ   67 (68)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            55544

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.59  E-value=2.4e-07  Score=72.08  Aligned_cols=65  Identities=23%  Similarity=0.328  Sum_probs=38.6

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535           11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK   90 (518)
Q Consensus        11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k   90 (518)
                      +.+++.++|++|+..+++++.++|.++.                  ++..+|.++.++|+|.+|+.+++++++.+|+++.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPE------------------LWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccch------------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            4455566666666666666666665554                  5666666666666666666666666666665555


Q ss_pred             HHH
Q 035535           91 ALL   93 (518)
Q Consensus        91 a~~   93 (518)
                      +..
T Consensus        65 ~~~   67 (73)
T PF13371_consen   65 ARA   67 (73)
T ss_pred             HHH
Confidence            443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.58  E-value=8.1e-07  Score=85.75  Aligned_cols=105  Identities=14%  Similarity=0.133  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--------cCHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL--------RDFDNAL   75 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l--------g~~~~Al   75 (518)
                      ..+...|..+++.|+|++|+..|.++++..|+++..               ..+++++|.+++..        |++++|+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~  135 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA---------------DYAYYLRGLSNYNQIDRVDRDQTAAREAF  135 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch---------------HHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence            467889999999999999999999999999987641               11688899999876        8999999


Q ss_pred             HHHHHHHhcCCCchHHH-----------------HHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           76 RDCEQALKIESSHFKAL-----------------LCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        76 ~~~~~al~l~p~~~ka~-----------------~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +.+++++..+|++..++                 +.+|..++..|++++|+..|++++ ..|+.|.
T Consensus       136 ~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (235)
T TIGR03302       136 EAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA  201 (235)
T ss_pred             HHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence            99999999999986442                 467888999999999999999999 6665543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.58  E-value=5e-07  Score=103.05  Aligned_cols=105  Identities=21%  Similarity=0.279  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++..+|.+..                  ++..+|.+++..|++++|+..+++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~  186 (899)
T TIGR02917       125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY------------------AKLGLAQLALAENRFDEARALIDEVL  186 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------------------hHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456778999999999999999999999999998766                  88899999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      +.+|.+..+++.+|.++...|++++|+..|++++ ..|.++...
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  230 (899)
T TIGR02917       187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVL  230 (899)
T ss_pred             HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence            9999999999999999999999999999999999 777655443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.56  E-value=1.4e-07  Score=96.46  Aligned_cols=102  Identities=26%  Similarity=0.313  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL---RDFDNALRDC   78 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l---g~~~~Al~~~   78 (518)
                      .++..+.+||..|..+.+..||..|.+++...|....                  +|.|||.++++.   |+-..|+.||
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~------------------~l~nraa~lmkRkW~~d~~~AlrDc  434 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIY------------------LLENRAAALMKRKWRGDSYLALRDC  434 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhH------------------HHHhHHHHHHhhhccccHHHHHHhH
Confidence            5788899999999999999999999999999998776                  999999999986   5788999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        79 ~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      ..|+++||...||+|+++.++..++++.+|+++...+. ..|.+
T Consensus       435 h~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  435 HVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence            99999999999999999999999999999999988777 55533

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.56  E-value=5.5e-07  Score=102.70  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +...|..+...|++++|+..|++++...|+++.                  ++.+++.++...|+ .+|+..+++++++.
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------------~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV------------------VLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            344455555555555555555555555554433                  55555555555555 55666666666666


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      |+++..+..+|.++..+|++++|+..|++++ ..|.++.....+...+
T Consensus       834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  881 (899)
T TIGR02917       834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL  881 (899)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            6665556666666666666666666666666 4444443333333333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.55  E-value=2.3e-06  Score=80.88  Aligned_cols=121  Identities=19%  Similarity=0.194  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+...|..++..|+|.+|+..|++.+...|.....    +           .+.+.+|.++++.|+|.+|+..+++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a----~-----------~A~l~la~a~y~~~~y~~A~~~~~~f   68 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA----P-----------QAQLMLAYAYYKQGDYEEAIAAYERF   68 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH----H-----------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH----H-----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999886541    1           28899999999999999999999999


Q ss_pred             HhcCCCch---HHHHHHHHHHHhcc-----------ChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           82 LKIESSHF---KALLCKGKILLSLN-----------RYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        82 l~l~p~~~---ka~~~~g~al~~lg-----------~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      ++..|+++   .++|.+|.+++.+.           ...+|+..|+..+ ..|+.+ -.......+..++..
T Consensus        69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-y~~~A~~~l~~l~~~  139 (203)
T PF13525_consen   69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE-YAEEAKKRLAELRNR  139 (203)
T ss_dssp             HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHH
T ss_pred             HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch-HHHHHHHHHHHHHHH
Confidence            99999875   58999999987764           3358999999999 777544 334454545454443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.55  E-value=1.6e-06  Score=84.31  Aligned_cols=121  Identities=13%  Similarity=0.069  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+...|..++..|+|++|+..|++.+...|..+.               ...+.+++|.+++++++|++|+..+++.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~---------------a~~a~l~la~ayy~~~~y~~A~~~~e~f   95 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY---------------SQQVQLDLIYAYYKNADLPLAQAAIDRF   95 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3567888999999999999999999999999987643               1126789999999999999999999999


Q ss_pred             HhcCCCch---HHHHHHHHHHHhccC------------------hHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           82 LKIESSHF---KALLCKGKILLSLNR------------------YSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        82 l~l~p~~~---ka~~~~g~al~~lg~------------------~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      ++.+|+++   .++|.+|.++..+++                  ..+|++.|++.+ ..|+ +.........+..++..
T Consensus        96 i~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~ya~~A~~rl~~l~~~  173 (243)
T PRK10866         96 IRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQYTTDATKRLVFLKDR  173 (243)
T ss_pred             HHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHH
Confidence            99999874   579999998766541                  257889999999 7774 33334444444444433

>PLN02789 farnesyltranstransferase

Probab=98.53  E-value=1e-06  Score=88.98  Aligned_cols=114  Identities=11%  Similarity=0.103  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHhhhcH--HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEW--KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE   79 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~--~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~   79 (518)
                      +.+.|..+|..+.+.|++  ++++..+.++|+.+|.+..                  +|.+|+-++..+|+|++|+++++
T Consensus       105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~------------------AW~~R~w~l~~l~~~~eeL~~~~  166 (320)
T PLN02789        105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH------------------AWSHRQWVLRTLGGWEDELEYCH  166 (320)
T ss_pred             chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHhhhHHHHHHHHH
Confidence            345688888888777764  7889999999999999877                  99999999999999999999999


Q ss_pred             HHHhcCCCchHHHHHHHHHHHhc---cCh----HHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           80 QALKIESSHFKALLCKGKILLSL---NRY----SMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        80 ~al~l~p~~~ka~~~~g~al~~l---g~~----~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      ++|++||.|..+|+.++.++..+   +.+    ++++++..+++ ..|++...+..+..++.
T Consensus       167 ~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~  228 (320)
T PLN02789        167 QLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK  228 (320)
T ss_pred             HHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence            99999999999999999999876   334    47888888999 89988887766666664

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=7.8e-08  Score=95.98  Aligned_cols=94  Identities=23%  Similarity=0.375  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+++.+.+||.+++..+|.+|+..|+.||+.+|+++.                  .|.|||.+++.+++|++|+-++++.
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~------------------yy~nRAa~~m~~~~~~~a~~dar~~  109 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNAS------------------YYSNRAATLMMLGRFEEALGDARQS  109 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchh------------------hhchhHHHHHHHHhHhhcccchhhh
Confidence            4788999999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFK  113 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~  113 (518)
                      ++++|...+++.+.++++..+++..+|.+.|+
T Consensus       110 ~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~  141 (486)
T KOG0550|consen  110 VRLKDGFSKGQLREGQCHLALSDLIEAEEKLK  141 (486)
T ss_pred             eecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence            99999999999999999999999999988877

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.53  E-value=1.5e-06  Score=90.36  Aligned_cols=63  Identities=19%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      .+.++|.++.+.|++++|+..++++++.+|++..+++.+|.++...|++++|++.|++++ ..|
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            566777778888888888888888888888888888888888888888888888888877 444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.51  E-value=1.3e-06  Score=90.71  Aligned_cols=96  Identities=11%  Similarity=0.052  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      ...|..+++.|++++|+..|.++++..|+...                  ++..+|.++.+.|++++|++.++++++.+|
T Consensus       184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        184 CELAQQALARGDLDAARALLKKALAADPQCVR------------------ASILLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            44556666666777777777777666665443                  788999999999999999999999999998


Q ss_pred             Cc-hHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           87 SH-FKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        87 ~~-~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      .+ ..++..++.+|...|++++|+..+++++ ..|+
T Consensus       246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            77 4578899999999999999999999999 6664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.50  E-value=1.1e-06  Score=104.14  Aligned_cols=102  Identities=10%  Similarity=0.007  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..+.+.|++++|+..|++++...|+++.                  ++.+++.++...|++++|++.++++++
T Consensus       604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~------------------a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD------------------ARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            45667899999999999999999999999999876                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      .+|+++.++..+|.++..+|++++|++.|++++ ..|+++.
T Consensus       666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            999999999999999999999999999999999 6655543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.49  E-value=1.1e-06  Score=99.62  Aligned_cols=102  Identities=9%  Similarity=-0.041  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +.+..+|..+...|++++|++.+++++...|.++.                  ++.++|.++...|++++|++.++++++
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~------------------l~~~lA~l~~~~g~~~~A~~~l~~al~  421 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG------------------LRIDYASVLQARGWPRAAENELKKAEV  421 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            34567899999999999999999999999999876                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ++|++..+++.+|.++..+|+|++|...+++++ ..|+++.
T Consensus       422 l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        422 LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999 7876663

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.49  E-value=2e-06  Score=93.39  Aligned_cols=99  Identities=17%  Similarity=0.266  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh---------------
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR---------------   67 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~---------------   67 (518)
                      ++.+..++|.+|.+|++++|...+.++|..+|.++.                  +|+.+|.+|-.               
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~------------------ay~tL~~IyEqrGd~eK~l~~~llAA  200 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI------------------AYYTLGEIYEQRGDIEKALNFWLLAA  200 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh------------------hHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            677889999999999999999999999999999876                  44444554444               


Q ss_pred             -------------------ccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           68 -------------------LRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        68 -------------------lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                                         +|++.+|.-.+.+||+.+|.+.+..++++..|..+|++..|+..|.+++ ..|
T Consensus       201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence                               4455555555666666666666666666666666666666666666655 444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.48  E-value=8.7e-07  Score=104.94  Aligned_cols=111  Identities=17%  Similarity=0.159  Sum_probs=80.3

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS   87 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~   87 (518)
                      .+|..++..|++++|+..|++++..+|+++.                  ++.++|.+++++|++++|+..++++++++|+
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~------------------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~  335 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE------------------ALGALGQAYSQQGDRARAVAQFEKALALDPH  335 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4588889999999999999999999998766                  7778888888888888888888888887776


Q ss_pred             chH--------------HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535           88 HFK--------------ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK  136 (518)
Q Consensus        88 ~~k--------------a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~  136 (518)
                      +..              .+..+|.++...|++++|+..|++++ ..|+++.....+..++...+
T Consensus       336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g  399 (1157)
T PRK11447        336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK  399 (1157)
T ss_pred             ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            542              12344667777777777777777777 66655444334444444333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.47  E-value=1.3e-06  Score=89.63  Aligned_cols=60  Identities=20%  Similarity=0.144  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHhccChHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKA---LLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka---~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +++|+|.+|+++|+|++|+..|++||+++|++..+   ||++|.+|..+|++++|+++|++|+
T Consensus        77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56666666666666666666666666666665533   6666666666666666666666666

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.46  E-value=4.8e-07  Score=70.32  Aligned_cols=61  Identities=23%  Similarity=0.401  Sum_probs=56.9

Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           62 AEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        62 a~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ..+|++.++|++|++.+++++.++|+++..|+.+|.++..+|+|++|+++|++++ ..|+++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            4678999999999999999999999999999999999999999999999999999 777443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.45  E-value=4.9e-07  Score=92.79  Aligned_cols=58  Identities=14%  Similarity=0.091  Sum_probs=46.7

Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc---HHHHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS---LETVNGFLEKSKKLEY  140 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~---~~~l~~~l~~~~~~~~  140 (518)
                      ..+|+++.+|+++|.+|+.+|+|++|+.+|++++ +.|++...   +.++.-.+..+.+.++
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dE  130 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKK  130 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence            3689999999999999999999999999999999 88877643   4555555555555443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.44  E-value=2.3e-06  Score=76.32  Aligned_cols=94  Identities=17%  Similarity=0.114  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      ....|..++..|+|++|+..|.+++...|+..               +..++.+++|.+++..|+|++|+..++. +.-.
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~---------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~  114 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPE---------------LKPLARLRLARILLQQGQYDEALATLQQ-IPDE  114 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence            33455556666666666666666665442221               1112555566666666666666665544 2223


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      +-.+.++..+|.+|...|++++|+..|++|
T Consensus       115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  115 AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            333445555666666666666666666555

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.44  E-value=3.4e-06  Score=72.31  Aligned_cols=98  Identities=22%  Similarity=0.126  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +.+.+.|..+-..|+.++|+..|++++........               ..-++.++|.++..+|++++|+..+++++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~---------------~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD---------------RRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45788899999999999999999999986543321               112889999999999999999999999999


Q ss_pred             cCCC---chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 IESS---HFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      -.|+   +......++.++..+|++++|+..+-.++
T Consensus        67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8887   77888889999999999999999998887

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.43  E-value=1.9e-06  Score=82.80  Aligned_cols=104  Identities=18%  Similarity=0.151  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +.+.+.+-.+++.|+|.+|.+.|..-|...|+...    +++           +++-+|++++.+|+|+.|...+..+.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~----~~n-----------A~yWLGe~~y~qg~y~~Aa~~f~~~~k  206 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY----TPN-----------AYYWLGESLYAQGDYEDAAYIFARVVK  206 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc----cch-----------hHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            45788999999999999999999999999998764    222           899999999999999999999999999


Q ss_pred             cCCCch---HHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           84 IESSHF---KALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        84 l~p~~~---ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      -.|+++   .+++.+|.++..+|+.++|...|++++ ..|+.+
T Consensus       207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            888764   579999999999999999999999999 776544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.43  E-value=3.5e-06  Score=82.54  Aligned_cols=101  Identities=14%  Similarity=0.162  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .++.+...++..|++..||+..++.|++.|.+++                  ++-.||.||...|+...|+.|...|-++
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~------------------l~~~Rakc~i~~~e~k~AI~Dlk~askL  218 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS------------------LRQARAKCYIAEGEPKKAIHDLKQASKL  218 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH------------------HHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            4566777788999999999999999999999987                  8999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ..++..++|..+..++..|+.+.++...+++| ++|++..
T Consensus       219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624|consen  219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence            99999999999999999999999999999999 8887654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.42  E-value=9.1e-07  Score=81.48  Aligned_cols=103  Identities=16%  Similarity=0.096  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+.-+.++|+.+=..|-+.-|.--|++++.+.|..++                  ++.-+|.-+..-|+|+.|.+.++.+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~------------------vfNyLG~Yl~~a~~fdaa~eaFds~  125 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE------------------VFNYLGIYLTQAGNFDAAYEAFDSV  125 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH------------------HHHHHHHHHHhcccchHHHHHhhhH
Confidence            4667788899988999999999999999999999887                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +++||.+--++.++|.+++--|+|.-|.+.|.+.- .+|+||
T Consensus       126 ~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999999988 778776

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.38  E-value=4.7e-07  Score=91.11  Aligned_cols=113  Identities=15%  Similarity=0.139  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +.++.++||..|..|++++|.+.|.+||.-+.....                  +++|.|..+-++|+.++|++.+-+.-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e------------------alfniglt~e~~~~ldeald~f~klh  551 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE------------------ALFNIGLTAEALGNLDEALDCFLKLH  551 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH------------------HHHHhcccHHHhcCHHHHHHHHHHHH
Confidence            567889999999999999999999999976544433                  99999999999999999999998887


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      .+=-+++..++.++.+|..+.+..+|++.|-++. ..|++|.....+..++.
T Consensus       552 ~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence            7777899999999999999999999999999999 88888866555555544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=5e-06  Score=85.21  Aligned_cols=117  Identities=12%  Similarity=0.108  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..++..+...+..|++++|...++..+...|+++.                  ++.-++.++++.++..+|++.+++++.
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~------------------~~~~~~~i~~~~nk~~~A~e~~~kal~  368 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY------------------YLELAGDILLEANKAKEAIERLKKALA  368 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            34566777888888999999999998888888876                  777788899999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      ++|+.+-..+.+|.+|...|++.+|+..++..+ .+|++|..+..+.+.....+..
T Consensus       369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            999888888999999999999999999999988 8888888887777777665544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.37  E-value=1.7e-06  Score=88.94  Aligned_cols=83  Identities=13%  Similarity=0.088  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++..+..+|..++..|+|++|+..+++|+.++|.++.                  +|+++|.+++.+|+|++|+..++++
T Consensus        35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~------------------a~~~lg~~~~~lg~~~eA~~~~~~a   96 (356)
T PLN03088         35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK------------------AYLRKGTACMKLEEYQTAKAALEKG   96 (356)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhc
Q 035535           82 LKIESSHFKALLCKGKILLSL  102 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~l  102 (518)
                      ++++|++..+...++.+...+
T Consensus        97 l~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         97 ASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHhCCCCHHHHHHHHHHHHHH
Confidence            999999999888877766555

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.32  E-value=9e-07  Score=67.74  Aligned_cols=57  Identities=23%  Similarity=0.269  Sum_probs=52.0

Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           65 RSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        65 ~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      +++.|+|++|+..+++++..+|++..+++.+|.+|...|++++|...+++++ ..|++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            3678999999999999999999999999999999999999999999999999 66643

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.29  E-value=3.1e-06  Score=76.32  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc----------CHHHHHHHHHHHHhcCCCc
Q 035535           19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR----------DFDNALRDCEQALKIESSH   88 (518)
Q Consensus        19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg----------~~~~Al~~~~~al~l~p~~   88 (518)
                      |+.|.+.|......+|.+++                  .+.|=|.+++.+.          -+++|+.-+++||.++|+.
T Consensus         7 FE~ark~aea~y~~nP~Dad------------------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~   68 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDAD------------------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK   68 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH------------------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHHhCcHhHH------------------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence            78899999999999999877                  7777777777664          3678999999999999999


Q ss_pred             hHHHHHHHHHHHhccC-----------hHHHHHHHHHHH-hccccC
Q 035535           89 FKALLCKGKILLSLNR-----------YSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        89 ~ka~~~~g~al~~lg~-----------~~~A~~~~~~al-~~p~~~  122 (518)
                      ..+++.+|.+|..++.           |++|.++|++|. .+|++.
T Consensus        69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            9999999999997765           788999999999 777543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.29  E-value=2.1e-06  Score=67.68  Aligned_cols=62  Identities=29%  Similarity=0.375  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCC---chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           55 CLALSNRAEARSRLRDFDNALRDCEQALKI----ESS---HFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l----~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +.++.|+|.+|..+|+|++|+..+++++++    .++   ...+++++|.++..+|++++|++.|++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            348999999999999999999999999976    222   36789999999999999999999999998

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=5.6e-06  Score=86.21  Aligned_cols=130  Identities=14%  Similarity=0.141  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------------------------------------
Q 035535            1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---------------------------------------   41 (518)
Q Consensus         1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------------------------------------   41 (518)
                      +++++|..+|......++=..||..+.++++++|++...-+                                       
T Consensus       317 ~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~  396 (579)
T KOG1125|consen  317 QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE  396 (579)
T ss_pred             HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence            37899999999999999999999999999999998533200                                       


Q ss_pred             --------hhhHHHHHHHHH-H-----------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 035535           42 --------QEASQLSKLKKS-L-----------CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLS  101 (518)
Q Consensus        42 --------~~~~~~~~~~~~-l-----------~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~  101 (518)
                              .....+.++.+. +           .-++.-+|..|.-.|+|++|+..++.||..+|++...|.|+|..+..
T Consensus       397 ~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN  476 (579)
T KOG1125|consen  397 DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN  476 (579)
T ss_pred             cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence                    000001111110 0           12556678888889999999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535          102 LNRYSMALDCFKETL-VDAQASGSLETVNG  130 (518)
Q Consensus       102 lg~~~~A~~~~~~al-~~p~~~~~~~~l~~  130 (518)
                      -.+.++|+..|++|+ +.|++....-++..
T Consensus       477 ~~~s~EAIsAY~rALqLqP~yVR~RyNlgI  506 (579)
T KOG1125|consen  477 GNRSEEAISAYNRALQLQPGYVRVRYNLGI  506 (579)
T ss_pred             CcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence            999999999999999 88877655444433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.26  E-value=6.2e-06  Score=73.34  Aligned_cols=85  Identities=12%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      ..+.+|.-++..|++++|...++.+..+||.++..|+.+|.++..+|+|++|+.+|.+++ ++|++|.....+...+-.+
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            678889999999999999999999999999999999999999999999999999999999 8999998777777777666


Q ss_pred             HHHHHH
Q 035535          136 KKLEYQ  141 (518)
Q Consensus       136 ~~~~~~  141 (518)
                      ++....
T Consensus       117 G~~~~A  122 (157)
T PRK15363        117 DNVCYA  122 (157)
T ss_pred             CCHHHH
Confidence            665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.25  E-value=5.7e-06  Score=65.17  Aligned_cols=72  Identities=21%  Similarity=0.259  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+.+.|..++..|+|++|+..|++++++......   .        ......++.|+|.++..+|++++|++.+++|
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---D--------HPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---H--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---C--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567889999999999999999999999998433221   0        1123458999999999999999999999999


Q ss_pred             Hhc
Q 035535           82 LKI   84 (518)
Q Consensus        82 l~l   84 (518)
                      +++
T Consensus        73 l~i   75 (78)
T PF13424_consen   73 LDI   75 (78)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            976

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.24  E-value=1.6e-05  Score=81.59  Aligned_cols=94  Identities=17%  Similarity=0.029  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +-..|..+++.++..+|++.+.+++.++|+.+.                  +..|+|.++++.|++.+|+..++..+.-+
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~------------------l~~~~a~all~~g~~~eai~~L~~~~~~~  404 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALALDPNSPL------------------LQLNLAQALLKGGKPQEAIRILNRYLFND  404 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH------------------HHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence            345788999999999999999999999999865                  89999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                      |+++..|..+|++|-.+|+-.+|...+-+.+.
T Consensus       405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            99999999999999999999999999888883

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=4.5e-06  Score=80.84  Aligned_cols=82  Identities=13%  Similarity=0.099  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      -+-+++-+|.+.|.|+.|++....||.++|.+..                  +|..+|.+|+.+|+|++|++.|.+||++
T Consensus       117 yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk------------------ay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  117 YYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK------------------AYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH------------------HHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence            4567899999999999999999999999999876                  9999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccC
Q 035535           85 ESSHFKALLCKGKILLSLNR  104 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~  104 (518)
                      ||+|....-.+..+-..+++
T Consensus       179 dP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  179 DPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             CCCcHHHHHHHHHHHHHhcC
Confidence            99998555555444444433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.24  E-value=4.2e-05  Score=63.88  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=79.9

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh----
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK----   83 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~----   83 (518)
                      ..|...++.|-|++|...|++|.+....-+      +++..+....-++++.-++.++..+|+|++++...+++|.    
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP------~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIP------AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-------TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCC------hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            456667788999999999999999875544      2444555555677999999999999999999999999985    


Q ss_pred             ---cCCCc----hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 ---IESSH----FKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 ---l~p~~----~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                         ++.+.    ..+.+.+|.++..+|+.++|+..|+++-
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence               45554    4566899999999999999999999886

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.24  E-value=7.5e-06  Score=81.35  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +......+...++++++...+.++....+...+     +           .+|..+|.++.+.|++++|+.++++|++++
T Consensus       113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~-----------~~~~~~a~~~~~~G~~~~A~~~~~~al~~~  176 (280)
T PF13429_consen  113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-----A-----------RFWLALAEIYEQLGDPDKALRDYRKALELD  176 (280)
T ss_dssp             -----H-HHHTT-HHHHHHHHHHHHH-T---T------H-----------HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-----H-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            344455677888888888888887754321111     1           189999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      |++..++..++.++...|+++++.+.++... ..|+++.....+......+++.+
T Consensus       177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~  231 (280)
T PF13429_consen  177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE  231 (280)
T ss_dssp             TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence            9999999999999999999999999998888 55778877677776666655544

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=7.5e-07  Score=87.75  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQ-LSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++.|+..|+.++|..|...|.++++.....+.......++ ...+.......+.|.+.+-++++.+..|+..+..+
T Consensus       222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~  301 (372)
T KOG0546|consen  222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA  301 (372)
T ss_pred             hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence            45678899999999999999999999998764311100111111 12234445568889999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++.++...+++|+++.++..+.++++|++.++.+. ..|++...
T Consensus       302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i  345 (372)
T KOG0546|consen  302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI  345 (372)
T ss_pred             cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence            99999999999999999999999999999999999 77655433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.22  E-value=1.3e-05  Score=63.33  Aligned_cols=76  Identities=24%  Similarity=0.336  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +++++|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|++.|++++ ..|.++.....+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999999999999999 6665553333333333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.22  E-value=1.1e-05  Score=91.00  Aligned_cols=118  Identities=11%  Similarity=-0.002  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccch---------hhhhhHHHHH-HHHH------HHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITE---------TKQEASQLSK-LKKS------LCLALSNRAEAR   65 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~---------~~~~~~~~~~-~~~~------l~~~~~nra~a~   65 (518)
                      .++..+..+...++.|++..|++.|.++++.+|.++..         .....++... ..+.      -...+...|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            45667889999999999999999999999999997420         0000000000 0000      011222335566


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           66 SRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        66 ~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ..+|+|++|++.++++++.+|+++.+++.++.++...+++++|++.++++. .+|
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp  167 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP  167 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence            666777777777777777777776666666666677777777777776666 444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=1.2e-05  Score=75.90  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      .+-+|..+-..|+|++|++.|+..|+-+|.+..                  .+-..-.+.-.+|+.-+|++....-++.-
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v------------------~~KRKlAilka~GK~l~aIk~ln~YL~~F  150 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV------------------IRKRKLAILKAQGKNLEAIKELNEYLDKF  150 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhH------------------HHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence            345678888899999999999999999998865                  55555566677889899999999999999


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      +.+..||..++.+|..+|+|++|.-||++.+ ..|.+|--...+.+++=
T Consensus       151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999 77777655555555443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.18  E-value=7.1e-06  Score=75.03  Aligned_cols=112  Identities=11%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      ..+.+|-.++|..+...+...+...+...                ...++++.|.++..+|+|++|+..+++++.+.|++
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~   68 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSGEK----------------EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP   68 (168)
T ss_pred             cccccccccccccchhhhhHhccCCchhH----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence            45667777888888888866655433321                12389999999999999999999999999997763


Q ss_pred             ---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535           89 ---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK  136 (518)
Q Consensus        89 ---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~  136 (518)
                         +.+|+.+|.++..+|++++|+..|++++ ..|........+..+.....
T Consensus        69 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         69 YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence               4589999999999999999999999999 77766555555555555433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.15  E-value=1.9e-05  Score=81.00  Aligned_cols=94  Identities=13%  Similarity=0.058  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|..+...|++++|+..+++++.+.|+++.                  ++..+|.++...|++++|+..+++++..
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~------------------~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW------------------AVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH------------------HHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            3445677888999999999999999999988866                  8888999999999999999999999998


Q ss_pred             CCCch----HHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 ESSHF----KALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 ~p~~~----ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .|..+    ..|+.+|.++...|++++|+..|++++
T Consensus       178 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         178 WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            76432    356788999999999999999999987

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.15  E-value=2.2e-05  Score=74.68  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=85.2

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS   87 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~   87 (518)
                      +..+.+...|+-+.+.....++....|.+..                  ++.-.+..+++.|+|.+|+..+.++..++|+
T Consensus        71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~------------------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~  132 (257)
T COG5010          71 KLATALYLRGDADSSLAVLQKSAIAYPKDRE------------------LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT  132 (257)
T ss_pred             HHHHHHHhcccccchHHHHhhhhccCcccHH------------------HHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence            3455555566656666665565555555433                  4445889999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           88 HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      ++++|.-+|.+|..+|++++|...|.+++ +.|++|....++...+-
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~  179 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL  179 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence            99999999999999999999999999999 88888876555554443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.15  E-value=6.8e-06  Score=87.63  Aligned_cols=114  Identities=16%  Similarity=0.125  Sum_probs=93.6

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      +..|+..+.+++|++|..+++.+++++|-...                  .|+++|.|.++++++..|.++|.+++.++|
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~------------------~wf~~G~~ALqlek~q~av~aF~rcvtL~P  550 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEINPLQLG------------------TWFGLGCAALQLEKEQAAVKAFHRCVTLEP  550 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhcCccchh------------------HHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            34455566779999999999999999998876                  899999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      ++..+|.+++.+|..+++-.+|...+++|+ -.-++...+++...+..+....
T Consensus       551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~  603 (777)
T KOG1128|consen  551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF  603 (777)
T ss_pred             CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH
Confidence            999999999999999999999999999999 3434444444444444443333

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=2.4e-05  Score=78.87  Aligned_cols=95  Identities=23%  Similarity=0.265  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+.+.+..+.+.++|.+|+...+++|.++|++..                  +++.+|.|++.+|+|+.|+.++++|++
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K------------------ALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK------------------ALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh------------------HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            34567888899999999999999999999999987                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHH-HHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMA-LDCFKETL  116 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A-~~~~~~al  116 (518)
                      ++|.|-.+...+..+.....++.+. .+.|....
T Consensus       320 ~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  320 LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999977777777777777666655 55566665

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=3.9e-06  Score=81.68  Aligned_cols=155  Identities=18%  Similarity=0.260  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchh---------hhhhHHHHH-HHHHHH------HHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITET---------KQEASQLSK-LKKSLC------LALSNRAEARS   66 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~---------~~~~~~~~~-~~~~l~------~~~~nra~a~~   66 (518)
                      +.-+...+.++-..+++++|+++|..+++..|.+.+.-         ..+|+-.-. .++.+.      .+++|+|.|.+
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            34455677778888899999999999999888765421         122331111 111211      37999999999


Q ss_pred             hccCHHHHHHHHHHHHhcC--C-CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHHh
Q 035535           67 RLRDFDNALRDCEQALKIE--S-SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQS  142 (518)
Q Consensus        67 ~lg~~~~Al~~~~~al~l~--p-~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~~  142 (518)
                      --++|+-++..+++|+..-  | .-...||++|.+....|++..|.++|+-++ .+|++.....++..+-.         
T Consensus       370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~---------  440 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA---------  440 (478)
T ss_pred             hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh---------
Confidence            9999999999999999874  3 246789999999999999999999999999 77766665555544332         


Q ss_pred             hhcccchhHhHhhccCCCCccccc
Q 035535          143 RTGALDLSDWILNGLRGKCPELAE  166 (518)
Q Consensus       143 ~~g~~d~~~~~~~~~~~~~p~~~~  166 (518)
                      +.|..+-..-+.+......|+..+
T Consensus       441 r~G~i~~Arsll~~A~s~~P~m~E  464 (478)
T KOG1129|consen  441 RSGDILGARSLLNAAKSVMPDMAE  464 (478)
T ss_pred             hcCchHHHHHHHHHhhhhCccccc
Confidence            344444333344444444566443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.05  E-value=8.8e-05  Score=79.80  Aligned_cols=118  Identities=13%  Similarity=0.124  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhh---hcHHHHHHHHHHHHHHhhcccchhhh-----------h---hHHHHH----HHHHH--------H
Q 035535            5 QLRSKATELLLR---EEWKESVQVYTQFIDLCQSQITETKQ-----------E---ASQLSK----LKKSL--------C   55 (518)
Q Consensus         5 ~l~~~Gn~~~~~---g~~~~Ai~~y~~Al~~~p~~~~~~~~-----------~---~~~~~~----~~~~l--------~   55 (518)
                      .+..+|..++.+   +++..|+.+|++|++++|+++.....           +   ...+..    ..+.+        .
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~  420 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP  420 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence            456677777654   44889999999999999997432110           0   011111    11100        1


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      .+|.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+ ++|.+|.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            3566678888889999999999999999999 57899999999999999999999999999 8887764

>COG2940 Proteins containing SET domain [General function prediction only]

Probab=98.03  E-value=2.5e-06  Score=91.21  Aligned_cols=69  Identities=41%  Similarity=0.694  Sum_probs=55.7

Q ss_pred             ccccccCCCCCCceEEeeCC----EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHH-hcccCCeEeecCCCCCC
Q 035535          315 LASFINHSCSPNARRVHVGD----YIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFHCKCKRCKFE  383 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~~~~----~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~  383 (518)
                      .+.++||||.||+.......    .+.++|+|||.+||||+++|.........+.. ....|++.|.|.+|+..
T Consensus       405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (480)
T COG2940         405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT  478 (480)
T ss_pred             ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence            45799999999999876532    88999999999999999999987654333233 45689999999999864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.03  E-value=8.7e-05  Score=72.54  Aligned_cols=102  Identities=17%  Similarity=0.274  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      ++...-+.|-+..+|++||+.-++...+.+...             ...++..|+.+|..++...+.+.|+....+|++.
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-------------~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa  209 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-------------RVEIAQFYCELAQQALASSDVDRARELLKKALQA  209 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-------------hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence            445555666666677777776666666655432             2356679999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ||+.+.|-..+|.+....|+|+.|++.++.++ .+|
T Consensus       210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~  245 (389)
T COG2956         210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP  245 (389)
T ss_pred             CccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence            99999999999999999999999999999999 554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.01  E-value=4.6e-05  Score=64.53  Aligned_cols=66  Identities=17%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      .+++.|..+++.|++++|++.++++++.+|++   ..+++.+|.++...|++++|+..|++++ ..|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence            78999999999999999999999999999876   5799999999999999999999999999 677654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.01  E-value=4.4e-05  Score=70.07  Aligned_cols=78  Identities=21%  Similarity=0.286  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +++++|..+...|++++|+..++++++++|+.   ..+++.+|.++..+|+|++|+..|++++ ..|.++.....+...+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  116 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            89999999999999999999999999987753   5689999999999999999999999999 7776654444444444


Q ss_pred             HH
Q 035535          133 EK  134 (518)
Q Consensus       133 ~~  134 (518)
                      ..
T Consensus       117 ~~  118 (172)
T PRK02603        117 HK  118 (172)
T ss_pred             HH
Confidence            33

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]

Probab=98.01  E-value=1.3e-05  Score=76.14  Aligned_cols=43  Identities=35%  Similarity=0.489  Sum_probs=36.4

Q ss_pred             cccccCCCCCCceEEe---eC-CEEEEEEcCCCCCCCeEEeecCCCC
Q 035535          316 ASFINHSCSPNARRVH---VG-DYIIVHASRDVKAGEEITFAYFDML  358 (518)
Q Consensus       316 ~s~~NHsC~PN~~~~~---~~-~~~~v~A~rdI~~Geeit~sY~~~~  358 (518)
                      ..+||||-.+|+..-.   +| .++++.|.|||.+||||+..|+|..
T Consensus       334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRS  380 (392)
T KOG1085|consen  334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRS  380 (392)
T ss_pred             hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccc
Confidence            4789999999997543   33 3899999999999999999999853

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]

Probab=98.00  E-value=1.5e-05  Score=82.06  Aligned_cols=43  Identities=47%  Similarity=0.593  Sum_probs=36.6

Q ss_pred             cccccCCCCCCceEEee--C------CEEEEEEcCCCCCCCeEEeecCCCC
Q 035535          316 ASFINHSCSPNARRVHV--G------DYIIVHASRDVKAGEEITFAYFDML  358 (518)
Q Consensus       316 ~s~~NHsC~PN~~~~~~--~------~~~~v~A~rdI~~Geeit~sY~~~~  358 (518)
                      +.++||||.||+.+...  +      -++.+.|+++|++|+|+|+.|+...
T Consensus       273 ~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~  323 (364)
T KOG1082|consen  273 ARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY  323 (364)
T ss_pred             cccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence            57999999999987643  3      1688999999999999999999764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.00  E-value=0.00018  Score=64.05  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchh---hhhhHHH-HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITET---KQEASQL-SKLKKSLCLALSNRAEARSRLRDFDNALRDCE   79 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~---~~~~~~~-~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~   79 (518)
                      +.+...|......++.+.++..+.+++.+.....-++   ..+.... ..+......++..++..+...|++++|+..++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            4455567778888999999999999999876554322   1223322 34555666778888899999999999999999


Q ss_pred             HHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           80 QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        80 ~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +++.++|.+..+|..+-.+|...|++.+|++.|++..
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999876

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.98  E-value=4.9e-05  Score=85.81  Aligned_cols=108  Identities=10%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..+...|+|++|++.|+++++.+|+++.                  ++..++.++...+++++|++.+++++.
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~------------------~l~gLa~~y~~~~q~~eAl~~l~~l~~  164 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD------------------LISGMIMTQADAGRGGVVLKQATELAE  164 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence            34455677888999999999999999999999876                  777889999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG  130 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~  130 (518)
                      .+|.+... ..++.++..++++.+|++.|++++ ..|++++....+..
T Consensus       165 ~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~  211 (822)
T PRK14574        165 RDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE  211 (822)
T ss_pred             cCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99985544 445666666788877999999999 77766554333333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.97  E-value=4.5e-05  Score=78.77  Aligned_cols=91  Identities=18%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS   87 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~   87 (518)
                      ..+..++..++-.+|+....++|...|.+..                  ++.--|..+++.++|+.|++.+++|+++.|+
T Consensus       205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~------------------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~  266 (395)
T PF09295_consen  205 LLARVYLLMNEEVEAIRLLNEALKENPQDSE------------------LLNLQAEFLLSKKKYELALEIAKKAVELSPS  266 (395)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            3556666667777788888888877776654                  6777788888888888888888888888888


Q ss_pred             chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           88 HFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ..++|+.++.+|..+|+|++|+..+..+-
T Consensus       267 ~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  267 EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            88888888888888888888887776543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=4e-05  Score=79.79  Aligned_cols=114  Identities=16%  Similarity=0.224  Sum_probs=90.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI----   84 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l----   84 (518)
                      .|.++.+.++++-|-..|.+|+.++|.++-                  .+.-+|.+.+..+.|.+|+.++..++..    
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl------------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~  447 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPL------------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSV  447 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcch------------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence            466666677777777777777777777765                  7888999999999999999999999933    


Q ss_pred             C---CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535           85 E---SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus        85 ~---p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      +   +.+...+.++|.++..+++|++|+.+|+++| ..|.++.....+.-.....+.+..
T Consensus       448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~  507 (611)
T KOG1173|consen  448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK  507 (611)
T ss_pred             cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence            1   2356678999999999999999999999999 888888777666666655555543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.95  E-value=5.4e-05  Score=83.20  Aligned_cols=118  Identities=11%  Similarity=0.185  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++..+...+|.+|-.|+|..+...+..|+...-..+               +.+-.++++|.+|..+|+|++|..+|.++
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~---------------~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s  333 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS---------------IKAESFYQLGRSYHAQGDFEKAFKYYMES  333 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH---------------HHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            345677788999999999999999999987653222               12337999999999999999999999999


Q ss_pred             HhcCCCc-hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           82 LKIESSH-FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        82 l~l~p~~-~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      ++.+|++ .-+++.+|+.+...|+++.|..+|++.+ ..|++......+..+...
T Consensus       334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~  388 (1018)
T KOG2002|consen  334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH  388 (1018)
T ss_pred             HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence            9999988 7889999999999999999999999999 788777665555444433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.95  E-value=0.00012  Score=80.01  Aligned_cols=113  Identities=16%  Similarity=0.170  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +.|+..+...-+.|++.+|+-+|++||...|.+..                  .+++++..|.++|++..|+.-+.+++.
T Consensus       208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~------------------~~~ers~L~~~~G~~~~Am~~f~~l~~  269 (895)
T KOG2076|consen  208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE------------------LIYERSSLYQKTGDLKRAMETFLQLLQ  269 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH------------------HHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence            67889999999999999999999999999999876                  899999999999999999999999999


Q ss_pred             cCC----CchHHH-HHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHH
Q 035535           84 IES----SHFKAL-LCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEK  134 (518)
Q Consensus        84 l~p----~~~ka~-~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~  134 (518)
                      ++|    ...... ++.+..+...++-+.|++.+..++....+......+..+.+-
T Consensus       270 ~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael  325 (895)
T KOG2076|consen  270 LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL  325 (895)
T ss_pred             hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence            999    223333 455888999999999999999998644444455555544433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.95  E-value=0.00013  Score=77.48  Aligned_cols=104  Identities=15%  Similarity=0.253  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.+.|..|.+.|+|++|..++.+|+++......   .+..       .+...+.|.+.++..+++|++|+..+.+++
T Consensus       283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~---~~~~-------~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG---ASHP-------EVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc---cChH-------HHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            567889999999999999999999999998765221   1111       234489999999999999999999999999


Q ss_pred             hc--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KI--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++        +|.-++.+-++|.+|+.+|+|++|.+.|++|+
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai  394 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI  394 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            86        23457889999999999999999999999999

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.94  E-value=4.7e-05  Score=83.67  Aligned_cols=124  Identities=11%  Similarity=0.094  Sum_probs=90.3

Q ss_pred             hhhcHHHHHHHHHHHHHHhhcccchhh---------hhhH---HH-HHHHHHH---HHHHHHHHHHHHhccCHHHHHHHH
Q 035535           15 LREEWKESVQVYTQFIDLCQSQITETK---------QEAS---QL-SKLKKSL---CLALSNRAEARSRLRDFDNALRDC   78 (518)
Q Consensus        15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~~~---~~-~~~~~~l---~~~~~nra~a~~~lg~~~~Al~~~   78 (518)
                      .++.++.|++.|.++|+.+|.+.....         .+..   ++ .+.+...   +.+|.|+|.||+.+|+|..|++.|
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence            455667777777777777665432100         0000   00 1111111   248999999999999999999999


Q ss_pred             HHHHhcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           79 EQALKIE--SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        79 ~~al~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      +.+++..  .+++..+.++|++++..|.|.+|.+.+.+|+ ..|.++....++..++.+....
T Consensus       704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s  766 (1018)
T KOG2002|consen  704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAES  766 (1018)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence            9999863  4678999999999999999999999999999 8898888777777777665443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.93  E-value=0.00016  Score=64.35  Aligned_cols=98  Identities=23%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..........+..+++..+...+.+.+.-.|+.+.               -..+.+.+|.+++..|+|++|+..++.++
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y---------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~   75 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY---------------AALAALQLAKAAYEQGDYDEAKAALEKAL   75 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344556666677788999988889988888777632               12388899999999999999999999999


Q ss_pred             hcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535           83 KIESSH---FKALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        83 ~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      ...|+.   ..+.+++|.+++..|+|++|+..++..
T Consensus        76 ~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~  111 (145)
T PF09976_consen   76 ANAPDPELKPLARLRLARILLQQGQYDEALATLQQI  111 (145)
T ss_pred             hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            987654   568999999999999999999999763

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=3.8e-05  Score=82.10  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      .+.|...|..+.+.++++.|.+.|++++.++|++..                  +|.|++.+|+++++-.+|...+.+|+
T Consensus       519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e------------------aWnNls~ayi~~~~k~ra~~~l~EAl  580 (777)
T KOG1128|consen  519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE------------------AWNNLSTAYIRLKKKKRAFRKLKEAL  580 (777)
T ss_pred             hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh------------------hhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence            467899999999999999999999999999999987                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCC
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASG  123 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~  123 (518)
                      +.+-.+++.|-+--.+....|.+++|++.|.+.+..+.+..
T Consensus       581 Kcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  581 KCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             hcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999999999996554444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.90  E-value=7.3e-05  Score=79.34  Aligned_cols=103  Identities=16%  Similarity=0.151  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..++.+|+|+.|+..+.+|++..-....  .        ....+.....++|..|..+++|.+|+..|++|+.
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G--~--------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG--L--------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC--c--------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45667899999999999999999999998322111  0        0011223555799999999999999999999997


Q ss_pred             c--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 I--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +        +|.-+-++.++|.+|+..|+|++|..++++|+
T Consensus       270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            6        45557789999999999999999999999999

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=5.2e-05  Score=69.26  Aligned_cols=68  Identities=24%  Similarity=0.429  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      -+-++|.++++.+.|+.||...++||++.|.+..                  ++..||.+|-++..|++|++||.+.+++
T Consensus       136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k------------------Al~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK------------------ALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            3567889999999999999999999999998765                  8889999999999999999999999999


Q ss_pred             CCCchH
Q 035535           85 ESSHFK   90 (518)
Q Consensus        85 ~p~~~k   90 (518)
                      +|....
T Consensus       198 dPs~~e  203 (271)
T KOG4234|consen  198 DPSRRE  203 (271)
T ss_pred             CcchHH
Confidence            997643

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.88  E-value=0.00013  Score=74.87  Aligned_cols=118  Identities=11%  Similarity=0.111  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh------------hhhHHHHH-------HHHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK------------QEASQLSK-------LKKSLCLALSNRAE   63 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~------------~~~~~~~~-------~~~~l~~~~~nra~   63 (518)
                      .+....+|..++..|++++|+..+.++++..|.+...-.            .......+       .......++.++|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            345667889999999999999999999999988753110            00000000       00011235667888


Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           64 ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        64 a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      ++...|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++ ..|.
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            99999999999999999999999999999999999999999999999999998 5553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.87  E-value=0.00025  Score=64.28  Aligned_cols=118  Identities=18%  Similarity=0.186  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLC-QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+.-...|+.+...|++.+|..+|.+++.-- ..++.                  .+..+|.+.+.++++.+|...++..
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a------------------~lLglA~Aqfa~~~~A~a~~tLe~l  150 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA------------------MLLGLAQAQFAIQEFAAAQQTLEDL  150 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH------------------HHHHHHHHHHhhccHHHHHHHHHHH
Confidence            3455678999999999999999999998632 22222                  7889999999999999999999999


Q ss_pred             HhcCCC--chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           82 LKIESS--HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        82 l~l~p~--~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      .+.+|.  .+....-.|++|..+|+|.+|...|+.++ -.| .+...-...+.+.+..+..
T Consensus       151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~  210 (251)
T COG4700         151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLR  210 (251)
T ss_pred             hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchh
Confidence            999985  46778888999999999999999999999 444 3444445556666555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.84  E-value=0.00022  Score=76.40  Aligned_cols=85  Identities=18%  Similarity=0.220  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           55 CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      ..+++-+|+.|-.+|++++|++.+++||+.+|+.+..|+.+|++|-..|++.+|.++++.|. +++.|.-......+.+-
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999 77554433333333333


Q ss_pred             HHHHHH
Q 035535          134 KSKKLE  139 (518)
Q Consensus       134 ~~~~~~  139 (518)
                      ++.+.+
T Consensus       274 Ra~~~e  279 (517)
T PF12569_consen  274 RAGRIE  279 (517)
T ss_pred             HCCCHH
Confidence            333333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR00540 hemY_coli hemY protein

Probab=97.84  E-value=0.00016  Score=76.02  Aligned_cols=121  Identities=12%  Similarity=0.042  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      .......|..+...|++++|+..+++++...|++...                ....-+....+..++..++++.+++++
T Consensus       263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~----------------~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI----------------SLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc----------------hhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            4556678899999999999999999999999987530                011223344455688999999999999


Q ss_pred             hcCCCch--HHHHHHHHHHHhccChHHHHHHHHH--HH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535           83 KIESSHF--KALLCKGKILLSLNRYSMALDCFKE--TL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus        83 ~l~p~~~--ka~~~~g~al~~lg~~~~A~~~~~~--al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      +.+|+++  ..+..+|.+++..|+|++|.++|++  ++ ..|++. ....+..++.+.++.++
T Consensus       327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~  388 (409)
T TIGR00540       327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAE  388 (409)
T ss_pred             HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHH
Confidence            9999999  8888999999999999999999994  65 455333 34466666665555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.83  E-value=0.00048  Score=68.59  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLR-EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~-g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      +..+.+.|..+... |++++|+++|.+|+++......            ......++.+.|.++.++|+|++|++.++++
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~------------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS------------PHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45677888888888 9999999999999998765432            1122338889999999999999999999999


Q ss_pred             HhcC---C---CchH-HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH--HHHHHHHHH
Q 035535           82 LKIE---S---SHFK-ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL--ETVNGFLEK  134 (518)
Q Consensus        82 l~l~---p---~~~k-a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~--~~l~~~l~~  134 (518)
                      ....   +   .+++ .++..+.+++..|++-.|.+.|++.. .+|......  ..+..+++.
T Consensus       182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A  244 (282)
T PF14938_consen  182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA  244 (282)
T ss_dssp             HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence            8752   1   1244 45688889999999999999999999 778766552  334444443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.83  E-value=1.8e-05  Score=51.79  Aligned_cols=33  Identities=15%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHhccChHHHHH
Q 035535           78 CEQALKIESSHFKALLCKGKILLSLNRYSMALD  110 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~  110 (518)
                      |++||+++|+++.+|+++|.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            689999999999999999999999999999963

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.81  E-value=0.00026  Score=71.34  Aligned_cols=128  Identities=15%  Similarity=0.212  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      ....|...|++++|..|+..|.-||+++..-.....+.....++...+-..+--.+..||+++++.+.|+....+.|-++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            34567788999999999999999999986543322211112223333444466689999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      |.++.-+++.|.++..+.+|.+|.+.+--+. ..--...+.+.+..++.
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIk  307 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIK  307 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHH
Confidence            9999999999999999999999999988776 32112233344554443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.80  E-value=0.00013  Score=77.18  Aligned_cols=116  Identities=13%  Similarity=0.193  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+..+....|..++|...+....+.|...|.+++                  .+.-.|..+..+|+-++|...+..++..
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge------------------slAmkGL~L~~lg~~~ea~~~vr~glr~   70 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE------------------SLAMKGLTLNCLGKKEEAYELVRLGLRN   70 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch------------------hHHhccchhhcccchHHHHHHHHHHhcc
Confidence            4566778889999999999999999999999987                  7888899999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      |+...-.|.-+|.++..-.+|++|+.||+.|+ ..|+|.+....+.-+..+++.+
T Consensus        71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999 7777666555555544444443

>TIGR00540 hemY_coli hemY protein

Probab=97.79  E-value=0.00035  Score=73.43  Aligned_cols=117  Identities=17%  Similarity=0.162  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +.....+|-..+..|+|+.|.....++.+..|+...                  .+.-.|.+..++|+++.|.+++.++.
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~------------------~~llaA~aa~~~g~~~~A~~~l~~a~  145 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL------------------NLIKAAEAAQQRGDEARANQHLEEAA  145 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445567888899999999999999999988776543                  67788999999999999999999999


Q ss_pred             hcCCCch-HHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535           83 KIESSHF-KALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK  137 (518)
Q Consensus        83 ~l~p~~~-ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~  137 (518)
                      +..|++. ......+.++...|++++|.+.+++.+ ..|+++.....+..+....++
T Consensus       146 ~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d  202 (409)
T TIGR00540       146 ELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA  202 (409)
T ss_pred             HhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence            9999875 455557999999999999999999999 778777554444444443333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11906 transcriptional regulator; Provisional

Probab=97.78  E-value=0.00023  Score=73.52  Aligned_cols=102  Identities=13%  Similarity=0.040  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhhh---cHHHHHHHHHHHH---HHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------c
Q 035535            5 QLRSKATELLLRE---EWKESVQVYTQFI---DLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL---------R   69 (518)
Q Consensus         5 ~l~~~Gn~~~~~g---~~~~Ai~~y~~Al---~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l---------g   69 (518)
                      .+..+|...+.++   ..+.|+.++.+|+   .++|..+.                  +|.-+|.||+..         .
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~------------------a~~~lA~~h~~~~~~g~~~~~~  318 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE------------------CYCLLAECHMSLALHGKSELEL  318 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH------------------HHHHHHHHHHHHHHhcCCCchH
Confidence            3455666665443   5678999999999   88888766                  888888887765         2


Q ss_pred             CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           70 DFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        70 ~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      .-.+|++.+++|+++||.++.+++.+|.++...++++.|...|++|+ +.|+.+..
T Consensus       319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~  374 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL  374 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH
Confidence            45789999999999999999999999999999999999999999999 77765544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.78  E-value=0.00025  Score=79.78  Aligned_cols=114  Identities=13%  Similarity=0.122  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------hh--------------hHHHHHHHHHHH---
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---------QE--------------ASQLSKLKKSLC---   55 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~--------------~~~~~~~~~~l~---   55 (518)
                      +.++|....+.+...+++++|++....+++..|+...--.         ..              .+..-..-..++   
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence            4567778888888999999999999999998887543100         00              000000111122   


Q ss_pred             -------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           56 -------LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        56 -------~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                             .+++.+|.||-++|++++|...+++++++||+|+.++.++|..|... +.++|++.+.+|+
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence                   57888889999999999999999999999999999999999888888 8999999998888

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.75  E-value=0.00069  Score=64.83  Aligned_cols=104  Identities=16%  Similarity=0.137  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..|.++|...++.|+|.+|+..|.......|..+..    +           .+...++.++++.++|++|+..+++-
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~----~-----------qa~l~l~yA~Yk~~~y~~A~~~~drF   97 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS----E-----------QAQLDLAYAYYKNGEYDLALAYIDRF   97 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc----H-----------HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            36789999999999999999999999999888876541    1           17889999999999999999999999


Q ss_pred             HhcCCCchH---HHHHHHHHHHhcc--------ChHHHHHHHHHHH-hccc
Q 035535           82 LKIESSHFK---ALLCKGKILLSLN--------RYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        82 l~l~p~~~k---a~~~~g~al~~lg--------~~~~A~~~~~~al-~~p~  120 (518)
                      +.+.|+++.   ++|-+|.+++..-        --.+|+..|+..+ .-|+
T Consensus        98 i~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn  148 (254)
T COG4105          98 IRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN  148 (254)
T ss_pred             HHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence            999998765   6888899877432        2347788888888 6664

>PRK11906 transcriptional regulator; Provisional

Probab=97.75  E-value=0.00015  Score=74.92  Aligned_cols=86  Identities=9%  Similarity=0.019  Sum_probs=80.9

Q ss_pred             hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      ..+-.+|..+-.+|++++|.++.                  ++..+|.++.-.++++.|+..+++|+.++|+.+.+||..
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~------------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~  378 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGK------------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR  378 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence            44567899999999999999987                  999999999999999999999999999999999999999


Q ss_pred             HHHHHhccChHHHHHHHHHHH-hcc
Q 035535           96 GKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        96 g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      |.++...|+.++|.+.+++++ +.|
T Consensus       379 ~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        379 ALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccCc
Confidence            999999999999999999999 776

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=5.1e-05  Score=49.40  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      +|+++|.+++.+|+|++|+.++++|++++|++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            78888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00038  Score=70.10  Aligned_cols=99  Identities=14%  Similarity=0.087  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCH----------
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF----------   71 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~----------   71 (518)
                      +.+.+..+|+.+...|+.++|+-.|+.|+.+.|....                  .|-.+-.+|+..|++          
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~------------------~Y~GL~hsYLA~~~~kEA~~~An~~  394 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE------------------IYRGLFHSYLAQKRFKEANALANWT  394 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH------------------HHHHHHHHHHhhchHHHHHHHHHHH
Confidence            4678889999999999999999999999999987654                  333333333333333          


Q ss_pred             --------------------------HHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           72 --------------------------DNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        72 --------------------------~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                                                ++|...++++|.++|.+.+|-..+|..+...|++++++..+++++.+
T Consensus       395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~  467 (564)
T KOG1174|consen  395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII  467 (564)
T ss_pred             HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence                                      56777777777888888888888888888888888888888888833

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.73  E-value=0.0001  Score=58.95  Aligned_cols=60  Identities=17%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ...+...|..+|+.|+|++|+..+++ +..+|.+..                  ..+-+|.|++++|+|++|++.+++|
T Consensus        25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~------------------~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD------------------IHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH------------------HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            34567789999999999999999999 777776544                  6667799999999999999999875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.72  E-value=0.00027  Score=76.13  Aligned_cols=119  Identities=13%  Similarity=0.092  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .|...+..+.+.++-++|..+..+|-.++|..+.                  .|+.+|.++...|++.+|.+.|..|+.+
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~------------------~~~~~G~~~~~~~~~~EA~~af~~Al~l  713 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS------------------VYYLRGLLLEVKGQLEEAKEAFLVALAL  713 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH------------------HHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence            3445566666677778888899999888887766                  8999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHH--HHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALD--CFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~--~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      ||+++.+...+|.++...|+-..|..  .+..++ .+|.+++.+..+....++.+..++.
T Consensus       714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence            99999999999999999999998888  899999 9999999999999999888777644

>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]

Probab=97.72  E-value=3.4e-05  Score=84.88  Aligned_cols=41  Identities=44%  Similarity=0.684  Sum_probs=34.9

Q ss_pred             cccccCCCCCCceEE---eeCC-EEEEEEcCCCCCCCeEEeecCC
Q 035535          316 ASFINHSCSPNARRV---HVGD-YIIVHASRDVKAGEEITFAYFD  356 (518)
Q Consensus       316 ~s~~NHsC~PN~~~~---~~~~-~~~v~A~rdI~~Geeit~sY~~  356 (518)
                      +.++||+|.|||...   .+|. ++.++|+|||++|||||..|-.
T Consensus      1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred             ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccc
Confidence            578899999999754   4454 8999999999999999999854

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.65  E-value=0.00075  Score=70.69  Aligned_cols=115  Identities=16%  Similarity=0.120  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +......|-..+..|+|++|.....++-...+. +.                 +.+...+.+-.+.|+++.|..++.+|.
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~-----------------l~~llaA~aA~~~g~~~~A~~~l~~A~  145 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PV-----------------VNYLLAAEAAQQRGDEARANQHLERAA  145 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344566788888889999998555554332111 11                 144555666699999999999999999


Q ss_pred             hcCCCchH-HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           83 KIESSHFK-ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        83 ~l~p~~~k-a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      +.+|++.- .....+..+...|++++|++.+++.+ ..|+++.....+...+.+.
T Consensus       146 ~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        146 ELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             hcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99998854 34566999999999999999999999 7777765555454444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.63  E-value=0.00011  Score=51.16  Aligned_cols=41  Identities=27%  Similarity=0.177  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGK   97 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~   97 (518)
                      ++..+|.+|..+|++++|++.++++++.+|+++.+++.+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            78899999999999999999999999999999999998875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.63  E-value=0.00017  Score=70.52  Aligned_cols=104  Identities=17%  Similarity=0.171  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      +++.+.-....|.+-.+...|+..|.+.++..|.+..                  .+...|.++..++++++|++.++.+
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT------------------~l~g~ARi~eam~~~~~a~~lYk~v  316 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT------------------YLLGQARIHEAMEQQEDALQLYKLV  316 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh------------------hhhhhHHHHHHHHhHHHHHHHHHHH
Confidence            3566677888899999999999999999999999876                  8889999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ++.+|.|+++.-..|.-|+--++.+.|+.+|++.+ .--.+|+
T Consensus       317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe  359 (478)
T KOG1129|consen  317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE  359 (478)
T ss_pred             HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence            99999999999999999999999999999999999 4433443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.0012  Score=64.71  Aligned_cols=98  Identities=11%  Similarity=0.084  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++-+-+.+..+....+.+.|.....+|+..+|+...                  +-.-+|.+.+..|+|.+|++.++.++
T Consensus       180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR------------------Asi~lG~v~~~~g~y~~AV~~~e~v~  241 (389)
T COG2956         180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVR------------------ASIILGRVELAKGDYQKAVEALERVL  241 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee------------------hhhhhhHHHHhccchHHHHHHHHHHH
Confidence            345567788888999999999999999999999876                  77788999999999999999999999


Q ss_pred             hcCCCc-hHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           83 KIESSH-FKALLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        83 ~l~p~~-~ka~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                      +.||.. +...-.+..||..+|+.++.+..+.++...
T Consensus       242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            999987 567888999999999999999999999943

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.56  E-value=0.00064  Score=58.30  Aligned_cols=66  Identities=29%  Similarity=0.238  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESS---HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +++++|-++-.+|+.++|+..|++++....+   -..++..+|.++..+|++++|+..+++++ ..|+++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence            7899999999999999999999999997543   36799999999999999999999999999 667533

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.53  E-value=0.0011  Score=70.46  Aligned_cols=93  Identities=16%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      |...|-.+-..++|.+||.+|+.|+.+.|++..                  +|.-+|....++++|+.....-.+.++++
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q------------------ilrDlslLQ~QmRd~~~~~~tr~~LLql~  139 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ------------------ILRDLSLLQIQMRDYEGYLETRNQLLQLR  139 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            455666666777788888888888888777765                  77777777888888888777777778888


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      |.+-..|+..+.++..+|+|..|...++...
T Consensus       140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~  170 (700)
T KOG1156|consen  140 PSQRASWIGFAVAQHLLGEYKMALEILEEFE  170 (700)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777778888888888888888877777666

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.51  E-value=0.0015  Score=65.06  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=71.3

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC--
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-RDFDNALRDCEQALKIE--   85 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-g~~~~Al~~~~~al~l~--   85 (518)
                      .+-..++..++.+|+.+|++|+.+.-....            ....+.++.++|.+|... |++++|++.+++|+++-  
T Consensus        80 ~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~------------~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~  147 (282)
T PF14938_consen   80 EAANCYKKGDPDEAIECYEKAIEIYREAGR------------FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ  147 (282)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            344445566888888888888887644332            112234889999999998 99999999999999872  


Q ss_pred             -C---CchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535           86 -S---SHFKALLCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        86 -p---~~~ka~~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                       .   .....+...|.++..+|+|++|++.|++...
T Consensus       148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             1   1245677899999999999999999999883

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.50  E-value=0.00024  Score=78.36  Aligned_cols=95  Identities=12%  Similarity=0.077  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..|..+|-.+.+.+++.+|+..++.|++.+|.+..                  +|..+|.+|...|+|..|++.+++|..
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n------------------~W~gLGeAY~~sGry~~AlKvF~kAs~  624 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN------------------LWLGLGEAYPESGRYSHALKVFTKASL  624 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHH------------------HHHHHHHHHHhcCceehHHHhhhhhHh
Confidence            34556777777788888888888888888887765                  788888888888888888888888888


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++|.+.-+.|..+.....+|+|.+|+..+...+
T Consensus       625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            888888788888888888888888888877766

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.47  E-value=0.001  Score=69.63  Aligned_cols=114  Identities=13%  Similarity=0.077  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ......+..+...|+.++|.....+++...| ++.                  +..-  ...+..++++++++.+++.++
T Consensus       264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~------------------l~~l--~~~l~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER------------------LVLL--IPRLKTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH------------------HHHH--HhhccCCChHHHHHHHHHHHh
Confidence            3455668889999999999999999998433 322                  2222  223345999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      .+|+++..++.+|.++...++|++|.+.|++++ ..|+++ ....+..++++..+.+
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~  378 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPE  378 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999 666443 2245666665554443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.0035  Score=59.69  Aligned_cols=95  Identities=17%  Similarity=0.178  Sum_probs=84.4

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      +.+--.+-.+|+--+||+....-++..+++++                  +|..+|..|+.+|+|++|.-.+++.+-++|
T Consensus       124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E------------------AW~eLaeiY~~~~~f~kA~fClEE~ll~~P  185 (289)
T KOG3060|consen  124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQE------------------AWHELAEIYLSEGDFEKAAFCLEELLLIQP  185 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH------------------HHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence            33444555678888999999999999999987                  999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHhcc---ChHHHHHHHHHHH-hcc
Q 035535           87 SHFKALLCKGKILLSLN---RYSMALDCFKETL-VDA  119 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg---~~~~A~~~~~~al-~~p  119 (518)
                      .++-.+-|+|.+++-+|   +++-|..+|.+++ ..|
T Consensus       186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            99999999999999776   6788999999999 554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.45  E-value=0.00021  Score=46.40  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           89 FKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        89 ~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      +++|+++|.++..+|+|++|+.+|++++ .+|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4789999999999999999999999999 7764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.44  E-value=9.4e-05  Score=48.34  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             HHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 035535           25 VYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR   76 (518)
Q Consensus        25 ~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~   76 (518)
                      +|++||+++|+++.                  +|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~------------------a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAE------------------AYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHH------------------HHHHHHHHHHHCcCHHhhcC
Confidence            48999999999987                  99999999999999999863

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.42  E-value=0.001  Score=65.31  Aligned_cols=72  Identities=14%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             HHHHHHHHH-HhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535           57 ALSNRAEAR-SRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV  128 (518)
Q Consensus        57 ~~~nra~a~-~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l  128 (518)
                      ..++.|..+ ++.|+|++|+..++..++..|++   +.++|.+|.+|+..|+|++|+..|++++ ..|+++.....+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            678888887 66799999999999999999988   5799999999999999999999999999 778776654444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.40  E-value=0.00072  Score=76.14  Aligned_cols=52  Identities=10%  Similarity=0.110  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           55 CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      ..++.|+|..|... +.++|++.+.+|+..              +..-++|..+.+.+.+.+ ..|.+
T Consensus       150 ~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d  202 (906)
T PRK14720        150 PEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDD  202 (906)
T ss_pred             HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCccc
Confidence            46899999999999 999999999999877              556668888888888887 55543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.36  E-value=0.00035  Score=45.19  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      +++++|.+++++|+|++|++.++++++++|+|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            67777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.0021  Score=62.81  Aligned_cols=90  Identities=14%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 035535           17 EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKG   96 (518)
Q Consensus        17 g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g   96 (518)
                      .+.++-+...+.-|..+|++..                  -|.-+|.+|+.+|++..|+..|.+|+++.|+++..+.-.|
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~e------------------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a  197 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAE------------------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA  197 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCch------------------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3466778888888999999887                  8999999999999999999999999999999999999999


Q ss_pred             HHHHhcc---ChHHHHHHHHHHH-hccccCCc
Q 035535           97 KILLSLN---RYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        97 ~al~~lg---~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      .+++...   .-.+|.+.|++++ .+|++...
T Consensus       198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         198 EALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            9998764   4568999999999 78765543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.35  E-value=0.0021  Score=66.53  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=93.4

Q ss_pred             hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHH
Q 035535           15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLC   94 (518)
Q Consensus        15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~   94 (518)
                      ..++++.|++.+++....+|.                     +..-+|.+++..++..+|++...++++.+|.+...+.-
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~  239 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNL  239 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            457899999999998887765                     44457888889999999999999999999999999999


Q ss_pred             HHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           95 KGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        95 ~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      .+..+...++|+.|+...++++ ..|++-..+..+.+.+...++.+..
T Consensus       240 Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  240 QAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999 8888888888888888777776654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0021  Score=64.96  Aligned_cols=103  Identities=13%  Similarity=0.045  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.|.-.|..+|..++|+.|+.+-.++|+.+|++..                  +|.-.|.++..+++.++|+-.|+.|.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~------------------alilKG~lL~~~~R~~~A~IaFR~Aq  361 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE------------------ALILKGRLLIALERHTQAVIAFRTAQ  361 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch------------------HHHhccHHHHhccchHHHHHHHHHHH
Confidence            456667777778888888888888888888887766                  77778888888888888888888888


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      .+-|.....|--+-.+|+..|++.+|.-.-+.++ ..|++..
T Consensus       362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence            8888888888777888888888888887777777 5554433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.31  E-value=0.00045  Score=44.64  Aligned_cols=33  Identities=24%  Similarity=0.454  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           89 FKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        89 ~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      +++|+.+|.+++.+|+|++|+++|++++ ..|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4789999999999999999999999999 77753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.27  E-value=0.00035  Score=70.33  Aligned_cols=99  Identities=13%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI-   84 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l-   84 (518)
                      +-+.||.++-.|+|++||..-..-|.+.....+            +...-.++.|+|.||.-+|+|+.|+++|++++.+ 
T Consensus       198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD------------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA  265 (639)
T KOG1130|consen  198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD------------RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA  265 (639)
T ss_pred             hcccCceeeeeccHHHHHHHHHHHHHHHHHhhh------------HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence            446789999999999999999999998766543            1111239999999999999999999999988754 


Q ss_pred             ---CCC--chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 ---ESS--HFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 ---~p~--~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                         ...  .++.-|.+|..|.-+.+|+.|+.++++-+
T Consensus       266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL  302 (639)
T KOG1130|consen  266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL  302 (639)
T ss_pred             HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence               322  35677999999999999999999998866

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.25  E-value=0.0038  Score=69.22  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHh
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCEQALK   83 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~~al~   83 (518)
                      .....+...+..++|++|++...+++..+|++..                  ++.-+|.++..++. .++|.+.|..|.+
T Consensus         4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYn------------------A~vFLGvAl~sl~q~le~A~ehYv~AaK   65 (1238)
T KOG1127|consen    4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNYN------------------AQVFLGVALWSLGQDLEKAAEHYVLAAK   65 (1238)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcch------------------hhhHHHHHHHhccCCHHHHHHHHHHHHh
Confidence            3455678888999999999999999999999987                  99999999999998 9999999999999


Q ss_pred             cCCCchHHHHHHHHHHHh---ccChHHHHHHHHHHH-hccccC
Q 035535           84 IESSHFKALLCKGKILLS---LNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~---lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++|++.-||-.++..|..   ...++++..+|++++ ..++..
T Consensus        66 ldpdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   66 LDPDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             cChhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence            999999999999988876   567899999999988 555433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.24  E-value=0.0072  Score=58.74  Aligned_cols=114  Identities=13%  Similarity=0.082  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-------------
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-------------   70 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-------------   70 (518)
                      ......|..+++.++|.+|+..|++.+...|+++..    +           -+++.+|.++..++.             
T Consensus        70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~----~-----------~a~Y~~g~~~~~~~~~~~~~~~~~~~~~  134 (243)
T PRK10866         70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D-----------YVLYMRGLTNMALDDSALQGFFGVDRSD  134 (243)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----H-----------HHHHHHHHhhhhcchhhhhhccCCCccc
Confidence            345678999999999999999999999999998761    1           178888888765541             


Q ss_pred             -----HHHHHHHHHHHHhcCCCch---HHH--------------HHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHH
Q 035535           71 -----FDNALRDCEQALKIESSHF---KAL--------------LCKGKILLSLNRYSMALDCFKETL-VDAQASGSLET  127 (518)
Q Consensus        71 -----~~~Al~~~~~al~l~p~~~---ka~--------------~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~  127 (518)
                           ..+|+..+++.++.-|+..   .+.              +..|.-|+..|.|..|+.-++.++ .-|+.+...+.
T Consensus       135 rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ea  214 (243)
T PRK10866        135 RDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDA  214 (243)
T ss_pred             cCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHH
Confidence                 3578899999999998742   222              344667899999999999999999 77766655444


Q ss_pred             HHHHH
Q 035535          128 VNGFL  132 (518)
Q Consensus       128 l~~~l  132 (518)
                      +..+.
T Consensus       215 l~~l~  219 (243)
T PRK10866        215 LPLME  219 (243)
T ss_pred             HHHHH
Confidence            44433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.21  E-value=0.0025  Score=64.86  Aligned_cols=95  Identities=14%  Similarity=0.074  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +++.+.|-.+-..|+.++|+++|-+.-.+.-+++.                  +++.+|.+|--+.+..+|++.+-++..
T Consensus       525 ealfniglt~e~~~~ldeald~f~klh~il~nn~e------------------vl~qianiye~led~aqaie~~~q~~s  586 (840)
T KOG2003|consen  525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE------------------VLVQIANIYELLEDPAQAIELLMQANS  586 (840)
T ss_pred             HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH------------------HHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence            45566666666666666666666555544444443                  556666666666666666666666666


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +-|+++..+-.+|..|-+.|+-.+|.+|+-...
T Consensus       587 lip~dp~ilskl~dlydqegdksqafq~~ydsy  619 (840)
T KOG2003|consen  587 LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY  619 (840)
T ss_pred             cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence            666666666666666666666555555544433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.21  E-value=0.0068  Score=57.19  Aligned_cols=106  Identities=15%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-----------CH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-----------DF   71 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-----------~~   71 (518)
                      .+.+...|..+++.|+|.+|+..|++.+...|+++..    +           -+++.+|.+++++.           ..
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~-----------~A~Y~~g~~~~~~~~~~~~~~~D~~~~  106 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D-----------YALYMLGLSYYKQIPGILRSDRDQTST  106 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H-----------HHHHHHHHHHHHHHHHHH-TT---HHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h-----------hHHHHHHHHHHHhCccchhcccChHHH
Confidence            3566788999999999999999999999999998651    1           17788888876653           34


Q ss_pred             HHHHHHHHHHHhcCCCch-----------------HHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           72 DNALRDCEQALKIESSHF-----------------KALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        72 ~~Al~~~~~al~l~p~~~-----------------ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      .+|+..++..+..-|++.                 .--+..|.-|+..|.|..|+..++.++ .-|+.+.
T Consensus       107 ~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~  176 (203)
T PF13525_consen  107 RKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA  176 (203)
T ss_dssp             HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred             HHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence            689999999999999752                 123445888999999999999999999 5564443

>PRK10941 hypothetical protein; Provisional

Probab=97.09  E-value=0.0045  Score=60.77  Aligned_cols=81  Identities=17%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           53 SLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        53 ~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      .+...+.|+=.+|++.++++.|+...+..+.++|+++.-+--+|.+|.++|.+..|..+++..+ .-|++|.. ..+...
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a-~~ik~q  257 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS-EMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH-HHHHHH
Confidence            4445888999999999999999999999999999999988889999999999999999999999 77876654 444444


Q ss_pred             HHH
Q 035535          132 LEK  134 (518)
Q Consensus       132 l~~  134 (518)
                      +..
T Consensus       258 l~~  260 (269)
T PRK10941        258 IHS  260 (269)
T ss_pred             HHH
Confidence            443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.07  E-value=0.01  Score=63.82  Aligned_cols=94  Identities=12%  Similarity=0.047  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      .-.+..+-..|++++|++..++||+..|..++                  +|...|.++-+.|++.+|.+..+.|-++|+
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e------------------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~  259 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE------------------LYMTKARILKHAGDLKEAAEAMDEARELDL  259 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence            44677777899999999999999999999877                  999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           87 SHFKALLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                      .+--.-..-++.+++.|+.++|.+.+......
T Consensus       260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence            88777777788899999999999999887743

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.03  E-value=0.0046  Score=56.13  Aligned_cols=71  Identities=14%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhh----------hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-
Q 035535            2 LMQQLRSKATELLLR----------EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-   70 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~----------g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-   70 (518)
                      +++.|.+-|..++..          .-+++|+..|++||.++|+...                  +++++|.+|..++. 
T Consensus        24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd------------------Alw~lGnA~ts~A~l   85 (186)
T PF06552_consen   24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD------------------ALWCLGNAYTSLAFL   85 (186)
T ss_dssp             -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH------------------HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH------------------HHHHHHHHHHHHHhh
Confidence            456777777777644          3468899999999999999877                  99999999988764 


Q ss_pred             ----------HHHHHHHHHHHHhcCCCchH
Q 035535           71 ----------FDNALRDCEQALKIESSHFK   90 (518)
Q Consensus        71 ----------~~~Al~~~~~al~l~p~~~k   90 (518)
                                |++|...+++|...+|++.-
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                      88999999999999998753

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.02  E-value=0.0062  Score=54.67  Aligned_cols=69  Identities=9%  Similarity=-0.052  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      ..+..|.-++..|++++|...+.-..-.||.+++-++-+|.++..+++|++|+..|..+. .++++|...
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            677888899999999999999999999999999999999999999999999999999999 777777543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.00  E-value=0.0038  Score=62.31  Aligned_cols=97  Identities=19%  Similarity=0.111  Sum_probs=60.4

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh--cc--CHHHHHHHHHHHHh
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR--LR--DFDNALRDCEQALK   83 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~--lg--~~~~Al~~~~~al~   83 (518)
                      -.-..+++.++++.|...+...-+.+.+.                    ...+++.++..  .|  ++.+|...|+...+
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~--------------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~  195 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDS--------------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSD  195 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCH--------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcH--------------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            34455666777777777666655443322                    44455554443  23  57788888888766


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ..|.++..+..+|.++..+|+|++|.+.+++++ .+|.+++.
T Consensus       196 ~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~  237 (290)
T PF04733_consen  196 KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT  237 (290)
T ss_dssp             CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence            666777777788888888888888888888887 66655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.0082  Score=63.32  Aligned_cols=113  Identities=18%  Similarity=0.268  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------hhhH----HHHHHHH--HHHHHHHHHHHHHHh
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---------QEAS----QLSKLKK--SLCLALSNRAEARSR   67 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~~~----~~~~~~~--~l~~~~~nra~a~~~   67 (518)
                      ++.+...-|.+...|+|++|+....+.+...|++.+.-.         +.-+    .+.+...  ......+..|.|+++
T Consensus        12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence            456777888899999999999999999999877644100         0001    0111110  111223688999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           68 LRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        68 lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                      +++.++|+..++   .+++...+.+.-.|+++|.+++|++|+..|+..+..
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn  139 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN  139 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            999999999998   677888899999999999999999999999998843

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.97  E-value=0.007  Score=60.41  Aligned_cols=87  Identities=16%  Similarity=0.165  Sum_probs=67.0

Q ss_pred             hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 035535           17 EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKG   96 (518)
Q Consensus        17 g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g   96 (518)
                      .++.+|.-.|++..+..+..+.                  .+...|.|++.+|+|++|.+.+.+|++.+|+++.++.+++
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~------------------~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli  242 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPK------------------LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI  242 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHH------------------HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            3699999999997655444332                  7888999999999999999999999999999999999999


Q ss_pred             HHHHhccChHH-HHHHHHHHH-hcccc
Q 035535           97 KILLSLNRYSM-ALDCFKETL-VDAQA  121 (518)
Q Consensus        97 ~al~~lg~~~~-A~~~~~~al-~~p~~  121 (518)
                      .+...+|+..+ +.+.+.+.. ..|++
T Consensus       243 v~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  243 VCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            99999999955 445555544 45543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.0024  Score=62.01  Aligned_cols=92  Identities=17%  Similarity=0.184  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.+.|-.+|+.|+|++|++.|+.|++...-.+.                  +-+|.|.|+++.++|..|++...+.+
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl------------------lAYniALaHy~~~qyasALk~iSEIi  205 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL------------------LAYNLALAHYSSRQYASALKHISEII  205 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCch------------------hHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            456778899999999999999999999998766654                  78899999999999999999988877


Q ss_pred             hc----CCC-------------------------chHHHHHHHHHHHhccChHHHHHHH
Q 035535           83 KI----ESS-------------------------HFKALLCKGKILLSLNRYSMALDCF  112 (518)
Q Consensus        83 ~l----~p~-------------------------~~ka~~~~g~al~~lg~~~~A~~~~  112 (518)
                      +.    .|.                         -..|+..++.++++.++|+.|.+.+
T Consensus       206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence            54    332                         2456677788888888888887654

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.0022  Score=64.14  Aligned_cols=81  Identities=17%  Similarity=0.081  Sum_probs=56.9

Q ss_pred             chhhhhhhhccccccchhhh-h--hhhhCCCCCcceeEeecccccccCCCC-CCceEEeeCCEEEEEEcCCCCCCCeEEe
Q 035535          277 LDMGKILSILDVNSLVEDAI-S--AKVLGKNKGLYGLGLWALASFINHSCS-PNARRVHVGDYIIVHASRDVKAGEEITF  352 (518)
Q Consensus       277 ~d~~~~~~i~~~N~f~~~~~-~--~~~~g~~~~~~~~gl~~~~s~~NHsC~-PN~~~~~~~~~~~v~A~rdI~~Geeit~  352 (518)
                      .|+..+.+++...+|.+... +  ..-........|-.+-|.+.++||+=. -|+...+..+.+.+.|.|+|++|+|+..
T Consensus       177 EdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgdev~n  256 (466)
T KOG1338|consen  177 EDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGDEVDN  256 (466)
T ss_pred             HHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcccccc
Confidence            34666666666666665422 1  000111222556788899999999865 5676777888999999999999999999


Q ss_pred             ecCCC
Q 035535          353 AYFDM  357 (518)
Q Consensus       353 sY~~~  357 (518)
                      +|+-.
T Consensus       257 ~dg~~  261 (466)
T KOG1338|consen  257 SDGLK  261 (466)
T ss_pred             ccccC
Confidence            99843

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.92  E-value=0.0024  Score=69.46  Aligned_cols=110  Identities=20%  Similarity=0.304  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR--LRDFDNALRDCE   79 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~--lg~~~~Al~~~~   79 (518)
                      .+..++.+||.+|++++|.+|.-.|..++.+.|.+..              ..+....|.+.|++.  +++|..++.+++
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~--------------~~a~~~~~~~s~~m~~~l~~~~~~~~E~~  117 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH--------------VVATLRSNQASCYMQLGLGEYPKAIPECE  117 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch--------------hhhhHHHHHHHHHhhcCccchhhhcCchh
Confidence            3567899999999999999999999999999885432              123378888888766  569999999999


Q ss_pred             HHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           80 QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        80 ~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      -|+...|..-+++++++.+|..+++.+-|++.+.-.. ..|.++...
T Consensus       118 la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~  164 (748)
T KOG4151|consen  118 LALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSAS  164 (748)
T ss_pred             hhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence            9999999999999999999999999999999966665 666655443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.90  E-value=0.0022  Score=64.78  Aligned_cols=99  Identities=18%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      -++-.+|..+++.|+++..+..|..||+.-..+.              +.+..+|+.+|.+|+.+++|++|+++-..-|.
T Consensus        18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl--------------~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt   83 (639)
T KOG1130|consen   18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDL--------------STLSAIYSQLGNAYFYLKDYEKALKYHTHDLT   83 (639)
T ss_pred             HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHH--------------HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH
Confidence            4677899999999999999999999999765443              35666899999999999999999996554443


Q ss_pred             c----C--CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 I----E--SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l----~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +    .  -..+|+--++|..+--+|.|++|+-+..+-+
T Consensus        84 lar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhL  122 (639)
T KOG1130|consen   84 LARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHL  122 (639)
T ss_pred             HHHHhcchhccccccccccchhhhhcccchHHHHHHHHh
Confidence            3    2  2457888899999999999999999988766

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.90  E-value=0.0088  Score=63.76  Aligned_cols=129  Identities=18%  Similarity=0.105  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchh------hhhhHHHHHHHHHHH---------HHHHHHHHHHHhccC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITET------KQEASQLSKLKKSLC---------LALSNRAEARSRLRD   70 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~------~~~~~~~~~~~~~l~---------~~~~nra~a~~~lg~   70 (518)
                      |...+...+..|+..+|.....+|++..|++.+-=      ...-.+.+..+.+++         .+|+.-+.....+++
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence            44456677778888888888888888888752200      000001112222222         145555666667899


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           71 FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        71 ~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      .++|+..++++|+.-|+..|.|+.+|+++..+++.+.|.+.|...+ .-|..+.-+-.+..+-++
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk  731 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK  731 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 777666655555444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.87  E-value=0.0017  Score=45.05  Aligned_cols=35  Identities=9%  Similarity=-0.049  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccc
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQIT   38 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~   38 (518)
                      +.+...|..+...|++++|+..|+++++.+|+++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~   36 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE   36 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            46788999999999999999999999999999976

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.84  E-value=0.0046  Score=57.57  Aligned_cols=67  Identities=12%  Similarity=0.025  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.+.-.|.-+...|+|+.|.+.|+-.++++|...-                  ++.|||.+++--|+|.-|.+|+.+--
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y------------------a~lNRgi~~YY~gR~~LAq~d~~~fY  160 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY------------------AHLNRGIALYYGGRYKLAQDDLLAFY  160 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH------------------HHhccceeeeecCchHhhHHHHHHHH
Confidence            445566788888999999999999999999999866                  89999999999999999999999888


Q ss_pred             hcCCC
Q 035535           83 KIESS   87 (518)
Q Consensus        83 ~l~p~   87 (518)
                      +-||+
T Consensus       161 Q~D~~  165 (297)
T COG4785         161 QDDPN  165 (297)
T ss_pred             hcCCC
Confidence            77776

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.78  E-value=0.0019  Score=41.77  Aligned_cols=31  Identities=29%  Similarity=0.429  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESS   87 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~   87 (518)
                      +|+++|.++.++|++++|+..++++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5667777777777777777777777777664

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.76  E-value=0.0055  Score=60.59  Aligned_cols=67  Identities=24%  Similarity=0.324  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      ..+++.+||+.+.|..|..-++.|+.++..+..                  +|+.|+.+...+|...+|.+||+.+|++.
T Consensus       134 ~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K------------------AYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  134 HINRALAYLKQKSFAQAEEDCEAAIALDKLYVK------------------AYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH------------------HHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            467899999999999999999999999876654                  99999999999999999999999999999


Q ss_pred             CCchH
Q 035535           86 SSHFK   90 (518)
Q Consensus        86 p~~~k   90 (518)
                      |.+..
T Consensus       196 P~~~E  200 (536)
T KOG4648|consen  196 PKNIE  200 (536)
T ss_pred             cccHH
Confidence            98643

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.76  E-value=0.0047  Score=66.63  Aligned_cols=71  Identities=15%  Similarity=0.036  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|-.+...|++++|...|++|++++|+ ..                  +|..+|.++...|++++|++.+++|+.+
T Consensus       422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~------------------a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS-WL------------------NYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3455677778899999999999999999984 44                  8999999999999999999999999999


Q ss_pred             CCCchHHHHH
Q 035535           85 ESSHFKALLC   94 (518)
Q Consensus        85 ~p~~~ka~~~   94 (518)
                      +|.++..|..
T Consensus       483 ~P~~pt~~~~  492 (517)
T PRK10153        483 RPGENTLYWI  492 (517)
T ss_pred             CCCCchHHHH
Confidence            9998875443

>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]

Probab=96.74  E-value=0.00062  Score=73.34  Aligned_cols=58  Identities=33%  Similarity=0.653  Sum_probs=41.8

Q ss_pred             ccccCCCCCCceEE--eeCC------EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeec--CCCC
Q 035535          317 SFINHSCSPNARRV--HVGD------YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKC--KRCK  381 (518)
Q Consensus       317 s~~NHsC~PN~~~~--~~~~------~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C--~~C~  381 (518)
                      .++||||.||..+.  |.+.      -+.+++.+-|++|+|||..|....-..       ...-..|+|  ..|+
T Consensus      1191 RfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v-------~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1191 RFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQV-------ATKELTCHCGAENCR 1258 (1262)
T ss_pred             hhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecccccccc-------ccceEEEecChhhhh
Confidence            59999999999753  4432      467889999999999999997653222       123366777  4554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.73  E-value=0.0049  Score=44.55  Aligned_cols=39  Identities=28%  Similarity=0.372  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      .++.+|.+++++|+|.+|...++.+|+++|+|.++.--+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            677888888888888888888888888888887765443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.73  E-value=0.011  Score=57.12  Aligned_cols=75  Identities=16%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           58 LSNRAEARSRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        58 ~~nra~a~~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      .+|.|.-+++.|+|..|...|..-++.-|+.   +.|+|-+|.+++.+|+|++|...|..++ ..|+.+..-+.+-++-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            7899999999999999999999999998875   6799999999999999999999999999 7787776655544433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.63  E-value=0.014  Score=51.32  Aligned_cols=68  Identities=12%  Similarity=0.120  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESS---HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      .+++.|...++.|+|.+|++.++.....-|.   -.++.+.+|-+|+..++|++|+..+++.+ +.|.++..
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            7899999999999999999999999988764   46899999999999999999999999999 89988864

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.55  E-value=0.026  Score=60.30  Aligned_cols=102  Identities=8%  Similarity=-0.033  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      -|...++...-.++.++|+.+++++|...|....                  +|..+|+++-++++.+.|.+.|...++.
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K------------------l~lmlGQi~e~~~~ie~aR~aY~~G~k~  714 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHK------------------LWLMLGQIEEQMENIEMAREAYLQGTKK  714 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH------------------HHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence            3455566666788999999999999999999876                  9999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      -|.....|..++..-...|..-.|...|.++. ..|.+...
T Consensus       715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~l  755 (913)
T KOG0495|consen  715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALL  755 (913)
T ss_pred             CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchh
Confidence            99999999999999999999999999999999 77766544

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.033  Score=59.29  Aligned_cols=100  Identities=17%  Similarity=0.176  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      -+.+.+..+|+.++|..|++.|...+...|.+..+.            ..+-..-+++.||+++.+.+.|++.+.+|-+.
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~------------~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~  423 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSD------------RFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV  423 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhh------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            357788899999999999999999999888765411            11336778999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ||.++-.-+..-.+....+.-++|+.+..+..
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~  455 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK  455 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            99999888888899999999999999998877

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.53  E-value=0.026  Score=48.41  Aligned_cols=62  Identities=26%  Similarity=0.163  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                      .+---|.++..-|+.+.|++-+.++|.+-|.++.+|.++++++.-.|+.++|++++.+++..
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            45566888889999999999999999999999999999999999999999999999999943

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.0067  Score=60.25  Aligned_cols=89  Identities=11%  Similarity=0.079  Sum_probs=73.3

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535           11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK   90 (518)
Q Consensus        11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k   90 (518)
                      ..++...+|..|+...+-.+.++....+                 ..-.-+|.|++.+|+|++|+..++.+.+.+..+.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~-----------------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e   92 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEED-----------------SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE   92 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhH-----------------HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc
Confidence            4567788999999999888755433211                 14456799999999999999999999998877899


Q ss_pred             HHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           91 ALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        91 a~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .+.++|.+++-+|.|.+|...-.++-
T Consensus        93 l~vnLAcc~FyLg~Y~eA~~~~~ka~  118 (557)
T KOG3785|consen   93 LGVNLACCKFYLGQYIEAKSIAEKAP  118 (557)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999998777664

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.47  E-value=0.025  Score=62.37  Aligned_cols=92  Identities=15%  Similarity=0.137  Sum_probs=79.7

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535           11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK   90 (518)
Q Consensus        11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k   90 (518)
                      -.....++|.+|+....+.++..|+...                  +..--|..++++|++++|...++..-...+++..
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~------------------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~   78 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALY------------------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDL   78 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHH------------------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchH
Confidence            3456789999999999999999999765                  6777899999999999999666555556677888


Q ss_pred             HHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           91 ALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        91 a~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      .+-.+-.+|..++++++|..+|+++. ..|+
T Consensus        79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   79 TLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            88999999999999999999999999 7764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.39  E-value=0.025  Score=59.83  Aligned_cols=56  Identities=20%  Similarity=0.188  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFK  113 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~  113 (518)
                      ++.-.-.|+.++++|++|+.+.+.-....-.+.. .|.++.|.|++++.++|+.+++
T Consensus        48 a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrlnk~Dealk~~~  103 (652)
T KOG2376|consen   48 AIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYRLNKLDEALKTLK  103 (652)
T ss_pred             hHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHcccHHHHHHHHh
Confidence            4555566777788888887544443322222222 2677788888888888888877

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.39  E-value=0.0065  Score=39.15  Aligned_cols=30  Identities=33%  Similarity=0.533  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           90 KALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ++|+.+|.++..+|++++|+.+|++++ ..|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            689999999999999999999999999 665

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.081  Score=51.82  Aligned_cols=94  Identities=20%  Similarity=0.182  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH------
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDC------   78 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~------   78 (518)
                      .-..++..+...|++.+|...+..++...|....                  +..-++.||+..|+.+.|...+      
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~------------------~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSE------------------AKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccch------------------HHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            3456788899999999999999999999999866                  7788888888888875544322      


Q ss_pred             ----------------------------HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           79 ----------------------------EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        79 ----------------------------~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                                                  .+.+..||++..+-+.+|..|...|++++|++.+-..+
T Consensus       198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l  263 (304)
T COG3118         198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL  263 (304)
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                        22334489999999999999999999999999998877

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.22  E-value=0.12  Score=46.85  Aligned_cols=60  Identities=27%  Similarity=0.277  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHhccChHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGK-ILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~-al~~lg~~~~A~~~~~~al  116 (518)
                      .+.+.+..+..++++..++..+..++..++.........+. ++...++++.|...|.+++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (291)
T COG0457          97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL  157 (291)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444444444444444444444444444443333333333 4444444444444444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.20  E-value=0.016  Score=61.11  Aligned_cols=94  Identities=22%  Similarity=0.180  Sum_probs=83.7

Q ss_pred             hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHH
Q 035535           15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLC   94 (518)
Q Consensus        15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~   94 (518)
                      ..|+...|+.+...|+...|.....                 ...|+|.+.++-+-...|-..+.++|.++...+-.+|.
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v-----------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~  681 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDV-----------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS  681 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcc-----------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence            4688899999999999998876541                 57899999999999999999999999999888899999


Q ss_pred             HHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           95 KGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        95 ~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      +|.+++.+.+.+.|++.|+.|+ ++|+++...
T Consensus       682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~  713 (886)
T KOG4507|consen  682 LGNAYLALKNISGALEAFRQALKLTTKCPECE  713 (886)
T ss_pred             cchhHHHHhhhHHHHHHHHHHHhcCCCChhhH
Confidence            9999999999999999999999 887766543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=0.11  Score=47.96  Aligned_cols=96  Identities=17%  Similarity=0.129  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      ....+..++..+++++|+...+.++..-.+               ..+..++-.++|.+.+.+|.+++|+..++..-.  
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~D---------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--  154 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKD---------------ENLKALAALRLARVQLQQKKADAALKTLDTIKE--  154 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchh---------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--
Confidence            456778889999999999999999965322               223445888999999999999999987665322  


Q ss_pred             CCch-HHHHHHHHHHHhccChHHHHHHHHHHH-hc
Q 035535           86 SSHF-KALLCKGKILLSLNRYSMALDCFKETL-VD  118 (518)
Q Consensus        86 p~~~-ka~~~~g~al~~lg~~~~A~~~~~~al-~~  118 (518)
                      +.+. ..--.+|-++...|+-++|+..|++++ ..
T Consensus       155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            2222 224578999999999999999999999 44

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.11  E-value=0.081  Score=50.97  Aligned_cols=70  Identities=24%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhc----cCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHH
Q 035535           58 LSNRAEARSRL----RDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLET  127 (518)
Q Consensus        58 ~~nra~a~~~l----g~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~  127 (518)
                      +..+|.++.++    +++.+|.-.|+..-+.-|..+..+.-++.+...+++|++|...++.+| .++++|+...+
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N  246 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN  246 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence            44466666554    468889999999888677788999999999999999999999999999 77777654433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.08  E-value=0.011  Score=38.85  Aligned_cols=31  Identities=13%  Similarity=0.308  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQS   35 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~   35 (518)
                      .|.+.|+.+.+.|+|++|+.+|+++|.+..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4678999999999999999999998876544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.08  E-value=0.097  Score=47.59  Aligned_cols=93  Identities=26%  Similarity=0.406  Sum_probs=74.7

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-ch
Q 035535           12 ELLLREEWKESVQVYTQFIDLCQS-QITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS-HF   89 (518)
Q Consensus        12 ~~~~~g~~~~Ai~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~-~~   89 (518)
                      .++..|+++.|+..|.+++...|. ...                ...+..++..+...+++..|+..+.+++...+. ..
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  202 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNEL----------------AEALLALGALLEALGRYEEALELLEKALKLNPDDDA  202 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccch----------------HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccch
Confidence            788899999999999999886663 111                115566666688888999999999999999888 68


Q ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           90 KALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      ..+..++..+...++++.|...+.+++ ..|.
T Consensus       203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         203 EALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            888999999999999999999999888 5543

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]

Probab=96.00  E-value=0.0054  Score=65.29  Aligned_cols=43  Identities=40%  Similarity=0.529  Sum_probs=35.6

Q ss_pred             ccccccCCCCCCceEE---eeCC-EEEEEEcCCCCCCCeEEeecCCC
Q 035535          315 LASFINHSCSPNARRV---HVGD-YIIVHASRDVKAGEEITFAYFDM  357 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~---~~~~-~~~v~A~rdI~~Geeit~sY~~~  357 (518)
                      .+.+.|||-.|||...   +.|+ +|-|+|.|.|.+|||||+.|...
T Consensus       665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs  711 (739)
T KOG1079|consen  665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS  711 (739)
T ss_pred             hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence            3468999999999743   3354 89999999999999999999753

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.056  Score=51.91  Aligned_cols=67  Identities=22%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      .++-|.+.+|+-.++|..|...+++.+..||.++.+-.++|.|++-+|+..+|++.++.++ .+|...
T Consensus       253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            4788899999999999999999999999999999999999999999999999999999999 777544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.94  E-value=0.087  Score=51.47  Aligned_cols=87  Identities=18%  Similarity=0.136  Sum_probs=77.7

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHH
Q 035535           12 ELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKA   91 (518)
Q Consensus        12 ~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka   91 (518)
                      .+.+..+|.+||++.+--.+..|..-.                  .++-+|.||+...+|..|...+++.-.+.|...+-
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rA------------------gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY   80 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRA------------------GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY   80 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence            347888999999999988888886544                  78899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccChHHHHHHHHHHH
Q 035535           92 LLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        92 ~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .+.-++.++..+.|.+|+.......
T Consensus        81 rlY~AQSLY~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   81 RLYQAQSLYKACIYADALRVAFLLL  105 (459)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhc
Confidence            9999999999999999998876554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.88  E-value=0.051  Score=54.37  Aligned_cols=99  Identities=15%  Similarity=0.150  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +-..|+++...+.|+++++.|++|+.+..+..++            .+-..++..++..+-++++|++|+-...+|.++-
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~------------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv  192 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA------------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV  192 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc------------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence            4457999999999999999999999997665431            1112378899999999999999999999998873


Q ss_pred             CC----------chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           86 SS----------HFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        86 p~----------~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ..          +.-++|+++.+|..+|+..+|.++.+++.
T Consensus       193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~  233 (518)
T KOG1941|consen  193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM  233 (518)
T ss_pred             HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            22          23478999999999999999999999988

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.84  E-value=0.06  Score=57.54  Aligned_cols=96  Identities=20%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +...|..+..+|+.++|++.|++++.....              .++...++++.++-+++-+.+|++|..++.+..+.+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--------------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSE--------------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhh--------------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            456788888999999999999999853222              122334589999999999999999999999998865


Q ss_pred             CCchHHH--HHHHHHHHhccCh-------HHHHHHHHHHH
Q 035535           86 SSHFKAL--LCKGKILLSLNRY-------SMALDCFKETL  116 (518)
Q Consensus        86 p~~~ka~--~~~g~al~~lg~~-------~~A~~~~~~al  116 (518)
                      . +.+++  |..|.++..+++.       ++|.+.|+++-
T Consensus       336 ~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  336 K-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             c-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            4 45554  5678889999988       56666555554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.78  E-value=0.015  Score=36.91  Aligned_cols=29  Identities=21%  Similarity=0.323  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           91 ALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        91 a~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ++|++|.++..+|++++|++.|++++ ..|
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            56666677766667777777666666 444

>KOG1337 consensus N-methyltransferase [General function prediction only]

Probab=95.74  E-value=0.005  Score=65.89  Aligned_cols=62  Identities=27%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             ceeEeecccccccCCCCCCceEEee-CCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeE
Q 035535          308 YGLGLWALASFINHSCSPNARRVHV-GDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFH  374 (518)
Q Consensus       308 ~~~gl~~~~s~~NHsC~PN~~~~~~-~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~  374 (518)
                      .-.++.|...+.||+|.+....+.. +..+.+.+.++|.+||||+|+|++...     .+|+.+|||.
T Consensus       229 ~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~~N-----~eLL~~YGFv  291 (472)
T KOG1337|consen  229 DNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYGPKSN-----AELLLHYGFV  291 (472)
T ss_pred             cchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecCCCch-----HHHHHhcCCC
Confidence            3468999999999999993333332 348999999999999999999998432     2577899997

>smart00028 TPR Tetratricopeptide repeats

Probab=95.72  E-value=0.019  Score=35.18  Aligned_cols=31  Identities=39%  Similarity=0.539  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESS   87 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~   87 (518)
                      ++.++|.++..++++++|+..++++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            6888899999999999999999999988875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.62  E-value=0.1  Score=43.61  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=75.3

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-----------CHHHHHHH
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-----------DFDNALRD   77 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-----------~~~~Al~~   77 (518)
                      ++..+|.+|++-+|++..+..+...+++..+               ...+.--|.++.++.           -.-.|++.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~---------------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~   66 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS---------------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVEC   66 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch---------------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHH
Confidence            5678999999999999999999988776531               014555566655543           24578999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           78 CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +.++..+.|..+..+|.+|.=+-....|+++..-.+++|
T Consensus        67 ~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L  105 (111)
T PF04781_consen   67 FSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL  105 (111)
T ss_pred             HHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            999999999999999999999888889999999999888

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.57  E-value=0.018  Score=37.96  Aligned_cols=25  Identities=24%  Similarity=0.448  Sum_probs=12.4

Q ss_pred             HHHHHHHHHhccChHHHHHHHHHHH
Q 035535           92 LLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        92 ~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      |..+|.+|..+|+|++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555555555555555544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.52  E-value=0.26  Score=46.81  Aligned_cols=98  Identities=19%  Similarity=0.129  Sum_probs=70.9

Q ss_pred             hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-------HHHHHHHHHHHHhcCC-
Q 035535           15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-------FDNALRDCEQALKIES-   86 (518)
Q Consensus        15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-------~~~Al~~~~~al~l~p-   86 (518)
                      ....+++|++.|.-||-...-....           ....+.++..+|=.|..+|+       +..|++.+.+|++... 
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~-----------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~  157 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEK-----------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF  157 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            4457899999999998764322110           11233467777777777777       4567777777776542 


Q ss_pred             -----CchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCC
Q 035535           87 -----SHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASG  123 (518)
Q Consensus        87 -----~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~  123 (518)
                           +....+|.+|...+.+|++++|.+.|.+++..+..+.
T Consensus       158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence                 2367899999999999999999999999997765554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.47  E-value=0.15  Score=59.30  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +...|..+...|++++|...|.+++........            ......++.++|.+++..|++++|...+++++.+-
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDV------------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            344566666777777777777777766543221            00112366788888888999999988888888752


Q ss_pred             C--------CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           86 S--------SHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        86 p--------~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .        ...-.+..+|.+++..|++++|...+.+++
T Consensus       562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  600 (903)
T PRK04841        562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL  600 (903)
T ss_pred             HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            1        122345567888888899999988888887

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.47  E-value=0.026  Score=58.40  Aligned_cols=113  Identities=15%  Similarity=0.140  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHH-HHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQF-IDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~A-l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      +..+.-+.+..|..|+|..|....... |...|..    ..+|+      -.-|+++.|+|-++++++.|..+...+.+|
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~----~~T~q------~~~cif~NNlGcIh~~~~~y~~~~~~F~kA  309 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG----TITPQ------LSSCIFNNNLGCIHYQLGCYQASSVLFLKA  309 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCc----cccch------hhhheeecCcceEeeehhhHHHHHHHHHHH
Confidence            456677888999999999998876543 2222221    11221      134668899999999999999999999999


Q ss_pred             Hh---------cCC---------CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           82 LK---------IES---------SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        82 l~---------l~p---------~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      ++         +.|         .....+|+.|..|+..|+.-.|.+||.+++ ....+|--+
T Consensus       310 L~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW  372 (696)
T KOG2471|consen  310 LRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW  372 (696)
T ss_pred             HHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence            95         122         246789999999999999999999999999 554455443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.11  Score=49.55  Aligned_cols=71  Identities=20%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +.+....++..|+|-++++..+..|...|.+..                  +|+.||.++...=+..+|..|+.++|+++
T Consensus       233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvK------------------A~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK------------------AYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH------------------HHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            556778889999999999999999999999876                  99999999999999999999999999999


Q ss_pred             CCchHHHHH
Q 035535           86 SSHFKALLC   94 (518)
Q Consensus        86 p~~~ka~~~   94 (518)
                      |.-..+--+
T Consensus       295 pslasvVsr  303 (329)
T KOG0545|consen  295 PSLASVVSR  303 (329)
T ss_pred             hhhHHHHHH
Confidence            976555433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.39  E-value=0.12  Score=52.49  Aligned_cols=112  Identities=15%  Similarity=0.139  Sum_probs=81.5

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      ...+..+...|++++|.+...+++...-+..                     .-+=.-.++.+++..=++..++.++..|
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---------------------L~~~~~~l~~~d~~~l~k~~e~~l~~h~  325 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR---------------------LCRLIPRLRPGDPEPLIKAAEKWLKQHP  325 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhccChh---------------------HHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence            3456667889999999999999997642210                     1111234567888888888888888888


Q ss_pred             CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535           87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      +++-.++.+|..++..+.|.+|..+|+.++ ..| ...+...+...+.+..+.++
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~  379 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEE  379 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHH
Confidence            888888888999998899999988888888 444 33455666777766655443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.31  E-value=0.056  Score=52.91  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++-.+.|.-..+.|+.++|...++.|+.++|+++.++...|.....-++.-+|-++|-+|+ ..|.+++.
T Consensus       117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence            3566777888899999999999999999999999999999999999999999999999999 88877654

>PRK10941 hypothetical protein; Provisional

Probab=95.27  E-value=0.1  Score=51.33  Aligned_cols=76  Identities=11%  Similarity=0.086  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      -+.+.-..+.+.++|+.|+.+.+..+.+.|+++.                  -+--||.+|.++|.+..|+.|++.-++.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~------------------e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY------------------EIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            3456667889999999999999999999999876                  6778999999999999999999999999


Q ss_pred             CCCchHHHHHHHHH
Q 035535           85 ESSHFKALLCKGKI   98 (518)
Q Consensus        85 ~p~~~ka~~~~g~a   98 (518)
                      .|+.+.+-.-+.++
T Consensus       245 ~P~dp~a~~ik~ql  258 (269)
T PRK10941        245 CPEDPISEMIRAQI  258 (269)
T ss_pred             CCCchhHHHHHHHH
Confidence            99998876655444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.26  E-value=0.64  Score=44.14  Aligned_cols=106  Identities=15%  Similarity=0.137  Sum_probs=76.7

Q ss_pred             HHHHHHHhh-hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            8 SKATELLLR-EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         8 ~~Gn~~~~~-g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      ..|..+-.. .++++||.+|++|-+......+.   +..         ..++...|.--..+++|.+|+..++++....-
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~---ssA---------NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~  185 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV---SSA---------NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL  185 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh---hhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444444 68999999999999887655431   111         12677777777889999999999999876543


Q ss_pred             Cc------hHHH-HHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           87 SH------FKAL-LCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        87 ~~------~ka~-~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      +|      +|.| +..|.|++...+.-.|...+++.. .+|...+..
T Consensus       186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence            33      4554 456778888788888999999998 888877653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.21  E-value=0.055  Score=39.07  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           90 KALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ..+|.+|.+++.+|+|++|.++.+.+| ..|++.+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            357899999999999999999999999 77765543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.20  E-value=0.027  Score=35.73  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      +++++|.++.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            78999999999999999999999999999874

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.15  E-value=0.11  Score=45.97  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...+..+...|++++|+..+.+++..+|.+..                  +|..+-.+|..+|++.+|+..|++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~------------------~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEE------------------AYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH------------------HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            345667788888999999999999999999999866                  89999999999999999999888774


Q ss_pred             h
Q 035535           83 K   83 (518)
Q Consensus        83 ~   83 (518)
                      .
T Consensus       124 ~  124 (146)
T PF03704_consen  124 R  124 (146)
T ss_dssp             H
T ss_pred             H
Confidence            3

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.10  E-value=0.024  Score=58.78  Aligned_cols=76  Identities=22%  Similarity=0.173  Sum_probs=67.2

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      -+++.++++.++|..|+.-..+||+++|....                  +|+.+|.+.+++++|.+|+.+++....+.|
T Consensus        42 anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K------------------~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~P  103 (476)
T KOG0376|consen   42 ANRALAHLKVESFGGALHDALKAIELDPTYIK------------------AYVRRGTAVMALGEFKKALLDLEKVKKLAP  103 (476)
T ss_pred             chhhhhheeechhhhHHHHHHhhhhcCchhhh------------------eeeeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence            34667788999999999999999999998766                  999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHH
Q 035535           87 SHFKALLCKGKILL  100 (518)
Q Consensus        87 ~~~ka~~~~g~al~  100 (518)
                      +.+++.-....|-.
T Consensus       104 nd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen  104 NDPDATRKIDECNK  117 (476)
T ss_pred             CcHHHHHHHHHHHH
Confidence            99987765555543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.10  E-value=0.057  Score=52.86  Aligned_cols=75  Identities=13%  Similarity=0.138  Sum_probs=66.8

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      .+.+....+.|+.++|...|..|+.++|.++.                  ++...|+..-..++.-+|-..|-+||.++|
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~------------------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP  181 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ------------------ILIEMGQFREMHNEIVEADQCYVKALTISP  181 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHH------------------HHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence            34566677899999999999999999999987                  888889888888899999999999999999


Q ss_pred             CchHHHHHHHHHH
Q 035535           87 SHFKALLCKGKIL   99 (518)
Q Consensus        87 ~~~ka~~~~g~al   99 (518)
                      .|.+|+.++++..
T Consensus       182 ~nseALvnR~RT~  194 (472)
T KOG3824|consen  182 GNSEALVNRARTT  194 (472)
T ss_pred             CchHHHhhhhccc
Confidence            9999999887654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.01  E-value=0.03  Score=52.64  Aligned_cols=61  Identities=16%  Similarity=0.244  Sum_probs=55.9

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch
Q 035535           11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF   89 (518)
Q Consensus        11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~   89 (518)
                      ..+++.++.+.|.+.|.+|+.+.|....                  .|+..+.-..+.|+++.|.+.+++.+++||.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~------------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAA------------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhh------------------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3567889999999999999999998776                  899999999999999999999999999999763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.97  E-value=0.33  Score=44.73  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+..+|+-+.+.|++++|++.|.++.+.......               ....+++.-.+.+..+++..+.....+|-.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~---------------~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH---------------KIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            45678899999999999999999998876533211               122778888888889999999999888876


Q ss_pred             cC--CCch----HHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 IE--SSHF----KALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l~--p~~~----ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +-  +.++    +.-...|..++..++|..|.+.|-.+.
T Consensus       102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence            53  2222    223344677778889999998887776

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.93  E-value=0.13  Score=41.98  Aligned_cols=65  Identities=22%  Similarity=0.413  Sum_probs=49.4

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535           12 ELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus        12 ~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      ...+.|+|.+|++.+.+..+.........         ....+..+..|+|.++...|++++|+..+++|+++-
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~---------~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSS---------SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccch---------hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            35678999999999999998876554311         012344578889999999999999999999988773

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.91  E-value=0.39  Score=48.31  Aligned_cols=103  Identities=19%  Similarity=0.241  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI-   84 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l-   84 (518)
                      ....|..+-+.+||++|+-+-.+|.++......      +++.  ....+.+++.+|.++.++|+...|.+.|++|.++ 
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l------~d~~--~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL------KDWS--LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc------Cchh--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            345677788889999999999999998765432      1111  1123458999999999999999999999999887 


Q ss_pred             -----CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 -----ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 -----~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                           .|.+......+|-+|...|+.+.|..-|++|.
T Consensus       237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence                 24567778889999999999999999999998

>smart00028 TPR Tetratricopeptide repeats

Probab=94.91  E-value=0.039  Score=33.63  Aligned_cols=30  Identities=33%  Similarity=0.582  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           90 KALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      .+++++|.++..++++++|..+|++++ ..|
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            578999999999999999999999998 554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.87  E-value=0.17  Score=48.77  Aligned_cols=68  Identities=13%  Similarity=0.112  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      -+++-|...++-|+|++|+..++.+....|..   .++.+.++.+++..++|++|+..+++.+ +.|++++.
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            78999999999999999999999999988754   6899999999999999999999999999 88887764

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.80  E-value=0.37  Score=56.59  Aligned_cols=94  Identities=7%  Similarity=0.006  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHH----hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDL----CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE   79 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~   79 (518)
                      ..+....+.+.+.|++++|.+.|.+....    .|+..                   .|..+-.+|.+.|++++|++.++
T Consensus       543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-------------------TynaLI~ay~k~G~ldeA~elf~  603 (1060)
T PLN03218        543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-------------------TVGALMKACANAGQVDRAKEVYQ  603 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-------------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence            34556667777778888888888777653    33321                   45556666777777777777777


Q ss_pred             HHHhcC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           80 QALKIE-SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        80 ~al~l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .+.+.+ +.+...|..+..+|...|++++|++.|++..
T Consensus       604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            777665 3455666667777777777777777777666

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.76  E-value=0.36  Score=56.62  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIE-SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .|..+..++.+.|++++|++.++.+.+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            34444444455555555555555544432 2234444455555555555555555555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.75  E-value=0.24  Score=57.46  Aligned_cols=97  Identities=14%  Similarity=0.069  Sum_probs=77.5

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      ...|..++..|++++|...+.+++...+....             .....++.++|.++...|++++|...+++++....
T Consensus       456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~  522 (903)
T PRK04841        456 ALRAQVAINDGDPEEAERLAELALAELPLTWY-------------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR  522 (903)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            34677888999999999999999986543211             01123678899999999999999999999997632


Q ss_pred             C------chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           87 S------HFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        87 ~------~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .      ...++..+|.+++..|++++|...+++++
T Consensus       523 ~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  558 (903)
T PRK04841        523 QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAF  558 (903)
T ss_pred             hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            1      13467788999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.74  E-value=0.13  Score=57.93  Aligned_cols=119  Identities=6%  Similarity=-0.025  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...-+.+.+.|+.++|.+.|+...+..+-.+.     .           ..|..+..++.+.|++++|.+.+++. ..
T Consensus       428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-----~-----------~~y~~li~~l~r~G~~~eA~~~~~~~-~~  490 (697)
T PLN03081        428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-----A-----------MHYACMIELLGREGLLDEAYAMIRRA-PF  490 (697)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-----c-----------cchHhHHHHHHhcCCHHHHHHHHHHC-CC
Confidence            4556677888999999999999998864333222     0           16788889999999999999988764 34


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      .| +...|..+..++...|+++.|...+++.+ ..|++......+...+.+.++.++.
T Consensus       491 ~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        491 KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence            45 45678899999999999999999999999 7887777777777777777776654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.67  E-value=1.1  Score=41.23  Aligned_cols=97  Identities=12%  Similarity=0.068  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ..-+..+++..|..+++.+|....+...+..|..-+     |+           ...-.|.++..+|++.+|...++.++
T Consensus       124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~-----pd-----------~~Ll~aR~laa~g~~a~Aesafe~a~  187 (251)
T COG4700         124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS-----PD-----------GHLLFARTLAAQGKYADAESAFEVAI  187 (251)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC-----CC-----------chHHHHHHHHhcCCchhHHHHHHHHH
Confidence            456778899999999999999999999998876543     22           45566778889999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ..-| .+.+..+.+.-+..+|+-++|...+....
T Consensus       188 ~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         188 SYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            9988 45666777888999999988887776554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.29  Score=48.66  Aligned_cols=66  Identities=18%  Similarity=0.310  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      --+.+++-+.+-.|+|..|+.-.++|+.++|.+..                  +++.-|.|++.+.+|.+|+.+|+..++
T Consensus       120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K------------------a~~R~Akc~~eLe~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK------------------AYIRGAKCLLELERFAEAVNWCEEGLQ  181 (390)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh------------------hhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence            34667888888999999999999999999999987                  999999999999999999999999988


Q ss_pred             cCCC
Q 035535           84 IESS   87 (518)
Q Consensus        84 l~p~   87 (518)
                      ++-.
T Consensus       182 ~d~e  185 (390)
T KOG0551|consen  182 IDDE  185 (390)
T ss_pred             hhHH
Confidence            7643

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.61  E-value=0.35  Score=39.20  Aligned_cols=41  Identities=27%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           76 RDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        76 ~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ..++++++.+|++..+.|.+|..+...|+|++|++.+-.++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v   49 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV   49 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.48  E-value=1.1  Score=43.36  Aligned_cols=60  Identities=18%  Similarity=0.136  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .+...|.|++.+++|++|....+.||.-+++++..+-++-.+-..+|.-.++...+-.-+
T Consensus       209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  209 LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            677899999999999999999999999999999999999999999999988887776666

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=0.25  Score=48.01  Aligned_cols=83  Identities=22%  Similarity=0.185  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           53 SLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        53 ~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      .+.....|+=.++...++++.|+...++.+.++|.++.-+--+|.+|.++|.+.-|++++...+ ..|+++.. ..+...
T Consensus       179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a-~~ir~~  257 (269)
T COG2912         179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA-EMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH-HHHHHH
Confidence            3444677888899999999999999999999999999999999999999999999999999988 77765543 445544


Q ss_pred             HHHHH
Q 035535          132 LEKSK  136 (518)
Q Consensus       132 l~~~~  136 (518)
                      +.+++
T Consensus       258 l~~l~  262 (269)
T COG2912         258 LLELR  262 (269)
T ss_pred             HHHHH
Confidence            44433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.19  E-value=0.76  Score=43.96  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH---
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL---   82 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al---   82 (518)
                      -..++-...+.-+.++|++.|++++.+......            .++-.-.+...+.++.++..|.+|-..+.+-.   
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~~dr------------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~  180 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDR------------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA  180 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch------------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence            344555666777788888888888887654322            11222367788888999999998877666543   


Q ss_pred             -hcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHHhccc
Q 035535           83 -KIE--SSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQ  120 (518)
Q Consensus        83 -~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~  120 (518)
                       +.+  |+-.+++...-.+++...+|..|..+|+..-..|+
T Consensus       181 ~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~  221 (308)
T KOG1585|consen  181 DKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA  221 (308)
T ss_pred             HHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence             333  34456666666667777899999999998775554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.15  E-value=1  Score=45.82  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +....+.|-.-+-.|+|.+|.....++-+..+...                  ++|.--|.+--++|+++.|=.+..++-
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~------------------l~~l~aA~AA~qrgd~~~an~yL~eaa  145 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV------------------LAYLLAAEAAQQRGDEDRANRYLAEAA  145 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH------------------HHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence            44556678888889999999999888654433221                  277778888889999999999999999


Q ss_pred             hcCC-CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           83 KIES-SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        83 ~l~p-~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +..+ +....+..++..+...|+|..|.....+++ ..|.++.
T Consensus       146 e~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~  188 (400)
T COG3071         146 ELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPE  188 (400)
T ss_pred             ccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH
Confidence            9943 345667888999999999999999999998 6665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.15  E-value=0.49  Score=47.47  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=45.4

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        60 nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      .+|.+++..-.|.+|++.+.+++.-+|.....-..+|.||+.+.-|+-+.+.+.-.+ ..|+
T Consensus       156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence            344455555568888888888888888777766778888888888888888887777 5553

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.12  E-value=0.06  Score=51.70  Aligned_cols=66  Identities=20%  Similarity=0.255  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      -.++.+-.+..+++|..|...|++.+..+|.++.                  +-.|.|.|++-+|+..+|++..+.+++.
T Consensus       254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~------------------a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV------------------ANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             HHhhhhhheecccchHHHHHHHhhccccCCCchh------------------hhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3566677778899999999999999999999876                  8899999999999999999999999999


Q ss_pred             CCCc
Q 035535           85 ESSH   88 (518)
Q Consensus        85 ~p~~   88 (518)
                      +|..
T Consensus       316 ~P~~  319 (366)
T KOG2796|consen  316 DPRH  319 (366)
T ss_pred             CCcc
Confidence            9975

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.09  E-value=0.58  Score=52.82  Aligned_cols=97  Identities=6%  Similarity=-0.029  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLC--QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ..|......+.+.|++++|++.|++.+...  |+..                   .|..+-.++.+.|..++|.+.++..
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-------------------T~~~ll~a~~~~g~~~~a~~~f~~m  452 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-------------------TFLAVLSACRYSGLSEQGWEIFQSM  452 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-------------------HHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            357778889999999999999999988643  3321                   6778888999999999999999999


Q ss_pred             HhcCC--CchHHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535           82 LKIES--SHFKALLCKGKILLSLNRYSMALDCFKETLVDA  119 (518)
Q Consensus        82 l~l~p--~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p  119 (518)
                      .+..+  .+...|..+..+|...|++++|.+.+++.-..|
T Consensus       453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p  492 (697)
T PLN03081        453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP  492 (697)
T ss_pred             HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC
Confidence            76422  245678899999999999999999988764433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.07  E-value=0.059  Score=51.09  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=55.2

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        60 nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      .-+..++.-.+|..|+..+.+||.++|+.+..|.+++.+++.+.+++.+..+.++|+ ++|+
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N   76 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN   76 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence            345667777899999999999999999999999999999999999999999999999 7764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.05  E-value=0.43  Score=47.40  Aligned_cols=98  Identities=15%  Similarity=0.005  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHh
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR-LRDFDNALRDCEQALK   83 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~-lg~~~~Al~~~~~al~   83 (518)
                      .|....+..-+.+..+.|-..|.+|+...+....                  +|...|..-++ .++.+.|...++.+++
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~------------------vy~~~A~~E~~~~~d~~~A~~Ife~glk   64 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH------------------VYVAYALMEYYCNKDPKRARKIFERGLK   64 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH------------------HHHHHHHHHHHTCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            3556667777778899999999999843333333                  78888888666 4666669999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      .-|.+...|..-..-+..+++.+.|...|++++ ..|.
T Consensus        65 ~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   65 KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPK  102 (280)
T ss_dssp             HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred             HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999 5543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.90  E-value=0.25  Score=40.04  Aligned_cols=58  Identities=16%  Similarity=0.010  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccChHHHHHHHH
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESSH--FKALLCKGKILLSLNRYSMALDCFK  113 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~--~ka~~~~g~al~~lg~~~~A~~~~~  113 (518)
                      .+.+.+|..++..|++++|++.+-.+++.++++  ..+.-.+-.++..+|.-+.-...|+
T Consensus        23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R   82 (90)
T PF14561_consen   23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence            488999999999999999999999999999877  4444444445555554443333333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=2.9  Score=40.16  Aligned_cols=97  Identities=12%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI---   84 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l---   84 (518)
                      .-++.+-..++|++|-.+..+|++...++.+     +=+.       +-+|-..+...-.+..+.++...+++|..+   
T Consensus        36 kAAvafRnAk~feKakdcLlkA~~~yEnnrs-----lfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRS-----LFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhccc-----HHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3445555677899999988888876555432     0011       115566666777788999999999999876   


Q ss_pred             --CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 --ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 --~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                        .|+-+-.-.-++--....-+.++|++.|++++
T Consensus       104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqral  137 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRAL  137 (308)
T ss_pred             hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence              34444444444444556678999999999998

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.76  E-value=0.42  Score=37.34  Aligned_cols=67  Identities=16%  Similarity=0.153  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +....++|-.+|.+.+.++|+..++++++..++.+.               .-.++.-+..+|...|+|.+.++++.+=+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~---------------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED---------------RFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678999999999999999999999998776432               22377788899999999999999877655


Q ss_pred             hc
Q 035535           83 KI   84 (518)
Q Consensus        83 ~l   84 (518)
                      ++
T Consensus        71 ~~   72 (80)
T PF10579_consen   71 EI   72 (80)
T ss_pred             HH
Confidence            54

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=1.5  Score=41.64  Aligned_cols=92  Identities=24%  Similarity=0.238  Sum_probs=57.3

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcC------
Q 035535           13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR-LRDFDNALRDCEQALKIE------   85 (518)
Q Consensus        13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~-lg~~~~Al~~~~~al~l~------   85 (518)
                      .|++++..+|+.+..++|++..+...-            ++-+-.+..+|..|-. +.++++|+..|++|-+.-      
T Consensus        83 cykk~~~~eAv~cL~~aieIyt~~Grf------------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~  150 (288)
T KOG1586|consen   83 CYKKVDPEEAVNCLEKAIEIYTDMGRF------------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV  150 (288)
T ss_pred             HhhccChHHHHHHHHHHHHHHHhhhHH------------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence            345566777777777777765543220            0011134455666644 377888888888887652      


Q ss_pred             CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ..--|.+..-+.--..+++|.+|+..|++..
T Consensus       151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2224566666666677888888888888877

>PLN03077 Protein ECB2; Provisional

Probab=93.49  E-value=0.36  Score=55.85  Aligned_cols=117  Identities=6%  Similarity=-0.057  Sum_probs=90.8

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      ...-..+.+.|++++|...|+...+..+-.+.     .           ..|..+..++.+.|++++|.+.+++. .+.|
T Consensus       593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-----~-----------~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p  655 (857)
T PLN03077        593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-----L-----------KHYACVVDLLGRAGKLTEAYNFINKM-PITP  655 (857)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-----h-----------HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC
Confidence            33445678899999999999999855443332     1           17888999999999999999999875 4566


Q ss_pred             CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      + +..|-.+-.++..-++.+.|....++++ ..|+++.....+..++...++.++.
T Consensus       656 d-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a  710 (857)
T PLN03077        656 D-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV  710 (857)
T ss_pred             C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence            4 5667777778888899999999999999 8898888877777777766665543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.45  E-value=0.23  Score=52.73  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=83.5

Q ss_pred             HHHHHHH-hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            8 SKATELL-LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         8 ~~Gn~~~-~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      ..+..|+ .+|+..+|+.+|..|+-..|....                -+++..+|.++.+.|...+|--.+..|+.--|
T Consensus       217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k----------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~  280 (886)
T KOG4507|consen  217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNK----------------DIALLSLATVLHRAGFSADAAVILHAALDDAD  280 (886)
T ss_pred             HHHHHHHHHcCChhhhhHHHHHHhhhCCcccc----------------cchhhhHHHHHHHcccccchhheeehhccCCc
Confidence            3444444 478999999999999999887654                13788999999999999999888888888878


Q ss_pred             CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ....-+|-+|.++..++.|.....+|..+. ..|...+.
T Consensus       281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~  319 (886)
T KOG4507|consen  281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQA  319 (886)
T ss_pred             cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence            777779999999999999999999999998 66554433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.36  E-value=0.52  Score=49.44  Aligned_cols=62  Identities=18%  Similarity=0.123  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535           54 LCLALSNRAEARSRLRDFDNALRDCEQALKIESS--HFKALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        54 l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~--~~ka~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      +.-+...+|.|..++|+.++|++.+...++..|.  +...++++-.+|+.++.|.++...+.+.
T Consensus       258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3345667888888889999999988888877664  5668888888889999888888777764

The molecular function of this protein is uncertain.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.27  E-value=0.12  Score=48.69  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=54.0

Q ss_pred             HHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           64 ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        64 a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ...+.++.+.|.+.+.+|+++-|.+...|+|+|......|+++.|.+.|++.+ ++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            45567899999999999999999999999999999999999999999999999 777554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.99  E-value=0.097  Score=54.34  Aligned_cols=94  Identities=9%  Similarity=-0.039  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHH-HhhcccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            6 LRSKATELLLREEWKESVQVYTQFID-LCQSQITETKQEASQLSKLK-KSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~-~~p~~~~~~~~~~~~~~~~~-~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      |.+.|-++|+.|.|..++.+|.+||+ .+..-..  ...+...+.+. .-.+.+++|.|..|+..|++-.|.+.+.++..
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~  363 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN--GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH  363 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc--cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence            56789999999999999999999996 2211100  00000000000 00123899999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHh
Q 035535           84 IESSHFKALLCKGKILLS  101 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~  101 (518)
                      .--.+|..|.|+|.|...
T Consensus       364 vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  364 VFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHhcCcHHHHHHHHHHHH
Confidence            988899999999988754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.87  E-value=0.19  Score=33.52  Aligned_cols=28  Identities=39%  Similarity=0.430  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      ++.|+|.+|..+|+|++|+..+++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            6778888888888888888888887765

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.86  E-value=4.1  Score=36.61  Aligned_cols=111  Identities=14%  Similarity=-0.033  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.+........++.+++...+...-.+.|..+.                  +-.--|..++..|+|.+|+..++.+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e------------------~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE------------------LDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH------------------HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            345677778888889999999999888788888876                  66667888999999999999999998


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFL  132 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l  132 (518)
                      +-.|..+-+--.++.|++.+++.+-=.. -.+++..+.++.....+..++
T Consensus        72 ~~~~~~p~~kALlA~CL~~~~D~~Wr~~-A~evle~~~d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   72 ERAPGFPYAKALLALCLYALGDPSWRRY-ADEVLESGADPDARALVRALL  120 (160)
T ss_pred             ccCCCChHHHHHHHHHHHHcCChHHHHH-HHHHHhcCCChHHHHHHHHHH
Confidence            8888888666677899999998875332 334554443555433333333

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.72  E-value=4.1  Score=40.32  Aligned_cols=133  Identities=15%  Similarity=0.086  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH---HHHHH
Q 035535            3 MQQLRSKATELLLRE-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDN---ALRDC   78 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~---Al~~~   78 (518)
                      +..+.+-|..+++++ +|++|+...++|+++..........+++    ...+...++..++.+|+..+.++.   |....
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~----~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l  110 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD----GSELRLSILRLLANAYLEWDTYESVEKALNAL  110 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc----HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            456788999999999 9999999999999996431110111111    222344588889999999887654   33333


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHH
Q 035535           79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        79 ~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      +.+-.--|+.+..++-.=.++...++.+++.+.+.+.+...+.++  ..+...+...+++.+.
T Consensus       111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e--~~~~~~l~~i~~l~~~  171 (278)
T PF08631_consen  111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE--SNFDSILHHIKQLAEK  171 (278)
T ss_pred             HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc--chHHHHHHHHHHHHhh
Confidence            333334577777776666777778999999999999995433232  2344445555554433

It is also involved in sporulation [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.65  E-value=1  Score=36.70  Aligned_cols=69  Identities=20%  Similarity=0.228  Sum_probs=50.0

Q ss_pred             HHhccCHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHH
Q 035535           65 RSRLRDFDNALRDCEQALKIES---------SHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLE  133 (518)
Q Consensus        65 ~~~lg~~~~Al~~~~~al~l~p---------~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~  133 (518)
                      .++.++|.+|++.+.+.+..-.         ...-++..+|.++...|++++|+..+++++..-....+...+...+.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            4678999999998888886532         13467889999999999999999999999933222333344444433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.35  E-value=0.78  Score=45.20  Aligned_cols=67  Identities=21%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           50 LKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        50 ~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +......++..++..+...++++.++...++.+.++|-+.++|.++-.+|+..|+...|+..|++.-
T Consensus       148 l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         148 LEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            4555677899999999999999999999999999999999999999999999999999999999876

>PLN03077 Protein ECB2; Provisional

Probab=92.31  E-value=2  Score=49.74  Aligned_cols=97  Identities=10%  Similarity=0.116  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHH--hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDL--CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ   80 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~   80 (518)
                      ...|......+.+.|+.++|++.|++..+.  .|+..                   .|..+-.++.+.|.+++|++.++.
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-------------------T~~~ll~a~~~~g~v~ea~~~f~~  614 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-------------------TFISLLCACSRSGMVTQGLEYFHS  614 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-------------------cHHHHHHHHhhcChHHHHHHHHHH
Confidence            345888889999999999999999998864  34432                   455566778899999999999999


Q ss_pred             HHhc---CCCchHHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535           81 ALKI---ESSHFKALLCKGKILLSLNRYSMALDCFKETLVDA  119 (518)
Q Consensus        81 al~l---~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p  119 (518)
                      ..+.   .| +...|..+..+|.+.|++++|.+.+++.-..|
T Consensus       615 M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p  655 (857)
T PLN03077        615 MEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITP  655 (857)
T ss_pred             HHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence            8843   34 56789999999999999999999998864444

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=92.24  E-value=1.2  Score=37.81  Aligned_cols=83  Identities=17%  Similarity=0.103  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH--
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA--   81 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a--   81 (518)
                      +.+...|+.+++.+++-.||-+|++|+.+..+...   .+..+.+++.-.......|+|.-+..+|+.+-.+++++-|  
T Consensus         2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~---~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE   78 (140)
T PF10952_consen    2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDE---SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE   78 (140)
T ss_pred             hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc---cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence            45678999999999999999999999998765432   1122334444455667889999999999999999987655  


Q ss_pred             --HhcCCCch
Q 035535           82 --LKIESSHF   89 (518)
Q Consensus        82 --l~l~p~~~   89 (518)
                        +.+-|.-+
T Consensus        79 ~VltLiPQCp   88 (140)
T PF10952_consen   79 KVLTLIPQCP   88 (140)
T ss_pred             HHHHhccCCC
Confidence              44555543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.10  E-value=1.8  Score=36.75  Aligned_cols=70  Identities=17%  Similarity=0.078  Sum_probs=53.2

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .++..+...|+|++++..-.+||.+.....+.+       ++-.++...+-++||.++-.+|+.++|+..++.+-++
T Consensus        60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-------qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   60 GLSGALAGLGRYDECLQSADRALRYFNRRGELH-------QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-------STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-------cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            456677889999999999999999876554322       2233456678999999999999999999999988664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.08  E-value=0.99  Score=45.08  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhccc
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQI   37 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~   37 (518)
                      +.....+..++.+|++.+|...+.+.|+-.|.+.
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl  137 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL  137 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhh
Confidence            4556677888999999999999999999888764

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.00  E-value=1.3  Score=44.20  Aligned_cols=52  Identities=19%  Similarity=0.137  Sum_probs=25.8

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHH
Q 035535           61 RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCF  112 (518)
Q Consensus        61 ra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~  112 (518)
                      .|.++...|-|++|.+.+++|+++||.+.-+...++.++...+++.++.+..
T Consensus       181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM  232 (491)
T KOG2610|consen  181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM  232 (491)
T ss_pred             HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence            4444444555555555555555555555444444555555555555544443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.95  E-value=1.4  Score=46.40  Aligned_cols=92  Identities=13%  Similarity=0.046  Sum_probs=63.5

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHH-----HHhccCHHHHHHHHHHHHhc
Q 035535           10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEA-----RSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus        10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a-----~~~lg~~~~Al~~~~~al~l   84 (518)
                      -..+.+..+.+.-|+.-.+||+++|+.+.                  +|.-+|.=     .-...-|.+|++..+..+..
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAd------------------AYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~  236 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCAD------------------AYILLAEEEASTIVEAEELLRQAVKAGEASLGK  236 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhH------------------HHhhcccccccCHHHHHHHHHHHHHHHHHhhch
Confidence            45567888999999999999999998765                  44444431     11222244455555544443


Q ss_pred             CC----------------C--chHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           85 ES----------------S--HFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        85 ~p----------------~--~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      +.                .  ..-+..++|.+...+|+.++|++.|+..+ ..|
T Consensus       237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p  290 (539)
T PF04184_consen  237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP  290 (539)
T ss_pred             hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence            21                1  13455789999999999999999999999 455

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.72  E-value=0.79  Score=49.04  Aligned_cols=85  Identities=12%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC----chHH
Q 035535           16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS----HFKA   91 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~----~~ka   91 (518)
                      ..+.+.|.+.........|+..-                  .++..|..+...|+.++|++.+++++.....    +.-.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~l------------------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~  307 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSAL------------------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLC  307 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHH
Confidence            44567788888888888887654                  8899999999999999999999999965443    3346


Q ss_pred             HHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           92 LLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        92 ~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                      +|.+|.++..+++|++|.++|.+....
T Consensus       308 ~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  308 YFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            899999999999999999999998854

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.65  E-value=0.89  Score=47.40  Aligned_cols=128  Identities=12%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD---FDNALRDCEQ   80 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~---~~~Al~~~~~   80 (518)
                      ....+.|..++..|+|.+|+..|+..|...|-...   .+.++..+.++++.++.--.-...+.+.+   .+...++.++
T Consensus       205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv---~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR  281 (422)
T PF06957_consen  205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVV---ESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR  281 (422)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--B---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeee---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence            34456899999999999999999999998876544   23334444555554443333333333221   1122233333


Q ss_pred             HH---------hcCCCchHHHHHHHHH-HHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           81 AL---------KIESSHFKALLCKGKI-LLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        81 al---------~l~p~~~ka~~~~g~a-l~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      .+         ++.|.|...-+|.|.. .++.++|..|...-++.| +.|. +...+..++++..|
T Consensus       282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~-~~~a~qArKil~~~  346 (422)
T PF06957_consen  282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS-PEVAEQARKILQAC  346 (422)
T ss_dssp             HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence            33         3466666655566554 468899999999999999 6552 22223344444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.58  E-value=1.6  Score=45.47  Aligned_cols=91  Identities=16%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch
Q 035535           10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF   89 (518)
Q Consensus        10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~   89 (518)
                      +.-..++.+...|....-.||..+|.+.                   ++-..-..-+++++|+.+-..+++-|+.+|.+-
T Consensus       411 A~feIRq~~l~~ARkiLG~AIG~cPK~K-------------------lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c  471 (677)
T KOG1915|consen  411 AQFEIRQLNLTGARKILGNAIGKCPKDK-------------------LFKGYIELELQLREFDRCRKLYEKFLEFSPENC  471 (677)
T ss_pred             HHHHHHHcccHHHHHHHHHHhccCCchh-------------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence            3333444555555555555555555432                   222333445667888888888888888888888


Q ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535           90 KALLCKGKILLSLNRYSMALDCFKETLVDA  119 (518)
Q Consensus        90 ka~~~~g~al~~lg~~~~A~~~~~~al~~p  119 (518)
                      .+|...|..-..||+.+.|...|.-|+..|
T Consensus       472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  472 YAWSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            888888888888899998888888888554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.34  E-value=0.44  Score=31.65  Aligned_cols=33  Identities=9%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQS   35 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~   35 (518)
                      +..+.+.|..+...|+|++|+.++.+++.+...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            567889999999999999999999999987543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.11  E-value=5.1  Score=41.98  Aligned_cols=99  Identities=16%  Similarity=0.048  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..|...|.=-..++++..|...|.+||..+..+..                  +|...+.+-++......|-...++|+
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~it------------------LWlkYae~Emknk~vNhARNv~dRAv  134 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNIT------------------LWLKYAEFEMKNKQVNHARNVWDRAV  134 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch------------------HHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence            345555666666788999999999999998877665                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      .+-|.--+.||..-..-..+|+..-|.+.|++=+ -.|
T Consensus       135 t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P  172 (677)
T KOG1915|consen  135 TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP  172 (677)
T ss_pred             HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC
Confidence            9999999999988888889999999999999988 555

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.79  E-value=3.5  Score=41.83  Aligned_cols=98  Identities=19%  Similarity=0.079  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhccc-chh-hhh--------------hHHHHHHHHHHHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQI-TET-KQE--------------ASQLSKLKKSLCLALSNRAEARSRL   68 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~-~~~-~~~--------------~~~~~~~~~~l~~~~~nra~a~~~l   68 (518)
                      -..+.+..+...|+..+|+......+....... .+. ...              ...........+.++.-+|.-...+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            345677888899999999999988887222211 000 000              0001112233445777888877777


Q ss_pred             ------cCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 035535           69 ------RDFDNALRDCEQALKIESSHFKALLCKGKILLSL  102 (518)
Q Consensus        69 ------g~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~l  102 (518)
                            +.+++++..+..|++++|++.++|+..|..+..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                  8899999999999999999999999999887755

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.32  E-value=2  Score=49.46  Aligned_cols=99  Identities=14%  Similarity=0.106  Sum_probs=78.3

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-------cCHHHHHHHHHHHH
Q 035535           10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-------RDFDNALRDCEQAL   82 (518)
Q Consensus        10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-------g~~~~Al~~~~~al   82 (518)
                      .++++..+.|++|+..|++.-...|...+.               ..+.+..|.+.+..       ..|.+|+..+++. 
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  545 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEG---------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-  545 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccc---------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-
Confidence            467788999999999999999998876541               11677777776653       2477777777663 


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      .-.|.-+--|.-+|.+|..+|+|++-+++|.-|+ ..|++|.-
T Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        546 HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            4456677789999999999999999999999999 88888865

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.17  E-value=1.3  Score=38.49  Aligned_cols=76  Identities=21%  Similarity=0.163  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcc---CHHHHHHHHHHHHh-cCCC-chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535           57 ALSNRAEARSRLR---DFDNALRDCEQALK-IESS-HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG  130 (518)
Q Consensus        57 ~~~nra~a~~~lg---~~~~Al~~~~~al~-l~p~-~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~  130 (518)
                      ..+|+|-++.+..   +-.+.+..++..++ -+|. .-..+|.++..++++++|+.|+++.+..+ ..|++++. ..+.+
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa-~~Lk~  112 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA-LELKE  112 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH-HHHHH
Confidence            5677777777765   45677888888886 4443 34577889999999999999999999888 67665544 33444


Q ss_pred             HHH
Q 035535          131 FLE  133 (518)
Q Consensus       131 ~l~  133 (518)
                      .++
T Consensus       113 ~ie  115 (149)
T KOG3364|consen  113 TIE  115 (149)
T ss_pred             HHH
Confidence            443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=90.15  E-value=2.8  Score=49.16  Aligned_cols=93  Identities=12%  Similarity=0.009  Sum_probs=60.5

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--
Q 035535           10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS--   87 (518)
Q Consensus        10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~--   87 (518)
                      ...|-+.+++++|.++|++-+....+...                  .|...+..+++.++-++|...+.+||+.=|.  
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~------------------vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRK------------------VWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcchhh------------------HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence            34445556666666666666665443222                  6777777777777777777777777777665  


Q ss_pred             chHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           88 HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      |.+..-..|..-+..|+.+.+...|+-.+ ..|.
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence            66666666777777777777777777666 4443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.93  E-value=5.4  Score=39.47  Aligned_cols=90  Identities=12%  Similarity=0.185  Sum_probs=68.2

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhc----CC-
Q 035535           13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQALKI----ES-   86 (518)
Q Consensus        13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al~l----~p-   86 (518)
                      +.++|+++.|...|.|+=...+ ...     |+    ....++..++|.|...++.+ +|+.|+..+++|.++    .+ 
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~-~~~-----~~----~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLN-SLD-----PD----MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHh-cCC-----cH----HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence            4678999999999999987764 111     11    23456779999999999999 999999999999987    22 


Q ss_pred             --C-------chHHHHHHHHHHHhccChHHHHHHH
Q 035535           87 --S-------HFKALLCKGKILLSLNRYSMALDCF  112 (518)
Q Consensus        87 --~-------~~ka~~~~g~al~~lg~~~~A~~~~  112 (518)
                        .       ..+.+..++.+|+..+.++...++.
T Consensus        73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~  107 (278)
T PF08631_consen   73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKAL  107 (278)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence              1       2456777888999888876554433

It is also involved in sporulation [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.00  E-value=3  Score=36.26  Aligned_cols=39  Identities=28%  Similarity=0.359  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      +.+-+|..+.++++|+.++.+++..++.+|+|.++.--+
T Consensus        73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            567789999999999999999999999999998876433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.90  E-value=0.18  Score=50.24  Aligned_cols=57  Identities=12%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           65 RSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        65 ~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      .+..|++++|++.+..||+++|.....|-.+|.+++.+++...|++++..++ +.|+.
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS  181 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence            4557889999999999999999999999999999999999999999999999 55543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=88.79  E-value=4.9  Score=42.37  Aligned_cols=87  Identities=9%  Similarity=0.075  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 035535           21 ESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILL  100 (518)
Q Consensus        21 ~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~  100 (518)
                      .-...|++|+...+.+..                  +|++...-.-+.+.+.+--..|.+++..+|+++..|..-|.=.+
T Consensus        89 rIv~lyr~at~rf~~D~~------------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wef  150 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVK------------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEF  150 (568)
T ss_pred             HHHHHHHHHHHhcCCCHH------------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHH
Confidence            346678888888877655                  78877766666777999999999999999999999999998888


Q ss_pred             hccC-hHHHHHHHHHHH-hccccCCcH
Q 035535          101 SLNR-YSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus       101 ~lg~-~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      ..+. .+.|.+.|.+++ ..|+.|.-+
T Consensus       151 e~n~ni~saRalflrgLR~npdsp~Lw  177 (568)
T KOG2396|consen  151 EINLNIESARALFLRGLRFNPDSPKLW  177 (568)
T ss_pred             hhccchHHHHHHHHHHhhcCCCChHHH
Confidence            8876 999999999999 777666544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=88.08  E-value=7.5  Score=38.51  Aligned_cols=97  Identities=11%  Similarity=-0.048  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHh-hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            5 QLRSKATELLL-REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         5 ~l~~~Gn~~~~-~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      -+..-|..-+. .++.+.|...|+.++...|.+..                  +|.....-+.++++.+.|...+++++.
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------------------~~~~Y~~~l~~~~d~~~aR~lfer~i~   98 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------------------FWLEYLDFLIKLNDINNARALFERAIS   98 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------------------HHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            34455555555 56777799999999999998876                  788888888999999999999999999


Q ss_pred             cCCCch---HHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           84 IESSHF---KALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        84 l~p~~~---ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      .-|...   ..|-+...--...|+.+......+++. ..|
T Consensus        99 ~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   99 SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP  138 (280)
T ss_dssp             TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred             hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            866554   344455555566688888888877777 444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.52  E-value=2.8  Score=40.93  Aligned_cols=74  Identities=18%  Similarity=0.249  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      .+.=..+...++|+.|...-.+.+.++|.++.                  -+--||.+|.++|-+.-|++|+...++.-|
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~------------------eirDrGliY~ql~c~~vAl~dl~~~~~~~P  246 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPY------------------EIRDRGLIYAQLGCYHVALEDLSYFVEHCP  246 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChh------------------hccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence            34456677899999999999999999999876                  567899999999999999999999999999


Q ss_pred             CchHHHHHHHHH
Q 035535           87 SHFKALLCKGKI   98 (518)
Q Consensus        87 ~~~ka~~~~g~a   98 (518)
                      +.+.+-.-++..
T Consensus       247 ~~~~a~~ir~~l  258 (269)
T COG2912         247 DDPIAEMIRAQL  258 (269)
T ss_pred             CchHHHHHHHHH
Confidence            888776555443

>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]

Probab=87.18  E-value=0.26  Score=52.32  Aligned_cols=42  Identities=40%  Similarity=0.725  Sum_probs=35.0

Q ss_pred             ccccCCCCCCceEE---eeC-CEEEEEEcCCCCCCCeEEeecCCCC
Q 035535          317 SFINHSCSPNARRV---HVG-DYIIVHASRDVKAGEEITFAYFDML  358 (518)
Q Consensus       317 s~~NHsC~PN~~~~---~~~-~~~~v~A~rdI~~Geeit~sY~~~~  358 (518)
                      .++||||.||+.-.   ..+ .++.+.|.+.|+.|+|+|++|....
T Consensus       373 r~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~  418 (463)
T KOG1081|consen  373 RFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNC  418 (463)
T ss_pred             hhhcccCCCceeechhheecccccccccccccccchhhhheeeccc
Confidence            58899999999754   233 4789999999999999999997653

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.88  E-value=3.7  Score=32.05  Aligned_cols=34  Identities=18%  Similarity=0.067  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQS   35 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~   35 (518)
                      .+-.+..++..+=+.|+|++|+.+|.+||++.-.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            3556777888888999999999999999987644

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.81  E-value=1.1  Score=29.82  Aligned_cols=28  Identities=29%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      +|..+|.+-+..++|++|+.|+.+++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5667777777777888888888877765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.70  E-value=15  Score=34.26  Aligned_cols=96  Identities=22%  Similarity=0.248  Sum_probs=65.8

Q ss_pred             hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHH------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-ch
Q 035535           17 EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKS------LCLALSNRAEARSRLRDFDNALRDCEQALKIESS-HF   89 (518)
Q Consensus        17 g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~------l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~-~~   89 (518)
                      ++..+|-..|.+++........   .....++++...      -.++-..+|.++...+++++|+..++.++....+ +.
T Consensus        48 ~q~~~AS~~Y~~~i~~~~ak~~---~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l  124 (207)
T COG2976          48 EQAQEASAQYQNAIKAVQAKKP---KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL  124 (207)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH
Confidence            3455888889999876532211   111122222221      1235567788889999999999999999976543 44


Q ss_pred             H--HHHHHHHHHHhccChHHHHHHHHHH
Q 035535           90 K--ALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        90 k--a~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      +  +-.|+|++++.+|.+++|+..+...
T Consensus       125 k~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         125 KALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            4  4579999999999999999887654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=86.13  E-value=5.5  Score=44.77  Aligned_cols=82  Identities=17%  Similarity=0.054  Sum_probs=64.5

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      .-+|-.+++.|++++|..+. +++..-+.+..                 ..+.-+..||..++++++|+..+++++..+|
T Consensus        47 vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~-----------------~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   47 VLKALSLFRLGKGDEALKLL-EALYGLKGTDD-----------------LTLQFLQNVYRDLGKLDEAVHLYERANQKYP  108 (932)
T ss_pred             HHHHHHHHHhcCchhHHHHH-hhhccCCCCch-----------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence            34677889999999999544 44443332211                 1566778899999999999999999999999


Q ss_pred             CchHHHHHHHHHHHhccChHH
Q 035535           87 SHFKALLCKGKILLSLNRYSM  107 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg~~~~  107 (518)
                      + .+.++.+-.+|.+.+.|.+
T Consensus       109 ~-eell~~lFmayvR~~~yk~  128 (932)
T KOG2053|consen  109 S-EELLYHLFMAYVREKSYKK  128 (932)
T ss_pred             c-HHHHHHHHHHHHHHHHHHH
Confidence            8 8888888899998888864

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.83  E-value=1.1  Score=26.98  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHhccChHHHHHHHH
Q 035535           91 ALLCKGKILLSLNRYSMALDCFK  113 (518)
Q Consensus        91 a~~~~g~al~~lg~~~~A~~~~~  113 (518)
                      +++.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            44555555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=85.78  E-value=14  Score=38.01  Aligned_cols=115  Identities=15%  Similarity=0.129  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh-----cc------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQ-----SQ------ITETKQEASQLSKLKKSLCLALSNRAEARSRLRD   70 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p-----~~------~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~   70 (518)
                      +++.+.+.+..+..+|+++.|.+..++||-...     ..      ...+....+-....-+.+.++++.....+.+.|-
T Consensus        39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~  118 (360)
T PF04910_consen   39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC  118 (360)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence            467888999999999999999999999985432     11      0000000000011123456688888999999999


Q ss_pred             HHHHHHHHHHHHhcCCC-chH-HHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           71 FDNALRDCEQALKIESS-HFK-ALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        71 ~~~Al~~~~~al~l~p~-~~k-a~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +..|++.|+-.+.+||. ++- +++.+-......++|+--++.++...
T Consensus       119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~  166 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL  166 (360)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence            99999999999999998 543 45555555556677776666655543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.47  E-value=22  Score=32.52  Aligned_cols=106  Identities=16%  Similarity=0.067  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-h
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL-K   83 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al-~   83 (518)
                      .....|....++|+-..|+..|+.+-.-.|-...     ..+         ++...-|..+...|.|++...-.+..- .
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-----~rd---------~ARlraa~lLvD~gsy~dV~srvepLa~d  161 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-----GRD---------LARLRAAYLLVDNGSYDDVSSRVEPLAGD  161 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-----hhH---------HHHHHHHHHHhccccHHHHHHHhhhccCC
Confidence            3456778888999999999999887654332111     011         266677788888899988766554321 2


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCc
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGS  124 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~  124 (518)
                      -+|-...+.--+|.+-+..|+|..|...|.+...+.+.|.+
T Consensus       162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn  202 (221)
T COG4649         162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN  202 (221)
T ss_pred             CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence            34555667778899999999999999999988866545544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=85.31  E-value=5  Score=38.09  Aligned_cols=74  Identities=15%  Similarity=0.088  Sum_probs=48.8

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch-HH
Q 035535           13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF-KA   91 (518)
Q Consensus        13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~-ka   91 (518)
                      .....=+..|++.|.+|+........ +.+.           ..+.+-+|....++|++++|+..+.+++.....+. ..
T Consensus       135 ~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~~-----------~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~  202 (214)
T PF09986_consen  135 ENEKRFLRKALEFYEEAYENEDFPIE-GMDE-----------ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPK  202 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCCCC-CchH-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHH
Confidence            33344467788888888776533111 0111           12788899999999999999999999998754333 35


Q ss_pred             HHHHHHH
Q 035535           92 LLCKGKI   98 (518)
Q Consensus        92 ~~~~g~a   98 (518)
                      +..+|+-
T Consensus       203 l~~~AR~  209 (214)
T PF09986_consen  203 LKDMARD  209 (214)
T ss_pred             HHHHHHH
Confidence            5555543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=85.31  E-value=3.9  Score=42.57  Aligned_cols=73  Identities=18%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHHHH
Q 035535           62 AEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKK  137 (518)
Q Consensus        62 a~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~~~  137 (518)
                      |+-++..|+|.+|.-++.-..+++| .+.+|--+|.+++...+|++|..++...-  |++.-....+.+.+.-|.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dskvqKAl~lCqK  541 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSKVQKALALCQK  541 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHHHHHHHHHHHH
Confidence            4557789999999999999999999 99999999999999999999999987642  2222222445555555544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.02  E-value=6.2  Score=30.68  Aligned_cols=62  Identities=8%  Similarity=0.118  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEAS-QLSKLKKSLCLALSNRAEARS   66 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~-~~~~~~~~l~~~~~nra~a~~   66 (518)
                      .+..+-.++..+=+.|++.+|+.+|++||++.-.....   .|+ ......+....=|.+|+..+-
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~---~pD~~~k~~yr~ki~eY~~Rae~Lk   67 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKN---YPDSPTRLIYEQMINEYKRRIEVLE   67 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888899999999999999999875332210   000 112233344445666666643

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.77  E-value=4.8  Score=39.62  Aligned_cols=95  Identities=12%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhhccc--chhhhhhHHHH-HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 035535           22 SVQVYTQFIDLCQSQI--TETKQEASQLS-KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKI   98 (518)
Q Consensus        22 Ai~~y~~Al~~~p~~~--~~~~~~~~~~~-~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~a   98 (518)
                      -++.+.+.+.....+.  +...++.++.. .+..+....+.-.+..|+..|.|.+|++.+++++.+||-+...+.-+-.+
T Consensus       243 tide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~  322 (361)
T COG3947         243 TIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMAS  322 (361)
T ss_pred             CHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence            3555555555543221  11233444332 34444444566678889999999999999999999999999999999999


Q ss_pred             HHhccChHHHHHHHHHHH
Q 035535           99 LLSLNRYSMALDCFKETL  116 (518)
Q Consensus        99 l~~lg~~~~A~~~~~~al  116 (518)
                      |..+|+--.|...|++.-
T Consensus       323 la~~gD~is~~khyerya  340 (361)
T COG3947         323 LATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHhccchhhhhHHHHHH
Confidence            999999888888877654

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=84.70  E-value=7  Score=42.02  Aligned_cols=93  Identities=15%  Similarity=-0.042  Sum_probs=68.7

Q ss_pred             HhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH-HHHhcCCCchHHH
Q 035535           14 LLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE-QALKIESSHFKAL   92 (518)
Q Consensus        14 ~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~-~al~l~p~~~ka~   92 (518)
                      ...++...|+.....++..+|....                  ++.|++.+....|....++.+.. .+....|++....
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~  139 (620)
T COG3914          78 APLADSTLAFLAKRIPLSVNPENCP------------------AVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL  139 (620)
T ss_pred             cccccchhHHHHHhhhHhcCcccch------------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence            3445556666667777777776655                  88899988888776655555544 4888999887766


Q ss_pred             HHH------HHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           93 LCK------GKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        93 ~~~------g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ..+      |..+..+++..++...+.++. ..|.++..
T Consensus       140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~  178 (620)
T COG3914         140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV  178 (620)
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence            666      888888899999999999888 77776543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.32  E-value=1.9  Score=29.83  Aligned_cols=25  Identities=12%  Similarity=0.173  Sum_probs=19.1

Q ss_pred             HHHHHHHHhccChHHHHHHHHHHHh
Q 035535           93 LCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        93 ~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                      +.+|.+|..+|+++.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677788888888888888877773

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.76  E-value=2.3  Score=44.23  Aligned_cols=60  Identities=25%  Similarity=0.397  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---------CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIE---------SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~---------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .+..-+..++.-+|+|..|++..+- ++++         +-+...+|..|-+|+.+++|.+|++.|...+
T Consensus       123 FSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  123 FSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566778889999999987654 3332         3467889999999999999999999999988

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=83.67  E-value=3.4  Score=27.18  Aligned_cols=32  Identities=13%  Similarity=0.237  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHH--HHHHHhhc
Q 035535            4 QQLRSKATELLLREEWKESVQVYT--QFIDLCQS   35 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~--~Al~~~p~   35 (518)
                      +.|...|-.++.+|+|++|+..|+  -+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            567888999999999999999944  77777664

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=83.41  E-value=2.6  Score=41.24  Aligned_cols=60  Identities=15%  Similarity=0.047  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH--hccccCCcHHHHHHHHHH
Q 035535           74 ALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL--VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        74 Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al--~~p~~~~~~~~l~~~l~~  134 (518)
                      |..+|.+|+.+.|++...|..+|.+....|+.=+|+-+|-+++  ..| .+....++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P-f~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP-FPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999  444 45566777777766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.36  E-value=9  Score=40.24  Aligned_cols=92  Identities=21%  Similarity=0.165  Sum_probs=75.7

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      ...-...+..|+...|-+....+++..|..+.                  ...-++.++..+|.|+.|+++..-+-.+=.
T Consensus       293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~------------------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~  354 (831)
T PRK15180        293 TLSITKQLADGDIIAASQQLFAALRNQQQDPV------------------LIQLRSVIFSHLGYYEQAYQDISDVEKIIG  354 (831)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHhCCCCch------------------hhHHHHHHHHHhhhHHHHHHHhhchhhhhc
Confidence            33445567789999999999999999888876                  666788999999999999998877766666


Q ss_pred             CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           87 SHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .-.++.-.+-+.+..++++++|...-.-.+
T Consensus       355 s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l  384 (831)
T PRK15180        355 TTDSTLRCRLRSLHGLARWREALSTAEMML  384 (831)
T ss_pred             CCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            667788888888999999999988776666

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=83.29  E-value=7.9  Score=29.31  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQ   34 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p   34 (518)
                      .+-.+..+|..+=+.|+|++|+.+|++|++..-
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            355677788888899999999999999998753

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=83.18  E-value=5.3  Score=39.09  Aligned_cols=62  Identities=18%  Similarity=0.027  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 035535           22 SVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLS  101 (518)
Q Consensus        22 Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~  101 (518)
                      |+.+|.+|+.+.|....                  .|..+|......|+.-.|+-+|-+++-..-.++.|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~------------------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGN------------------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSH------------------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC------------------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999987                  899999999999999999999999998876678888888888777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=82.87  E-value=31  Score=31.61  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCc
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESS---HFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGS  124 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~  124 (518)
                      .++..+|.-|.+.|++++|++.+.++.+...+   ....+++.-++....+++......+.++-..+...++
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d  108 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD  108 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence            48999999999999999999999998886532   2457788889999999999999999999844444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.82  E-value=8.1  Score=39.75  Aligned_cols=97  Identities=16%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|.-|...|++..|+..|.++-+++.....    .           .-.+.|.-.+-..+|+|.....+..+|.+.
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh----v-----------Inm~ln~i~VSI~~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH----V-----------INMCLNLILVSIYMGNWGHVLSYISKAEST  216 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH----H-----------HHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence            4566788899999999999999998777654321    1           126778888888899999999988888766


Q ss_pred             C--------CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 E--------SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 ~--------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      -        .-.++..-..|.+.+.+++|..|.++|-.+-
T Consensus       217 ~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  217 PDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             chhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1        1135666778889999999999998887665

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.51  E-value=7.7  Score=30.33  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQS   35 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~   35 (518)
                      .+..+..+|..+=+.|+|++|+.+|.+||+..-.
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3566778889999999999999999999987543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=82.49  E-value=15  Score=43.66  Aligned_cols=99  Identities=12%  Similarity=0.008  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ...-|...|..++++.+-++|-....+||...|....                .......|+.-++.|+.+.+...++-.
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH----------------v~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH----------------VEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh----------------HHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence            3457889999999999999999999999999988321                117788899999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +.-.|.....|.-....-...|+.+.+...|++++
T Consensus      1627 l~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1627 LSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred             HhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            99999998999888888889999999999999999

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.44  E-value=17  Score=32.37  Aligned_cols=84  Identities=10%  Similarity=-0.128  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +.+.........+..++.......=.+.|+.+.                  +-.--+-.++..|+|.+|+..++...+-.
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e------------------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKE------------------LDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc------------------cchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            334444445566666666666555555666654                  34444566777777777777777776666


Q ss_pred             CCchHHHHHHHHHHHhccChHH
Q 035535           86 SSHFKALLCKGKILLSLNRYSM  107 (518)
Q Consensus        86 p~~~ka~~~~g~al~~lg~~~~  107 (518)
                      +..+-+---++.|++.+|+.+-
T Consensus        75 ~~~p~~kAL~A~CL~al~Dp~W   96 (153)
T TIGR02561        75 GAPPYGKALLALCLNAKGDAEW   96 (153)
T ss_pred             CCchHHHHHHHHHHHhcCChHH
Confidence            6655555556777777776653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.48  E-value=2.8  Score=27.93  Aligned_cols=31  Identities=10%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQ   34 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p   34 (518)
                      +-+-.+|...+..++|.+|+.-|.++|.+..
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4466789999999999999999999998753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.29  E-value=12  Score=35.37  Aligned_cols=76  Identities=8%  Similarity=0.043  Sum_probs=61.6

Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           63 EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        63 ~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      ..+++-+...+|+.+.+.-++-+|.+.-....+-+.|.-.|+|++|...++-+- ..|++.......+.++ +|..+.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li-r~ea~R   85 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI-RCEAAR   85 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH-HHHHHH
Confidence            356778899999999999999999999988888899999999999999999988 7887766544444444 344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	518
3oxg_A	464	Human Lysine Methyltransferase Smyd3 In Complex Wit		4e-11
3qwp_A	429	Crystal Structure Of Set And Mynd Domain Containing		4e-11
3oxf_A	436	Human Lysine Methyltransferase Smyd3 In Complex Wit		4e-11
3pdn_A	428	Crystal Structure Of Smyd3 In Complex With Methyltr		4e-11
3ru0_A	438	Cocrystal Structure Of Human Smyd3 With Inhibitor S		4e-11
3mek_A	429	Crystal Structure Of Human Histone-Lysine N- Methyl		7e-10
3rib_A	441	Human Lysine Methyltransferase Smyd2 In Complex Wit		1e-07
3tg4_A	433	Structure Of Smyd2 In Complex With Sam Length = 433		1e-07
3s7b_A	433	Structural Basis Of Substrate Methylation And Inhib		1e-07
3qwv_A	433	Crystal Structure Of Histone Lysine Methyltransfera		1e-06
3s8p_A	273	Crystal Structure Of The Set Domain Of Human Histon		4e-04

>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
           S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+   E+RK++   + F C
Sbjct: 238 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 297
Query: 376 KCKRCKFEE 384
            C RC+ ++
Sbjct: 298 DCFRCQTQD 306

>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
           S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+   E+RK++   + F C
Sbjct: 203 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 262
Query: 376 KCKRCKFEE 384
            C RC+ ++
Sbjct: 263 DCFRCQTQD 271

>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
           S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+   E+RK++   + F C
Sbjct: 202 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 261
Query: 376 KCKRCKFEE 384
            C RC+ ++
Sbjct: 262 DCFRCQTQD 270

>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
           S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+   E+RK++   + F C
Sbjct: 202 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 261
Query: 376 KCKRCKFEE 384
            C RC+ ++
Sbjct: 262 DCFRCQTQD 270

>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
           S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+   E+RK++   + F C
Sbjct: 204 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 263
Query: 376 KCKRCKFEE 384
            C RC+ ++
Sbjct: 264 DCFRCQTQD 272

>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
           S +NHSC PN   V  G ++++ A RD++ GEE+T  Y D L    E+RK++   + F C
Sbjct: 203 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLRDQYCFEC 262
Query: 376 KCKRCKFEE 384
            C RC+ ++
Sbjct: 263 DCFRCQTQD 271

>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 316 ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFH 374
            + +NHSC PN    + G    V A +++K GEE+  +Y D+L P E R + +  ++ F 
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 375 CKCKRCKFEEGMSSKQELSEI 395
           C+C+ C  ++   +K E+ ++
Sbjct: 262 CECQECTTKDKDKAKVEIRKL 282

>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 316 ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFH 374
            + +NHSC PN    + G    V A +++K GEE+  +Y D+L P E R + +  ++ F 
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 375 CKCKRCKFEEGMSSKQELSEI 395
           C+C+ C  ++   +K E+ ++
Sbjct: 262 CECQECTTKDKDKAKVEIRKL 282

>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 316 ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFH 374
            + +NHSC PN    + G    V A +++K GEE+  +Y D+L P E R + +  ++ F 
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 375 CKCKRCKFEEGMSSKQELSEI 395
           C+C+ C  ++   +K E+ ++
Sbjct: 262 CECQECTTKDKDKAKVEIRKL 282

>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 316 ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFH 374
            + +NHSC PN    + G    V A +++  G+E+  +Y D+L P E R + +  ++ F 
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 375 CKCKRCKFEEGMSSKQELSEI 395
           C+C+ C  ++   +K E+ ++
Sbjct: 262 CECRECTTKDKDKAKVEVRKL 282

>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human Histone-Lysine N- Methyltransferase Suv420h1 In Complex With S-Adenosyl-L-Methionine Length = 273

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 316 ASFINHSCSPNARRVHVG-DYIIVHASRDVKAGEEITFAYFDMLL 359
           A+FINH C PN + V  G D   V A RD++ GEEI+  Y D   
Sbjct: 206 AAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFF 250

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	518
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-26
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	2e-26
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-20
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-14
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-14
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	6e-14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-13
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-13
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-12
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-12
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-12
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	3e-12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	7e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-04
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	1e-10
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	2e-10
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	3e-10
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	3e-10
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	5e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-04
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	6e-10
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	6e-10
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	8e-10
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	9e-10
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	1e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-09
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	3e-09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-09
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	1e-08
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	1e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-05
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-04
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	9e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-04
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	4e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	5e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-04
3ihx_A	152	PR domain zinc finger protein 10; PRDM10, methyltr	9e-04

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score =  110 bits (276), Expect = 2e-26
 Identities = 50/271 (18%), Positives = 90/271 (33%), Gaps = 51/271 (18%)

Query: 170 AVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGILSGENSNEN------------- 216
            V+   +   G GL A   +  G L   +  +A      S     +              
Sbjct: 6   KVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQ 65

Query: 217 ---------------------EQLVMWKNFIDKVMESISKCQRTRHLISILSSGDNEDEV 255
                                E   +         +S+    R    +   +  ++E   
Sbjct: 66  CRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLY 125

Query: 256 EVPDVSAFRPEAEERRSSNEKLDMGKILSIL-----DVNSLVEDAISAKVLGK------- 303
              D+ +   +  E R    +  +      +     D + L       +   K       
Sbjct: 126 SFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFT 185

Query: 304 ----NKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLL 359
                    G+GL+   S +NHSC PN   V  G ++++ A RD++ GEE+T  Y DML+
Sbjct: 186 ICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLM 245

Query: 360 PLEKR-KEMSKTWGFHCKCKRCKFEEGMSSK 389
             E+R K++   + F C C RC+ ++  +  
Sbjct: 246 TSEERRKQLRDQYCFECDCFRCQTQDKDADM 276

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score =  110 bits (276), Expect = 2e-26
 Identities = 54/308 (17%), Positives = 109/308 (35%), Gaps = 22/308 (7%)

Query: 220 VMWKNFIDKVMESISKCQRTRHLISILSSGDNEDEVEV-PDVSAFRPEAEERRSSNEKLD 278
           ++ K  I        K    R   S L   DNE +  +  D++A      +     +   
Sbjct: 112 ILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSS 171

Query: 279 MGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIV 338
           +  + + ++ N          +  +     G  ++   + +NHSC PN    + G    V
Sbjct: 172 LVVLFAQVNCNGFT-------IEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEV 224

Query: 339 HASRDVKAGEEITFAYFDMLLPLEKR-KEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEI 397
            A +++  G+E+  +Y D+L P E R   +  ++ F C+C+ C  ++    K ++   ++
Sbjct: 225 RAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKD--KDKAKVEVRKL 282

Query: 398 GLERGIDAGNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAA 457
                 +A   + R   N+     R K        +          E++   +       
Sbjct: 283 SSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQ---EKMSSVFEDSNVYM 339

Query: 458 EAVVDSVVEA---VGCDERMLKVLIEGLKGSSCGMPEMERPI-----KLGKGLYGKLVKK 509
             ++   +     +   E  LK   + +K  S   P     +     KLG+   G   K 
Sbjct: 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKA 399

Query: 510 QALKSLLE 517
              K+L +
Sbjct: 400 AGEKALKK 407

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 93.5 bits (231), Expect = 2e-20
 Identities = 56/416 (13%), Positives = 115/416 (27%), Gaps = 73/416 (17%)

Query: 170 AVQISKSEISGRGLFATKNVEAGTLFLVTKAIAT-----ERGILSGENSNENEQLVM--- 221
            V++  SE  GRGL ATK   A  +    +A +          +        E+L     
Sbjct: 8   NVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQ 67

Query: 222 -------------------------WKNFIDKVMESISKCQRTRHLISILSSGDNEDEVE 256
                                     K +     E+I    R    +    +G  E  + 
Sbjct: 68  CKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLV 127

Query: 257 VPDVSAFRPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGK------------- 303
              V   +   E      +K     + + L          S + +               
Sbjct: 128 --SVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLS 185

Query: 304 -NKGLYGLG--LWALASFINHSCSPNARRVHVGDY-------------IIVHASRDVKAG 347
             +GL  +G  ++     +NH C PN   +                  I + A   +  G
Sbjct: 186 DQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEG 245

Query: 348 EEITFAYFDMLLPLEKR-KEMSKTWGFHCKCKRCKFEEGMSSKQELSEIEIGLERGIDAG 406
           EE+T +Y D L   E+R +++ K + F C C+ C+              +   +   +  
Sbjct: 246 EELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGL---KDDLFLAAKEDPKPSQEVV 302

Query: 407 NAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYGSERLMKRWGKRIPAAEAVVDSVVE 466
             + +  ++    I + + +G     +          E +       +    ++   V+ 
Sbjct: 303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS 362

Query: 467 AVGCDERMLKVLIEGLKGSSCGMPEMERPI-----KLGKGLYGKLVKKQALKSLLE 517
            +   E         + G           +     + G   +     +     + +
Sbjct: 363 YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK 418

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 20/142 (14%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           Q+L+ +   L +  ++ E+   Y + I                       + +  +NRA 
Sbjct: 10  QELKEQGNRLFVGRKYPEAAACYGRAITRN------------------PLVAVYYTNRAL 51

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDA--QA 121
              +++  + AL DC +AL+++    KA    G+  L +  Y  A+   +     A  Q 
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 122 SGSLETVNGFLEKSKKLEYQSR 143
               + +   L  +KK  + S 
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSI 133

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
             ++QLR +  EL    ++  ++  YTQ + L  +                +   +   N
Sbjct: 26  SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---------------PQDQAVLHRN 70

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV--- 117
           RA    +L D+D A  +  +A++ +    KAL  + + L  L R   A+   +  +    
Sbjct: 71  RAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130

Query: 118 -DAQASGSLETVNG 130
            +     +L  ++G
Sbjct: 131 KNKVFQEALRNISG 144

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 68.0 bits (167), Expect = 5e-14
 Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 18/116 (15%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           EL Q+ ++K  E   + ++  +++ Y + +                            SN
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI------------------LYSN 52

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           RA   ++L +F  AL DC+  ++++S   K  + K   L+++  +S A   +++ L
Sbjct: 53  RAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 71.1 bits (174), Expect = 6e-14
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 20/143 (13%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           Q+L+ +   L +  ++ E+   Y + I                         +  +NRA 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------------------AVYYTNRAL 46

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDA--QA 121
              +++  + AL DC +AL+++    KA    G+  L +  Y  A+   +     A  Q 
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 122 SGSLETVNGFLEKSKKLEYQSRT 144
               + +   L  +KK  + S  
Sbjct: 107 LNFGDDIPSALRIAKKKRWNSIE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 67.2 bits (165), Expect = 8e-14
 Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 22/136 (16%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           ++L+++  E +  E ++ +V  Y + I+L  +                        NRA 
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV------------------YFCNRAA 54

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV----DA 119
           A S+L ++  A++DCE+A+ I+ ++ KA    G  L SLN++  A+  +K+ L     + 
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

Query: 120 QASGSLETVNGFLEKS 135
               +L+     L ++
Sbjct: 115 TYKSNLKIAELKLREA 130

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 22/138 (15%), Positives = 57/138 (41%), Gaps = 22/138 (15%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           ++L+++A +    ++++ +++ Y+Q I+L  S                        NR+ 
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSL 55

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV----DA 119
           A  R   +  AL D  +A++++  + K    +    ++L ++  AL  ++  +     D 
Sbjct: 56  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115

Query: 120 QASGSLETVNGFLEKSKK 137
            A    +  N  +++   
Sbjct: 116 DAKMKYQECNKIVKQKAF 133

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 24/116 (20%), Positives = 51/116 (43%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           + ++ LR K  EL +++++KE++  Y   +    + I   K    +  +L +      +N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            ++    + D   A     + LK E ++ KAL  + K  ++  +   A +  K  L
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 18/116 (15%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           +L   +++K  E   + ++ ++++ YT+ I                            SN
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------------------AKLYSN 55

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           RA   ++L +F  AL+DCE+ +++E +  K    K   L ++  Y+ A+D +++ L
Sbjct: 56  RAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 24/140 (17%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
            +L+S+    + R+E+ +++ +YTQ + +  +                      LSNRA 
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI------------------YLSNRAA 53

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL------V 117
           A S     + A  D E A  ++  + KA    G     +  Y  A + +++ +       
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 118 DAQASGSLETVNGFLEKSKK 137
                  LET    +E++ +
Sbjct: 114 SDAMKRGLETTKRKIEEANR 133

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 18/138 (13%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           ++ R +  E   + +W  +V+ YT+ I                            SNRA 
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRA------------------PEDARGYSNRAA 46

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASG 123
           A ++L  F  A+ DC +A++ + +  +A + K    +++  Y+ AL+             
Sbjct: 47  ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

Query: 124 SLETVNGFLEKSKKLEYQ 141
           +  +     +   K   Q
Sbjct: 107 NGSSAREIDQLYYKASQQ 124

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           +    ++ +  E   + E  E++  Y + +D      TE   +   L K K        N
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH--TEEWDDQILLDKKKNIEISCNLN 93

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV--- 117
            A   ++ +D+  A+    + LKI+ ++ KAL   G   +       A +   +      
Sbjct: 94  LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153

Query: 118 -DAQASGSLETVNGFLEKSKKLEYQ 141
            +     S E     L++++K +  
Sbjct: 154 NNLDIRNSYELCVNKLKEARKKDKL 178

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 22/133 (16%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           E + +L+ K  + L      +++Q Y++ I L                          SN
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV------------------LYSN 43

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV--- 117
           R+ A ++  D+  A  D  + + ++    K    K   L  LNR+  A   ++E L    
Sbjct: 44  RSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 103

Query: 118 -DAQASGSLETVN 129
            + Q    L+ + 
Sbjct: 104 NNPQLKEGLQNME 116

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 28/143 (19%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           E    ++ + T      ++K+++  Y + +   + + + + +EA +   L+ +  L   N
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL---N 201

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV--- 117
            A    +L+ F  A+  C +AL+++S++ K L  +G+  L++N + +A   F++ L    
Sbjct: 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261

Query: 118 -DAQASGSLETVNGFLEKSKKLE 139
            +  A   L      + +    E
Sbjct: 262 NNKAAKTQLAVCQQRIRRQLARE 284

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 25/132 (18%)

Query: 264 RPEAEERRSSNEKLDMGKILSI---LDVNSLVEDAISAKVLGKNKGLYGLGLWALASFIN 320
             E + R     K D   I++I   +    ++E  +    +G N          +  F+N
Sbjct: 162 FSEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIG-N----------IGRFLN 210

Query: 321 HSCSPNAR--RVHVGD---YIIVHASRDVKAGEEITFAY----FDMLLPLEKRKEMSKTW 371
           HSC PN     V +      + + A++D+   EE+++ Y     ++ +   K +      
Sbjct: 211 HSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKL 270

Query: 372 GFHCKC--KRCK 381
              C C  K C 
Sbjct: 271 RKPCYCGAKSCT 282

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 19/117 (16%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           ++ + +   L  +  ++E+V  Y Q I                         +  SN+A 
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------------------PVGYSNKAM 46

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQ 120
           A  +L ++  A++ C+Q L+  S+     + + K+   L     A+   +  +V+  
Sbjct: 47  ALIKLGEYTQAIQMCQQGLRYTSTAEHVAI-RSKLQYRLELAQGAVGSVQIPVVEVD 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 3e-12
 Identities = 78/535 (14%), Positives = 175/535 (32%), Gaps = 126/535 (23%)

Query: 2   LMQQLR------SKATELLL--REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLK-- 51
           LM  ++      S  T + +  R+      QV+ ++ ++ + Q     ++A  L +L+  
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQA--LLELRPA 150

Query: 52  ------------KSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKIL 99
                       K+  +A     +       +      C+   KI   + K       +L
Sbjct: 151 KNVLIDGVLGSGKT-WVA----LDV---CLSYK---VQCKMDFKIFWLNLKNCNSPETVL 199

Query: 100 LSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGAL----DLSD-WIL 154
             L +    +D    +  D  ++  L   +   E  + L+ +     L    ++ +    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 155 NGLRGKCPEL--------AEYIGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERG 206
           N     C  L         +++ A   +   +    +  T + E  +L L  K +     
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLL--KYLDCRPQ 316

Query: 207 ILSGENSNEN------------EQLVMWKNF----IDKVMESISKCQRTRHLISILSSGD 250
            L  E    N            + L  W N+     DK+   I         +++L   +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNVLEPAE 370

Query: 251 NEDEVEVPDVSAFRPEAEERRSSNEKLDMGKILSIL-------DVNSLVEDAISAKVLGK 303
                +   +S F P        +  +    +LS++       DV  +V       ++ K
Sbjct: 371 YRKMFD--RLSVF-PP-------SAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 304 NK-----GLYGL---------GLWAL-ASFINH------SCSPNARRVHVGDYI---IVH 339
                   +  +           +AL  S ++H        S +    ++  Y    I H
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 340 ASRDVKAGEEITF---AYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEEGMSSKQELSEIE 396
             ++++  E +T     + D    LE++     T            ++    K  + + +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 397 IGLERGIDA-GNAVFRLEENMKRWIVRGKEKGYLRASIWSAYAETYG-SERLMKR 449
              ER ++A  + + ++EEN    ++  K    LR ++ +     +  + + ++R
Sbjct: 539 PKYERLVNAILDFLPKIEEN----LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 47/371 (12%), Positives = 101/371 (27%), Gaps = 100/371 (26%)

Query: 68  LRDFDNALRDCEQALK--IESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSL 125
           + +FD   +D +   K  +       ++     +    R    L   +E +V       L
Sbjct: 30  VDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 126 ETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEY-------IGAVQISKSEI 178
                FL    K E +  +    +     + L       A+Y          ++ +  E+
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 179 -SGRGLF------ATKNVEAGTLFLVTKAIATER-------GI--LS-GENSNENEQLVM 221
              + +       + K        +      + +        I  L+    ++    L M
Sbjct: 148 RPAKNVLIDGVLGSGKTW------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 222 WKNFIDKVMESISKCQRTRHLISI---LSSGDNE-----------------DEVEVPDV- 260
            +  + ++  +     R+ H  +I   + S   E                   V+     
Sbjct: 202 LQKLLYQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 261 SAFRPEAEERRSSNEKLDMG-KILSILDVNSLVEDAISAKVLGK------NKGLY---GL 310
           +AF              ++  KIL +      V D +SA           +  L      
Sbjct: 260 NAF--------------NLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 311 GLWALASFINHSCS---PNARRVH------VGDYIIVHASR-------DVKAGEEITFAY 354
            L  L  +++             +      + + I    +        +      I  + 
Sbjct: 305 SL--LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 355 FDMLLPLEKRK 365
            ++L P E RK
Sbjct: 363 LNVLEPAEYRK 373

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119

 Score = 61.5 bits (150), Expect = 7e-12
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 315 LASFINHSCSPNAR--RVHVGDYIIVHASRDVKAGEEITFAY 354
             +  NHS  PNAR         + +   + +  GEEIT +Y
Sbjct: 64  FGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISY 105

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 18/142 (12%)

Query: 3   MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRA 62
           + +L   A EL+    + ++   Y   +                   + +    +     
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--------------PSIAEYTVRSKERIC 302

Query: 63  EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL----VD 118
              S+      A+R C + L++E  +  AL  + +  L    Y  A+  ++        D
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362

Query: 119 AQASGSLETVNGFLEKSKKLEY 140
            Q    LE     L++S+K +Y
Sbjct: 363 QQIREGLEKAQRLLKQSQKRDY 384

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 5e-11
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           ++      +LL   +  +++  +   +D                        +A   RA 
Sbjct: 27  EKHLELGKKLLAAGQLADALSQFHAAVDGD------------------PDNYIAYYRRAT 68

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASG 123
               +     AL D  + ++++     A L +G +LL   +   A D FK+ L    +  
Sbjct: 69  VFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128

Query: 124 SLETVNGFLEKSKKLEYQSRTG--ALDLSDW 152
             +     L KS +++        A    D+
Sbjct: 129 EEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 18/116 (15%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           + MQ+LRS+A       ++  ++    + +++C                           
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE------------------LREL 182

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           RAE   +  +   A+ D + A K+++ + +A      +   L  + ++L   +E L
Sbjct: 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 18  EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD 77
           +  E+   + + +        E K+  SQL K  +     L ++A       D+  A+  
Sbjct: 109 KLDEAEDDFKKVLKS-NPSENEEKEAQSQLIKSDE--MQRLRSQALNAFGSGDYTAAIAF 165

Query: 78  CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            ++ L++     +    + +  +       A+   K   
Sbjct: 166 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
            +L   A EL+    + ++   Y   +                   + +    +      
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVMKTE--------------PSVAEYTVRSKERICH 280

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV----DA 119
             S+      A+R C + L++E  +  AL  + +  L    Y  A+  ++        D 
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340

Query: 120 QASGSLETVNGFLEKSKK 137
           Q    LE     L++S+K
Sbjct: 341 QIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 16/68 (23%), Positives = 26/68 (38%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
                  +A   RA     +     AL D  + + ++     A L +G +LL   +   A
Sbjct: 31  DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEA 90

Query: 109 LDCFKETL 116
            D FK+ L
Sbjct: 91  EDDFKKVL 98

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 18/116 (15%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           + MQ+LRS+A +     ++  ++    + +++C                           
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE------------------LREL 159

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           RAE   +  +   A+ D + A K++S + +A      +   L  + ++L   +E L
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 18  EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD 77
           +  E+   + + +        E K+  SQL K  +     L ++A       D+  A+  
Sbjct: 86  KLDEAEDDFKKVLKS-NPSEQEEKEAESQLVKADEMQ--RLRSQALDAFDGADYTAAITF 142

Query: 78  CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            ++ L++     +    + +  +       A+   K   
Sbjct: 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 18/110 (16%)

Query: 7   RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARS 66
           R +  E   + +W  +V+ YT+ I                  K         SNRA A +
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMI------------------KRAPEDARGYSNRAAALA 184

Query: 67  RLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           +L  F  A+ DC +A++ + +  +A + K    +++  Y+ AL+      
Sbjct: 185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 11/60 (18%), Positives = 21/60 (35%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            L+NRA A     +++ A+     A++             K    +      L   K+T+
Sbjct: 40  YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTI 99

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 8/83 (9%), Positives = 25/83 (30%)

Query: 34  QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALL 93
                +  ++A   + +            +      D+ NA++   + +K      +   
Sbjct: 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177

Query: 94  CKGKILLSLNRYSMALDCFKETL 116
            +   L  L  +  A+    + +
Sbjct: 178 NRAAALAKLMSFPEAIADCNKAI 200

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 10/61 (16%), Positives = 25/61 (40%)

Query: 56  LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKET 115
           L     A+  ++LR+ +  L+  E    +     +    +GK   + + +  A+  + E 
Sbjct: 106 LTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM 165

Query: 116 L 116
           +
Sbjct: 166 I 166

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 7/57 (12%), Positives = 20/57 (35%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRY 105
           +   +   A   +A A+  ++++ +AL   + A   ++        +    L     
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
                     + R FD A+    +A ++       L  +         Y  A+    + +
Sbjct: 7   KEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAV 65

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           +  + +       +++ +R+ +  + L D ++ ++              IL  L      
Sbjct: 66  EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY-QKSLTEHRTADILTKLRNAEKE 124

Query: 109 LDCFKETL 116
           L   +   
Sbjct: 125 LKKAEAEA 132

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 16/74 (21%)

Query: 315 LASFINHSCSPN--ARRVHVGDY--IIVHASRDVKAGEEITFAY-FDMLLPLEKRKEMSK 369
            A FINHSC PN  +R +++     I++ A R +  GEE+T+ Y F +     K      
Sbjct: 124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLP---- 179

Query: 370 TWGFHCKC--KRCK 381
                C C  K+C+
Sbjct: 180 -----CNCGAKKCR 188

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 14/73 (19%)

Query: 315 LASFINHSCSPNAR--RVHVGDY--IIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKT 370
            A FINHSC PN    +  V     I ++A +D+ AG E+T+ Y      +EK++     
Sbjct: 146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQL---- 201

Query: 371 WGFHCKC--KRCK 381
               CKC  ++C+
Sbjct: 202 ----CKCGFEKCR 210

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 315 LASFINHSCSPNAR--RVHVG--DYIIVH----ASRDVKAGEEITFAYFDMLLPLEKRKE 366
           ++ F NHSCSPN              I      A +D++  EE+TF Y         + +
Sbjct: 213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQ 272

Query: 367 MSKTWGFHCKCKRCK 381
            S+        ++CK
Sbjct: 273 KSQQNRISKLRRQCK 287

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 266 EAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSP 325
           E + R    +    G  LS+ +     E  I       +   Y     +L    NHS +P
Sbjct: 149 EVDSR----DWALNGNTLSLDE-----ETVIDVPEPYNHVSKYC---ASLGHKANHSFTP 196

Query: 326 NAR-----RVHVGDYIIVHASRDVKAGEEITFAY 354
           N           G    +   R V+A EE+T AY
Sbjct: 197 NCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY 230

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302

 Score = 59.6 bits (144), Expect = 5e-10
 Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 315 LASFINHSCSPNARRVHV----GDYIIVH----ASRDVKAGEEITFAYFDMLLPLEKRKE 366
              FINHSC PN           D  I      A +D+  G E+TF Y + L  LE    
Sbjct: 220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAH 279

Query: 367 MSKTWG--FHCKC--KRCK 381
                     C C   +C+
Sbjct: 280 DPSKISEMTKCLCGTAKCR 298

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 19/111 (17%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
             L+ K  +    +++ ++++ Y   ++L +  +                     SN + 
Sbjct: 7   LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-------------------FYSNLSA 47

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKE 114
               + D    +    +AL+++  + K LL +      L +++ A+     
Sbjct: 48  CYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 11/68 (16%), Positives = 28/68 (41%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           KL  +      +R +    L+++D A +D ++A +++  +    +    +    N++   
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357

Query: 109 LDCFKETL 116
              F E  
Sbjct: 358 ETLFSEAK 365

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 19/108 (17%)

Query: 9   KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL 68
                 L+ +   + +   + I+L            +           +    A   +  
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIEL--------FPRVN-----------SYIYMALIMADR 283

Query: 69  RDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            D        ++ALK++S++      +G++   L  Y  A   F +  
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 17/100 (17%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 17  EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR 76
           E + ++ + +T+   L + Q+ +  ++     KLK+ L ++L +    +    D   A  
Sbjct: 203 ESYDKADESFTKAARLFEEQLDKNNEDE----KLKEKLAISLEHTGIFKFLKNDPLGAHE 258

Query: 77  DCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           D ++A+++      + +    I+   N  +   + F + L
Sbjct: 259 DIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 49  KLKKSLCLALSNRAEARSR---------LRDFDNALRDCEQALKIESSHFKALLCKGKIL 99
           +L+  L       A    +         + +F  A    E+A K++    +A +   ++ 
Sbjct: 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459

Query: 100 LSLNRYSMALDCFKETL 116
           L       A+  F+E+ 
Sbjct: 460 LQQEDIDEAITLFEESA 476

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           +L           A    R   FD+      +A +      +      +IL   N +  A
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKA 391

Query: 109 LDCFKETL 116
           L  +   +
Sbjct: 392 LKQYDLAI 399

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 51  KKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALD 110
           K    LAL ++     R + +D+A++    AL+++              +S+      ++
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVE 60

Query: 111 CFKETL 116
              + L
Sbjct: 61  MSTKAL 66

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILL---------SLNRYSM 107
             +  AE  +   DFD AL+  + A+++E+      +    ++          ++  +  
Sbjct: 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433

Query: 108 ALDCFKETL 116
           A +  ++  
Sbjct: 434 ATNLLEKAS 442

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 17/77 (22%)

Query: 315 LASFINHSCSPNAR--RVHVGD------YIIVHASRDVKAGEEITFAYFDMLLPLEKRKE 366
           ++ FINH C PN    RV +         I   ++R ++AGE++ F Y +    ++ +  
Sbjct: 216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKL- 274

Query: 367 MSKTWGFHCKC--KRCK 381
                 F C+C   +C+
Sbjct: 275 ------FSCRCGSPKCR 285

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 23/127 (18%)

Query: 264 RPEAEERRSSNEKLDMGKILSI-LDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHS 322
             EAE R    +   +  +  +  + +    DA          G        ++ F+NHS
Sbjct: 177 SEEAERRGQFYDNKGITYLFDLDYESDEFTVDA-------ARYG-------NVSHFVNHS 222

Query: 323 CSPNAR----RVHVGDYIIVH----ASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFH 374
           C PN +     +   D  +      ++R + AGEE+TF Y            +  +    
Sbjct: 223 CDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKK 282

Query: 375 CKCKRCK 381
                CK
Sbjct: 283 RVRTVCK 289

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 60.1 bits (145), Expect = 8e-10
 Identities = 24/116 (20%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           E    ++ K T      ++ ++V  Y + +   + +   +++E+        +  L   N
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL---N 322

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            A    +LR++  A+  C++AL ++S++ K L  +G+  L +N +  A   F++ L
Sbjct: 323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247

 Score = 58.1 bits (140), Expect = 9e-10
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 316 ASFINHSCSPNARRVHVG-DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFH 374
           A+FINH C PN + V    +   V   RD++ G+E+T  Y +                 H
Sbjct: 177 AAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGE---------GFFGEKNEH 227

Query: 375 CKCKRCK 381
           C+C  C+
Sbjct: 228 CECHTCE 234

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 314 ALASFINHSCSPN--ARRVHVGDY--IIVHASRDVKAGEEITFAY 354
            L   INHS   N   +   +     +I+ ASRD+ AGEE+ F Y
Sbjct: 106 RLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY 150

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 16/115 (13%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 5   QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLA---LSNR 61
           ++  K +  +   +  ++V  + Q I      +   + E    + + K+  ++    +  
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTI-----ALNIDRTEMYYWTNVDKNSEISSKLATEL 60

Query: 62  AEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A A  + R++D A    ++ L+   ++   L    ++ +   +   AL  +++ L
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKIL-LSLNRYSMALDCFKET 115
            L   AE +       +ALR  E+ L++E+ +  A +  G    L+  +    L+   + 
Sbjct: 90  CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149

Query: 116 L 116
           L
Sbjct: 150 L 150

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 17/145 (11%), Positives = 51/145 (35%), Gaps = 28/145 (19%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
            + +    +   ++++  +++ Y +  +L  + +T                   ++N+A 
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT------------------YITNQAA 46

Query: 64  ARSRLRDFDNALRDCEQALKIESSHF-------KALLCKGKILLSLNRYSMALDCFKETL 116
                 D++     CE+A+++   +        KA    G       +Y  A+  + ++L
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 117 V---DAQASGSLETVNGFLEKSKKL 138
                       +     L++ ++L
Sbjct: 107 AEHRTPDVLKKCQQAEKILKEQERL 131

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273

 Score = 57.0 bits (137), Expect = 3e-09
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 313 WALASFINHSCSPNARRVHVG-DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTW 371
              A+FINH C PN + V  G D   V A RD++ GEEI+  Y D               
Sbjct: 203 LGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNE------- 255

Query: 372 GFHCKCKRCK 381
              C+C  C+
Sbjct: 256 --FCECYTCE 263

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 9/143 (6%)

Query: 3   MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQIT--ETKQEASQLSKLKKSLCLALSN 60
             + +     L   E+ +E++Q Y   I             +       +K    L   N
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL---N 235

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV--- 117
            A    +L+ +D A+  C   L  E  + KAL  +GK    L +   A D F++      
Sbjct: 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295

Query: 118 -DAQASGSLETVNGFLEKSKKLE 139
            D      L  +    +   + +
Sbjct: 296 DDKAIRRELRALAEQEKALYQKQ 318

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 18/110 (16%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
            QL+++       + + E+++ Y   I                  +L  +  +  SN + 
Sbjct: 26  VQLKNRGNHFFTAKNFNEAIKYYQYAI------------------ELDPNEPVFYSNISA 67

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFK 113
                 D +  +    +AL+I+  H KALL +     SL  ++ A+    
Sbjct: 68  CYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 12/68 (17%), Positives = 26/68 (38%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
            L         +R +    L+D+ NA  D ++A  +   +    +    +L    +++ +
Sbjct: 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363

Query: 109 LDCFKETL 116
              F ET 
Sbjct: 364 EAFFNETK 371

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 42  QEASQLS-KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILL 100
            +   LS   +++  + L NR       ++F+ A++  + A++++ +            +
Sbjct: 11  AQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 70

Query: 101 SLNRYSMALDCFKETL 116
           S       ++   + L
Sbjct: 71  STGDLEKVIEFTTKAL 86

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 7/83 (8%), Positives = 24/83 (28%), Gaps = 1/83 (1%)

Query: 34  QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALL 93
                      +    L+++  LAL           +  +A    ++++ +  +   + +
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYI 280

Query: 94  CKGKILLSLNRYSMALDCFKETL 116
                L            F++ +
Sbjct: 281 FLALTLADKENSQEFFKFFQKAV 303

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 9/66 (13%), Positives = 32/66 (48%)

Query: 51  KKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALD 110
           K ++    S++   +     F+ A++   +A +++    +A +   ++ L + +   A++
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483

Query: 111 CFKETL 116
            F+++ 
Sbjct: 484 LFEDSA 489

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 6/68 (8%), Positives = 15/68 (22%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
            L           A    +   F  +     +      +  +      +IL     +  A
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397

Query: 109 LDCFKETL 116
           +  +    
Sbjct: 398 IKQYDIAK 405

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 19/113 (16%), Positives = 50/113 (44%), Gaps = 18/113 (15%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
           ++L+++A +    ++++ +++ Y+Q I+L  S                        NR+ 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSL 48

Query: 64  ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A  R   +  AL D  +A++++  + K    +    ++L ++  AL  ++  +
Sbjct: 49  AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 101

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 315 LASFINHSCSPN--ARRVHVGDY--IIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKT 370
            A F+NH C PN   ++  V     + + A  D+KAG E+TF Y    L   K       
Sbjct: 165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGKTV----- 219

Query: 371 WGFHCKC--KRCK 381
               CKC    C 
Sbjct: 220 ----CKCGAPNCS 228

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
                   +    ++  ++   E+A++++    K  L KGK L +L RY  A+DC+   +
Sbjct: 8   EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 5/62 (8%), Positives = 17/62 (27%), Gaps = 2/62 (3%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIE--SSHFKALLCKGKILLSLNRYSMALDCFKE 114
               + +A   L  ++ A+      + +     +      K   L  +    +  +  + 
Sbjct: 42  YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEA 101

Query: 115 TL 116
             
Sbjct: 102 RA 103

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 12/116 (10%), Positives = 30/116 (25%), Gaps = 18/116 (15%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           + ++QL +         +W ++ +++     L                            
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR------------------YFLG 57

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
               R  L  ++ AL+       ++ +  +      +  L L     A   F    
Sbjct: 58  LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 17  EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR 76
            + + ++  +   + L +   +  K  A+             +N   A  +L+ +D A+ 
Sbjct: 489 SDMQTAINHFQNALLLVKKTQSNEKPWAA-----------TWANLGHAYRKLKMYDAAID 537

Query: 77  DCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
              Q L + ++          + L      +A+    E+L
Sbjct: 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 9/68 (13%), Positives = 22/68 (32%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           +L +   L          +L +   A    + +  +       L   G +  + +    A
Sbjct: 435 RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494

Query: 109 LDCFKETL 116
           ++ F+  L
Sbjct: 495 INHFQNAL 502

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 7/60 (11%), Positives = 17/60 (28%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            L  +A+       F + L    + L+I+  +          L      +       + +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 9/68 (13%), Positives = 21/68 (30%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
            +      A    A + +   + D A+     A ++        L  G   + L    +A
Sbjct: 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460

Query: 109 LDCFKETL 116
            +  + + 
Sbjct: 461 NEYLQSSY 468

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 5/73 (6%), Positives = 17/73 (23%)

Query: 44  ASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN 103
           ++ L        +           +     A R   ++  ++     A +          
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421

Query: 104 RYSMALDCFKETL 116
            +  A+  +    
Sbjct: 422 EHDQAISAYTTAA 434

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 7/75 (9%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE-------SSHFKALLCKGKILLS 101
            L +   L L+          D   A+   + AL +                  G     
Sbjct: 469 ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528

Query: 102 LNRYSMALDCFKETL 116
           L  Y  A+D   + L
Sbjct: 529 LKMYDAAIDALNQGL 543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 10/99 (10%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 20  KESVQVYTQFIDLC--QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD 77
           ++S  +     D    +S+  +     +++ ++             +     + +     
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361

Query: 78  CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
               +          L  G   L +N+ S A   F ++ 
Sbjct: 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 25/120 (20%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAE 63
              +        +++++++   Y + I+L  S IT                    +N+A 
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT------------------FYNNKAA 50

Query: 64  ARSRLRDFDNALRDCEQALKIESSHF-------KALLCKGKILLSLNRYSMALDCFKETL 116
                + F   ++ CE+A+++            KA+   G      N  S+A+  F  +L
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 14/116 (12%), Positives = 32/116 (27%), Gaps = 18/116 (15%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           ++M  + S A +   +   +E+   +          +                    +  
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD------------------YIMG 75

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            A        F  A      A  +  + +  +   G+  L L     A +CF+  +
Sbjct: 76  LAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 17  EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR 76
            EWK + + +   ++  ++   E   +  +           L+N      +L+ +  AL 
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEP---------LLNNLGHVCRKLKKYAEALD 257

Query: 77  DCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
              QAL +   +       G I   +  +  A+D F   L
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 9/60 (15%), Positives = 20/60 (33%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            + + AE      DF    +     ++ +  H   L      L+ LN+ +       + +
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 48  SKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSM 107
           + L+K+   A      + +   + D A+     A ++       +L  G      N   +
Sbjct: 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177

Query: 108 ALDCFKETL 116
           A   F + L
Sbjct: 178 AERFFSQAL 186

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 13/68 (19%), Positives = 20/68 (29%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           +L K   L +           +   A R   QAL I       +   G +      +  A
Sbjct: 153 QLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTA 212

Query: 109 LDCFKETL 116
              F + L
Sbjct: 213 EKWFLDAL 220

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 12/57 (21%), Positives = 18/57 (31%)

Query: 60  NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
             A    +  DF+ A R C Q  + E  +   LL    I     R   +       +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 14/68 (20%), Positives = 29/68 (42%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           +L  +   +L+N A  +    + + A+R   +AL++      A      +L    +   A
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358

Query: 109 LDCFKETL 116
           L  +KE +
Sbjct: 359 LMHYKEAI 366

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 11/60 (18%), Positives = 19/60 (31%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
              N A         D A+    +A++++     A       L      + A DC+   L
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 12/68 (17%), Positives = 23/68 (33%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
            L  +   A  N        R FD A+    +AL +  +H         +        +A
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256

Query: 109 LDCFKETL 116
           +D ++  +
Sbjct: 257 IDTYRRAI 264

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 9e-07
 Identities = 13/68 (19%), Positives = 23/68 (33%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           +L+     A  N A A         A      AL++  +H  +L     I         A
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324

Query: 109 LDCFKETL 116
           +  +++ L
Sbjct: 325 VRLYRKAL 332

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 15/68 (22%), Positives = 26/68 (38%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           +LK        N A A     D + A++    AL+     +      G +L +L R   A
Sbjct: 95  RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154

Query: 109 LDCFKETL 116
             C+ + +
Sbjct: 155 KACYLKAI 162

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 8/60 (13%), Positives = 22/60 (36%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
             S+       L   + A     +A++ + +   A    G +  +     +A+  F++ +
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 9/60 (15%), Positives = 18/60 (30%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A SN             A+     AL+++       +     L++      A+  +   L
Sbjct: 69  AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 11/68 (16%), Positives = 28/68 (41%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
           + + +  +A SN     +   +   A+   E+A+ ++ +   A +  G +L     +  A
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222

Query: 109 LDCFKETL 116
           +  +   L
Sbjct: 223 VAAYLRAL 230

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 9/60 (15%), Positives = 20/60 (33%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            L   +    + R  D +      A+K      +A    G +     +   A++ ++  L
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQ---FIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           + L++        + W+ +++ YT+   +++  ++   +     ++L  +  S  L   N
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG--AKLQPVALSCVL---N 278

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV--- 117
               + ++ D+  A+  C +AL+I+ S+ KAL  + +    L  Y  AL   K+      
Sbjct: 279 IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338

Query: 118 -DAQASGSLETVNGFLEKSKKLE 139
            D      L  V   ++  K  E
Sbjct: 339 EDKAIQAELLKVKQKIKAQKDKE 361

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 9/68 (13%), Positives = 20/68 (29%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
               +                +F  A++  E+ ++  ++  K     G+       Y  A
Sbjct: 102 DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161

Query: 109 LDCFKETL 116
              F + L
Sbjct: 162 DSSFVKVL 169

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 5/68 (7%), Positives = 22/68 (32%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
              K+         +   +      A++  + A+  +++        G    +   + +A
Sbjct: 68  NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127

Query: 109 LDCFKETL 116
           +   ++ +
Sbjct: 128 IQYMEKQI 135

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 5/71 (7%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN---RY 105
           +   +         +A    +++  A     + L+++ + +   L + +   + +   + 
Sbjct: 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQ 195

Query: 106 SMALDCFKETL 116
            +A   +++ +
Sbjct: 196 GLAKPYYEKLI 206

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 21/111 (18%)

Query: 9   KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL 68
            A  L     + E+++V+ +                      K +     + RA     L
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLE------------------AKKYNSPYIYNRRAVCYYEL 50

Query: 69  RDFDNALRDCE---QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
             +D A +D E     +    +        GKIL+   + S+A+  ++  +
Sbjct: 51  AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 12  ELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF 71
                 +   +   Y + I++C          A   +K K  L  A    A   +  RD 
Sbjct: 188 AQDPDTKQGLAKPYYEKLIEVC----------APGGAKYKDELIEANEYIAYYYTINRDK 237

Query: 72  DNALRDCEQALKIESSHFKALLCKGKILLSLNRY 105
             A    +  L ++ ++ KA+      L   + +
Sbjct: 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 5/58 (8%), Positives = 17/58 (29%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKE 114
                A+   +  ++  A+    +    + +       +      L +Y +A    + 
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 8/60 (13%), Positives = 16/60 (26%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++    +  L      L    QA  +      A+        +L      L    +  
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH 303

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 8/60 (13%), Positives = 16/60 (26%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++    +  L      L    QA  +      A+        +L      L    +  
Sbjct: 312 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 371

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 21/131 (16%), Positives = 35/131 (26%), Gaps = 20/131 (15%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQI------------TETKQEASQLSKLK 51
             + S        E  +  + V  Q   L   Q+             ET Q    L  L 
Sbjct: 107 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQAL--LPVLC 164

Query: 52  KSLCL------ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRY 105
           ++  L      A+++    +  L      L    QA  +      A+   G    +L   
Sbjct: 165 QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETV 224

Query: 106 SMALDCFKETL 116
              L    +  
Sbjct: 225 QRLLPVLCQAH 235

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 10/60 (16%), Positives = 17/60 (28%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++    +  L      L    QA  +      A+   G    +L      L      L
Sbjct: 414 AIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPAL 473

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 9/60 (15%), Positives = 17/60 (28%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++    +  L      L    QA  +      A+   G    +L      L    +  
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 9/60 (15%), Positives = 18/60 (30%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++ +  +  L      L    QA  +      A+   G    +L      L    +  
Sbjct: 278 AIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 337

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 9/68 (13%), Positives = 18/68 (26%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
            L     +A+++    +  L      L    QA  +      A+        +L      
Sbjct: 66  NLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125

Query: 109 LDCFKETL 116
           L    +  
Sbjct: 126 LPVLCQAH 133

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 21/131 (16%), Positives = 35/131 (26%), Gaps = 20/131 (15%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLCQSQIT------------ETKQEASQLSKLK 51
             + S        E  +  + V  Q   L   Q+             ET Q    L  L 
Sbjct: 141 VAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRL--LPVLC 198

Query: 52  KSLCL------ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRY 105
           ++  L      A+++    +  L      L    QA  +      A+   G    +L   
Sbjct: 199 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETV 258

Query: 106 SMALDCFKETL 116
              L    +  
Sbjct: 259 QRLLPVLCQAH 269

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 20/129 (15%)

Query: 6   LRSKATELLLREEWKESVQVYTQFIDLCQSQIT------------ETKQEASQLSKLKKS 53
           + S        E  +  + V  Q   L   Q+             ET Q    L  L ++
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL--LPVLCQA 370

Query: 54  LCL------ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSM 107
             L      A+++    +  L      L    QA  +      A+        +L     
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQR 430

Query: 108 ALDCFKETL 116
            L    +  
Sbjct: 431 LLPVLCQAH 439

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 26/164 (15%), Positives = 44/164 (26%), Gaps = 21/164 (12%)

Query: 17  EEWKESVQVYTQFIDLCQSQIT------------ETKQEA----SQLSKLKKSLCLALSN 60
           E  +  + V  Q   L  +Q+             ET Q       Q   L     +A+++
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV--- 117
               +  L      L    QA  +      A+   G    +L      L    +      
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTP 325

Query: 118 -DAQASGSLETVNGFLEKSKK-LEYQSRTGALDLSDWILNGLRG 159
               A  S +     LE  ++ L    +   L     +     G
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 9/60 (15%), Positives = 17/60 (28%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++    +  L      L    QA  +      A+   G    +L      L    +  
Sbjct: 330 AIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 389

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 9/60 (15%), Positives = 17/60 (28%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++    +  L      L    QA  +      A+   G    +L      L    +  
Sbjct: 635 AIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 694

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 18/128 (14%), Positives = 31/128 (24%), Gaps = 15/128 (11%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDLC-----------QSQITETKQEA----SQLS 48
             + S        E  +  + V  Q   L              Q  ET Q       Q  
Sbjct: 363 VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAH 422

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
            L     +A+++    +  L      L    Q   +  +   A+        +L      
Sbjct: 423 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQL 482

Query: 109 LDCFKETL 116
           L    +  
Sbjct: 483 LPVLCQAH 490

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 8/60 (13%), Positives = 16/60 (26%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++    +  L      L    QA  +      A+        +L      L    +  
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH 626

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 16/127 (12%)

Query: 6   LRSKATELLLREEWKESVQVYTQFIDLCQSQIT------------ETKQEA----SQLSK 49
           + S        E  +  + V  Q   L   Q+             ET Q       Q   
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695

Query: 50  LKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMAL 109
           L +   +A+++    +  L      L    QA  +      A+   G    +L      L
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755

Query: 110 DCFKETL 116
               +  
Sbjct: 756 PVLCQAH 762

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 8/60 (13%), Positives = 16/60 (26%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A+++    +  L      L    QA  +      A+        +L      L    +  
Sbjct: 465 AIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAH 524

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 9/60 (15%), Positives = 15/60 (25%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A        +     D AL       + +  H  A    G           AL+   + +
Sbjct: 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 10/60 (16%), Positives = 19/60 (31%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
                     +L     AL   ++A+++  +  +A    G  L +      AL  F    
Sbjct: 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVT 186

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
              N A   S + + + AL   ++AL+++SS   A    G + +    Y  A D F++ L
Sbjct: 59  PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 10/60 (16%), Positives = 20/60 (33%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A             +  A    E+AL+    +       G +L+ L +  +AL   +  +
Sbjct: 93  AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 11/85 (12%), Positives = 28/85 (32%)

Query: 42  QEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLS 101
           ++A       K L             L ++  A       +K   +H    +    +L +
Sbjct: 14  EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN 73

Query: 102 LNRYSMALDCFKETLVDAQASGSLE 126
           L RY   ++   + + +     +++
Sbjct: 74  LGRYEQGVELLLKIIAETSDDETIQ 98

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 17/60 (28%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
            L  R      L     A  D  QAL I     +     G  L     +  A + F   L
Sbjct: 45  LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 8/124 (6%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
             +      ++  +FD A    +  L+++ ++  A L +G  L    R  +A D      
Sbjct: 79  VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138

Query: 117 V----DAQASGSLETVNGFLEKSKKLE-YQSRTGALDLSDWILNGL---RGKCPELAEYI 168
                D   S  L      L++ +  E  +      D   W  N +    G   E     
Sbjct: 139 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 198

Query: 169 GAVQ 172
               
Sbjct: 199 RLKA 202

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 11/66 (16%), Positives = 19/66 (28%)

Query: 49  KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA 108
            L + L        +    L D D+A    + A+     +F         L  L +    
Sbjct: 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268

Query: 109 LDCFKE 114
           L    +
Sbjct: 269 LAESDQ 274

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 12/116 (10%), Positives = 28/116 (24%), Gaps = 18/116 (15%)

Query: 1   ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN 60
           + ++QL S A        ++++  V+     L                            
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS------------------RFFLG 60

Query: 61  RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
               R  +  +D A+        ++    +      + LL     + A        
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 313 WALASFINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAY 354
                ++N +CS    N   + +   I     + +  GEE+   Y
Sbjct: 97  GNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY 141

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 34  QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALL 93
           Q  I E  +   +  ++      A SN A    +      AL   ++A++I  +   A  
Sbjct: 22  QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81

Query: 94  CKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139
             G  L  +     AL C+   + ++   + +   +    + S  + 
Sbjct: 82  NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           +L+N A  +    + + A+R   +AL++      A      +L    +   AL  +KE +
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 318 FINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAY 354
           +I  + +    N   V +G  I   A   +   +E+   Y
Sbjct: 104 YIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWY 143

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 1   ELMQQLRSKATEL-LLREEWKES---VQVYTQFIDLCQSQITETKQEASQLSKLKKSLCL 56
            ++Q+L+     L   R+ + E+        +  D+ Q ++ +T Q+  ++    +    
Sbjct: 45  HVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDV-QEEMEKTLQQMEEVLGSAQVEAQ 103

Query: 57  ALSNRAEARSRLRDFDN-ALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKET 115
           AL  + +A +   D+   A     +A+K+E    +A    G++       + A  CF   
Sbjct: 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163

Query: 116 L 116
           L
Sbjct: 164 L 164

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 14/74 (18%), Positives = 30/74 (40%)

Query: 42  QEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLS 101
            +A ++ +   S      NRA        +  AL    QA  ++ +  +    + ++L  
Sbjct: 245 AQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF 304

Query: 102 LNRYSMALDCFKET 115
           L+R +  L+   +T
Sbjct: 305 LSRLTSLLESKGKT 318

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 3/42 (7%)

Query: 316 ASFINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAY 354
             F+  + +    N         I    S+D+    E+ F Y
Sbjct: 98  MMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYY 139

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 7/83 (8%)

Query: 41  KQEASQLSKL---KKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK----ALL 93
               SQ         S+CL L+   E      D    +   + A++  +   +       
Sbjct: 31  HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90

Query: 94  CKGKILLSLNRYSMALDCFKETL 116
             G     L  Y+ A+   K  L
Sbjct: 91  QLGNAYFYLGDYNKAMQYHKHDL 113

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
             +       +++ +D A+    +  +    +F      G  L +L R+  A+D FK  L
Sbjct: 78  VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 8/60 (13%), Positives = 19/60 (31%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
              +   A  +    D      E++L     + K     G   + + +Y +A+    +  
Sbjct: 44  VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 9/83 (10%), Positives = 23/83 (27%)

Query: 34  QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALL 93
           Q  ++ +++     ++               R +  D    +   E A+  +    +A  
Sbjct: 44  QVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQ 103

Query: 94  CKGKILLSLNRYSMALDCFKETL 116
             G           A+   +  L
Sbjct: 104 FLGITQAENENEQAAIVALQRCL 126

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 8/60 (13%), Positives = 24/60 (40%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A       ++   +   A+   ++ L+++ ++ KAL+       + +    A +  K  +
Sbjct: 101 AWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 11/60 (18%), Positives = 21/60 (35%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
                   R +  D  NA+   E A++ +  H +A    G       +  +A+   +  L
Sbjct: 66  QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 125

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 10/60 (16%), Positives = 23/60 (38%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
              N     + L++   A +   +++  +     A   +G +     +Y +A+   KE L
Sbjct: 39  ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 98

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 9/57 (15%), Positives = 19/57 (33%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFK 113
           A  N+    ++   F  A    +++L  +     A     +  +   +   A   FK
Sbjct: 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFK 171

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 56  LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKET 115
                 A+   +  +   AL   E+ ++ +  +       GK+   L+R   A+D + + 
Sbjct: 8   FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 116 L------VDAQASGSLETVNGFLEKSKKLEYQ 141
           +         +    L+       K++ LE+ 
Sbjct: 68  IEVAREEGTQKDLSELQD---AKLKAEGLEHH 96

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 7/94 (7%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
              N      +++    A    E++L++  +     L    +L     Y  A   +    
Sbjct: 143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202

Query: 117 ----VDAQA---SGSLETVNGFLEKSKKLEYQSR 143
                +A++      L  V    + +     Q +
Sbjct: 203 QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 7/61 (11%), Positives = 19/61 (31%)

Query: 56  LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKET 115
           L + +     +   ++         AL++  +  +     G +    N Y  A    +  
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198

Query: 116 L 116
           +
Sbjct: 199 V 199

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 6/60 (10%), Positives = 14/60 (23%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
                  +  +L +   A    E   +      +A    G       +  +A+       
Sbjct: 23  NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR 82

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 6/60 (10%), Positives = 16/60 (26%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A  +    ++       A+     A  ++               + +  + AL   +  L
Sbjct: 57  AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 116

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A  N   A  +  D+D A+   ++AL+++    +A    G        Y  A++ +++ L
Sbjct: 37  AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.5 bits (91), Expect = 9e-04
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A  N   A  +  D+D A+   ++AL+++    +A    G        Y  A++ +++ L
Sbjct: 71  AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A  N   A  +  D+D A+   ++AL+++ ++ +A    G        Y  A++ +++ L
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A  N   A  +  D+D A+   ++AL+++ ++ +A    G        Y  A++ +++ L
Sbjct: 45  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 318 FINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAY 354
           ++N + SP   N      G  I  +  + + A +E+   Y
Sbjct: 134 YVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWY 173

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 10/60 (16%), Positives = 24/60 (40%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A    A+A   + D        ++ L +   H +A+   G++  +  R++ A    ++  
Sbjct: 25  AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 51  KKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK----ALLCKGKILLSLNRYS 106
            ++ CL L+   E   +  D    +   E A+++ +   K         G     L+ Y+
Sbjct: 5   MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 64

Query: 107 MALDCFKETLVDAQASG 123
            AL+     L  A+  G
Sbjct: 65  KALEYHHHDLTLARTIG 81

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 55  CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK----ALLCKGKILLSLNRYSMALD 110
           CL L+   E   +  D    +   E A+++ +   K         G     L+ Y+ AL+
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64

Query: 111 CFKETL 116
                L
Sbjct: 65  YHHHDL 70

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 6/60 (10%), Positives = 16/60 (26%)

Query: 57  ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
           A  +    ++       A+     A  ++               + +  + AL   +  L
Sbjct: 53  AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 7/57 (12%), Positives = 15/57 (26%)

Query: 60  NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
               +  +L +   A    E   + E    +A    G       +  +A+       
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152

 Score = 38.9 bits (90), Expect = 9e-04
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 313 WALASFINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAY 354
                F+  + +    N      G ++     ++V+  +E+   Y
Sbjct: 94  CNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWY 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	518
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.97
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.97
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.97
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.77
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.71
3rq4_A	247	Histone-lysine N-methyltransferase SUV420H2; suppr	99.71
1n3j_A	119	A612L, histone H3 lysine methyltransferase; beta b	99.69
3s8p_A	273	Histone-lysine N-methyltransferase SUV420H1; SET d	99.69
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.64
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.6
2w5y_A	192	Histone-lysine N-methyltransferase HRX; transcript	99.58
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.56
3ope_A	222	Probable histone-lysine N-methyltransferase ASH1L;	99.55
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	99.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.55
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.54
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.52
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.52
3f9x_A	166	Histone-lysine N-methyltransferase SETD8; methyltr	99.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.48
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.48
3h6l_A	278	Histone-lysine N-methyltransferase SETD2; SET doma	99.46
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.46
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.44
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.42
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.42
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.41
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.41
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.41
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.4
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.39
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.38
3hna_A	287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	99.38
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.37
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.36
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.36
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.34
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.34
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.33
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.33
1ml9_A	302	Histone H3 methyltransferase DIM-5; adoMet-depende	99.33
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.31
3bo5_A	290	Histone-lysine N-methyltransferase setmar; SET dom	99.31
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.28
1mvh_A	299	Cryptic LOCI regulator 4; lysine methyltransferase	99.28
2f69_A	261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.28
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.27
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.26
2r3a_A	300	Histone-lysine N-methyltransferase SUV39H2; histon	99.23
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.23
1h3i_A	293	Histone H3 lysine 4 specific methyltransferase; 2.	99.21
3smt_A	497	Histone-lysine N-methyltransferase SETD3; histone	99.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.2
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.2
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.19
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.18
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.17
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.16
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.16
2qpw_A	149	PR domain zinc finger protein 2; methyltransferase	99.15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.13
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.13
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.13
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.12
3qxy_A	449	N-lysine methyltransferase SETD6; epigenetics, pro	99.12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.12
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.12
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.1
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.1
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.09
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.04
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.03
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.02
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.02
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.02
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.02
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.02
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.01
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.01
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.01
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.01
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.01
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.01
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.0
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.99
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.99
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.98
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.97
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.94
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.92
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.86
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.84
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.84
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.83
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.82
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.82
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.82
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.82
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.81
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.8
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.8
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.79
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.79
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.78
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.78
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.78
2h21_A	440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	98.77
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.77
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.77
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.76
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.76
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.76
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.75
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.75
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.75
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.74
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.73
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.73
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.73
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.72
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.71
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.69
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.67
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.67
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.66
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.66
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.65
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.65
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.64
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.63
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.62
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.62
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.61
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.61
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.61
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.57
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.57
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.56
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.55
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.54
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.53
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.52
3ep0_A	170	PR domain zinc finger protein 12; PR domain-contai	98.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.5
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.5
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.49
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.44
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.42
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.41
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.41
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.3
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.3
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.2
3dal_A	196	PR domain zinc finger protein 1; methyltransferase	98.15
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.12
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.1
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.07
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.04
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.02
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.0
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.94
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.87
3db5_A	151	PR domain zinc finger protein 4; methyltransferase	97.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.75
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.74
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.71
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.67
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.66
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.62
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.6
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.6
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.55
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.24
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.21
3ihx_A	152	PR domain zinc finger protein 10; PRDM10, methyltr	97.16
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.13
3ray_A	237	PR domain-containing protein 11; structural genomi	97.03
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.91
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.68
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.57
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.57
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.46
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.4
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.39
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.17
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.05
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.91
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.78
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.17
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.19
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.68
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	92.15
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	92.02
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.87
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.82
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.73
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.38
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.34
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.85
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.56
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.36
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	86.85
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	85.59
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	85.43
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	85.09
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	82.11
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.61
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	80.6

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.97  E-value=1.3e-31  Score=280.20  Aligned_cols=208  Identities=23%  Similarity=0.411  Sum_probs=147.4

Q ss_pred             ceEEeecCCCccEEEEeccCCCCcEEEEeccceecccc-----CC------------C------CCCchhHhHHhHHHHH
Q 035535          170 AVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGI-----LS------------G------ENSNENEQLVMWKNFI  226 (518)
Q Consensus       170 ~~~i~~~~~~Grg~~a~~~i~~GelIl~e~p~~~~~~~-----~~------------~------~~~~~~~~~~~~~~~~  226 (518)
                      .++...++++|||++||++|++||+|+.|+|++.+...     .+            .      .||+..||...|+.+.
T Consensus         6 ~i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk   85 (429)
T 3qwp_A            6 KVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHK   85 (429)
T ss_dssp             SEEEEECSSSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHH
T ss_pred             ceeecccCCCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhH
Confidence            56677799999999999999999999999999865321     00            0      1788899999998665


Q ss_pred             HHHHHh--hh-hcH-H----HHHHHHHhhcCCCC--CCc-CCc----ccccCCchhhh------------hhc-------
Q 035535          227 DKVMES--IS-KCQ-R----TRHLISILSSGDNE--DEV-EVP----DVSAFRPEAEE------------RRS-------  272 (518)
Q Consensus       227 ~~~~~~--~~-~~~-~----~~~~i~~L~~~~~~--~~~-~~~----~~~~~~~~~~~------------~~~-------  272 (518)
                      .+|...  .. ..| .    ..+++..+..+...  +.+ .+.    +...+.+....            .+.       
T Consensus        86 ~eC~~~~~~~~~~~~~~~rl~~rill~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (429)
T 3qwp_A           86 RECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQ  165 (429)
T ss_dssp             HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSCCCGGGSSSCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGG
T ss_pred             HhhhhHHhcCccCCChHHHHHHHHHHHHhcCCCCchhhhhhHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCcccc
Confidence            555321  11 111 1    12223333222111  111 110    11111111100            011       


Q ss_pred             ccccchhhhhhhhccccccchhhhhhhhhCCCCCcceeEeecccccccCCCCCCceEEeeCCEEEEEEcCCCCCCCeEEe
Q 035535          273 SNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITF  352 (518)
Q Consensus       273 ~~~~~d~~~~~~i~~~N~f~~~~~~~~~~g~~~~~~~~gl~~~~s~~NHsC~PN~~~~~~~~~~~v~A~rdI~~Geeit~  352 (518)
                      .....++..+++++.+|+|++..       ......|.||||.+|++||||.|||.+.|+|..++|+|+|||++||||||
T Consensus       166 ~~~~~~~~~~~~~~~~N~f~i~~-------~~~~~~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~i  238 (429)
T 3qwp_A          166 LPPAFDLFEAFAKVICNSFTICN-------AEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTI  238 (429)
T ss_dssp             SCTTCCHHHHHHHHHHHCEEEEC-------TTSCEEEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEE
T ss_pred             CCCHHHHHHHHHHHHhcCccccc-------cccccceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEE
Confidence            11234688999999999998641       22335689999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHH-hcccCCeEeecCCCCCCC
Q 035535          353 AYFDMLLPLEKRKE-MSKTWGFHCKCKRCKFEE  384 (518)
Q Consensus       353 sY~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~~  384 (518)
                      ||++..+++.+||+ |.+.|+|.|.|++|.++.
T Consensus       239 sY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~  271 (429)
T 3qwp_A          239 CYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD  271 (429)
T ss_dssp             CCSCSSCCHHHHHHHHHHHHCCCCCSHHHHHTT
T ss_pred             EecCCCCCHHHHHHHHhccCCeEeeCCCCCCCc
Confidence            99999999999997 778999999999999885

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.97  E-value=4.2e-31  Score=280.36  Aligned_cols=210  Identities=21%  Similarity=0.356  Sum_probs=147.7

Q ss_pred             cCceEEeecCCCccEEEEeccCCCCcEEEEeccceeccc-----c------------CCC------CCCchhHhHHhHHH
Q 035535          168 IGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERG-----I------------LSG------ENSNENEQLVMWKN  224 (518)
Q Consensus       168 ~~~~~i~~~~~~Grg~~a~~~i~~GelIl~e~p~~~~~~-----~------------~~~------~~~~~~~~~~~~~~  224 (518)
                      ...+++..++++|||++||++|++||+|+.|+|++++..     .            .+.      .+|+..|+...|..
T Consensus         6 ~~~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~   85 (490)
T 3n71_A            6 MENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLN   85 (490)
T ss_dssp             CTTEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHH
T ss_pred             CCceEEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhH
Confidence            457999999999999999999999999999999974310     0            001      17888999999986


Q ss_pred             HHHHHHH--hhhhcHH-----HHHHHHHhhcCCC--C-CCc-CC----cccccCCchhhh------------hh---ccc
Q 035535          225 FIDKVME--SISKCQR-----TRHLISILSSGDN--E-DEV-EV----PDVSAFRPEAEE------------RR---SSN  274 (518)
Q Consensus       225 ~~~~~~~--~~~~~~~-----~~~~i~~L~~~~~--~-~~~-~~----~~~~~~~~~~~~------------~~---~~~  274 (518)
                      +..+|..  .....|.     ..+++........  . ..+ .+    .+...+.+....            .+   ...
T Consensus        86 Hk~eC~~~~~~~~~p~~~~rl~lRiL~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (490)
T 3n71_A           86 HKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQF  165 (490)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSBCTTCSSBGGGSCCCGGGCCHHHHHHHHHHHHHHHHHSCTTSCCC
T ss_pred             HHHHhHHHHhcCcCCCHHHHHHHHHHHHhhccCccCcchhhhHHHHHHhhhhhcCchHHHHHHHHHHHHHHHccccccCC
Confidence            6555532  1111221     1222322221111  0 000 00    011112211100            01   112


Q ss_pred             ccchhhhhhhhccccccchhhhhhhhhCCCC-CcceeEeecccccccCCCCCCceEEeeCC-------------EEEEEE
Q 035535          275 EKLDMGKILSILDVNSLVEDAISAKVLGKNK-GLYGLGLWALASFINHSCSPNARRVHVGD-------------YIIVHA  340 (518)
Q Consensus       275 ~~~d~~~~~~i~~~N~f~~~~~~~~~~g~~~-~~~~~gl~~~~s~~NHsC~PN~~~~~~~~-------------~~~v~A  340 (518)
                      ...++..+++++.+|+|++..       ..+ ...|.||||.+|++||||.|||.+.|+++             .++|+|
T Consensus       166 ~~~~l~~~~~~~~~N~f~i~~-------~~g~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A  238 (490)
T 3n71_A          166 SMQYISHIFGVINCNGFTLSD-------QRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRA  238 (490)
T ss_dssp             CHHHHHHHHHHHHTTEEEEEC-------TTSCSEEEEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEE
T ss_pred             CHHHHHHHHHHHhccCccccc-------CCCCccceEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEE
Confidence            334578899999999998641       122 35789999999999999999999999987             999999


Q ss_pred             cCCCCCCCeEEeecCCCCCCHHHHHH-hcccCCeEeecCCCCCCC
Q 035535          341 SRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFHCKCKRCKFEE  384 (518)
Q Consensus       341 ~rdI~~Geeit~sY~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~~  384 (518)
                      +|||++||||||||++..+++.+||+ |.+.|+|.|.|++|..+.
T Consensus       239 ~rdI~~GEEltisY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~  283 (490)
T 3n71_A          239 LGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGL  283 (490)
T ss_dssp             SSCBCTTCBCEECSSCSCSCHHHHHHHHHHHHSSCCCCHHHHHTT
T ss_pred             CCCCCCCCEEEEeecCCCCCHHHHHHHHHCCCCeEeeCCCCCCCC
Confidence            99999999999999999999999997 778999999999999886

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.97  E-value=1.1e-31  Score=280.59  Aligned_cols=209  Identities=18%  Similarity=0.339  Sum_probs=146.9

Q ss_pred             CceEEeecCCCccEEEEeccCCCCcEEEEeccceecccc-----------------CCC------CCCchhHhHHhHHHH
Q 035535          169 GAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGI-----------------LSG------ENSNENEQLVMWKNF  225 (518)
Q Consensus       169 ~~~~i~~~~~~Grg~~a~~~i~~GelIl~e~p~~~~~~~-----------------~~~------~~~~~~~~~~~~~~~  225 (518)
                      ..+++..+|++|||++||++|++||+|+.|+|++.+...                 .+.      .||+..||...|..+
T Consensus         7 ~~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~H   86 (433)
T 3qww_A            7 GGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLH   86 (433)
T ss_dssp             TTEEEEECTTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHH
T ss_pred             CcEEEeecCCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHH
Confidence            468899999999999999999999999999999854310                 001      178889999999766


Q ss_pred             HHHHHHhhh--h--cH-H-H---HHHHHHhhcC-C-CCC-Cc-CC----cccccCCchhhh------------hhc---c
Q 035535          226 IDKVMESIS--K--CQ-R-T---RHLISILSSG-D-NED-EV-EV----PDVSAFRPEAEE------------RRS---S  273 (518)
Q Consensus       226 ~~~~~~~~~--~--~~-~-~---~~~i~~L~~~-~-~~~-~~-~~----~~~~~~~~~~~~------------~~~---~  273 (518)
                      ..+|.....  .  .| . .   .+++...... . ... .+ .+    .+.+.+.+....            .+.   .
T Consensus        87 k~eC~~l~~~~~~~~p~~~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  166 (433)
T 3qww_A           87 KLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEF  166 (433)
T ss_dssp             TTTHHHHHHSSTTCCCCHHHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHhCccCCCcHHHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhcccCC
Confidence            555432111  0  11 1 1   1222221111 1 000 00 00    111112211100            011   1


Q ss_pred             cccchhhhhhhhccccccchhhhhhhhhCCCCCcceeEeecccccccCCCCCCceEEeeCCEEEEEEcCCCCCCCeEEee
Q 035535          274 NEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFA  353 (518)
Q Consensus       274 ~~~~d~~~~~~i~~~N~f~~~~~~~~~~g~~~~~~~~gl~~~~s~~NHsC~PN~~~~~~~~~~~v~A~rdI~~Geeit~s  353 (518)
                      ....++..+++++.+|+|++..       ......|.||||.+|++||||.|||.+.|++..+.|+|+|||++|||||||
T Consensus       167 ~~~~~i~~~~~~~~~N~f~i~~-------~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~  239 (433)
T 3qww_A          167 PDHSSLVVLFAQVNCNGFTIED-------EELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTS  239 (433)
T ss_dssp             CCHHHHHHHHHHHHHHCEEEEC-------TTCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEEC
T ss_pred             CCHHHHHHHHHHHcCCceeccc-------CCccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEe
Confidence            1234578889999999998642       223356899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHH-hcccCCeEeecCCCCCCC
Q 035535          354 YFDMLLPLEKRKE-MSKTWGFHCKCKRCKFEE  384 (518)
Q Consensus       354 Y~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~~  384 (518)
                      |++..+++.+||+ |.+.|||.|.|++|.+++
T Consensus       240 Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~  271 (433)
T 3qww_A          240 YIDLLYPTEDRNDRLRDSYFFTCECRECTTKD  271 (433)
T ss_dssp             CSCTTSCHHHHHHHHHHHHSCCCCSHHHHHCT
T ss_pred             ecCCcCCHHHHHHHHhCcCCEEeECCCCCCCC
Confidence            9999999999997 778999999999999886

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=4.8e-19  Score=153.11  Aligned_cols=110  Identities=24%  Similarity=0.450  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.++++|+.+|+.|+|++|+..|++||+++|.++.                  +|.|+|.++.++|++++|+.++++|
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI------------------LYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHhhHHHhhccHHHHHHHHHHH
Confidence            5788999999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVN  129 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~  129 (518)
                      ++++|+++++|+++|.++..+|+|++|+++|++++ .+|+++.....+.
T Consensus        74 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           74 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            99999999999999999999999999999999999 8887655444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.77  E-value=4.9e-18  Score=151.47  Aligned_cols=132  Identities=20%  Similarity=0.188  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+++.|+.+++.|+|++|+..|++||+++|+++...   +.+   .......+|+|+|.++.++|+|++|+.++++|
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~---~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFD---HAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCC---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhh---hccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            467899999999999999999999999999999954311   000   00112349999999999999999999999999


Q ss_pred             Hhc-------CCCchHHH----HHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           82 LKI-------ESSHFKAL----LCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        82 l~l-------~p~~~ka~----~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      |++       +|++.++|    |++|.++..+|+|++|+.+|++++ ..|++......+..+.+..+...
T Consensus        84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~  153 (159)
T 2hr2_A           84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI  153 (159)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHH
T ss_pred             HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            999       99999999    999999999999999999999999 89998877666666665554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.71  E-value=5.7e-17  Score=145.41  Aligned_cols=135  Identities=19%  Similarity=0.248  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++++|+.+++.|+|++|+..|++||.+.+.......++..+..........+|+|+|.|++++|+|++|+.++++|
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            46789999999999999999999999999995543221111111111222233459999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      ++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++   ..+...+..+++..
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA---SVVAREMKIVTERR  145 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 777654   24455555554443

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}

Probab=99.71  E-value=7.1e-18  Score=160.60  Aligned_cols=67  Identities=34%  Similarity=0.670  Sum_probs=58.8

Q ss_pred             eeEeecc-cccccCCCCCCceEEee-CCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCCCC
Q 035535          309 GLGLWAL-ASFINHSCSPNARRVHV-GDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEE  384 (518)
Q Consensus       309 ~~gl~~~-~s~~NHsC~PN~~~~~~-~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~~~  384 (518)
                      ..++|+. ++++||||.|||...+. +.++.|+|+|||++|||||++|++.++.         .++|.|.|.+|..+.
T Consensus       169 ~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~~~---------~~~f~C~C~~C~~~~  237 (247)
T 3rq4_A          169 SAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFG---------EKNEHCECHTCERKG  237 (247)
T ss_dssp             EEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTSSS---------GGGTTCCCHHHHHHT
T ss_pred             cceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchhcC---------CCCCEEECCCCCCCC
Confidence            4688887 78999999999987765 5799999999999999999999998764         468999999998764

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*

Probab=99.69  E-value=3e-17  Score=140.33  Aligned_cols=53  Identities=26%  Similarity=0.295  Sum_probs=47.2

Q ss_pred             eeEeecccccccCCCCCCceEEee--CCEEEEEEcCCCCCCCeEEeecCCCCCCH
Q 035535          309 GLGLWALASFINHSCSPNARRVHV--GDYIIVHASRDVKAGEEITFAYFDMLLPL  361 (518)
Q Consensus       309 ~~gl~~~~s~~NHsC~PN~~~~~~--~~~~~v~A~rdI~~Geeit~sY~~~~~~~  361 (518)
                      +..+++.++++||||.|||...++  +.++.++|+|||++|||||++|.+..+..
T Consensus        58 ~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~  112 (119)
T 1n3j_A           58 SAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLS  112 (119)
T ss_dssp             EEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCCCCC
T ss_pred             cccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchhhcC
Confidence            456788999999999999999887  34899999999999999999999987764

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}

Probab=99.69  E-value=1.2e-17  Score=160.59  Aligned_cols=60  Identities=38%  Similarity=0.646  Sum_probs=52.8

Q ss_pred             ccccccCCCCCCceEEeeCC-EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCCC
Q 035535          315 LASFINHSCSPNARRVHVGD-YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFE  383 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~~~~-~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~~  383 (518)
                      .++++||||.|||...+++. ++.|+|+|||++|||||++|++..+.         .++|.|.|.+|...
T Consensus       205 ~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~---------~~~f~C~C~~c~cr  265 (273)
T 3s8p_A          205 PAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFG---------ENNEFCECYTCERR  265 (273)
T ss_dssp             GGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTTTS---------GGGTTCCCHHHHHH
T ss_pred             hHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchhcC---------CCCeEEECCCCcCC
Confidence            46899999999999888875 99999999999999999999988764         35799999999654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.68  E-value=1.2e-16  Score=138.05  Aligned_cols=100  Identities=20%  Similarity=0.280  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++++|+.+++.|+|++|+..|++||+++|+++.                  +|.|+|.+|+++|+|++|+.+++++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~------------------~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT------------------FYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            4678999999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCc-------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           82 LKIESSH-------FKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        82 l~l~p~~-------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ++++|++       .++|+++|.++..+|+|++|+++|++++ ..|
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            9998876       4689999999999999999999999999 444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=8.4e-16  Score=131.44  Aligned_cols=100  Identities=25%  Similarity=0.488  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+..+|+.+++.|+|++|+..|++++.++|.++.                  ++.++|.++.++|+|++|+.+++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR------------------GYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5788999999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ++++|+++.+|+.+|.++..+|++++|+.+|++++ ..|
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  103 (126)
T 3upv_A           65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA  103 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999 773

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.64  E-value=1.2e-15  Score=136.17  Aligned_cols=101  Identities=14%  Similarity=0.176  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      +++.+...|..+++.|+|++|+..|++++.++|+++.                  +|.++|.++..+|+|++|+..+++|
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~------------------~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD------------------YIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHHccHHHHHHHHHHH
Confidence            5678999999999999999999999999999999887                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      ++++|+++.+|+++|.+|..+|++++|+.+|++++ ..|+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999 6654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.62  E-value=6.2e-15  Score=132.29  Aligned_cols=104  Identities=22%  Similarity=0.329  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+..+|+.++..|+|++|+..|++++.++|.++.                  +|+++|.+++++|+|++|+.+++++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~a   71 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI------------------YLSNRAAAYSASGQHEKAAEDAELA   71 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ++++|+++.+|+.+|.+|..+|+|++|+.+|++++ ..|+++.
T Consensus        72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            99999999999999999999999999999999999 8888776

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=1e-14  Score=127.89  Aligned_cols=119  Identities=11%  Similarity=0.104  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|++++..+|.++.                  +|.++|.++..+|+|++|+..++++
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR------------------YFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4567889999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      ++++|+++.+++.+|.+|..+|++++|+.+|++++ ..|+++............++.+
T Consensus        79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 8887776644444433333333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.60  E-value=9.4e-15  Score=129.60  Aligned_cols=105  Identities=12%  Similarity=0.091  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|++++.++|.++.                  +|.++|.++..+|+|++|+..++++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR------------------FFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH------------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4567889999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++++|+++.+++.+|.+|..+|++++|+.+|++++ ..|++|..
T Consensus        82 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            99999999999999999999999999999999999 78876655

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*

Probab=99.58  E-value=1.2e-14  Score=134.05  Aligned_cols=60  Identities=35%  Similarity=0.652  Sum_probs=45.1

Q ss_pred             ccccccCCCCCCceEEe--eCC--EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeec--CCCCC
Q 035535          315 LASFINHSCSPNARRVH--VGD--YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKC--KRCKF  382 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~--~~~--~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C--~~C~~  382 (518)
                      .++++||||.|||...+  .++  ++.|+|+|||++|||||++|....+..        .+.|.|.|  +.|+.
T Consensus       124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~--------~~~~~C~Cgs~~Crg  189 (192)
T 2w5y_A          124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA--------SNKLPCNCGAKKCRK  189 (192)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC---------------CCBCCCCCTTCCS
T ss_pred             hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcC--------CCCceeECCCCCCcC
Confidence            46889999999998653  233  899999999999999999999876532        37899999  57763

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.56  E-value=5.1e-14  Score=121.39  Aligned_cols=119  Identities=20%  Similarity=0.308  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|++++..+|.++.                  ++.++|.++..+|+|++|+..++++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a   69 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV------------------YYTNRALCYLKMQQPEQALADCRRA   69 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4678999999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC-cHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG-SLETVNGFLEKSKKL  138 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~-~~~~l~~~l~~~~~~  138 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|++++ ..|++.. ....+...+..++..
T Consensus        70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 7776321 124455555555443

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}

Probab=99.55  E-value=1.6e-14  Score=136.95  Aligned_cols=61  Identities=36%  Similarity=0.554  Sum_probs=47.8

Q ss_pred             ccccccCCCCCCceEEe--eCC--EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecC--CCCCC
Q 035535          315 LASFINHSCSPNARRVH--VGD--YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCK--RCKFE  383 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~--~~~--~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~--~C~~~  383 (518)
                      .+.++||||.||+....  +++  ++.|+|+|||++|||||++|....+..        ...|.|.|.  .|+.-
T Consensus       146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~--------~~~~~C~CGs~~Crg~  212 (222)
T 3ope_A          146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNV--------EKQQLCKCGFEKCRGI  212 (222)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCC--------SCCCBCCCCCTTCCSB
T ss_pred             cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCC--------cCCCEeeCCCcCCCCc
Confidence            36789999999998664  333  899999999999999999999876542        245777774  68754

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}

Probab=99.55  E-value=1.6e-14  Score=137.67  Aligned_cols=58  Identities=38%  Similarity=0.636  Sum_probs=46.8

Q ss_pred             ccccccCCCCCCceEEe--eC--CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeec--CCCC
Q 035535          315 LASFINHSCSPNARRVH--VG--DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKC--KRCK  381 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~--~~--~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C--~~C~  381 (518)
                      .+.++||||.||+....  ++  .++.|+|+|||++|||||++|....+.         .+.|.|.|  +.|+
T Consensus       165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~---------~~~~~C~CGs~~Cr  228 (232)
T 3ooi_A          165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLG---------NGKTVCKCGAPNCS  228 (232)
T ss_dssp             GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTT---------CTTCBCCCCCTTCC
T ss_pred             ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCC---------CCCcEeECCCCcCc
Confidence            46789999999998753  33  389999999999999999999886543         35688988  4565

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.55  E-value=5.6e-14  Score=148.10  Aligned_cols=137  Identities=20%  Similarity=0.274  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++++|+.+++.|+|++|+..|++|+.++|.+...   ..+...........+|+|+|.|++++|+|++|+.+|++|
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~---~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL---SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC---CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC---ChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35688999999999999999999999999999987421   112222334445669999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      ++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++.....+..++...++.++.
T Consensus       344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 8898888877777777777665543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.54  E-value=2.2e-14  Score=127.37  Aligned_cols=104  Identities=8%  Similarity=-0.013  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..+++.|+|++|+..|+++|+++|+++.                  +|.++|.++.++|++++|+..+++++
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~~~~~~A~~~~~~al   92 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK------------------AHRFLGLLYELEENTDKAVECYRRSV   92 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            344567888888889999999999999988888876                  88888999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHH-HHHHH-hccccCCc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDC-FKETL-VDAQASGS  124 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~-~~~al-~~p~~~~~  124 (518)
                      +++|+++.+|+.+|.+|..+|++++|.+. +++++ .+|+++..
T Consensus        93 ~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~  136 (150)
T 4ga2_A           93 ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV  136 (150)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence            99998888888999888888888877766 47888 77766543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.53  E-value=9.4e-14  Score=140.34  Aligned_cols=137  Identities=15%  Similarity=0.257  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+..+|+.+++.|+|++|+..|++|+.+.|.+....   .+...........+|.|+|.+++++|+|++|+.++++|
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            467889999999999999999999999999999874211   11222333444569999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      ++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++.....+..++...++..+.
T Consensus       223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 8887776666677766666655543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.52  E-value=1e-13  Score=128.37  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|+.++..|+|++|+..|.+++.+.|.++........  .........++.|+|.+++++|+|++|+.+++++
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            46778999999999999999999999999998886521111000  0111223348999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK  137 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~  137 (518)
                      ++++|+++++++++|.++..+|+|++|+..|++++ ..|+++.....+..+....++
T Consensus       115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A          115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 777665554555554444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.52  E-value=1.1e-13  Score=141.94  Aligned_cols=138  Identities=18%  Similarity=0.309  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++.+|+.+++.|+|++|+..|++|+++.+..+.  ....++..++......+|.|+|.+++++|+|++|+.++++|
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA--AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--HSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc--ccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            3567899999999999999999999999997665421  00111111222233459999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      ++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++.....+..+....++.++.
T Consensus       300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 8887666556666666555554433

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*

Probab=99.51  E-value=3.1e-14  Score=129.00  Aligned_cols=49  Identities=35%  Similarity=0.439  Sum_probs=39.7

Q ss_pred             cccccCCCCCCceEE--eeCC--EEEEEEcCCCCCCCeEEeecCCCCCCHHHH
Q 035535          316 ASFINHSCSPNARRV--HVGD--YIIVHASRDVKAGEEITFAYFDMLLPLEKR  364 (518)
Q Consensus       316 ~s~~NHsC~PN~~~~--~~~~--~~~v~A~rdI~~Geeit~sY~~~~~~~~~R  364 (518)
                      +.++||||.|||...  ++++  ++.++|+|||++|||||++|.+.......+
T Consensus       108 aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~  160 (166)
T 3f9x_A          108 GRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIEA  160 (166)
T ss_dssp             GGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCHHHHHH
T ss_pred             hheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChhhHhhh
Confidence            578999999998765  3343  799999999999999999999876544333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.50  E-value=1.1e-13  Score=118.24  Aligned_cols=101  Identities=9%  Similarity=0.013  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+..+|..+++.|++++|+..|.+++..+|+++.                  +|+++|.++..+|++++|+..+++|++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~al~   79 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE------------------AWRSLGLTQAENEKDGLAIIALNHARM   79 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35778999999999999999999999999999877                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++|+++.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus        80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            999999999999999999999999999999999 777543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=2.3e-13  Score=127.46  Aligned_cols=113  Identities=14%  Similarity=0.154  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHH----------------HHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN----------------RAEAR   65 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~n----------------ra~a~   65 (518)
                      .++.+..+|..++..|+|++|+..|++++..+|+++.                  ++++                +|.++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~~~~~~~~~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE------------------MYYWTNVDKNSEISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH------------------HHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------------------HHHHhhhcchhhhhHHHHHHHHHHH
Confidence            4678899999999999999999999999999998866                  5666                99999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           66 SRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        66 ~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      .++|++++|+..++++++++|+++.+++.+|.++..+|++++|+.+|++++ .+|+++.....+...+
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 8888776665555554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.48  E-value=3.8e-13  Score=111.56  Aligned_cols=105  Identities=24%  Similarity=0.309  Sum_probs=98.1

Q ss_pred             CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535            1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ   80 (518)
Q Consensus         1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~   80 (518)
                      +.+..+...|..++..|+|++|+..|.+++...|.++.                  ++.++|.++..+|++++|+..+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~   63 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV------------------LYSNRSAAYAKKGDYQKAYEDGCK   63 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH------------------HHHHHHHHHHhhccHHHHHHHHHH
Confidence            35788999999999999999999999999999998766                  899999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.
T Consensus        64 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  107 (118)
T 1elw_A           64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ  107 (118)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            999999999999999999999999999999999999 6665543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.48  E-value=1.5e-13  Score=152.31  Aligned_cols=120  Identities=17%  Similarity=0.249  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      +++.+.++|+.+.++|+|++|+..|++||+++|+++.                  +|+|+|.++.++|++++|+..+++|
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~------------------a~~nLg~~l~~~g~~~eA~~~~~~A   69 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA------------------AHSNLASVLQQQGKLQEALMHYKEA   69 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5778888999999999999999999999999888766                  7777777777777777777777777


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      ++++|+++.+|+++|.+|..+|++++|+++|++++ +.|+++.....+..++...++.+
T Consensus        70 l~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~  128 (723)
T 4gyw_A           70 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP  128 (723)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            77777777777777777777777777777777777 67766655555555555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.46  E-value=4.5e-13  Score=113.99  Aligned_cols=111  Identities=23%  Similarity=0.452  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ....+...|..++..|+|++|+..|.+++...|.+..                  ++.++|.++..+|++++|+..++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~a   76 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK------------------LYSNRAACYTKLLEFQLALKDCEEC   76 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH------------------HHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4678999999999999999999999999999988765                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG  130 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~  130 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|++++ ..|.++.....+..
T Consensus        77 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  126 (133)
T 2lni_A           77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR  126 (133)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred             HHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            99999999999999999999999999999999999 77766544433333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.44  E-value=1.3e-13  Score=122.23  Aligned_cols=108  Identities=9%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      .|..+..+|++++|+..|.+++...|..+.                  +++++|.+|+++|+|++|++.++++++++|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~------------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~   64 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSI------------------KGFYFAKLYYEAKEYDLAKKYICTYINVQERD   64 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHT------------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            588888999999999999999999888776                  89999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           89 FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        89 ~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      +.+|+.+|.+|..+|++++|+.+|++++ ..|+++.....+..++.+
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK  111 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 888777665555555543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.44  E-value=4.5e-13  Score=126.28  Aligned_cols=120  Identities=11%  Similarity=0.067  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++..+...|..++..|++++|+..|++++..+|+++.                  ++.++|.++.++|++++|+..++++
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~a   65 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE------------------ALYWLARTQLKLGLVNPALENGKTL   65 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhc-----------cChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSL-----------NRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~l-----------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      ++++|+++.+++.+|.++..+           |++++|+..|++++ ..|+++.....+..++...++.+
T Consensus        66 l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~  135 (217)
T 2pl2_A           66 VARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD  135 (217)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999           99999999999999 88877666566666655554444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.43  E-value=1.4e-13  Score=139.13  Aligned_cols=129  Identities=18%  Similarity=0.191  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++.+|+.+++.|+|++|+..|++|+.+.|.+..... ..+...........+|+|+|.+++++|+|++|+.+|+++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQL-YGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTC-CHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhh-cccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999987642000 000001111222348999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      ++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++.....+..+
T Consensus       257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999 888776655554444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=9.5e-13  Score=114.30  Aligned_cols=106  Identities=23%  Similarity=0.355  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|++++...|++..               ...++.++|.++..+|+|++|+..++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~   91 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---------------QAVLHRNRAACHLKLEDYDKAETEASKA   91 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---------------HHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            4678899999999999999999999999999887521               1128999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus        92 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A           92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            99999999999999999999999999999999999 776544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.42  E-value=1.1e-12  Score=128.95  Aligned_cols=104  Identities=20%  Similarity=0.341  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+..+|+.++..|+|++|+..|++++..+|+++.                  +++|+|.++.++|+|++|+.++++|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~a   64 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV------------------YYTNRALCYLKMQQPEQALADCRRA   64 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4678999999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ++++|+++++++++|.+|..+|+|++|+..|++++ ..|+++.
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  107 (281)
T 2c2l_A           65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL  107 (281)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence            99999999999999999999999999999999999 8887653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.42  E-value=1e-12  Score=111.10  Aligned_cols=100  Identities=15%  Similarity=0.293  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|.+++...|.++.                  ++.++|.++..+|++++|+..++++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT------------------YITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH------------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4678899999999999999999999999999988765                  8999999999999999999999999


Q ss_pred             HhcCCCc-------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           82 LKIESSH-------FKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        82 l~l~p~~-------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ++++|.+       +.+++.+|.++..+|++++|+..|++++ ..|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            9999877       9999999999999999999999999999 554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.42  E-value=1.4e-12  Score=110.95  Aligned_cols=104  Identities=15%  Similarity=0.145  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +.+...|..++..|+|++|+..|.+++...|+++.    .           ..+++++|.+++++|+|++|+..++++++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~~~~   67 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY----T-----------PNALYWLGESYYATRNFQLAEAQFRDLVS   67 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT----H-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc----c-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45778999999999999999999999999998762    0           11899999999999999999999999999


Q ss_pred             cCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           84 IESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        84 l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      .+|++   +.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus        68 ~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            99999   8899999999999999999999999999 666543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.41  E-value=2.8e-12  Score=108.20  Aligned_cols=104  Identities=29%  Similarity=0.435  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|.+++...|.++.                  ++.++|.++..+|++++|+..++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~   72 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV------------------YFCNRAAAYSKLGNYAGAVQDCERA   72 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHhhchHHHHHHHHHH
Confidence            4567889999999999999999999999999988765                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  115 (131)
T 2vyi_A           73 ICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET  115 (131)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence            99999999999999999999999999999999999 7765543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.41  E-value=3e-12  Score=113.37  Aligned_cols=105  Identities=19%  Similarity=0.362  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|.+++...|.+..                  ++.++|.++..+|+|++|+..++++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a   73 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSLAYLRTECYGYALGDATRA   73 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999998766                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++++|.++.+++.+|.++..+|++++|+..|++++ ..|.++..
T Consensus        74 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  117 (166)
T 1a17_A           74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA  117 (166)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999999999999999 77765443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.41  E-value=7.1e-13  Score=147.02  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+.++|+.+.+.|++++|+..|++||+++|+++.                  +|+|+|.++..+|++++|++.+++|
T Consensus        42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~------------------a~~nLg~~l~~~g~~~~A~~~~~kA  103 (723)
T 4gyw_A           42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------------------AYSNMGNTLKEMQDVQGALQCYTRA  103 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      ++++|+++.+|+++|.+|..+|++++|+++|++++ +.|+++.....+...+...
T Consensus       104 l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A          104 IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            99999999999999999999999999999999999 8888776655555555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.40  E-value=3e-12  Score=120.61  Aligned_cols=104  Identities=12%  Similarity=0.190  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh-cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQ-SQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++.+...|..++..|+|++|+..|++++.+.| .+..                  +++++|.++..+|+|++|+..++++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~a   68 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSV------------------TAYNCGVCADNIKKYKEAADYFDIA   68 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcH------------------HHHHHHHHHHHhhcHHHHHHHHHHH
Confidence            57899999999999999999999999999998 5544                  8889999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++..
T Consensus        69 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           69 IKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            99999999999999999999999999999999999 78766643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.39  E-value=2.3e-12  Score=121.34  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-----------cC
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-----------RD   70 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-----------g~   70 (518)
                      ++..+...|..++..|++++|+..|+++++++|+++.                  ++.++|.++..+           |+
T Consensus        38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~lg~~~~~~~~~~~~~~~~~g~   99 (217)
T 2pl2_A           38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------------------GYMVLSEAYVALYRQAEDRERGKGY   99 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHhhhhhhhhcccccC
Confidence            4677889999999999999999999999999999877                  999999999999           99


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535           71 FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus        71 ~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      +++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++ .. +++.....+...+...++.++
T Consensus       100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~  169 (217)
T 2pl2_A          100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE  169 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999999 65 555555556666555555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.38  E-value=1.5e-12  Score=106.94  Aligned_cols=102  Identities=10%  Similarity=0.061  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++...|.+..                  ++.++|.++..+|++++|+..+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK------------------YWLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            455678999999999999999999999999998765                  89999999999999999999999999


Q ss_pred             hcCCC--chHHHHHHHHHHHhc-cChHHHHHHHHHHH-hccccC
Q 035535           83 KIESS--HFKALLCKGKILLSL-NRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l~p~--~~ka~~~~g~al~~l-g~~~~A~~~~~~al-~~p~~~  122 (518)
                      +++|.  +..+++.+|.++..+ |++++|+++|++++ ..|+++
T Consensus        68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999  999999999999999 99999999999999 666543

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*

Probab=99.38  E-value=2e-13  Score=133.83  Aligned_cols=60  Identities=33%  Similarity=0.705  Sum_probs=45.0

Q ss_pred             ccccccCCCCCCceEE--ee-C-----CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeec--CCCC
Q 035535          315 LASFINHSCSPNARRV--HV-G-----DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKC--KRCK  381 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~--~~-~-----~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C--~~C~  381 (518)
                      .+.++||||.||+...  +. +     .+|.|+|+|||++|||||++|.+.++..       ...+|.|.|  +.|+
T Consensus       216 ~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~-------~~~~~~C~CGs~~CR  285 (287)
T 3hna_A          216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDI-------KGKLFSCRCGSPKCR  285 (287)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHH-------HTTTCCCCCCCTTCS
T ss_pred             chheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCccccc-------CCCcCEeeCCCCCCC
Confidence            3578899999999753  22 1     2899999999999999999998643221       234788888  6665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.37  E-value=9.3e-13  Score=117.09  Aligned_cols=92  Identities=16%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHH
Q 035535           13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF----------DNALRDCEQAL   82 (518)
Q Consensus        13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~----------~~Al~~~~~al   82 (518)
                      .-+.+.|++|+..|.++++++|+++.                  +|.|+|.++..++++          ++|+..+++||
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~ae------------------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL   73 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDAD------------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   73 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence            34668899999999999999999987                  999999999999876          59999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhcc-----------ChHHHHHHHHHHH-hccccC
Q 035535           83 KIESSHFKALLCKGKILLSLN-----------RYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg-----------~~~~A~~~~~~al-~~p~~~  122 (518)
                      +++|++..+|+++|.+|..+|           +|++|+++|++|+ ++|+++
T Consensus        74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999885           8999999999999 887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.37  E-value=5e-12  Score=114.79  Aligned_cols=116  Identities=7%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535            1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ   80 (518)
Q Consensus         1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~   80 (518)
                      +.+..+.+.|+.++.+|+|++|+..|+++|+++|+++.                  ++.++|.++.++|++++|+..+.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~~~~~~a~~~~~~   64 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE------------------TLLKLGKTYMDIGLPNDAIESLKK   64 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35677889999999999999999999999999999876                  777777777777777777777777


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      ++..+|+++.++..+|.++...++++.|...+.+++ ..|.++.....+...+..
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~  119 (184)
T 3vtx_A           65 FVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS  119 (184)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777 555544443444444433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.36  E-value=1.3e-12  Score=134.38  Aligned_cols=117  Identities=12%  Similarity=0.107  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCEQ   80 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~~   80 (518)
                      .+..+...|..+...|++++|+..|+++|.++|++..                  +|+++|.++..+|+ +++|+.++++
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~------------------a~~~~g~~l~~~g~d~~eAl~~~~~  157 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT------------------VWHFRRVLLKSLQKDLHEEMNYITA  157 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH------------------HHHHHHHHHHHcccCHHHHHHHHHH
Confidence            3567888899999999999999999999999998876                  89999999999996 9999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535           81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK  136 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~  136 (518)
                      |++++|+++.+|+.+|.++..+|++++|+.+|++++ .+|++...+..+..++...+
T Consensus       158 al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g  214 (382)
T 2h6f_A          158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  214 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999 78777666655555555444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.36  E-value=1.7e-12  Score=133.42  Aligned_cols=115  Identities=12%  Similarity=0.108  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHhhhc-HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREE-WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ   80 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~-~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~   80 (518)
                      +...|..+|..+...|+ |++|+..|+++|.++|++..                  +|+++|.++..+|++++|+..+++
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~------------------a~~~~g~~~~~~g~~~eAl~~~~k  191 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ------------------VWHHRRVLVEWLRDPSQELEFIAD  191 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHccCHHHHHHHHHH
Confidence            46789999999999997 99999999999999999877                  999999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      |++++|+++.+|+.+|.++..+|++++|+.+|++++ .+|+++..+..+..++..
T Consensus       192 al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          192 ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 888777666666665554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.34  E-value=9.2e-13  Score=108.87  Aligned_cols=96  Identities=19%  Similarity=0.261  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+...|..++..|+|++|+..|++++.+.|.++.                  ++.|+|.++.++|+|++|+.+++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV------------------GYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5788999999999999999999999999999998876                  8999999999999999999999999


Q ss_pred             HhcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535           82 LKIESSH------FKALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        82 l~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      ++++|++      ..+++++|.++..+|++++|+..|++.
T Consensus        65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            9999999      999999999999999999988776543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.34  E-value=1.1e-11  Score=115.96  Aligned_cols=108  Identities=18%  Similarity=0.251  Sum_probs=91.1

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      .|..++..|+|++|+..|+++++++|+++.                  ++.++|.++..+|++++|+..++++++++|++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVD------------------CLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999877                  99999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhc-----------------------------------cChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           89 FKALLCKGKILLSL-----------------------------------NRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        89 ~ka~~~~g~al~~l-----------------------------------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +.+|+.+|.+|+..                                   |+|++|+.+|++++ ..|+.     .....+
T Consensus       122 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~l  196 (208)
T 3urz_A          122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-----EAQKTL  196 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-----HHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-----HHHHHH
Confidence            99988888776543                                   46788888888888 66532     233444


Q ss_pred             HHHHHHH
Q 035535          133 EKSKKLE  139 (518)
Q Consensus       133 ~~~~~~~  139 (518)
                      .++++++
T Consensus       197 ~~i~~~~  203 (208)
T 3urz_A          197 DKILRIE  203 (208)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.33  E-value=2e-11  Score=110.34  Aligned_cols=119  Identities=13%  Similarity=0.183  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHH-HHhccCH--HHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEA-RSRLRDF--DNALRDC   78 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a-~~~lg~~--~~Al~~~   78 (518)
                      .+..+...|..++..|+|++|+..|.+++.++|.++.                  ++.++|.+ +...|++  ++|+..+
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~l~~~~~~~~~~~A~~~~  104 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE------------------LYAALATVLYYQASQHMTAQTRAMI  104 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH------------------HHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHhcCCcchHHHHHHH
Confidence            3567889999999999999999999999999998866                  89999999 8899999  9999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        79 ~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      +++++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.. ..+...+.+.+++.
T Consensus       105 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~i~~~~~~~  165 (177)
T 2e2e_A          105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR-TQLVESINMAKLLQ  165 (177)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH-HHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH-HHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999 77876543 44444555444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.33  E-value=1.8e-11  Score=102.15  Aligned_cols=104  Identities=16%  Similarity=0.325  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++...|++++|+..+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~   70 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------AWYNLGNAYYKQGDYDEAIEYYQKAL   70 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            567889999999999999999999999999887755                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      +++|.++.+++.+|.++..+|++++|+..|++++ ..|+++..
T Consensus        71 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  113 (125)
T 1na0_A           71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA  113 (125)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence            9999999999999999999999999999999999 77655443

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*

Probab=99.33  E-value=2e-12  Score=128.06  Aligned_cols=67  Identities=34%  Similarity=0.633  Sum_probs=36.4

Q ss_pred             ccccccCCCCCCceEEe-eC-------CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHH-H-hcccCCeEeec--CCCC
Q 035535          315 LASFINHSCSPNARRVH-VG-------DYIIVHASRDVKAGEEITFAYFDMLLPLEKRK-E-MSKTWGFHCKC--KRCK  381 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~-~~-------~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~-~-l~~~~~F~C~C--~~C~  381 (518)
                      .+.++||||.||+.... .+       .++.|+|+|||++|||||++|.+..+...... . .+....|.|.|  +.|+
T Consensus       220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~CGs~~Cr  298 (302)
T 1ml9_A          220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCR  298 (302)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------------
T ss_pred             HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeCCCCcCc
Confidence            46789999999998653 23       27999999999999999999998765432211 1 11234688888  5665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.31  E-value=2e-12  Score=109.13  Aligned_cols=90  Identities=12%  Similarity=0.123  Sum_probs=79.7

Q ss_pred             hhhcHHHHHHHHHHHHHH---hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHH
Q 035535           15 LREEWKESVQVYTQFIDL---CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKA   91 (518)
Q Consensus        15 ~~g~~~~Ai~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka   91 (518)
                      ..|+|++|+..|++++.+   +|.++.                  ++.++|.++..+|+|++|+..++++++++|+++.+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAE------------------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence            468999999999999999   576655                  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           92 LLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        92 ~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++.+|.++..+|++++|+..|++++ ..|+++
T Consensus        64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            9999999999999999999999999 766554

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}

Probab=99.31  E-value=8.6e-12  Score=122.50  Aligned_cols=68  Identities=29%  Similarity=0.570  Sum_probs=49.2

Q ss_pred             ccccccCCCCCCceEEe---eC--CEEEEEEcCCCCCCCeEEeecCCCCCCHHHH--HH-hc-ccCCeEeec--CCCCC
Q 035535          315 LASFINHSCSPNARRVH---VG--DYIIVHASRDVKAGEEITFAYFDMLLPLEKR--KE-MS-KTWGFHCKC--KRCKF  382 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~---~~--~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R--~~-l~-~~~~F~C~C--~~C~~  382 (518)
                      .+.++||||.||+....   ++  .++.|+|+|||++|||||++|.+.++.....  ++ +. ....|.|.|  +.|+.
T Consensus       205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG  283 (290)
T 3bo5_A          205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTA  283 (290)
T ss_dssp             GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCCCCTTCCS
T ss_pred             chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccCCCcCCCc
Confidence            46799999999998753   33  4899999999999999999999876542110  01 11 134688998  57764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.28  E-value=2.7e-12  Score=136.03  Aligned_cols=112  Identities=18%  Similarity=0.322  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+..+|+.+++.|+|++|+..|++|++++|+++.                  ++.++|.++.++|+|++|++++++|
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a   66 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSLAYLRTECYGYALGDATRA   66 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3556677889999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      ++++|+++.+++++|.+|..+|+|++|++.|++++ ..|+++.....+...
T Consensus        67 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999 888777655554443

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A

Probab=99.28  E-value=1.1e-11  Score=122.34  Aligned_cols=45  Identities=33%  Similarity=0.462  Sum_probs=38.0

Q ss_pred             ccccccCCCCCCceEE--eeC------CEEEEEEcCCCCCCCeEEeecCCCCC
Q 035535          315 LASFINHSCSPNARRV--HVG------DYIIVHASRDVKAGEEITFAYFDMLL  359 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~--~~~------~~~~v~A~rdI~~Geeit~sY~~~~~  359 (518)
                      .+.++||||.||+...  +.+      .++.++|+|||++|||||++|.+..+
T Consensus       213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~  265 (299)
T 1mvh_A          213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD  265 (299)
T ss_dssp             GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred             hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCccc
Confidence            4678999999999864  222      38999999999999999999998765

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*

Probab=99.28  E-value=3.8e-12  Score=122.90  Aligned_cols=46  Identities=37%  Similarity=0.370  Sum_probs=38.0

Q ss_pred             ccccccCCCCCCceEEe-e----CCEEEEEEcCCCCCCCeEEeecCCCCCC
Q 035535          315 LASFINHSCSPNARRVH-V----GDYIIVHASRDVKAGEEITFAYFDMLLP  360 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~-~----~~~~~v~A~rdI~~Geeit~sY~~~~~~  360 (518)
                      .++++||||.|||...+ .    +..+.|+|+|||++|||||++|.....+
T Consensus       186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~~~  236 (261)
T 2f69_A          186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSP  236 (261)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSCC
T ss_pred             ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCcccc
Confidence            35789999999998775 2    2245999999999999999999976653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.27  E-value=4.9e-11  Score=108.15  Aligned_cols=121  Identities=11%  Similarity=0.103  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++..+...|..++..|++++|+..+.+++...|....                  ++.++|.++...++++.|+..+.++
T Consensus        38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~a   99 (184)
T 3vtx_A           38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE------------------AYYILGSANFMIDEKQAAIDALQRA   99 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567888999999999999999999999999888765                  7778888888888888888888888


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      ++++|.+..+++.+|.++..+|+|++|++.|++++ ..|.++.....+...+...++.++
T Consensus       100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A          100 IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            88888888888888888888888888888888888 677666555556666555554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.27  E-value=3.2e-11  Score=113.52  Aligned_cols=114  Identities=11%  Similarity=0.090  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|+|++|+..|.+++..+|.+..                  ++.++|.++..+|++++|+..+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~al  103 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN------------------AYIGKSAAYRDMKNNQEYIATLTEGI  103 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH------------------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            345677999999999999999999999999998776                  99999999999999999999999999


Q ss_pred             hcCCCch-------HHHHHHHHHHHhccChHHHHHHHHHHH-hccc--cCCcHHHHHHHHHH
Q 035535           83 KIESSHF-------KALLCKGKILLSLNRYSMALDCFKETL-VDAQ--ASGSLETVNGFLEK  134 (518)
Q Consensus        83 ~l~p~~~-------ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~--~~~~~~~l~~~l~~  134 (518)
                      +++|+++       .+|+.+|.++..+|++++|+..|++++ ..|+  ++.....+......
T Consensus       104 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A          104 KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            9999998       779999999999999999999999999 7776  55554445444433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.26  E-value=4.7e-12  Score=112.71  Aligned_cols=108  Identities=6%  Similarity=-0.075  Sum_probs=95.2

Q ss_pred             hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      .+++-.+-..|.+++.++|+++.                  +++++|.+++++|+|++|+..++++++++|+++.+|+.+
T Consensus        15 l~~~~~~~~~l~~al~l~p~~~~------------------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l   76 (151)
T 3gyz_A           15 VIDAINSGATLKDINAIPDDMMD------------------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL   76 (151)
T ss_dssp             HHHHHHTSCCTGGGCCSCHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHCCCCHHHHhCCCHHHHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34444555667888888888876                  999999999999999999999999999999999999999


Q ss_pred             HHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           96 GKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        96 g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      |.+|..+|+|++|+.+|++++ .+|+++.....+...+...++.++.
T Consensus        77 g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA  123 (151)
T 3gyz_A           77 AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA  123 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999 8999888888888888777766544

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}

Probab=99.23  E-value=2.9e-11  Score=119.17  Aligned_cols=67  Identities=31%  Similarity=0.548  Sum_probs=46.1

Q ss_pred             ccccccCCCCCCceEE--eeC------CEEEEEEcCCCCCCCeEEeecCCCCCCHHHH-----HHhcccCCeEeec--CC
Q 035535          315 LASFINHSCSPNARRV--HVG------DYIIVHASRDVKAGEEITFAYFDMLLPLEKR-----KEMSKTWGFHCKC--KR  379 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~--~~~------~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R-----~~l~~~~~F~C~C--~~  379 (518)
                      .++++||||.||+...  +.+      .++.++|+|||++|||||++|........+.     ..-.+...|.|.|  +.
T Consensus       215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~d~~~~~~~~~~~C~CGs~~  294 (300)
T 2r3a_A          215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVT  294 (300)
T ss_dssp             GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGSSCC--------------CCCCBCCCCCTT
T ss_pred             hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCCccccccccccccccccccCCCEeeCCCcc
Confidence            4689999999999864  221      3899999999999999999998764221110     0011234688888  56


Q ss_pred             CC
Q 035535          380 CK  381 (518)
Q Consensus       380 C~  381 (518)
                      |+
T Consensus       295 Cr  296 (300)
T 2r3a_A          295 CR  296 (300)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.23  E-value=8e-11  Score=109.18  Aligned_cols=96  Identities=14%  Similarity=0.216  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|..++..|+|++|+..|++++  .| ++.                  ++.++|.++..+|++++|+..+++++++
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~   66 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSR------------------ICFNIGCMYTILKNMTEAEKAFTRSINR   66 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44556666666666666666666664  11 111                  5666666666666666666666666666


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      +|+++.+++.+|.++..+|+|++|+..|++++ ..|.+
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence            66666666666666666666666666666666 44443

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A

Probab=99.21  E-value=2.3e-11  Score=120.30  Aligned_cols=44  Identities=32%  Similarity=0.248  Sum_probs=36.7

Q ss_pred             ccccccCCCCCCceEEee-C---CE-EEEEEcCCCCCCCeEEeecCCCC
Q 035535          315 LASFINHSCSPNARRVHV-G---DY-IIVHASRDVKAGEEITFAYFDML  358 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~~-~---~~-~~v~A~rdI~~Geeit~sY~~~~  358 (518)
                      .++++||||.|||...+. .   .+ +.|+|+|||++|||||++|....
T Consensus       240 ~ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~~  288 (293)
T 1h3i_A          240 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH  288 (293)
T ss_dssp             CGGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred             ceeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCCC
Confidence            367899999999998763 2   23 58999999999999999998654

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}

Probab=99.21  E-value=6e-11  Score=125.39  Aligned_cols=69  Identities=23%  Similarity=0.159  Sum_probs=56.1

Q ss_pred             cceeEeecccccccCCCCCCc-eEEeeCCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCC
Q 035535          307 LYGLGLWALASFINHSCSPNA-RRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRC  380 (518)
Q Consensus       307 ~~~~gl~~~~s~~NHsC~PN~-~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C  380 (518)
                      ....+|+|.+.++||||.||. .+.+.++.+.++|.++|++||||+|||++.  +   -.+|+..|||.|....+
T Consensus       264 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~--~---n~~Ll~~YGFv~~~Np~  333 (497)
T 3smt_A          264 RVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTR--S---NAEFVIHSGFFFDNNSH  333 (497)
T ss_dssp             SEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSC--C---HHHHHHHHSCCCTTCTT
T ss_pred             cccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCC--C---hHHHHHHCCCCCCCCCC
Confidence            346799999999999999964 444456799999999999999999999984  2   13577899999876444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.20  E-value=1.1e-10  Score=112.51  Aligned_cols=111  Identities=11%  Similarity=0.039  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+..+|..+++.|+|++|+..|++++...|.++.               ...+++++|.+++++|+|++|+..++++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~   78 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW---------------AADAQFYLARAYYQNKEYLLAASEYERF   78 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc---------------hHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4678899999999999999999999999999988732               0118999999999999999999999999


Q ss_pred             HhcCCC---chHHHHHHHHHHHh--------ccChHHHHHHHHHHH-hccccCCcHHH
Q 035535           82 LKIESS---HFKALLCKGKILLS--------LNRYSMALDCFKETL-VDAQASGSLET  127 (518)
Q Consensus        82 l~l~p~---~~ka~~~~g~al~~--------lg~~~~A~~~~~~al-~~p~~~~~~~~  127 (518)
                      ++++|+   .+.+++.+|.++..        +|++++|+..|++++ ..|+++.....
T Consensus        79 l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  136 (261)
T 3qky_A           79 IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA  136 (261)
T ss_dssp             HHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence            999885   46799999999999        999999999999999 78877655433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.20  E-value=1.8e-10  Score=97.06  Aligned_cols=101  Identities=17%  Similarity=0.329  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +.+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++...|++++|+..++++++
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~   63 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------------------AWYNLGNAYYKQGDYDEAIEYYQKALE   63 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh------------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999887655                  889999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      .+|.+..+++.+|.++...|++++|+..|++++ ..|.++
T Consensus        64 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999999999999 666543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.19  E-value=1.2e-10  Score=107.91  Aligned_cols=89  Identities=13%  Similarity=0.084  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++.++|.++.                  +++++|.++..+|+|++|+..+++++
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~~al   98 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV------------------AYFQRGMLYYQTEKYDLAIKDLKEAL   98 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH------------------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            457889999999999999999999999999998766                  99999999999999999999999999


Q ss_pred             hcCCCch----------------HHHHHHHHHHHhccChHHHH
Q 035535           83 KIESSHF----------------KALLCKGKILLSLNRYSMAL  109 (518)
Q Consensus        83 ~l~p~~~----------------ka~~~~g~al~~lg~~~~A~  109 (518)
                      ++.|.+.                .+++.+|.++..+|++++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  141 (213)
T 1hh8_A           99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  141 (213)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence            9888766                99999999999999999886

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.18  E-value=9.8e-11  Score=123.78  Aligned_cols=120  Identities=18%  Similarity=0.094  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhh---------hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc------
Q 035535            4 QQLRSKATELLLR---------EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL------   68 (518)
Q Consensus         4 ~~l~~~Gn~~~~~---------g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l------   68 (518)
                      ..+...|..++..         |+|++|+..|++|++++|+++.                  +|+++|.++..+      
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~~~~~~~  232 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR------------------SWYILGNAYLSLYFNTGQ  232 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHHHHhhcc
Confidence            5678899999999         9999999999999999999876                  999999999999      


Q ss_pred             --cCHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535           69 --RDFDNALRDCEQALKIES---SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus        69 --g~~~~Al~~~~~al~l~p---~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                        |++++|+..+++|++++|   +++.+|+.+|.+|..+|+|++|++.|++++ ..|+++.....+..++...++.++.
T Consensus       233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence              999999999999999999   999999999999999999999999999999 8888777667777777777766544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.6e-10  Score=109.44  Aligned_cols=98  Identities=24%  Similarity=0.497  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|++++...|.++.                  ++.++|.++..+|++++|+..+++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR------------------GYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            456778888999999999999999999998888765                  88899999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VD  118 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~  118 (518)
                      +++|+++.+++.+|.++..+|++++|+..|++++ ..
T Consensus       201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999998 55

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.18  E-value=3.1e-10  Score=101.49  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++...|++++|+..+++++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~  103 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK------------------VATVLGLTYVQVQKYDLAVPLLIKVA  103 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344566667777777777777777777776665544                  67777777777777777777777777


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +.+|.++.+++.+|.++..+|++++|+..|++++ ..|.++
T Consensus       104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  144 (186)
T 3as5_A          104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG  144 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence            7777777777777777777777777777777777 555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.17  E-value=2.1e-10  Score=95.99  Aligned_cols=100  Identities=14%  Similarity=0.126  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 035535           20 KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKIL   99 (518)
Q Consensus        20 ~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al   99 (518)
                      ++|+..|.+++..+|+++.                  +++++|.++..+|++++|+..++++++++|+++.+|+.+|.++
T Consensus         2 ~~a~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   63 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNML------------------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL   63 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            3589999999999998876                  9999999999999999999999999999999999999999999


Q ss_pred             HhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535          100 LSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus       100 ~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      ..+|++++|+..|++++ ..|.+... .....+...++++
T Consensus        64 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~l~~~l~~l  102 (115)
T 2kat_A           64 QGQGDRAGARQAWESGLAAAQSRGDQ-QVVKELQVFLRRL  102 (115)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhccccccH-HHHHHHHHHHHHh
Confidence            99999999999999999 67654432 3333333333333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.17  E-value=5.1e-11  Score=131.77  Aligned_cols=119  Identities=8%  Similarity=-0.015  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.+..+|..++..|+|++|+..|+++++.+|++..                  +|+++|.+++.+|+|++|+.++++|+
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~al  494 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR------------------LVWYRAVAELLTGDYDSATKHFTEVL  494 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            467889999999999999999999999999999877                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      +++|+++.+|+.+|.++..+|+|++ ++.|++++ .+|+++.....+...+...++.++
T Consensus       495 ~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~  552 (681)
T 2pzi_A          495 DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG  552 (681)
T ss_dssp             HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999 99999999 888777666666666665555543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.16  E-value=1.5e-10  Score=124.77  Aligned_cols=116  Identities=11%  Similarity=-0.017  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|+++++++|++..                  ++.++|.++..+|++++|++.++++
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a   83 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE------------------AVARLGRVRWTQQRHAEAAVLLQQA   83 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      ++++|+++.+++.+|.+|..+|++++|++.|++++ ..|+++.....+...+...
T Consensus        84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           84 SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999 7777665555555555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=4.1e-10  Score=106.28  Aligned_cols=109  Identities=9%  Similarity=0.088  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+..+|..++..|+|++|+..|++++...|.++.    .           ..+++++|.+++++|+|++|+..++++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~~   67 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY----S-----------QQVQLDLIYAYYKNADLPLAQAAIDRF   67 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT----H-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH----H-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3577899999999999999999999999999887643    0           118999999999999999999999999


Q ss_pred             HhcCCCchH---HHHHHHHHHHh------------------ccChHHHHHHHHHHH-hccccCCcH
Q 035535           82 LKIESSHFK---ALLCKGKILLS------------------LNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        82 l~l~p~~~k---a~~~~g~al~~------------------lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      ++.+|+++.   +++.+|.++..                  .|++++|+..|++++ ..|+++...
T Consensus        68 l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           68 IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             HHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             HHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            999999875   89999999986                  579999999999999 788776543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.16  E-value=2.4e-10  Score=115.16  Aligned_cols=101  Identities=12%  Similarity=0.191  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..+...|++++|+..|++++...|.++.                  ++.++|.++..+|++++|+..+++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS------------------LWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            556778888888999999999999999988888765                  88999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      +++|+++.+++.+|.+|..+|++++|+..|++++ ..|++
T Consensus       275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999 66653

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*

Probab=99.15  E-value=6.6e-11  Score=104.33  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=40.9

Q ss_pred             cccccCCCCC---CceEEeeCCEEEEEEcCCCCCCCeEEeecCCCCCC
Q 035535          316 ASFINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLP  360 (518)
Q Consensus       316 ~s~~NHsC~P---N~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~~  360 (518)
                      +.++||||.|   ||.....++++.++|+|||++|||||+.|.+...+
T Consensus       100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~~~~  147 (149)
T 2qpw_A          100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNP  147 (149)
T ss_dssp             GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred             eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCccCC
Confidence            6899999999   99987778899999999999999999999886554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.15  E-value=2.3e-10  Score=109.76  Aligned_cols=103  Identities=15%  Similarity=0.067  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|.+++...|.++.                  ++.++|.++..+|++++|+..++++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~a  103 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE------------------VFNYLGIYLTQAGNFDAAYEAFDSV  103 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3567889999999999999999999999999998766                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus       104 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          104 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999999999999999 776554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.14  E-value=3.1e-10  Score=112.72  Aligned_cols=100  Identities=19%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      +++.+...|..++..|+|++|+..|++++..+|.++.                  ++.++|.++..+|++++|+..++++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~   63 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI------------------AYYRRATVFLAMGKSKAALPDLTKV   63 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5788999999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ++++|++..+++.+|.++..+|++++|+..|++++ ..|
T Consensus        64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999 676

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.14  E-value=9.8e-11  Score=100.48  Aligned_cols=85  Identities=15%  Similarity=0.170  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      ++.|+|.++++.|+|++|+..+++|++++|.++.+|+.+|.+|..+|++++|+.+|++++ .+|+++.....+...+...
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            899999999999999999999999999999999999999999999999999999999999 8887776666666666666


Q ss_pred             HHHHHH
Q 035535          136 KKLEYQ  141 (518)
Q Consensus       136 ~~~~~~  141 (518)
                      ++.++.
T Consensus        95 ~~~~~A  100 (126)
T 4gco_A           95 REWSKA  100 (126)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.14  E-value=4.3e-10  Score=106.44  Aligned_cols=137  Identities=10%  Similarity=0.071  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh-hhhH-------HHHHHHHHHHHHHHHHHHHHHhccCHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK-QEAS-------QLSKLKKSLCLALSNRAEARSRLRDFDNA   74 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~-~~~~-------~~~~~~~~l~~~~~nra~a~~~lg~~~~A   74 (518)
                      +..+...|..++..|++++|+..|.+++.+.|....... ...+       ...........++.++|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            567889999999999999999999999997654210000 0000       00000111234899999999999999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           75 LRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        75 l~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      +..++++++++|.++.+++.+|.++..+|++++|+..|++++ ..|+++.....+...+...++.+
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999999999999999999999999999999 77766655555555555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.13  E-value=1.8e-10  Score=116.09  Aligned_cols=105  Identities=10%  Similarity=0.041  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+..+|..+++.|+|++|+..|++++..+|.++.                  ++.++|.++..+|++++|+..+++++
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al  126 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE------------------AWQFLGITQAENENEQAAIVALQRCL  126 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345889999999999999999999999999998876                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      +++|+++.+++.+|.+|..+|++++|+..|++++ ..|+++...
T Consensus       127 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  170 (365)
T 4eqf_A          127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV  170 (365)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred             hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence            9999999999999999999999999999999999 777766543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.13  E-value=2.3e-10  Score=112.53  Aligned_cols=116  Identities=15%  Similarity=0.057  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH----
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD----   77 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~----   77 (518)
                      ..+.+...|..++..|++++|+..|++++..+|+++.                  +++++|.++..+|++++|+..    
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE------------------IGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH------------------HHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh------------------HHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            4567889999999999999999999999999999876                  888888888888888776544    


Q ss_pred             ------------------------------HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc--CCc
Q 035535           78 ------------------------------CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA--SGS  124 (518)
Q Consensus        78 ------------------------------~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~--~~~  124 (518)
                                                    ++++++.+|+++.+++.+|.+|...|++++|+..|++++ ..|++  +..
T Consensus       178 ~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          178 PLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             CGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             chhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence                                          555567788888889999999999999999999999988 77766  333


Q ss_pred             HHHHHHHHHHH
Q 035535          125 LETVNGFLEKS  135 (518)
Q Consensus       125 ~~~l~~~l~~~  135 (518)
                      ...+..++...
T Consensus       258 ~~~l~~~~~~~  268 (287)
T 3qou_A          258 RXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            44444444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.13  E-value=1.9e-10  Score=121.59  Aligned_cols=115  Identities=16%  Similarity=0.063  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHhhhcH-HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEW-KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ   80 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~-~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~   80 (518)
                      .+..+..+|..++..|+| ++|+..|+++++++|+++.                  +|.++|.+|.++|++++|+..+++
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE------------------AWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            467788999999999999 9999999999999999876                  999999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhc---------cChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           81 ALKIESSHFKALLCKGKILLSL---------NRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~l---------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      +++++|+ ..+++.+|.++..+         |++++|++.|++++ ..|+++.....+...+...
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999 69999999999999         99999999999999 8887776666666666554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.13  E-value=4.3e-10  Score=117.99  Aligned_cols=101  Identities=14%  Similarity=0.198  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+..+|+.+++.|+|++|+..|++++..+|+ +.                  ++.++|.+++++|++++|+..++++
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~------------------~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PV------------------FYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-HH------------------HHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            5788999999999999999999999999999984 33                  8999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|++++ ..|.+
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999 55533

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.13  E-value=3.3e-10  Score=113.69  Aligned_cols=101  Identities=13%  Similarity=0.169  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|++++...|.++.                  ++.++|.++..+|++++|+..+++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al  278 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL------------------LWNKLGATLANGNQSEEAVAAYRRAL  278 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456778899999999999999999999999888765                  88999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      +++|+++.+++.+|.++..+|++++|+..|++++ ..|++
T Consensus       279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999 76655

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.12  E-value=2.9e-10  Score=109.22  Aligned_cols=118  Identities=15%  Similarity=0.191  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      .+.+...|..++..|+|++|+..|++++..+|.++.                  ++.++|.++..+|+|++|+..+++++
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a~   64 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY------------------IYNRRAVCYYELAKYDLAQKDIETYF   64 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST------------------THHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            456788999999999999999999999999999877                  89999999999999999999999999


Q ss_pred             hcCCCc----hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           83 KIESSH----FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        83 ~l~p~~----~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      + .|.+    ..+|+.+|.++..+|++++|+..|++++ ..|.++.....+...+...++.+
T Consensus        65 ~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  125 (272)
T 3u4t_A           65 S-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP  125 (272)
T ss_dssp             T-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred             h-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence            9 4433    4569999999999999999999999999 77776655555555555444443

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*

Probab=99.12  E-value=6.6e-11  Score=123.81  Aligned_cols=64  Identities=20%  Similarity=0.237  Sum_probs=57.3

Q ss_pred             ceeEeecccccccCCCCCCceEEeeCCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEee
Q 035535          308 YGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCK  376 (518)
Q Consensus       308 ~~~gl~~~~s~~NHsC~PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~  376 (518)
                      .+.+|+|.+.++||||.|||.+.++++.+.++|.|+|++||||++||++.  +   ..+|+..|||.+.
T Consensus       215 ~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~~--~---n~~ll~~YGF~~~  278 (449)
T 3qxy_A          215 NSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM--A---NWQLIHMYGFVEP  278 (449)
T ss_dssp             CCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSSC--C---HHHHHHHHSCCCC
T ss_pred             CceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCCC--C---HHHHHHhCCCCCC
Confidence            46799999999999999999999999999999999999999999999983  2   2357789999985

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.12  E-value=7.2e-10  Score=110.06  Aligned_cols=112  Identities=16%  Similarity=0.192  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .....|..++..|++++|+..|++++...|.++.              ....++.++|.++.++|++++|+..+++++++
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAE--------------YTVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH--------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3456799999999999999999999999988643              12237889999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG  130 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~  130 (518)
                      +|+++.+++.+|.++..+|++++|+..|++++ ..|+++.....+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  348 (359)
T 3ieg_A          302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK  348 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            99999999999999999999999999999999 77765544333333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.12  E-value=7.7e-11  Score=104.10  Aligned_cols=102  Identities=10%  Similarity=0.100  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 035535           22 SVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLS  101 (518)
Q Consensus        22 Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~  101 (518)
                      +-..|++++.++|.+..                  +++++|.+++..|+|++|+..+++++.++|+++.+|+.+|.++..
T Consensus         6 ~~~~~~~al~~~p~~~~------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   67 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLE------------------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA   67 (148)
T ss_dssp             CCCSHHHHTTCCHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHH------------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence            34568889999888766                  899999999999999999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535          102 LNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ  141 (518)
Q Consensus       102 lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~  141 (518)
                      +|+|++|+.+|++++ ..|+++.....+...+...++.++.
T Consensus        68 ~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A  108 (148)
T 2vgx_A           68 MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA  108 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence            999999999999999 8898887776677666666555433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.12  E-value=5.5e-11  Score=131.50  Aligned_cols=111  Identities=10%  Similarity=0.047  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++..+..+|..++..|+|++|+..|++|++++|+++.                  +++|+|.++.++|+|++ +..+++|
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------------------~~~~lg~~~~~~g~~~~-~~~~~~a  526 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA------------------PKLALAATAELAGNTDE-HKFYQTV  526 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH------------------HHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------------HHHHHHHHHHHcCChHH-HHHHHHH
Confidence            4678899999999999999999999999999999987                  99999999999999999 9999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      ++++|+++.+|+.+|.++..+|++++|+++|++++ ..|+++.....+...
T Consensus       527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999 777665544444433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.11  E-value=2.7e-10  Score=103.11  Aligned_cols=100  Identities=23%  Similarity=0.207  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH------
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD------   77 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~------   77 (518)
                      +.+...|..++..|++++|+..|++++..+|+++.                  ++.++|.++..+|++++|+..      
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~la~~~~~~g~~~~A~~~~~~a~~   68 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD------------------VKLAKADCLLETKQFELAQELLATIPL   68 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH------------------HHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence            45677888899999999999999999998888766                  777777777777777666554      


Q ss_pred             ----------------------------HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           78 ----------------------------CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        78 ----------------------------~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                                                  ++++++++|+++.+++.+|.++..+|++++|+..|++++ ..|+.
T Consensus        69 ~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           69 EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence                                        444555677778888888888888888888888888888 66654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.10  E-value=3.5e-10  Score=101.09  Aligned_cols=112  Identities=13%  Similarity=0.084  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|++++...|.+..                  ++.++|.++...|++++|+..+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~~~   69 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD------------------VALHLGIAYVKTGAVDRGTELLERSL   69 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            566788999999999999999999999999887755                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +.+|.+..+++.+|.++...|++++|++.|++++ ..|.++.....+...+
T Consensus        70 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  120 (186)
T 3as5_A           70 ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL  120 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 6665543333333333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.10  E-value=9.2e-10  Score=92.59  Aligned_cols=99  Identities=17%  Similarity=0.321  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|....                  ++.++|.++...|++++|+..+++++
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~~~   96 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------------------AWYNLGNAYYKQGDYDEAIEYYQKAL   96 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH------------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            455777899999999999999999999999887655                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      +.+|.+..+++.+|.++...|++++|...|++++ ..|
T Consensus        97 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           97 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999 555

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.10  E-value=7.9e-10  Score=103.93  Aligned_cols=101  Identities=17%  Similarity=0.181  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|....                  ++.++|.++..+|++++|+..+++++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~  118 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAAT------------------AYYGAGNVYVVKEMYKEAKDMFEKAL  118 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH------------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            345556666666667777777777777666665544                  66667777777777777777777777


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      +++|.+..+++.+|.++..+|++++|+..|++++ ..|++
T Consensus       119 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND  158 (243)
T ss_dssp             HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            7777667777777777777777777777777766 44433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.09  E-value=6.2e-10  Score=104.63  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++..+|++++|+..+++++
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD------------------LFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH------------------HHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            456788999999999999999999999999988765                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +++|+++.+++.+|.++...|++++|+..|++++ ..|+++.....+...+
T Consensus       153 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 6665544333333333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.08  E-value=1.4e-09  Score=104.61  Aligned_cols=121  Identities=14%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Q 035535            3 MQQLRSKATELLL--------REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNA   74 (518)
Q Consensus         3 a~~l~~~Gn~~~~--------~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~A   74 (518)
                      ...+...|..++.        .|++++|+..|++++...|++...... ...+......+...++++|.++.++|+|++|
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA-TQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence            4567889999999        999999999999999999987541100 0111112222334569999999999999999


Q ss_pred             HHHHHHHHhcCCC---chHHHHHHHHHHHhc----------cChHHHHHHHHHHH-hccccCCc
Q 035535           75 LRDCEQALKIESS---HFKALLCKGKILLSL----------NRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        75 l~~~~~al~l~p~---~~ka~~~~g~al~~l----------g~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      +..++++++.+|+   .+.+++.+|.+|..+          |++++|+..|++++ ..|+++..
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            9999999999998   578999999999988          99999999999999 78766543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.08  E-value=8e-10  Score=87.45  Aligned_cols=83  Identities=16%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++...|.+..                  ++.++|.++.++|++++|+..+++++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------AWYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            456667777777777777777777777777776654                  67777777777777777777777777


Q ss_pred             hcCCCchHHHHHHHHHHHhcc
Q 035535           83 KIESSHFKALLCKGKILLSLN  103 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg  103 (518)
                      +++|+++.+++.+|.++..+|
T Consensus        71 ~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           71 ELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHC
T ss_pred             hcCCCCHHHHHHHHHHHHhcC
Confidence            777777777777777776553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.08  E-value=1.3e-09  Score=107.09  Aligned_cols=100  Identities=11%  Similarity=0.129  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|.++.                  ++.++|.++...|++++|+..+++++
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ------------------LWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456778899999999999999999999999888765                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      +++|+++.+++.+|.++..+|++++|++.|++++ ..|.
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999 7766

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.08  E-value=1.2e-09  Score=103.70  Aligned_cols=97  Identities=16%  Similarity=0.080  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|.+++...|....                  ++.++|.++...|++++|+..+++++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~a~   98 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD------------------AHAALAVVFQTEMEPKLADEEYRKAL   98 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456677777777777777777777777777766554                  67777777777777777777777777


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                      +++|.+..+++.+|.++...|++++|++.|++++.
T Consensus        99 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=6.4e-10  Score=113.12  Aligned_cols=101  Identities=15%  Similarity=0.152  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..+...|++++|+..|.+++...|++..                  ++.++|.++...|++++|+..++++++
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~  197 (388)
T 1w3b_A          136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV------------------AWSNLGCVFNAQGEIWLAIHHFEKAVT  197 (388)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34556666677777777777777777776666544                  566666666666666666666666666


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++|++..+++.+|.++...|++++|+..|++++ ..|+++
T Consensus       198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  237 (388)
T 1w3b_A          198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA  237 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence            666666666666666666666666666666665 454443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=5.5e-10  Score=113.63  Aligned_cols=117  Identities=16%  Similarity=0.114  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|+++++..|.++.                  ++.++|.++.+.|++++|+..+++++
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al  298 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD------------------AYCNLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH------------------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456778899999999999999999999999888766                  88889999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK  137 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~  137 (518)
                      +++|+++.+++.+|.++...|++++|+..|++++ ..|+++.....+...+.+.++
T Consensus       299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  354 (388)
T 1w3b_A          299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred             hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999988 667655555555555544443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.07  E-value=1.7e-09  Score=100.10  Aligned_cols=103  Identities=19%  Similarity=0.160  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++..+|++++|+..++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a   68 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL------------------AWLVRAEIYQYLKVNDKAQESFRQA   68 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH------------------HHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3567788899999999999999999999998887765                  7888888888888888888888888


Q ss_pred             HhcCCCchHHHHHHHHHHHhc-cChHHHHHHHHHHHhccccC
Q 035535           82 LKIESSHFKALLCKGKILLSL-NRYSMALDCFKETLVDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~l-g~~~~A~~~~~~al~~p~~~  122 (518)
                      ++++|.+..+++.+|.++... |++++|+..|++++..|.++
T Consensus        69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (225)
T 2vq2_A           69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP  110 (225)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred             HHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence            888888888888888888888 88888888888888643344

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.04  E-value=2.3e-09  Score=99.19  Aligned_cols=116  Identities=11%  Similarity=0.037  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-RDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-g~~~~Al~~~~~a   81 (518)
                      ...+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++... |++++|+..++++
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE------------------INNNYGWFLCGRLNRPAESMAYFDKA  103 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH------------------HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            456788999999999999999999999999988765                  899999999999 9999999999999


Q ss_pred             Hh--cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535           82 LK--IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK  136 (518)
Q Consensus        82 l~--l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~  136 (518)
                      ++  .+|.+..+++.+|.++...|++++|+..|++++ ..|.++.....+...+...+
T Consensus       104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A          104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence            99  778889999999999999999999999999999 77665444444444444333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.03  E-value=1.4e-09  Score=104.40  Aligned_cols=110  Identities=5%  Similarity=0.063  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..++..|+|++|+..|.+++. .|.++.              ....++.++|.++..+|++++|+..++++++
T Consensus        38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~  102 (272)
T 3u4t_A           38 YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK--------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVD  102 (272)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT--------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh--------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            4566778888888888888888888887 444332              0112578888888888888888888888888


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV  128 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l  128 (518)
                      ++|.++.+++.+|.++..+|++++|+..|++++ ..|.++.....+
T Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  148 (272)
T 3u4t_A          103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL  148 (272)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence            888888888888888888888888888888888 655554433333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.02  E-value=1.8e-09  Score=102.52  Aligned_cols=112  Identities=13%  Similarity=0.128  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++..+|++++|+..+++++
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~~~  132 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR------------------VLNNYGGFLYEQKRYEEAYQRLLEAS  132 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH------------------HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            456777888888888888888888888888877654                  66666666666666666666666666


Q ss_pred             h--cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           83 K--IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        83 ~--l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      +  .+|.+..+++.+|.++...|++++|+..|++++ ..|.++.....+...+
T Consensus       133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            6  666666666666666666666666666666666 5554433333333333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.02  E-value=2.4e-09  Score=110.64  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..+++.|+|++|+..|++++...|.++.                  ++.++|.++..+|++++|+..++++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI------------------AYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4678899999999999999999999999999998766                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++++|+++.+++.+|.+|..+|++++|+..|++++ ..|+++
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999999999 666544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.02  E-value=2.4e-09  Score=91.75  Aligned_cols=84  Identities=11%  Similarity=0.264  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           55 CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      +.++.|+|.++++.|+|++|+..+++|++++|+++.+|+.+|.+|..+|+|++|+++|++++ ..|+++.....+...+.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            44899999999999999999999999999999999999999999999999999999999999 88888777666655555


Q ss_pred             HHHHH
Q 035535          134 KSKKL  138 (518)
Q Consensus       134 ~~~~~  138 (518)
                      .+...
T Consensus        88 ~lg~~   92 (127)
T 4gcn_A           88 RAGNA   92 (127)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.02  E-value=2.1e-09  Score=105.70  Aligned_cols=110  Identities=12%  Similarity=0.015  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLR-EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~-g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      +..+.+.|..+... |++++|+..|++|+.+.|.....            .....++.++|.++.++|+|++|+..++++
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  184 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV------------ALSNKCFIKCADLKALDGQYIEASDIYSKL  184 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45678899999996 99999999999999999865320            011237999999999999999999999999


Q ss_pred             HhcCCCchH-------HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           82 LKIESSHFK-------ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        82 l~l~p~~~k-------a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++++|++..       +++++|.++..+|++++|+.+|++++ .+|+.+..
T Consensus       185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            999987643       68999999999999999999999999 78766543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.02  E-value=3.3e-09  Score=104.23  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLRE-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ...+...|..++..| ++++|+..|.+++..+|.++.                  ++.++|.++..+|++++|+..++++
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a  151 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP------------------AWIAYGHSFAVESEHDQAMAAYFTA  151 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            345566666666666 666666666666666666554                  5666666666666666666666666


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++++|++..+++.+|.++...|++++|+..|++++ ..|.++
T Consensus       152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  193 (330)
T 3hym_B          152 AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP  193 (330)
T ss_dssp             HHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence            66666666666666666666666666666666666 445443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.01  E-value=3.1e-09  Score=109.76  Aligned_cols=110  Identities=16%  Similarity=0.197  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|..++..|++++|+..|++++...|.++.              ....++.++|.++.++|++++|+..+++++++
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  324 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAE--------------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQM  324 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH--------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3455699999999999999999999999888542              11238999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV  128 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l  128 (518)
                      +|+++.+|+.+|.++..+|++++|+..|++++ ..|+++.....+
T Consensus       325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  369 (450)
T 2y4t_A          325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL  369 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            99999999999999999999999999999999 777655443333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.01  E-value=6.5e-10  Score=117.59  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.+..+|+.+++.|+|++|+..|++++..+|+++.                  ++.++|.++.++|++++|+..++++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~a   85 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV------------------FYSNISACYISTGDLEKVIEFTTKA   85 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|+ ++ ..|+..
T Consensus        86 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~  126 (537)
T 3fp2_A           86 LEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD  126 (537)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC------
T ss_pred             HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence            99999999999999999999999999999996 66 666544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.01  E-value=5.1e-10  Score=97.60  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=83.9

Q ss_pred             HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc
Q 035535           24 QVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN  103 (518)
Q Consensus        24 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg  103 (518)
                      ..|.+++.++|++..                  +++++|.++++.|+|++|+..+++++.++|+++.+|+.+|.++..+|
T Consensus         5 ~~l~~al~~~p~~~~------------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   66 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLE------------------QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG   66 (142)
T ss_dssp             ----CCTTCCHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHcCCHHHHH------------------HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh
Confidence            456777777777665                  89999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535          104 RYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY  140 (518)
Q Consensus       104 ~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~  140 (518)
                      +|++|+.+|++++ ..|+++.....+...+...++.++
T Consensus        67 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  104 (142)
T 2xcb_A           67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDG  104 (142)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHH
Confidence            9999999999999 888888776666666666555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.01  E-value=1.7e-09  Score=106.23  Aligned_cols=117  Identities=11%  Similarity=-0.000  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQAL   82 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al   82 (518)
                      ..+...+..++..|++++|+..|.+++...|.++.                  ++.++|.++...| ++++|+..+++++
T Consensus        57 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~~A~~~~~~a~  118 (330)
T 3hym_B           57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV------------------SWFAVGCYYLMVGHKNEHARRYLSKAT  118 (330)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH------------------HHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            44667889999999999999999999999999876                  9999999999999 9999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      +++|.++.+|+.+|.++..+|++++|+..|++++ ..|++......+...+...++.
T Consensus       119 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B          119 TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred             HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence            9999999999999999999999999999999999 7776655544455554444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.01  E-value=1.2e-09  Score=110.12  Aligned_cols=96  Identities=16%  Similarity=0.157  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.+.|..+++.|+|++|+..|++||.++|+++.                  +++++|.++..+|+|++|+.++++|+
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~al  257 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK------------------GLSRRGEAHLAVNDFELARADFQKVL  257 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            578899999999999999999999999999999876                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHH-HHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMAL-DCFKETL  116 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~-~~~~~al  116 (518)
                      +++|++..+++.+|.++..+|++++|. ..|++++
T Consensus       258 ~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999994 4566665

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.01  E-value=1.8e-10  Score=103.90  Aligned_cols=111  Identities=11%  Similarity=0.074  Sum_probs=91.1

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      .++.++..|+|++|+..|.+++..+|.++.                  ++.++|.++...|++++|+..++++++++|++
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   77 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQNSE------------------QWALLGEYYLWQNDYSNSLLAYRQALQLRGEN   77 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            345567889999999999999999998876                  99999999999999999999999999999999


Q ss_pred             hHHHHHHHHH-HHhccCh--HHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535           89 FKALLCKGKI-LLSLNRY--SMALDCFKETL-VDAQASGSLETVNGFLEKSKK  137 (518)
Q Consensus        89 ~ka~~~~g~a-l~~lg~~--~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~  137 (518)
                      +.+++.+|.+ +...|++  ++|+..|++++ ..|+++.....+...+...++
T Consensus        78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  130 (177)
T 2e2e_A           78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN  130 (177)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc
Confidence            9999999999 8899999  99999999999 777665554445444444333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.00  E-value=4.2e-09  Score=103.55  Aligned_cols=109  Identities=10%  Similarity=-0.041  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-RDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-g~~~~Al~~~~~a   81 (518)
                      +..+.+.|+.+...|+|++|+..|++|+.+.|....            ......++.|+|.+|... |++++|+..+++|
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~------------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A  144 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ------------FRRGANFKFELGEILENDLHDYAKAIDCYELA  144 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            567788999999999999999999999999876533            011233899999999995 9999999999999


Q ss_pred             HhcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +++.|.+      ..++..+|.++..+|+|++|+.+|++++ ..|+++.
T Consensus       145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            9998754      5679999999999999999999999999 6665543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.00  E-value=2.1e-09  Score=107.77  Aligned_cols=103  Identities=10%  Similarity=0.064  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+..+|..++..|+|++|+..|++++...|.++.                  ++.++|.++..+|++++|+..+++++
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al  125 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME------------------AWQYLGTTQAENEQELLAISALRRCL  125 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            345788999999999999999999999999998766                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +++|+++.+++.+|.++..+|++++|+..|++++ ..|.++.
T Consensus       126 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  167 (368)
T 1fch_A          126 ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH  167 (368)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            9999999999999999999999999999999999 7776554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.99  E-value=4.1e-09  Score=99.36  Aligned_cols=105  Identities=8%  Similarity=-0.010  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh---------------
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR---------------   67 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~---------------   67 (518)
                      ...+...|..+++.|+|++|+..|++++...|++...               ..+++++|.++..               
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~---------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~  105 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---------------DYVMYMRGLTNMALDDSALQGFFGVDRS  105 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---------------HHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH---------------HHHHHHHHHHHHhhhhhhhhhhhccchh
Confidence            3578889999999999999999999999999987641               1167888888776               


Q ss_pred             ---ccCHHHHHHHHHHHHhcCCCchHHH-----------------HHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           68 ---LRDFDNALRDCEQALKIESSHFKAL-----------------LCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        68 ---lg~~~~Al~~~~~al~l~p~~~ka~-----------------~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                         +|++++|+..++++++.+|++..++                 +.+|.+|+..|+|++|+..|++++ ..|+++
T Consensus       106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence               6799999999999999999987655                 678999999999999999999999 777654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.99  E-value=2.5e-09  Score=105.48  Aligned_cols=103  Identities=13%  Similarity=0.081  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HhccCHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEAR----SRLRDFDNALRD   77 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~----~~lg~~~~Al~~   77 (518)
                      +.+.+...|..+.+.|++++|+..|++++..+|++..                    .+++.++    ...|++++|+..
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~--------------------~~l~~a~~~l~~~~~~~~eA~~~  188 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL--------------------TQLATAWVSLAAGGEKLQDAYYI  188 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH--------------------HHHHHHHHHHHhCchHHHHHHHH
Confidence            3556777888888889999999999998888776531                    1222111    122455555555


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           78 CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++++++.+|+++.+|+.+|.++..+|++++|+..|++++ .+|+++..
T Consensus       189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            555555555555555555555555555555555555555 44444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.98  E-value=2.6e-09  Score=87.37  Aligned_cols=67  Identities=16%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +++++|.+++.+|+|++|+..++++++++|+++.+|+.+|.+|..+|++++|++.|++++ ..|..+.
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            899999999999999999999999999999999999999999999999999999999999 6665444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.97  E-value=4e-09  Score=92.92  Aligned_cols=96  Identities=19%  Similarity=0.193  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|+|++|+..|.+++...|.++.                  ++.++|.++..+|++++|+..+++++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a~  108 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK------------------GYYRRAASNMALGKFRAALRDYETVV  108 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            566788999999999999999999999999998766                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHH--HHHHHHhccChHHHHHHHHHHH
Q 035535           83 KIESSHFKALLC--KGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l~p~~~ka~~~--~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +++|.+..++..  ++..+...|++++|+..+.++.
T Consensus       109 ~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A          109 KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            999999988854  4555888999999999998876

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.95  E-value=4.7e-09  Score=100.41  Aligned_cols=104  Identities=14%  Similarity=0.173  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++.+.......  ..+        ....++.++|.++..+|++++|+..+++++
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  112 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK--DHP--------AVAATLNNLAVLYGKRGKYKEAEPLCKRAL  112 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT--TCH--------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC--cch--------HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            5678889999999999999999999999986322100  000        112389999999999999999999999999


Q ss_pred             hc--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KI--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++        +|....+++.+|.++..+|++++|+..|++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B          113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            98        57889999999999999999999999999999

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.94  E-value=3.3e-09  Score=104.04  Aligned_cols=104  Identities=9%  Similarity=0.003  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+..+|..++..|+|++|+..|++++...|.+..                  ++.++|.++...|++++|+..++++++
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~   83 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE------------------AWRSLGLTQAENEKDGLAIIALNHARM   83 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45788999999999999999999999999998766                  899999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      ++|++..+++.+|.++...|++++|++.|++++ ..|.+....
T Consensus        84 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  126 (327)
T 3cv0_A           84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG  126 (327)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-
T ss_pred             cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH
Confidence            999999999999999999999999999999999 777666543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.94  E-value=8.5e-09  Score=101.59  Aligned_cols=95  Identities=13%  Similarity=0.133  Sum_probs=85.5

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535           11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK   90 (518)
Q Consensus        11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k   90 (518)
                      +.+...|++++|+..|+++++..|+++.                  ++.++|.++.++|++++|+..++++++++|+++.
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~------------------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPTLL------------------LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            3344568999999999999999998776                  9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccChHH-HHHHHHHHH-hccccCC
Q 035535           91 ALLCKGKILLSLNRYSM-ALDCFKETL-VDAQASG  123 (518)
Q Consensus        91 a~~~~g~al~~lg~~~~-A~~~~~~al-~~p~~~~  123 (518)
                      +++++|.++..+|++++ |.+++++++ ..|+++.
T Consensus       236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~  270 (291)
T 3mkr_A          236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF  270 (291)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence            99999999999999987 568889999 7876653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.94  E-value=2.4e-09  Score=86.63  Aligned_cols=91  Identities=13%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES   86 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p   86 (518)
                      .++|..++..|+|++|+..|++++..+|.++.                 .+++++|.++..+|++++|+..++++++++|
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKD-----------------EAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH-----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            56888999999999999999999998887632                 1788999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++..+++.        +.+.+|+..|++++ ..|+++
T Consensus        67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           67 DSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             TSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             CcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            99888754        67788888888888 666544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.93  E-value=5.4e-09  Score=112.59  Aligned_cols=104  Identities=8%  Similarity=-0.088  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      +...+...|..++..|++++|+..|+++++++|++..                  ++.++|.++.++|++++|++.++++
T Consensus        56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~a  117 (568)
T 2vsy_A           56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG------------------IALWLGHALEDAGQAEAAAAAYTRA  117 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhc---cChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESSHFKALLCKGKILLSL---NRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~l---g~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ++++|++..+++.+|.++..+   |++++|++.|++++ ..|++..
T Consensus       118 l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          118 HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence            999999999999999999999   99999999999999 7776543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.92  E-value=4.8e-09  Score=100.47  Aligned_cols=112  Identities=16%  Similarity=0.036  Sum_probs=91.6

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHH
Q 035535           13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKAL   92 (518)
Q Consensus        13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~   92 (518)
                      +...|+|++|+..|++++...+....   ..           ..++.++|.++...|++++|+..++++++++|+++.++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   80 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDD---ER-----------AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF   80 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHH---HH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCc---hh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH
Confidence            34568999999999999987432110   00           12899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           93 LCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        93 ~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      +.+|.++..+|++++|+..|++++ ..|.++.....+...+...++.
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  127 (275)
T 1xnf_A           81 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD  127 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH
Confidence            999999999999999999999999 7877665555555555444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.89  E-value=3.9e-08  Score=85.26  Aligned_cols=102  Identities=18%  Similarity=0.171  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++.+.+....            ......++.++|.++..+|++++|+..+++++
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            567788999999999999999999999999876543            11234489999999999999999999999999


Q ss_pred             hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++.+..      ..+++.+|.++..+|++++|+..+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            885542      6789999999999999999999999999

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.88  E-value=6.8e-09  Score=109.70  Aligned_cols=128  Identities=13%  Similarity=0.125  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------hhhHHH-HHHHH------HHHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---------QEASQL-SKLKK------SLCLALSNRAEARS   66 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~~~~~-~~~~~------~l~~~~~nra~a~~   66 (518)
                      +..+...|..++..|++++|+..|.+++...|. ...-.         ...++. .-+.+      ....++.++|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            345666677777777777777777777777665 22000         000000 00000      00125566666666


Q ss_pred             hccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           67 RLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        67 ~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      .+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.....+...
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  387 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI  387 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666 555444333333333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.86  E-value=1.3e-08  Score=97.37  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++.+......++  .+        ....++.++|.++..+|++++|+..+++++
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF--HP--------DVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--CH--------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC--Ch--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999853321100  00        112389999999999999999999999999


Q ss_pred             hc--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KI--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++        +|....+++.+|.++..+|++++|+..|++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99        78889999999999999999999999999999

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.84  E-value=9.5e-09  Score=108.01  Aligned_cols=94  Identities=17%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.++|..+++.|+|++|+..|++||.++|++..                  +|+++|.+|+.+|+|++|+.++++|+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~~g~a~~~~g~~~~A~~~~~~al  378 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK------------------GLYRRGEAQLLMNEFESAKGDFEKVL  378 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH------------------HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            567889999999999999999999999999999876                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKE  114 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~  114 (518)
                      +++|++..++..++.++..++++++|...+-+
T Consensus       379 ~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~  410 (457)
T 1kt0_A          379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYA  410 (457)
T ss_dssp             TTC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998865433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.84  E-value=2.2e-08  Score=104.22  Aligned_cols=118  Identities=12%  Similarity=0.037  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..++..|+|++|++.|++|+++.+....... .+.        ....|.|+|.+|..+|+|++|+.+++++++
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~-~~~--------~~~~~~nla~~y~~~g~~~~A~~~~~ka~~  122 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA-EIR--------SLVTWGNYAWVYYHMGRLSDVQIYVDKVKH  122 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC-TTT--------THHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc-chH--------HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            44667899999999999999999999998765432110 011        123799999999999999999999999998


Q ss_pred             cC--------CCchHHHHHHHHHHHhc--cChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535           84 IE--------SSHFKALLCKGKILLSL--NRYSMALDCFKETL-VDAQASGSLETVNG  130 (518)
Q Consensus        84 l~--------p~~~ka~~~~g~al~~l--g~~~~A~~~~~~al-~~p~~~~~~~~l~~  130 (518)
                      +.        +..+.++..+|.++..+  ++|++|+.+|++++ .+|+++.....+..
T Consensus       123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~  180 (472)
T 4g1t_A          123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAI  180 (472)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            73        45678899999888765  47999999999999 88877654443333

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.84  E-value=1.7e-08  Score=108.32  Aligned_cols=115  Identities=12%  Similarity=0.174  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..+.+.|++++|+..|+++++..|.....+..           ...+|.+++.++.+.|++++|+..+++++
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-----------WAATWANLGHAYRKLKMYDAAIDALNQGL  543 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3456677777777788888888888877775542211000           02289999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV  128 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l  128 (518)
                      +++|+++.+|+.+|.+|...|++++|++.|++++ ..|+++.....+
T Consensus       544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  590 (597)
T 2xpi_A          544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL  590 (597)
T ss_dssp             HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            9999999999999999999999999999999999 787665443333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.83  E-value=1.5e-08  Score=84.91  Aligned_cols=86  Identities=15%  Similarity=0.034  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|.+++...|.++.                  ++.++|.++..+|++++|+..+++++
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK------------------AYGRMGLALSSLNKHVEAVAYYKKAL  107 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            456788999999999999999999999999988765                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYS  106 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~  106 (518)
                      +++|++..+++.+|.++..+|+++
T Consensus       108 ~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A          108 ELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             hcCccchHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998863

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.2e-08  Score=86.46  Aligned_cols=83  Identities=11%  Similarity=0.075  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      .+.++|.++++.|+|++|+..++++++++|+++.+|+.+|.++..+|+|++|+.+|++++ ..|+++.....+...+...
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999 8887766555555555555


Q ss_pred             HHHH
Q 035535          136 KKLE  139 (518)
Q Consensus       136 ~~~~  139 (518)
                      ++.+
T Consensus        86 ~~~~   89 (126)
T 3upv_A           86 KEYA   89 (126)
T ss_dssp             TCHH
T ss_pred             hCHH
Confidence            4443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.82  E-value=1.3e-08  Score=90.43  Aligned_cols=86  Identities=14%  Similarity=0.049  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.+.|..+++.|+|++|+..|+++|.++|.++.                  +|+++|.++..+|+|++|+.++++++
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------a~~~~g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK------------------ALFRRAKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH------------------HHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            467889999999999999999999999999999876                  99999999999999999999999999


Q ss_pred             hcCCCch-HHHHHHHHHHHhccChH
Q 035535           83 KIESSHF-KALLCKGKILLSLNRYS  106 (518)
Q Consensus        83 ~l~p~~~-ka~~~~g~al~~lg~~~  106 (518)
                      +++|++. .....++.+...++++.
T Consensus       125 ~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A          125 RNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999998 45556666665554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.82  E-value=2.4e-08  Score=107.18  Aligned_cols=112  Identities=11%  Similarity=0.011  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..+.+.|++++|+..|++++...|.+..                  +|.+++.++.+.|++++|++.++++++
T Consensus       374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP------------------AWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455566666666666666666666666655544                  566666666666666666666666666


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      .+|++..+|+.+|.+|...|++++|++.|++++ ..|.++.....+...+.
T Consensus       436 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          436 LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            666666666666666666666666666666666 55544433333333333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.82  E-value=3.1e-09  Score=112.40  Aligned_cols=94  Identities=19%  Similarity=0.189  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+.+.|..+++.|+|++|+..|++|++++|.++.                  +++++|.++..+|++++|++.+++|
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~------------------~~~~lg~~~~~~g~~~eA~~~~~~a  100 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK------------------GYYRRAASNMALGKFRAALRDYETV  100 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHH--HHhccChHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKI--LLSLNRYSMALDCFK  113 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~a--l~~lg~~~~A~~~~~  113 (518)
                      ++++|++..++..++.+  +...|+|++|++.++
T Consensus       101 l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1          101 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999  889999999999999

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.82  E-value=2.1e-08  Score=98.30  Aligned_cols=103  Identities=14%  Similarity=0.097  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+|+......+.           .......+++|+|.+|.++|+|++|+..+++|+
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-----------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            346889999999999999999999999987654321           011234489999999999999999999999999


Q ss_pred             hcCCCc------hHHHHHHHHHHHhccC-hHHHHHHHHHHH
Q 035535           83 KIESSH------FKALLCKGKILLSLNR-YSMALDCFKETL  116 (518)
Q Consensus        83 ~l~p~~------~ka~~~~g~al~~lg~-~~~A~~~~~~al  116 (518)
                      ++.+..      +.+|+.+|.++..+|+ +++|+++|++|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            986543      7899999999999994 799999999999

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.82  E-value=2.8e-08  Score=97.41  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+|+.+....+..+           .....+++|+|.+|..+|+|++|+..+++++
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-----------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-----------EFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-----------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            45788899999999999999999999997654332200           0112389999999999999999999999999


Q ss_pred             hcCCC------chHHHHHHHHHHHhccChHHH-HHHHHHHH
Q 035535           83 KIESS------HFKALLCKGKILLSLNRYSMA-LDCFKETL  116 (518)
Q Consensus        83 ~l~p~------~~ka~~~~g~al~~lg~~~~A-~~~~~~al  116 (518)
                      ++.+.      ...+|+.+|.+|..+|++++| ..+|++|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            88643      278999999999999999999 88899998

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.81  E-value=2.2e-08  Score=84.90  Aligned_cols=85  Identities=9%  Similarity=0.024  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      .++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+.+|++++ ..|+++.....+...+...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999999999999999999999999999999999 8888777666777777666


Q ss_pred             HHHHHH
Q 035535          136 KKLEYQ  141 (518)
Q Consensus       136 ~~~~~~  141 (518)
                      ++.++.
T Consensus        99 g~~~~A  104 (121)
T 1hxi_A           99 HNANAA  104 (121)
T ss_dssp             HHHHHH
T ss_pred             CCHHHH
Confidence            665543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.80  E-value=1.6e-08  Score=93.01  Aligned_cols=94  Identities=10%  Similarity=0.030  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+.+.|..++..|+|++|+..|++++.++|.+..                  +++++|.++..+|+|++|+..++++++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK------------------ALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            67888999999999999999999999999998766                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHH-HHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMAL-DCFKET  115 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~-~~~~~a  115 (518)
                      ++|++..++..++.++..+++++++. ..|.+.
T Consensus       151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888 334443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.80  E-value=2e-08  Score=84.74  Aligned_cols=84  Identities=17%  Similarity=0.199  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++..+|++++|+..+++++
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK------------------GYTRKAAALEAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            567888999999999999999999999999998766                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccC
Q 035535           83 KIESSHFKALLCKGKILLSLNR  104 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~  104 (518)
                      +++|.+..+++.++.++..+|+
T Consensus       112 ~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          112 DLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999988764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.79  E-value=6.6e-08  Score=94.40  Aligned_cols=106  Identities=18%  Similarity=0.255  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|++++...|.++.              ....++.++|.++...|++++|+..+++++
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   70 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK--------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDL   70 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            467888999999999999999999999999877532              122389999999999999999999999999


Q ss_pred             hc------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           83 KI------ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++      .|....+++.+|.++..+|++++|+..|++++ ..+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  117 (338)
T 3ro2_A           71 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN  117 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence            88      56678899999999999999999999999999 555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.79  E-value=4.6e-09  Score=105.85  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+.+.|..+++.|+|++|+..|+++|.++|++..                  +|+++|.+|..+|+|++|+.++++++++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK------------------ALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999998876                  9999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHH-HhccChHHHHHHHHHHH-hccccCC
Q 035535           85 ESSHFKALLCKGKIL-LSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        85 ~p~~~ka~~~~g~al-~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +|++..++..++.+. ...+.++.+...|++++ ..|.++.
T Consensus       294 ~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -----------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            999999999999984 45577888999999999 6765543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.79  E-value=3.7e-08  Score=100.45  Aligned_cols=102  Identities=18%  Similarity=0.232  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|++++...|.+..              ....++.++|.++..+|++++|+..+++++
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR--------------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456788999999999999999999999999887642              123389999999999999999999999999


Q ss_pred             hc------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hc
Q 035535           83 KI------ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VD  118 (518)
Q Consensus        83 ~l------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~  118 (518)
                      ++      +|....+++.+|.+|..+|++++|+..|++++ ..
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            98      67888999999999999999999999999999 53

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=6.3e-08  Score=88.25  Aligned_cols=103  Identities=10%  Similarity=0.045  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|.+++.+......            ......++.++|.++..+|++++|+..++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   92 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD------------HTAEHRALHQVGMVERMAGNWDAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567888999999999999999999999998765432            0112348999999999999999999999999


Q ss_pred             Hhc------CC-CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           82 LKI------ES-SHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        82 l~l------~p-~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +++      +| ....+++.+|.++..+|++++|+..+++++
T Consensus        93 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            998      33 346789999999999999999999999999

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.78  E-value=4.4e-08  Score=88.34  Aligned_cols=114  Identities=15%  Similarity=0.045  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhh-----------hhHHHHHHHHH------HHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQ-----------EASQLSKLKKS------LCLALSNRAEA   64 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~-----------~~~~~~~~~~~------l~~~~~nra~a   64 (518)
                      +...+...|..++..|++++|+..|++++...| ++.....           ..+....+.+.      ...+++++|.+
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~  117 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ  117 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456788899999999999999999999988877 3321000           00001111111      13589999999


Q ss_pred             HHhccCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           65 RSRLRDFDNALRDCEQALKIESSH--FKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        65 ~~~lg~~~~Al~~~~~al~l~p~~--~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +..+|++++|+..++++++++|++  ..+++.+|.++..+|++++|+..|++++
T Consensus       118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            999999999999999999999976  6699999999999999999999999988

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.78  E-value=5.6e-08  Score=98.84  Aligned_cols=105  Identities=12%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..+...|+|++|+..|.+|+.+.+....            ......++.|+|.++..+|++++|+..+++|+
T Consensus       184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ------------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456788999999999999999999999999876543            11234589999999999999999999999999


Q ss_pred             h-----cC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           83 K-----IE-SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        83 ~-----l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      +     .+ |..+.+++.+|.++..+|++++|+..|++++ ..+
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9     57 8889999999999999999999999999999 443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.78  E-value=1.7e-08  Score=89.73  Aligned_cols=86  Identities=14%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-------chH-----HHHHHHHHHHhccChHHHHHHHHHHH-h-----
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESS-------HFK-----ALLCKGKILLSLNRYSMALDCFKETL-V-----  117 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~-------~~k-----a~~~~g~al~~lg~~~~A~~~~~~al-~-----  117 (518)
                      ..+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|++++ .     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            37899999999999999999999999999999       444     99999999999999999999999999 8     


Q ss_pred             --ccccCCcH----HHHHHHHHHHHHHHHH
Q 035535          118 --DAQASGSL----ETVNGFLEKSKKLEYQ  141 (518)
Q Consensus       118 --~p~~~~~~----~~l~~~l~~~~~~~~~  141 (518)
                        +|+++..+    ......+..+++.++.
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA  121 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEA  121 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHH
Confidence              88777766    6666777777766654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.78  E-value=2.3e-08  Score=83.86  Aligned_cols=74  Identities=8%  Similarity=-0.015  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|+++++++|+++.                  +++++|.++..+|++++|+..++++
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA------------------LRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHH
Q 035535           82 LKIESSHFKALL   93 (518)
Q Consensus        82 l~l~p~~~ka~~   93 (518)
                      ++.+|+++....
T Consensus        88 l~~~p~~~~~~~   99 (117)
T 3k9i_A           88 IAETSDDETIQS   99 (117)
T ss_dssp             HHHHCCCHHHHH
T ss_pred             HHhCCCcHHHHH
Confidence            999999987653

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*

Probab=98.77  E-value=8.5e-09  Score=107.81  Aligned_cols=67  Identities=22%  Similarity=0.238  Sum_probs=51.8

Q ss_pred             ceeEeecccccccCCCCCCc---eEEee--------CCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEee
Q 035535          308 YGLGLWALASFINHSCSPNA---RRVHV--------GDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCK  376 (518)
Q Consensus       308 ~~~gl~~~~s~~NHsC~PN~---~~~~~--------~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~  376 (518)
                      .+.+|.|.+.++||+|.||.   .+.+.        ++.++++|.++|++||||++||++.. +   ..+|+..|||.+.
T Consensus       182 ~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~sYG~~~-~---N~~LL~~YGFv~~  257 (440)
T 2h21_A          182 ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNK-S---NAELALDYGFIEP  257 (440)
T ss_dssp             -CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEECSCTTC-C---HHHHHHHSSCCCS
T ss_pred             CceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEeCCCCC-C---HHHHHHhCCCCcC
Confidence            35789999999999999874   33332        34799999999999999999999752 1   2357789999876


Q ss_pred             cC
Q 035535          377 CK  378 (518)
Q Consensus       377 C~  378 (518)
                      -.
T Consensus       258 ~n  259 (440)
T 2h21_A          258 NE  259 (440)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.77  E-value=2.6e-08  Score=104.27  Aligned_cols=100  Identities=12%  Similarity=0.101  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++..+|++++|+..++++++.
T Consensus       306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~  367 (514)
T 2gw1_A          306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF------------------PYIQLACLAYRENKFDDCETLFSEAKRK  367 (514)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH------------------HHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4455566666666666666666666666655544                  5666666666666666666666666666


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +|+++.+++.+|.++..+|++++|+..|++++ ..|.++
T Consensus       368 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  406 (514)
T 2gw1_A          368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD  406 (514)
T ss_dssp             STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred             cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            66666666666666666666666666666666 455443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.77  E-value=4.2e-08  Score=97.06  Aligned_cols=106  Identities=14%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+.+.|..+.. |+|++|+..|++|+.+.|....            ......++.|+|.++.++|+|++|+..++++++
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER------------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445566666666 6666666666666666654321            001123677777777777777777777777777


Q ss_pred             cCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHHhccccC
Q 035535           84 IESSH------FKALLCKGKILLSLNRYSMALDCFKETLVDAQAS  122 (518)
Q Consensus        84 l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~  122 (518)
                      +.|.+      ..+++.+|.+++.+|++++|+.+|++++..|...
T Consensus       184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~  228 (307)
T 2ifu_A          184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFS  228 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTST
T ss_pred             HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Confidence            65433      2366777777777777777777777777444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.77  E-value=2e-08  Score=89.38  Aligned_cols=80  Identities=14%  Similarity=0.049  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++..+...|..++..|+|++|+..|++++.++|++..                  +|+++|.++..+|++++|+..++++
T Consensus        44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK------------------AWSRLGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3567889999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKIL   99 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al   99 (518)
                      ++++|++..+|+.++.+.
T Consensus       106 l~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A          106 IEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHSSSCCHHHHHHHHH
T ss_pred             HHhCCCchHHHHHHHHHH
Confidence            999999999888776543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.76  E-value=3.4e-08  Score=80.86  Aligned_cols=66  Identities=14%  Similarity=0.186  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++.++|.+++..|+|++|+..++++++++|+++.+++.+|.++..+|+|++|+..|++++ ..|+++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   72 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE   72 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc
Confidence            899999999999999999999999999999999999999999999999999999999999 777653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.76  E-value=3.7e-08  Score=77.60  Aligned_cols=72  Identities=19%  Similarity=0.356  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV  128 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l  128 (518)
                      ++.++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.....+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999 777655443333

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.76  E-value=7.2e-08  Score=97.98  Aligned_cols=105  Identities=17%  Similarity=0.120  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+|+.+.+....            ......++.|+|.++..+|++++|+..+++|+
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN------------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            456778999999999999999999999998765432            11234489999999999999999999999999


Q ss_pred             h-----cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           83 K-----IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        83 ~-----l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      +     .+|..+.+++.+|.++..+|++++|+..|++++ ..+
T Consensus       250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9     889899999999999999999999999999999 543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.76  E-value=4.5e-08  Score=96.87  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+.+.|+.+...|+|++|+..|.+|+.+.+....            ......++.|+|.+|.. |+|++|+..+++|++
T Consensus        77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~------------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT------------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            45566667777777777777777777776544322            01123378888888888 888888888888888


Q ss_pred             cCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           84 IESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        84 l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +.|..      ..++..+|.+|..+|+|++|+.+|++++ ..|.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            86543      5678888888888888888888888888 555444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.75  E-value=4.9e-08  Score=96.47  Aligned_cols=89  Identities=12%  Similarity=0.042  Sum_probs=57.7

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHH-HhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535           10 ATELLLREEWKESVQVYTQFID-LCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus        10 Gn~~~~~g~~~~Ai~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      |+.....+++++|+..|++|+. +.|++..                  +|.++|..+.++|++++|...++++++++|.+
T Consensus        71 g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  132 (308)
T 2ond_A           71 GDMNNAKLFSDEAANIYERAISTLLKKNML------------------LYFAYADYEESRMKYEKVHSIYNRLLAIEDID  132 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTTTTTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC
T ss_pred             cchhhcccchHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Confidence            3333445666666666666666 4665544                  66666666666666666666666666666666


Q ss_pred             hH-HHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           89 FK-ALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        89 ~k-a~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +. +|..+|.++...|++++|+..|++++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A          133 PTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             THHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            65 66666666666666666666666666

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.75  E-value=8.2e-08  Score=97.08  Aligned_cols=106  Identities=18%  Similarity=0.255  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|++++...|.++.              ....++.++|.++..+|+|++|+..+++++
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   74 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK--------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDL   74 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH--------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            557889999999999999999999999999877542              123389999999999999999999999999


Q ss_pred             hc------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           83 KI------ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      .+      +|....+++.+|.++..+|++++|+..|++++ ..|...
T Consensus        75 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  121 (406)
T 3sf4_A           75 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN  121 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence            87      45668899999999999999999999999999 665443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.75  E-value=6.5e-08  Score=98.32  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|++++|+..|.+|+.+.+.....           ....+.++.++|.++..+|+|++|+..+++|
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-----------NIRLLQCHSLFATNFLDLKQYEDAISHFQKA  210 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc-----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35677889999999999999999999999988765420           1122348999999999999999999999999


Q ss_pred             HhcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535           82 LKIESSH------FKALLCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        82 l~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                      +++.|..      ..+++.+|.+|..+|++++|+.+|++++.
T Consensus       211 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9885433      36899999999999999999999999993

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.74  E-value=8.5e-08  Score=83.09  Aligned_cols=101  Identities=13%  Similarity=0.163  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..++..|+|++|+..|.+++.+.+....            ......++.++|.++..+|++++|+..++++++
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46778999999999999999999999999876533            112234899999999999999999999999998


Q ss_pred             cCC------CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 IES------SHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l~p------~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +.+      ....+++.+|.++..+|++++|++.+++++
T Consensus       118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A          118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            732      236789999999999999999999999998

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.73  E-value=6.1e-08  Score=94.17  Aligned_cols=104  Identities=16%  Similarity=0.182  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|.+++.+.......  ..+        ....++.++|.++..+|++++|+..+++++
T Consensus       111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK--DHP--------DVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT--TCH--------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC--CCh--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567889999999999999999999999986322000  000        112389999999999999999999999999


Q ss_pred             hc--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KI--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++        +|....+++.+|.++..+|++++|+..|++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            98        78888999999999999999999999999999

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.73  E-value=2.5e-08  Score=88.46  Aligned_cols=70  Identities=16%  Similarity=0.138  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhhhcH----------HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 035535            2 LMQQLRSKATELLLREEW----------KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR--   69 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~----------~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg--   69 (518)
                      +++.|.+.|+.+...+++          ++|+..|++||+++|+...                  +|+|+|.+|..+|  
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~------------------A~~~LG~ay~~lg~l   96 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE------------------AVWCIGNAYTSFAFL   96 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH------------------HHHHHHHHHHHhccc
Confidence            578899999999998875          5999999999999999887                  9999999999985  


Q ss_pred             ---------CHHHHHHHHHHHHhcCCCch
Q 035535           70 ---------DFDNALRDCEQALKIESSHF   89 (518)
Q Consensus        70 ---------~~~~Al~~~~~al~l~p~~~   89 (518)
                               +|++|++.+++|++++|++.
T Consensus        97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           97 TPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             CcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence                     89999999999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.73  E-value=4.2e-08  Score=79.99  Aligned_cols=69  Identities=12%  Similarity=0.160  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|+++++++|+++.                  +|+++|.++..+|++++|+..++++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG------------------TYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4677899999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCc
Q 035535           82 LKIESSH   88 (518)
Q Consensus        82 l~l~p~~   88 (518)
                      +++.|.+
T Consensus        68 l~l~~~~   74 (100)
T 3ma5_A           68 IEVAREE   74 (100)
T ss_dssp             HHHHHHH
T ss_pred             HhhhhcC
Confidence            9997754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.73  E-value=6.7e-08  Score=104.27  Aligned_cols=115  Identities=12%  Similarity=0.106  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHhhhc----------HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 035535            2 LMQQLRSKATELLLREE----------WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR--   69 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~----------~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg--   69 (518)
                      +...|..+|..+...|+          +++|+..|.+++..+|.+..                  +|++|+-++.+++  
T Consensus        62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~------------------aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------------------TWHHRCWLLSRLPEP  123 (567)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTCSSC
T ss_pred             hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcccc
Confidence            46789999999999988          99999999999999999877                  9999999999999  


Q ss_pred             CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-ChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           70 DFDNALRDCEQALKIESSHFKALLCKGKILLSLN-RYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        70 ~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg-~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      ++++|++.+++++++||.+..||..++.++..+| .+++|++++.+++ .+|.+...+.....++..
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            7799999999999999999999999999999999 9999999999999 888776665555555544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.72  E-value=6e-08  Score=94.25  Aligned_cols=104  Identities=14%  Similarity=0.194  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|.+++.+.......+  .+        ....++.++|.++..+|++++|+..+++++
T Consensus        69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  138 (311)
T 3nf1_A           69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD--HP--------AVAATLNNLAVLYGKRGKYKEAEPLCKRAL  138 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT--CH--------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--Ch--------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            45678899999999999999999999999863321100  00        112389999999999999999999999999


Q ss_pred             hcC--------CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KIE--------SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l~--------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++.        |....+++.+|.++..+|++++|++.|++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            873        6778899999999999999999999999999

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.71  E-value=3.8e-08  Score=100.49  Aligned_cols=91  Identities=18%  Similarity=0.202  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.++|..+++.|+|++|+..|++||+++|+++.                  +++++|.+|..+|+|++|+.++++|+
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~eA~~~l~~Al  334 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK------------------ALYRRAQGWQGLKEYDQALADLKKAQ  334 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH------------------HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            467888999999999999999999999999998876                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDC  111 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~  111 (518)
                      +++|++..++..++.++..++++++|.+.
T Consensus       335 ~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          335 EIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=1.6e-07  Score=90.49  Aligned_cols=109  Identities=9%  Similarity=0.082  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDNALRD   77 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~Al~~   77 (518)
                      ++..+...|..++..|++++|+..|+++++  |+++.                  +++++|.++..    .+++++|+..
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~------------------a~~~lg~~~~~g~~~~~~~~~A~~~   64 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS------------------GCFNLGVLYYQGQGVEKNLKKAASF   64 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH------------------HHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH------------------HHHHHHHHHHcCCCcCCCHHHHHHH
Confidence            467888999999999999999999999998  44444                  89999999999    9999999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHHhccccCCcHHHHHHHHH
Q 035535           78 CEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETLVDAQASGSLETVNGFLE  133 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~  133 (518)
                      ++++++++  ++.+++.+|.+|..    .+++++|+..|++++.. +++.....+..++.
T Consensus        65 ~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~  121 (273)
T 1ouv_A           65 YAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYH  121 (273)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHH
Confidence            99999986  78999999999999    99999999999999933 23333344444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.67  E-value=1.1e-07  Score=76.78  Aligned_cols=79  Identities=23%  Similarity=0.144  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhccC---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           57 ALSNRAEARSRLRD---FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        57 ~~~nra~a~~~lg~---~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      ++..+|.+++..++   .++|...+++|+++||+++++++.+|.+++..|+|++|+..|++++ .+|. ......+...+
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I   86 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESI   86 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHH
Confidence            89999999987666   7999999999999999999999999999999999999999999999 7887 55666777766


Q ss_pred             HHHH
Q 035535          133 EKSK  136 (518)
Q Consensus       133 ~~~~  136 (518)
                      .+.+
T Consensus        87 ~~A~   90 (93)
T 3bee_A           87 NKAK   90 (93)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.67  E-value=6.8e-08  Score=77.85  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           58 LSNRAEARSRLRDFDNALRDCEQALKIESSHFK-ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        58 ~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k-a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      .+++|.++++.|+|++|+..++++++.+|+++. +++.+|.++..+|++++|+..|++++ ..|+++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   71 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL   71 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            457899999999999999999999999999999 99999999999999999999999999 78766543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.66  E-value=8.9e-08  Score=93.89  Aligned_cols=115  Identities=11%  Similarity=-0.012  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhh----------hhHHHHHHHHH------HHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQ----------EASQLSKLKKS------LCLALSNRAEAR   65 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~----------~~~~~~~~~~~------l~~~~~nra~a~   65 (518)
                      +...+...|..+...|++++|+..|++++..+|+.......          ..+....+.+.      ...+++++|.++
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l  229 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL  229 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            35667778888888888888887777776666532110000          00000001110      123899999999


Q ss_pred             HhccCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           66 SRLRDFDNALRDCEQALKIESSH--FKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        66 ~~lg~~~~Al~~~~~al~l~p~~--~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ...|++++|+..+.++++.+|++  ..++.++|.++..+|+.++|...|++++
T Consensus       230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            99999999999999999999998  8999999999999999999999999988

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.66  E-value=1.1e-07  Score=93.92  Aligned_cols=86  Identities=10%  Similarity=0.089  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 035535           20 KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKIL   99 (518)
Q Consensus        20 ~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al   99 (518)
                      ++|+..|++++.+.|.++.                 .+|.+++.++.+.|++++|+..+++|++.+|.+..+|...+...
T Consensus       116 ~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  178 (308)
T 2ond_A          116 EKVHSIYNRLLAIEDIDPT-----------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTH-----------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCcc-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4566667777766665432                 15777777777777777777777777777777766666555443


Q ss_pred             Hh-ccChHHHHHHHHHHH-hccccC
Q 035535          100 LS-LNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus       100 ~~-lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +. +|++++|+..|++++ ..|+++
T Consensus       179 ~~~~~~~~~A~~~~~~al~~~p~~~  203 (308)
T 2ond_A          179 YYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            32 577777777777777 555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.66  E-value=2.9e-07  Score=93.01  Aligned_cols=107  Identities=17%  Similarity=0.157  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++.+.+....            ......++.++|.++..+|++++|+..+++++
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTL  254 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            346788999999999999999999999999887543            11233489999999999999999999999999


Q ss_pred             hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      ++.|..      ..+++.+|.++..+|++++|+..|++++ ..+..
T Consensus       255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence            987765      7799999999999999999999999999 55443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.66  E-value=2.8e-07  Score=89.85  Aligned_cols=107  Identities=17%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|.+++.+.+....            ......++.++|.++..+|++++|+..+++++
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            346778899999999999999999999999877543            11223489999999999999999999999999


Q ss_pred             hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      ++.|..      ..+++.+|.++..+|++++|+..|++++ ..+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  296 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  296 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            987655      7789999999999999999999999999 55443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.66  E-value=2.2e-07  Score=94.63  Aligned_cols=107  Identities=11%  Similarity=0.166  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++.+.+....            ......++.++|.++..+|++++|+..+++++
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD------------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            346778999999999999999999999999887543            11223489999999999999999999999999


Q ss_pred             hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      ++.|..      ..+++.+|.++..+|++++|+.+|++++ ..+..
T Consensus       291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            987744      7889999999999999999999999999 55443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.65  E-value=9.7e-08  Score=81.40  Aligned_cols=82  Identities=12%  Similarity=0.038  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      .++++|.+++..|+|++|+..++++++++|+++.+++.+|.++..+|+|++|+..|++++ ..|+++.....+...+...
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999 7877665555555555544


Q ss_pred             HHH
Q 035535          136 KKL  138 (518)
Q Consensus       136 ~~~  138 (518)
                      ++.
T Consensus        91 ~~~   93 (137)
T 3q49_B           91 ESY   93 (137)
T ss_dssp             TCH
T ss_pred             hhH
Confidence            443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.65  E-value=1.6e-07  Score=77.72  Aligned_cols=83  Identities=16%  Similarity=0.242  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|++++|+..|.+++...|.+..                  ++.++|.++..+|++++|+..+++++
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------AWYNLGNAYYKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            456788999999999999999999999999888765                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhcc
Q 035535           83 KIESSHFKALLCKGKILLSLN  103 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg  103 (518)
                      +++|+++.++..+|.++...|
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A          105 ELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.64  E-value=1.9e-07  Score=76.53  Aligned_cols=79  Identities=16%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|+|++|+..|.+++...|.++.                  ++.++|.++..+|++++|+..+++++
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK------------------GYSRKAAALEFLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            466788999999999999999999999999998765                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKIL   99 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al   99 (518)
                      +++|+++.++..++.+.
T Consensus       100 ~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A          100 KHEANNPQLKEGLQNME  116 (118)
T ss_dssp             TTCTTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHhh
Confidence            99999999999888775

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.63  E-value=3.1e-08  Score=80.68  Aligned_cols=64  Identities=23%  Similarity=0.394  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      ++.++|.++...|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|++++ ..|.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            789999999999999999999999999999999999999999999999999999999999 6665

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.63  E-value=2e-07  Score=92.51  Aligned_cols=115  Identities=7%  Similarity=-0.068  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHH----Hhc---cCHH
Q 035535            2 LMQQLRSKATELLLRE--EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEAR----SRL---RDFD   72 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g--~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~----~~l---g~~~   72 (518)
                      +...|..+|..+...|  ++++|+..+.++|..+|.+..                  +|.+|+.++    ..+   ++++
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~------------------aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ------------------IWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH------------------HHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH------------------HHHHHHHHHHHHHHhccccCCHH
Confidence            4577899999999999  999999999999999999987                  999999999    777   7899


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHhccChH--HHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           73 NALRDCEQALKIESSHFKALLCKGKILLSLNRYS--MALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        73 ~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~--~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      +++..++++++.+|.+..+|+.++.++..++.++  ++++.+.+++ .+|.|-..+.....++..
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999  9999999999 777665544433344433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.62  E-value=1.1e-07  Score=102.45  Aligned_cols=117  Identities=10%  Similarity=0.137  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHH
Q 035535            2 LMQQLRSKATELLLRE--EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDC   78 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g--~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~   78 (518)
                      ....|..+|..+.+.+  +|++|++.|.++++.+|.+..                  +|.+|+.+..++| .++++++++
T Consensus       106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~------------------aW~~R~~~l~~l~~~~~~el~~~  167 (567)
T 1dce_A          106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH------------------CWDYRRFVAAQAAVAPAEELAFT  167 (567)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc------------------HHHHHHHHHHHcCCChHHHHHHH
Confidence            3568899999999999  789999999999999999977                  9999999999999 999999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHhc--------------cChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535           79 EQALKIESSHFKALLCKGKILLSL--------------NRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK  136 (518)
Q Consensus        79 ~~al~l~p~~~ka~~~~g~al~~l--------------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~  136 (518)
                      +++++.+|.+..||+.+|.++..+              +.+++|++++.+|+ .+|++...+..+.-++.+..
T Consensus       168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence            999999999999999999999986              67899999999999 89988877766666665443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.62  E-value=4.2e-07  Score=96.05  Aligned_cols=104  Identities=12%  Similarity=0.078  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.+++..+..+|+|++|+..|.++|++......+.  .|        .....+.|+|.+|..+|+|++|+..+++++
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~--Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  378 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT--NL--------YVLRLLSIASEVLSYLQAYEEASHYARRMV  378 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT--SH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC--CH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34455667778889999999999999999864433211  11        123489999999999999999999999999


Q ss_pred             hc-----C---CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KI-----E---SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l-----~---p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++     .   |+-..++.++|.+|..+|+|++|+..|++|+
T Consensus       379 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            76     3   4456689999999999999999999999999

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.61  E-value=1.3e-08  Score=99.65  Aligned_cols=103  Identities=11%  Similarity=0.095  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++..+.+.|..+++.|+|++|+..|++++.++|++..                  +++++|.++..+|++++|+.+++++
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a   98 (281)
T 2c2l_A           37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK------------------AHFFLGQCQLEMESYDEAIANLQRA   98 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999998876                  9999999999999999999999999


Q ss_pred             HhcCCCch-------HHHHHHHH----------------------HHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHF-------KALLCKGK----------------------ILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~-------ka~~~~g~----------------------al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++++|++.       ...++++.                      ..+..|++++|++.|++++ ..|++.
T Consensus        99 l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~  169 (281)
T 2c2l_A           99 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDG  169 (281)
T ss_dssp             HHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHH
T ss_pred             HHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence            99998652       11111110                      1123688999999999999 666443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.61  E-value=2.5e-07  Score=76.28  Aligned_cols=83  Identities=13%  Similarity=0.031  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.....|..++..|+|..|+..|.+|+...+.....+...+           .++.++|.|++++|++++|+..+++++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~-----------~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKV-----------SVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHH-----------HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            567889999999999999999999999998754321111111           288999999999999999999999999


Q ss_pred             hcCCCchHHHHHHH
Q 035535           83 KIESSHFKALLCKG   96 (518)
Q Consensus        83 ~l~p~~~ka~~~~g   96 (518)
                      +++|++..++.+++
T Consensus        74 ~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           74 ELDPEHQRANGNLK   87 (104)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             hcCCCCHHHHhhHH
Confidence            99999999887776

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.61  E-value=1.4e-07  Score=93.63  Aligned_cols=116  Identities=11%  Similarity=0.060  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHH----Hhh---hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHH--H
Q 035535            3 MQQLRSKATEL----LLR---EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFD--N   73 (518)
Q Consensus         3 a~~l~~~Gn~~----~~~---g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~--~   73 (518)
                      ...|..++..+    ...   +++++++..+.+++..+|.+..                  +|.+|+.+..+++.++  +
T Consensus       103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~------------------aW~~R~~vl~~l~~~~~~~  164 (306)
T 3dra_A          103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH------------------VWSYRKWLVDTFDLHNDAK  164 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhcccChHH
Confidence            45677788887    555   7899999999999999999977                  9999999999999999  9


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHhccC------hHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535           74 ALRDCEQALKIESSHFKALLCKGKILLSLNR------YSMALDCFKETL-VDAQASGSLETVNGFLEKSK  136 (518)
Q Consensus        74 Al~~~~~al~l~p~~~ka~~~~g~al~~lg~------~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~  136 (518)
                      +++.++++++.||.|..||..++.++..+++      ++++++++++++ .+|+|...+.....++.+.+
T Consensus       165 EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          165 ELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD  234 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence            9999999999999999999999999999998      999999999999 88877766666666665433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.58  E-value=3.9e-07  Score=92.50  Aligned_cols=104  Identities=17%  Similarity=0.074  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++.+|+..|.+|+.+.+.....           ....+.++.++|.++..+|+|++|++.+++|+
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-----------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc-----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            5567788999999999999999999999988764320           01234489999999999999999999999999


Q ss_pred             hcCC------CchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535           83 KIES------SHFKALLCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        83 ~l~p------~~~ka~~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                      ++.+      ....+++++|.++..+|++++|+.+|++++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8732      2356899999999999999999999999993

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.57  E-value=3.8e-07  Score=91.20  Aligned_cols=112  Identities=11%  Similarity=0.129  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q 035535            3 MQQLRSKATELLLRE--EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCE   79 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g--~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~   79 (518)
                      ...|..++..+...+  +|++++..+.++++.+|.+..                  +|.+|+.+...+|. ++++++.++
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~------------------AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH------------------CWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhCcCHHHHHHHHH
Confidence            345666666666655  366677777777776666655                  67777776666666 466777777


Q ss_pred             HHHhcCCCchHHHHHHHHHHHhc--------------cChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           80 QALKIESSHFKALLCKGKILLSL--------------NRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        80 ~al~l~p~~~ka~~~~g~al~~l--------------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      ++++.+|.|..||..++.++..+              +.++++++++.+++ .+|+|...+.-+.-++
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            77777777777777776666666              45666777777776 6665554443333333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.57  E-value=1.5e-07  Score=91.75  Aligned_cols=100  Identities=14%  Similarity=-0.031  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .....|..+++.|+|++|+..|++++...+..                .-..+++++|.++..+|++++|+..+++++..
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~----------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g  200 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF----------------LAGAAGVAHGVAAANLALFTEAERRLTEANDS  200 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc----------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence            45667778888888888888887665432110                00128899999999999999999999999865


Q ss_pred             C--CC-chHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           85 E--SS-HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        85 ~--p~-~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      +  |. .+.+++++|.++..+|+.++|...|++++ ..|+
T Consensus       201 ~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          201 PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            4  66 67799999999999999999999999999 6663

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.56  E-value=7.9e-07  Score=88.91  Aligned_cols=116  Identities=12%  Similarity=0.097  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHhhhc----------HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-
Q 035535            2 LMQQLRSKATELLLREE----------WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-   70 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~----------~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-   70 (518)
                      +...|..++..+...+.          +++++..+..+|..+|.+..                  +|.+|+.++.++++ 
T Consensus        63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~------------------aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------------------TWHHRCWLLSRLPEP  124 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHCSSC
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHhccCcc
Confidence            45678888888877665          79999999999999999877                  99999999999994 


Q ss_pred             -HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccC-hHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           71 -FDNALRDCEQALKIESSHFKALLCKGKILLSLNR-YSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        71 -~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~-~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                       +++++..+++++++||.|..||..++.++..+|. ++++++++.+++ .+|.|...+.....++...
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence             9999999999999999999999999999999999 699999999999 8887776666666666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.56  E-value=2.1e-07  Score=77.38  Aligned_cols=70  Identities=13%  Similarity=0.004  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|.+++.++|.+..                  +++++|.++..+|++++|+..++++
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV------------------AWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999998876                  8999999999999999999999999


Q ss_pred             HhcCCCch
Q 035535           82 LKIESSHF   89 (518)
Q Consensus        82 l~l~p~~~   89 (518)
                      ++++|.+.
T Consensus        80 l~~~~~~~   87 (115)
T 2kat_A           80 LAAAQSRG   87 (115)
T ss_dssp             HHHHHHHT
T ss_pred             HHhccccc
Confidence            99988543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.56  E-value=6.8e-07  Score=81.27  Aligned_cols=103  Identities=12%  Similarity=0.078  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..+...|++++|+..|.+++.+.......           ......++.++|.++..+|++++|+..+++++
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPED-----------PLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4567889999999999999999999999996543310           01123489999999999999999999999999


Q ss_pred             hcCCC------chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KIESS------HFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l~p~------~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++.+.      ...++..+|.++..+|++++|++.|++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            76321      23457899999999999999999999999

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.55  E-value=5.5e-07  Score=93.63  Aligned_cols=99  Identities=10%  Similarity=0.112  Sum_probs=79.1

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI---   84 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l---   84 (518)
                      +.+...-..|+|++|+..|.++|++......+.  .+        .....+.|+|.+|..+|+|++|+..+++++++   
T Consensus       303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~--Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~  372 (433)
T 3qww_A          303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDS--NV--------YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK  372 (433)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT--SH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccCHHHHHHHHHHHHHHhhCccChh--ch--------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            334444456889999999999999754332211  11        12338999999999999999999999999976   


Q ss_pred             -----CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 -----ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 -----~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                           +|+-...++++|.+|..+|+|++|+..|++|+
T Consensus       373 ~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          373 HYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence                 34456789999999999999999999999999

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.54  E-value=3.8e-07  Score=89.24  Aligned_cols=101  Identities=15%  Similarity=0.096  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK---   83 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~---   83 (518)
                      ...|..++..++|++|+..|.+|+.+.+.....            .....++.++|.+|..+|+|++|+..+++|++   
T Consensus       119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  186 (293)
T 3u3w_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHHhcccccH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            347888888889999999999999876543320            01223799999999999999999999999994   


Q ss_pred             ----cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           84 ----IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        84 ----l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                          ..+....+++++|.+|..+|+|++|+..+++++ ..+
T Consensus       187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence                234456799999999999999999999999999 543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.53  E-value=4e-07  Score=84.89  Aligned_cols=31  Identities=3%  Similarity=-0.135  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDL   32 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~   32 (518)
                      ++..+...|..++..+++++|+..|++|++.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~   47 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ   47 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence            4567888899999999999999999998875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.53  E-value=2.2e-07  Score=96.64  Aligned_cols=99  Identities=11%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--------------
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL--------------   68 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l--------------   68 (518)
                      ...+...|..+...|++++|+..|.+|+...|+++.                  ++.++|.+|...              
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~y~~~~~~~~~~~~~~~~~  308 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY------------------LHCQIGCCYRAKVFQVMNLRENGMYG  308 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH------------------HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            456788999999999999999999999999999876                  788888877543              


Q ss_pred             -----cCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           69 -----RDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        69 -----g~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                           +.+++|+..++++++++|.+..+++.+|.++..+|+|++|+.+|++++ ..|
T Consensus       309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence                 457889999999999999999999999999999999999999999999 554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.52  E-value=1.8e-06  Score=84.44  Aligned_cols=102  Identities=11%  Similarity=0.052  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+..++..++..|+|++|++.|.+++...+....            .......++++|.++...|++++|+..+++|+
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  142 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE------------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLL  142 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH------------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            456778899999999999999999999998765322            01122357789999999999999999999999


Q ss_pred             hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++.+..      ..+++.+|.+|..+|+|++|+.+|++++
T Consensus       143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal  182 (293)
T 2qfc_A          143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            875433      6689999999999999999999999999

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}

Probab=98.51  E-value=2.8e-07  Score=82.65  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             cccccCCCC---CCceEEeeCCEEEEEEcCCCCCCCeEEeecCCCC
Q 035535          316 ASFINHSCS---PNARRVHVGDYIIVHASRDVKAGEEITFAYFDML  358 (518)
Q Consensus       316 ~s~~NHsC~---PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~  358 (518)
                      ..++||+|.   +|+.....++++.++|+|||++||||++.|.+.+
T Consensus       102 mR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y  147 (170)
T 3ep0_A          102 MTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSH  147 (170)
T ss_dssp             GGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred             eeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHH
Confidence            578999997   8998888899999999999999999999999865

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=4.9e-07  Score=77.58  Aligned_cols=80  Identities=19%  Similarity=0.175  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...+...|..++..|+|++|+..|.+++...|.++.                  +++++|.++..+|++++|+..+++++
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK------------------ALYRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            567888999999999999999999999999998765                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILL  100 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~  100 (518)
                      +++|++..++..++.+..
T Consensus       127 ~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          127 SLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHCSSCHHHHHHHHHHHC
T ss_pred             HcCCCcHHHHHHHHHHHh
Confidence            999999999888777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.50  E-value=1e-06  Score=91.71  Aligned_cols=103  Identities=15%  Similarity=0.166  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +.+......+..+|+|++|+..|++++++......+  ..+        .....+.|+|.+|..+|+|++|+..+++++.
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~--~h~--------~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPD--INI--------YQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCT--TSH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCc--cch--------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            445556667888999999999999999864332210  001        1233899999999999999999999999997


Q ss_pred             c--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 I--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +        +|.-...++++|.+|..+|+|++|+..|++|+
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            6        34446689999999999999999999999999

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.50  E-value=1e-06  Score=84.80  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHH
Q 035535            2 LMQQLRSKATELLL----REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDN   73 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~----~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~   73 (518)
                      .+..+...|..++.    .+++++|+..|+++++..  ++.                  +++++|.++..    .+++++
T Consensus        37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~------------------a~~~lg~~~~~g~~~~~~~~~   96 (273)
T 1ouv_A           37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN------------------GCHLLGNLYYSGQGVSQNTNK   96 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH------------------HHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH------------------HHHHHHHHHhCCCCcccCHHH
Confidence            35677889999999    999999999999999874  333                  89999999999    999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHHh
Q 035535           74 ALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETLV  117 (518)
Q Consensus        74 Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~  117 (518)
                      |+..++++++.+  ++.+++.+|.+|..    .+++++|+.+|++++.
T Consensus        97 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~  142 (273)
T 1ouv_A           97 ALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD  142 (273)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence            999999999985  89999999999999    9999999999999993

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.49  E-value=8.1e-07  Score=74.67  Aligned_cols=83  Identities=6%  Similarity=-0.027  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..++..|+|++|+..|.+++...|++..    .           ..+++++|.++..+|++++|+..++++++
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK----A-----------AGGLLKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT----H-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc----c-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            57888999999999999999999999999998732    0           01899999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHh
Q 035535           84 IESSHFKALLCKGKILLS  101 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~  101 (518)
                      .+|++..+...+..+-..
T Consensus       105 ~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A          105 QYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HSTTSHHHHHHHHHHHHH
T ss_pred             HCCCChHHHHHHHHHHHH
Confidence            999998776655544433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.45  E-value=5.6e-07  Score=83.92  Aligned_cols=110  Identities=13%  Similarity=0.020  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHH
Q 035535            2 LMQQLRSKATELLLRE----EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDN   73 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g----~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~   73 (518)
                      ++..+...|..+.. +    ++++|+..|++|++  +.++.                  +++++|.+|..    .+++++
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~------------------a~~~Lg~~y~~g~g~~~d~~~  107 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKS------------------GEIVLARVLVNRQAGATDVAH  107 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHH------------------HHHHHHHHHTCGGGSSCCHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHH------------------HHHHHHHHHHcCCCCccCHHH
Confidence            35677888998888 6    89999999999965  34444                  89999999998    889999


Q ss_pred             HHHHHHHHHhcCC--CchHHHHHHHHHHHh----ccChHHHHHHHHHHHhccccCCcHHHHHHHH
Q 035535           74 ALRDCEQALKIES--SHFKALLCKGKILLS----LNRYSMALDCFKETLVDAQASGSLETVNGFL  132 (518)
Q Consensus        74 Al~~~~~al~l~p--~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l  132 (518)
                      |+..+++|++.+|  .++.+++.+|.+|..    .+++++|+.+|++++..|.++.....+..++
T Consensus       108 A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A          108 AITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF  172 (212)
T ss_dssp             HHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999999999998  569999999999999    8899999999999995565655444444444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.44  E-value=8e-07  Score=74.13  Aligned_cols=90  Identities=9%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|+|++|+..|.+++...|.....           ......+++++|.++..+|++++|+..+++++
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED-----------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh-----------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4567889999999999999999999999999876320           00112389999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccC
Q 035535           83 KIESSHFKALLCKGKILLSLNR  104 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~  104 (518)
                      +++| +...+..++.+...+++
T Consensus       107 ~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A          107 AEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HhCC-CHHHHHHHHHHHHHHHH
Confidence            9999 68888888887766543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=9.3e-07  Score=77.58  Aligned_cols=90  Identities=13%  Similarity=0.047  Sum_probs=77.0

Q ss_pred             hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcC-C-CchH
Q 035535           16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR---DFDNALRDCEQALKIE-S-SHFK   90 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg---~~~~Al~~~~~al~l~-p-~~~k   90 (518)
                      ......+...|.+.+...+.+..                  +.++.|.++.+.+   ++.+++..++.+++.+ | .+..
T Consensus        11 ~~~l~~~~~~y~~e~~~~~~~~~------------------~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd   72 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKAAGSVSKS------------------TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD   72 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHH------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCcHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence            34567788888888876664443                  8999999999988   6779999999999999 7 6799


Q ss_pred             HHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           91 ALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        91 a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      ++|.+|.+++.+++|++|++++++++ ..|++.+
T Consensus        73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999999999 7775543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.41  E-value=7.8e-07  Score=89.42  Aligned_cols=86  Identities=9%  Similarity=0.116  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 035535           19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQALKIESSHFKALLCKGK   97 (518)
Q Consensus        19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al~l~p~~~ka~~~~g~   97 (518)
                      .++|++.++++|.++|.+..                  +|..|+.++..++ .+++++..++.++..+|.+..+|+.++.
T Consensus        70 se~AL~lt~~~L~~nP~~yt------------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w  131 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYT------------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL  131 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCchhHH------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            35666666666666666654                  6666666666666 3666666666666666666666666666


Q ss_pred             HHHhc-c-ChHHHHHHHHHHH-hccccC
Q 035535           98 ILLSL-N-RYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        98 al~~l-g-~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++..+ + +++++++.+.+++ .+|.+.
T Consensus       132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy  159 (349)
T 3q7a_A          132 LLDRISPQDPVSEIEYIHGSLLPDPKNY  159 (349)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHTSSCTTCH
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCCCCH
Confidence            66665 5 6666666666666 554443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.41  E-value=4.4e-07  Score=91.25  Aligned_cols=112  Identities=10%  Similarity=0.040  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhh-h-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHH--------HH
Q 035535            5 QLRSKATELLLR-E-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFD--------NA   74 (518)
Q Consensus         5 ~l~~~Gn~~~~~-g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~--------~A   74 (518)
                      .|..++..+... + +++++++.+.++|..+|.+..                  +|.+|+-+..+++.++        ++
T Consensus       125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~------------------AW~~R~wvl~~l~~~~~~~~~~~~eE  186 (349)
T 3q7a_A          125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH------------------TWAYLHWLYSHFSTLGRISEAQWGSE  186 (349)
T ss_dssp             HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH------------------HHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhccccccchhhHHHH
Confidence            344444444443 3 444555555555555544443                  8999999999999888        99


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhccC-------hHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           75 LRDCEQALKIESSHFKALLCKGKILLSLNR-------YSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        75 l~~~~~al~l~p~~~ka~~~~g~al~~lg~-------~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      ++.++++++.+|.|..||..++.++..+++       ++++++++++++ .+|+|...+..+..++.+
T Consensus       187 Le~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~  254 (349)
T 3q7a_A          187 LDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH  254 (349)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999997       799999999999 888777666555555543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.30  E-value=2.5e-06  Score=90.69  Aligned_cols=103  Identities=12%  Similarity=0.080  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...|...|..+.+.|++++|...|++++.+.|.++.                 .+|.+.+.++.+.|++++|...+++|+
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-----------------LVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            445666777777777777777777777777665421                 167777777777777777777777777


Q ss_pred             hcCCCchHHHHHHHHH-HHhccChHHHHHHHHHHH-hccccC
Q 035535           83 KIESSHFKALLCKGKI-LLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~a-l~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +..|.....+...+.. +...|++++|...|++++ ..|+++
T Consensus       384 ~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~  425 (530)
T 2ooe_A          384 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  425 (530)
T ss_dssp             TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred             hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence            7777666666655554 334777777777777777 555444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.30  E-value=5.1e-06  Score=83.60  Aligned_cols=103  Identities=14%  Similarity=0.068  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|..++..|++++|+..|.+++.+.|....            ......++.++|.++...|++++|+..+++++++
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV------------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4556677777777777777777777777665432            0111235777888888888888888888888776


Q ss_pred             C--------CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           85 E--------SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        85 ~--------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      .        |....++..+|.++...|++++|...+++++ ..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            3        3345567777888888888888888888877 443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.22  E-value=2.5e-06  Score=83.05  Aligned_cols=116  Identities=8%  Similarity=-0.064  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      -....+..+...|+|++|.+.|...+...|.+.                   +++++|.++++.++|++|+..++.++..
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~  164 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-------------------VAWMKAVVYGAAERWTDVIDQVKSAGKW  164 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-------------------HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence            345578889999999999999999987665432                   6899999999999999999999988886


Q ss_pred             C-CCc-hHHHHHHHHHHHhccChHHHHHHHHHHHhccccCC----cHHHHHHHHHHHHHHH
Q 035535           85 E-SSH-FKALLCKGKILLSLNRYSMALDCFKETLVDAQASG----SLETVNGFLEKSKKLE  139 (518)
Q Consensus        85 ~-p~~-~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~----~~~~l~~~l~~~~~~~  139 (518)
                      . |.. ..+++.+|.++..+|++++|+.+|++++..|.+|.    ..-.....+.+..+.+
T Consensus       165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d  225 (282)
T 4f3v_A          165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES  225 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred             CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH
Confidence            4 322 45899999999999999999999999984443233    2233444444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.20  E-value=1e-05  Score=81.38  Aligned_cols=102  Identities=14%  Similarity=0.054  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|..++..|+|++|+..|.+++.+.+......  .+        ....++.++|.++..+|++++|+..+++++.+
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ--LP--------MHEFLVRIRAQLLWAWARLDEAEASARSGIEV  164 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT--ST--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc--Cc--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            466789999999999999999999999886533210  00        11237889999999999999999999999998


Q ss_pred             CCC-----chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           85 ESS-----HFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        85 ~p~-----~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .|.     ...+++.+|.++...|++++|...+++++
T Consensus       165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            764     34688999999999999999999999998

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}

Probab=98.15  E-value=3.7e-06  Score=76.90  Aligned_cols=43  Identities=19%  Similarity=0.219  Sum_probs=38.7

Q ss_pred             ccccccCCCC---CCceEEeeCCEEEEEEcCCCCCCCeEEeecCCC
Q 035535          315 LASFINHSCS---PNARRVHVGDYIIVHASRDVKAGEEITFAYFDM  357 (518)
Q Consensus       315 ~~s~~NHsC~---PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~  357 (518)
                      ...++||+|.   +|+.....++++.++|+|||++||||++.|.+.
T Consensus       131 WmRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~  176 (196)
T 3dal_A          131 WMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRD  176 (196)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHH
T ss_pred             eEEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHH
Confidence            3589999997   699888889999999999999999999999853

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.12  E-value=7e-06  Score=87.26  Aligned_cols=99  Identities=15%  Similarity=0.092  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHh-------hhcHH-------HHHHHHHHHHH-HhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 035535            3 MQQLRSKATELLL-------REEWK-------ESVQVYTQFID-LCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR   67 (518)
Q Consensus         3 a~~l~~~Gn~~~~-------~g~~~-------~Ai~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~   67 (518)
                      .+.|...|..+..       .|+++       +|+..|.+|+. +.|++..                  +|.+++..+.+
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------------------l~~~~~~~~~~  333 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------------------LYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHh
Confidence            4667788888775       68877       99999999997 7888765                  99999999999


Q ss_pred             ccCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535           68 LRDFDNALRDCEQALKIESSHF-KALLCKGKILLSLNRYSMALDCFKETLVDA  119 (518)
Q Consensus        68 lg~~~~Al~~~~~al~l~p~~~-ka~~~~g~al~~lg~~~~A~~~~~~al~~p  119 (518)
                      .|++++|...++++++++|.++ .+|...|.++...|++++|++.|++|+..|
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~  386 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA  386 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            9999999999999999999985 699999999999999999999999999443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.10  E-value=1.7e-05  Score=68.53  Aligned_cols=86  Identities=10%  Similarity=0.033  Sum_probs=66.9

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhc
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDNALRDCEQALKI   84 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~Al~~~~~al~l   84 (518)
                      .|..+...+.+++|+..|++|.+.  .++.                  +++|+|.+|..    .+++++|+..+++|.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~------------------a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGN------------------GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHH------------------HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHH------------------HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence            566666666777788888887765  2222                  78888888888    78888888888888876


Q ss_pred             CCCchHHHHHHHHHHHh----ccChHHHHHHHHHHH
Q 035535           85 ESSHFKALLCKGKILLS----LNRYSMALDCFKETL  116 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al  116 (518)
                        .++.+.+++|.+|..    .+++++|+.+|+++.
T Consensus        91 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  124 (138)
T 1klx_A           91 --NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  124 (138)
T ss_dssp             --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence              578888888888888    788888888888887

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.07  E-value=3.1e-05  Score=74.99  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=78.4

Q ss_pred             cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhcCCCc-hHH
Q 035535           18 EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-----RDFDNALRDCEQALKIESSH-FKA   91 (518)
Q Consensus        18 ~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-----g~~~~Al~~~~~al~l~p~~-~ka   91 (518)
                      ...+|....++||+++|+...                ..+|.-+|..|.+.     |+.++|.+.+++|++++|+. ..+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~----------------GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~  241 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQE----------------GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDH  241 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHH----------------HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHH
T ss_pred             hHHHHHHHHHHHHHhCCCccc----------------CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchH
Confidence            467899999999999999432                12899999999996     99999999999999999975 999


Q ss_pred             HHHHHHHHHh-ccChHHHHHHHHHHH-hcccc-CCc
Q 035535           92 LLCKGKILLS-LNRYSMALDCFKETL-VDAQA-SGS  124 (518)
Q Consensus        92 ~~~~g~al~~-lg~~~~A~~~~~~al-~~p~~-~~~  124 (518)
                      ++..|..+.. .|++++|.+.+++++ ..|.. |..
T Consensus       242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~  277 (301)
T 3u64_A          242 HITYADALCIPLNNRAGFDEALDRALAIDPESVPHN  277 (301)
T ss_dssp             HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence            9999999988 499999999999999 55543 543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.04  E-value=1.9e-05  Score=69.27  Aligned_cols=73  Identities=15%  Similarity=0.143  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHh-hc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 035535            3 MQQLRSKATELLLRE---EWKESVQVYTQFIDLC-QS-QITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD   77 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g---~~~~Ai~~y~~Al~~~-p~-~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~   77 (518)
                      .+...+.|..+.+.+   +.++++..++..++.+ |. ..+                  +++++|.+++++|+|++|+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd------------------~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD------------------YVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH------------------HHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH------------------HHHHHHHHHHHccCHHHHHHH
Confidence            466788899999877   7889999999999987 52 222                  899999999999999999999


Q ss_pred             HHHHHhcCCCchHHHH
Q 035535           78 CEQALKIESSHFKALL   93 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~   93 (518)
                      ++++|+++|+|..|..
T Consensus        94 ~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHCTTCHHHHH
T ss_pred             HHHHHhcCCCCHHHHH
Confidence            9999999999988764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.02  E-value=2.6e-05  Score=63.84  Aligned_cols=68  Identities=16%  Similarity=0.032  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIE-------SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~-------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      -.+.+|..+++.++|..|+.+++.|++..       +..+..+..+|.+++.+|+++.|+..+++++ ..|+++..
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            57799999999999999999999999863       4567889999999999999999999999999 88876544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.00  E-value=4.2e-05  Score=76.94  Aligned_cols=116  Identities=14%  Similarity=0.176  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhh---hcHHHHHHHHHHHHHHhhcccchhhh--------------hhHHHHHHHHH------------HH
Q 035535            5 QLRSKATELLLR---EEWKESVQVYTQFIDLCQSQITETKQ--------------EASQLSKLKKS------------LC   55 (518)
Q Consensus         5 ~l~~~Gn~~~~~---g~~~~Ai~~y~~Al~~~p~~~~~~~~--------------~~~~~~~~~~~------------l~   55 (518)
                      .+.-+|..++.+   .++.+|+.+|++|++++|+.+..-..              .......+...            ..
T Consensus       198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a  277 (372)
T 3ly7_A          198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS  277 (372)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence            455667777654   56799999999999999986542110              00011111110            11


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      .+|.-++.+++..|++++|+..+++|+.++|+ +-+|..+|.++...|++++|++.|.+|+ +.|..
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            23444666777789999999999999999975 6788999999999999999999999999 77643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.97  E-value=2.2e-05  Score=63.11  Aligned_cols=69  Identities=23%  Similarity=0.131  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREE---WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDC   78 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~---~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~   78 (518)
                      +++.+...|..++..++   ..+|...+.+||.++|+++.                  +++.+|..+++.|+|++|+..+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r------------------A~~~lg~~~~~~g~y~~Ai~~w   66 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA------------------ALSLIANDHFISFRFQEAIDTW   66 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence            56788899999986665   79999999999999999987                  9999999999999999999999


Q ss_pred             HHHHhcCCCc
Q 035535           79 EQALKIESSH   88 (518)
Q Consensus        79 ~~al~l~p~~   88 (518)
                      +++++.+|..
T Consensus        67 ~~~l~~~p~~   76 (93)
T 3bee_A           67 VLLLDSNDPN   76 (93)
T ss_dssp             HHHHTCCCTT
T ss_pred             HHHHhhCCCC
Confidence            9999999984

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.94  E-value=3.9e-05  Score=80.60  Aligned_cols=60  Identities=22%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHH-hc
Q 035535           57 ALSNRAEARSR----LRDFDNALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETL-VD  118 (518)
Q Consensus        57 ~~~nra~a~~~----lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al-~~  118 (518)
                      +++++|.+|..    .+++++|+..+++|++.+  ++.+++++|.+|..    .+++++|...|++++ ..
T Consensus       365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            78888888888    788888888888888764  67888888888887    788888888888888 55

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.87  E-value=5.3e-05  Score=79.10  Aligned_cols=107  Identities=7%  Similarity=-0.037  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHhhh---cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc----cCHHHHHH
Q 035535            4 QQLRSKATELLLRE---EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL----RDFDNALR   76 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g---~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l----g~~~~Al~   76 (518)
                      ..+...|..+...|   ++++|+..|+++++..|..+.                  .++++|.+|...    +++++|+.
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~------------------~~~~Lg~~y~~g~~~~~d~~~A~~  238 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ------------------RVDSVARVLGDATLGTPDEKTAQA  238 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH------------------HHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCCCCCHHHHHH
Confidence            35678899999999   999999999999998877654                  678999999776    79999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHH-H--HhccChHHHHHHHHHHHhccccCCcHHHHHHHH
Q 035535           77 DCEQALKIESSHFKALLCKGKI-L--LSLNRYSMALDCFKETLVDAQASGSLETVNGFL  132 (518)
Q Consensus        77 ~~~~al~l~p~~~ka~~~~g~a-l--~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l  132 (518)
                      .++++.   |+++.+++.+|.+ +  ...+++++|+..|+++... .++.....+..++
T Consensus       239 ~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y  293 (452)
T 3e4b_A          239 LLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-DQPRAELLLGKLY  293 (452)
T ss_dssp             HHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred             HHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence            999998   8999999999999 4  4789999999999999832 2333334444433

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}

Probab=97.84  E-value=1.3e-05  Score=70.56  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             ccccccCCCCC---CceEEeeCCEEEEEEcCCCCCCCeEEeecCCCCC
Q 035535          315 LASFINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAYFDMLL  359 (518)
Q Consensus       315 ~~s~~NHsC~P---N~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~  359 (518)
                      .+.++||+|.+   |+.....++++.++|+|||++||||++.|.+.+.
T Consensus        97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y~  144 (151)
T 3db5_A           97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYA  144 (151)
T ss_dssp             GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC---
T ss_pred             ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHHH
Confidence            35899999975   9998888999999999999999999999998653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.79  E-value=0.00017  Score=75.70  Aligned_cols=94  Identities=7%  Similarity=-0.036  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHH
Q 035535            2 LMQQLRSKATELLL----REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDN   73 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~----~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~   73 (518)
                      +++.+...|..++.    .+++++|+..|+++++.  .++.                  +++++|.+|..    .+++++
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~------------------a~~~Lg~~y~~g~g~~~~~~~   97 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTP------------------AEYVLGLRYMNGEGVPQDYAQ   97 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH------------------HHHHHHHHHHHTSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHH------------------HHHHHHHHHHcCCCCCCCHHH
Confidence            45677888999998    89999999999999875  3333                  89999999999    999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHHh
Q 035535           74 ALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETLV  117 (518)
Q Consensus        74 Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~  117 (518)
                      |+..++++.+.  .++.+++.+|.+|..    .+++++|+..|+++..
T Consensus        98 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A           98 AVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            99999999876  478999999999998    8899999999999983

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.00028  Score=72.04  Aligned_cols=101  Identities=7%  Similarity=0.052  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+.+.|..++..|+|++|++.|.+++...+.....            .....++.+++.++...|++++|+..+++++.
T Consensus        56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  123 (434)
T 4b4t_Q           56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS------------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE  123 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH------------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            457889999999999999999999999987764320            01122566677777777777777777777776


Q ss_pred             cC------CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 IE------SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l~------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +.      +...+.+.++|.++...|+|++|+..+++++
T Consensus       124 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q          124 FAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             HHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            52      3346677777777777788888877777776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.74  E-value=9.4e-05  Score=77.15  Aligned_cols=102  Identities=13%  Similarity=0.091  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhh----hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHH-H--HhccCHHHHHHH
Q 035535            5 QLRSKATELLLR----EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEA-R--SRLRDFDNALRD   77 (518)
Q Consensus         5 ~l~~~Gn~~~~~----g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a-~--~~lg~~~~Al~~   77 (518)
                      .+.+.|..+...    +++++|+..|+++.   |.++.                  +++++|.+ +  ...+++++|+..
T Consensus       215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~------------------a~~~Lg~~~~~~~~~~d~~~A~~~  273 (452)
T 3e4b_A          215 RVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA------------------SWVSLAQLLYDFPELGDVEQMMKY  273 (452)
T ss_dssp             HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH------------------HHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH------------------HHHHHHHHHHhCCCCCCHHHHHHH
Confidence            346788887655    69999999999998   77766                  89999999 4  578999999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHhcc-----ChHHHHHHHHHHHhccccCCcHHHHHHHH
Q 035535           78 CEQALKIESSHFKALLCKGKILLSLN-----RYSMALDCFKETLVDAQASGSLETVNGFL  132 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~~~g~al~~lg-----~~~~A~~~~~~al~~p~~~~~~~~l~~~l  132 (518)
                      ++++.+.+  ++.+++.+|.+|. .|     ++++|+.+|+++.  |.++.....+..++
T Consensus       274 ~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          274 LDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHH
T ss_pred             HHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence            99999664  8999999999998 55     9999999999998  66665555555444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.73  E-value=0.00026  Score=59.82  Aligned_cols=101  Identities=14%  Similarity=0.075  Sum_probs=78.9

Q ss_pred             HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH---HHHHHHHHHhcC-C-C
Q 035535           13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDN---ALRDCEQALKIE-S-S   87 (518)
Q Consensus        13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~---Al~~~~~al~l~-p-~   87 (518)
                      -........+...|.+++...+....                  +.+|.|-++.+..+...   ++..++..+.-+ | .
T Consensus        11 ~~~~~~l~~~~~~y~~e~~~~~~s~~------------------~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~   72 (126)
T 1nzn_A           11 LVSVEDLLKFEKKFQSEKAAGSVSKS------------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE   72 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCHH------------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccCCCcHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch
Confidence            34455667778888888775543333                  88999999999887776   999999999987 6 5


Q ss_pred             chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           88 HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      .-..+|.+|..++.+|+|++|+++++.+| ..|++.+. ..+..++
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA-~~Lk~~i  117 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA-KELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH-HHHHHHH
Confidence            77899999999999999999999999999 77765543 3344433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.71  E-value=0.00021  Score=82.55  Aligned_cols=90  Identities=12%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ...|.+.|.++.+.|+|++|++.|.+|     ++++                  .|.+.+.++.++|+|++|++.+..|.
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~s------------------ay~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPS------------------SYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456888888888889999999998776     3333                  67777888888888888888877766


Q ss_pred             hcCCC---------------------------chHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535           83 KIESS---------------------------HFKALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        83 ~l~p~---------------------------~~ka~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      +.+++                           +...++..|..+...|+|++|...|.++
T Consensus      1162 k~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1162 KKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             hhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence            54422                           3345667777777777777777777765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.67  E-value=0.00044  Score=61.03  Aligned_cols=102  Identities=11%  Similarity=0.077  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+++....++..|.|+.|+-.++.++.+..+++.  ..+|.       ..+.++...|.+++..++|..|...|++||++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~--~~sp~-------~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPE--LFSPP-------QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTT--SSCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcc--cccHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999988755443  11222       22448999999999999999999999999765


Q ss_pred             C------C-------------------CchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535           85 E------S-------------------SHFKALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        85 ~------p-------------------~~~ka~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      .      |                   ......|+.|.||..++++++|+..++..
T Consensus        93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            2      1                   11267899999999999999999988754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.66  E-value=0.00016  Score=83.35  Aligned_cols=95  Identities=9%  Similarity=0.148  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|+.++..|+|++|+..|++|        .                  .|..+|.++.++|+|++|++.+.+|..
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~------------------ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------S------------------NFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------h------------------HHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence            46778999999999999999999996        2                  688999999999999999999999944


Q ss_pred             cCC-------------------------CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           84 IES-------------------------SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        84 l~p-------------------------~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      .++                         .++.-+..++..|...|.|++|+..|++++ +++.+...
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence            332                         123334445555556666666666666666 44433333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.62  E-value=0.00029  Score=60.60  Aligned_cols=93  Identities=8%  Similarity=0.023  Sum_probs=75.8

Q ss_pred             hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      .+++++|+..|+++.+..  ++.                  +.  +|.+|...+.+++|+..+++|.+.  .++.+++.+
T Consensus         8 ~~d~~~A~~~~~~aa~~g--~~~------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L   63 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN--EMF------------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL   63 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTT------------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCC--CHh------------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH
Confidence            468999999999999875  222                  45  899999999999999999999988  689999999


Q ss_pred             HHHHHh----ccChHHHHHHHHHHHhccccCCcHHHHHHHHH
Q 035535           96 GKILLS----LNRYSMALDCFKETLVDAQASGSLETVNGFLE  133 (518)
Q Consensus        96 g~al~~----lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~  133 (518)
                      |.+|..    .+++++|+..|+++... .++.....+..++.
T Consensus        64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~  104 (138)
T 1klx_A           64 GDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence            999999    89999999999999943 23444444444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.00033  Score=71.50  Aligned_cols=105  Identities=9%  Similarity=0.034  Sum_probs=84.5

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI---   84 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l---   84 (518)
                      ..|..+...|++++|+..|++++...+....            ......++.++|.++...|+|.+|+..+++++..   
T Consensus       100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~  167 (434)
T 4b4t_Q          100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREKR------------VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK  167 (434)
T ss_dssp             HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC------------CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc------------cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence            3456666788999999999999998765432            0112338999999999999999999999999875   


Q ss_pred             ---CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           85 ---ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        85 ---~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                         .|....++...|.+|..+|+|++|...|++++ ..+..+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  211 (434)
T 4b4t_Q          168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP  211 (434)
T ss_dssp             SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence               34557899999999999999999999999999 55544443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.60  E-value=0.00035  Score=68.79  Aligned_cols=97  Identities=13%  Similarity=0.019  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhh--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQ--SQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p--~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      .+...|..+...|++++|+..+.++|...|  ....                  ++.-.+.+++++|+++.|.+.++++.
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le------------------a~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE------------------LLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            346789999999999999999999988776  3333                  88899999999999999999999999


Q ss_pred             hcCCC----chHHHHHH--HHHHHhcc--ChHHHHHHHHHHH-hcc
Q 035535           83 KIESS----HFKALLCK--GKILLSLN--RYSMALDCFKETL-VDA  119 (518)
Q Consensus        83 ~l~p~----~~ka~~~~--g~al~~lg--~~~~A~~~~~~al-~~p  119 (518)
                      +.+|+    +-..+..+  |.+.+..|  ++.+|...|+++. ..|
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence            99993    23334444  54466666  9999999999988 444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.55  E-value=7e-05  Score=77.23  Aligned_cols=102  Identities=12%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..|...|+.++..|+|++|+..|+++        +                  .|.++|.|+.++|+|++|++.+.+|  
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~------------------n~~~LA~~L~~Lg~yq~AVea~~KA--  174 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------S------------------NFGRLASTLVHLGEYQAAVDGARKA--  174 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------T------------------CHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------h------------------hHHHHHHHHHHhccHHHHHHHHHHc--
Confidence            46788999999999999999999977        2                  6889999999999999999999999  


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                         .++++|-....++...|+|+.|..+.......|++   ...+..++++.++.+
T Consensus       175 ---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~---l~~lv~~Yek~G~~e  224 (449)
T 1b89_A          175 ---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYFE  224 (449)
T ss_dssp             ---TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH---HHHHHHHHHHTTCHH
T ss_pred             ---CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh---HHHHHHHHHHCCCHH
Confidence               47888888899999999999998777753344432   344445555444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.24  E-value=0.0023  Score=62.88  Aligned_cols=102  Identities=12%  Similarity=0.070  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHhcc--CHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEA--RSRLR--DFDNALRD   77 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a--~~~lg--~~~~Al~~   77 (518)
                      ..+.....+..+++.|+.+.|...+.+..+.+|+...     .++         ....+++.+  .+..|  ++.+|+..
T Consensus       135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~-----~~d---------~~l~~Laea~v~l~~g~~~~q~A~~~  200 (310)
T 3mv2_B          135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS-----GDN---------EMILNLAESYIKFATNKETATSNFYY  200 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH-----HHH---------HHHHHHHHHHHHHHHTCSTTTHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc-----cch---------HHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            3455667788899999999999999999888873100     000         056677766  55556  99999999


Q ss_pred             HHHHHhcCCC--chHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           78 CEQALKIESS--HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        78 ~~~al~l~p~--~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      ++++.+..|+  ....++.   ++..+|+|++|.+.++.++ ..|+
T Consensus       201 f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          201 YEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             HHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence            9999888887  3445555   8999999999999999777 5443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.21  E-value=0.0047  Score=62.94  Aligned_cols=113  Identities=11%  Similarity=0.019  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---hhhH-HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---QEAS-QLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE   79 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---~~~~-~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~   79 (518)
                      +.+...|......|+.++|+..+.+|+.+.....-++.   .+.. ....+......+...++.+++..|++.+|+..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45566677777789999999999999998654432211   1222 2234555566678889999999999999999999


Q ss_pred             HHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           80 QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        80 ~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      +++..+|-+..+|..+-.+|+..|+..+|++.|+++.
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999876

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}

Probab=97.16  E-value=0.00025  Score=62.30  Aligned_cols=42  Identities=14%  Similarity=0.219  Sum_probs=38.5

Q ss_pred             cccccCCCC---CCceEEeeCCEEEEEEcCCCCCCCeEEeecCCC
Q 035535          316 ASFINHSCS---PNARRVHVGDYIIVHASRDVKAGEEITFAYFDM  357 (518)
Q Consensus       316 ~s~~NHsC~---PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~  357 (518)
                      +.++||+|.   +|+.....++++.++|+|+|++||||++.|.+.
T Consensus        97 mr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~  141 (152)
T 3ihx_A           97 MMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAAS  141 (152)
T ss_dssp             GGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHH
T ss_pred             eeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHH
Confidence            589999998   799988889999999999999999999999864

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.13  E-value=0.00084  Score=69.21  Aligned_cols=102  Identities=10%  Similarity=0.051  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+..+|+.+++.|+|++|++.|.+|.     ++.                  .|-....++...|+|+.|...... +
T Consensus       148 a~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~------------------~Wk~v~~aCv~~~ef~lA~~~~l~-L  203 (449)
T 1b89_A          148 VSNFGRLASTLVHLGEYQAAVDGARKAN-----STR------------------TWKEVCFACVDGKEFRLAQMCGLH-I  203 (449)
T ss_dssp             TTCHHHHHHHHHTTTCHHHHHHHHHHHT-----CHH------------------HHHHHHHHHHHTTCHHHHHHTTTT-T
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHHHHcC-----Cch------------------hHHHHHHHHHHcCcHHHHHHHHHH-H
Confidence            3457789999999999999999999992     222                  788889999999999999665553 4


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      ..+|++   +..+...|...|++++|+..|++++ +++.+.+....+..+
T Consensus       204 ~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il  250 (449)
T 1b89_A          204 VVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  250 (449)
T ss_dssp             TTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            455555   5568888999999999999999999 665444444444333

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}

Probab=97.03  E-value=0.00042  Score=64.79  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=41.1

Q ss_pred             cccccCCCC---CCceEEeeCCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCC
Q 035535          316 ASFINHSCS---PNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCK  381 (518)
Q Consensus       316 ~s~~NHsC~---PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~  381 (518)
                      +.++||+|.   +|+.....++++.++|+|||++||||++.|.+.++         +..+-.|.++.|.
T Consensus       141 mRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y~---------~~l~~~~~~~~~~  200 (237)
T 3ray_A          141 MRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYM---------KRLHSMSQETIHR  200 (237)
T ss_dssp             GGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHHH---------HHHCC--------
T ss_pred             eeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHHH---------HHhcccccchhcc
Confidence            589999996   69888888999999999999999999999987532         2344567888884

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.91  E-value=0.0027  Score=53.54  Aligned_cols=77  Identities=13%  Similarity=0.060  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHhhhcHHH---HHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535            4 QQLRSKATELLLREEWKE---SVQVYTQFIDLC-QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE   79 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~---Ai~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~   79 (518)
                      +.-.+.|..+.+..+..+   +|..++..+... |...                 -.+++.+|.+++++|+|.+|+..++
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~-----------------Rd~lY~LAvg~yklg~Y~~A~~~~~   98 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-----------------RDYVFYLAVGNYRLKEYEKALKYVR   98 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH-----------------HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            344555666665554444   777777766543 2110                 1189999999999999999999999


Q ss_pred             HHHhcCCCchHHHHHHHH
Q 035535           80 QALKIESSHFKALLCKGK   97 (518)
Q Consensus        80 ~al~l~p~~~ka~~~~g~   97 (518)
                      ..|+++|+|.+|.--+..
T Consensus        99 ~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           99 GLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHCTTCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHH
Confidence            999999999888655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.68  E-value=0.014  Score=49.45  Aligned_cols=76  Identities=16%  Similarity=0.059  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhccC---HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           57 ALSNRAEARSRLRD---FDNALRDCEQALKIESS-HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        57 ~~~nra~a~~~lg~---~~~Al~~~~~al~l~p~-~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      .-+|.|-++.+..+   ..+++..++..++.+|. .-..+|.+|.+++.+|+|++|+++.+.++ ..|+|.+. ..+..+
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA-~~Lk~~  120 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV-GALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH-HHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH-HHHHHH
Confidence            77888888888765   45788889999988884 46789999999999999999999999999 77765543 344444


Q ss_pred             HH
Q 035535          132 LE  133 (518)
Q Consensus       132 l~  133 (518)
                      ++
T Consensus       121 Ie  122 (134)
T 3o48_A          121 VE  122 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.57  E-value=0.014  Score=49.41  Aligned_cols=43  Identities=14%  Similarity=0.072  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKI   98 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~a   98 (518)
                      -+++.+|.+++++|+|++|...++.+|+++|+|.+|.--+..+
T Consensus        79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4889999999999999999999999999999998876544433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.57  E-value=0.025  Score=54.69  Aligned_cols=61  Identities=13%  Similarity=-0.028  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhc-----cChHHHHHHHHHHH-hcccc-CCcHHHHHH
Q 035535           70 DFDNALRDCEQALKIESS--HFKALLCKGKILLSL-----NRYSMALDCFKETL-VDAQA-SGSLETVNG  130 (518)
Q Consensus        70 ~~~~Al~~~~~al~l~p~--~~ka~~~~g~al~~l-----g~~~~A~~~~~~al-~~p~~-~~~~~~l~~  130 (518)
                      ....|...+++|+++||+  +..+|..+|..|..+     |+.++|.++|++|+ +.|+. ....-...+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~  247 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYAD  247 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence            468899999999999999  677999999999996     99999999999999 88754 433333333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.46  E-value=0.0049  Score=61.88  Aligned_cols=73  Identities=16%  Similarity=0.016  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|..++..|++++|+..+++|+.++|+ ..                  +|.-+|.++.-.|++++|++.+++|+.+
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~------------------a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WL------------------NYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3445666777889999999999999999864 22                  7888999999999999999999999999


Q ss_pred             CCCchHHHHHHH
Q 035535           85 ESSHFKALLCKG   96 (518)
Q Consensus        85 ~p~~~ka~~~~g   96 (518)
                      +|.....++..+
T Consensus       340 ~P~~~t~~~~~~  351 (372)
T 3ly7_A          340 RPGANTLYWIEN  351 (372)
T ss_dssp             SCSHHHHHHHHH
T ss_pred             CCCcChHHHHhC
Confidence            998764444333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.40  E-value=0.023  Score=48.70  Aligned_cols=76  Identities=16%  Similarity=0.076  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhccCH---HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           57 ALSNRAEARSRLRDF---DNALRDCEQALKIESS-HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        57 ~~~nra~a~~~lg~~---~~Al~~~~~al~l~p~-~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      ..+|.|-++.+..+.   .+++..++..+..+|. .-..+|.+|..++.+|+|++|+++.+..| ..|+|.+. ..+..+
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA-~~Lk~~  119 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV-GALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH-HHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH-HHHHHH
Confidence            788999999887754   5799999999998884 56789999999999999999999999999 77755443 334444


Q ss_pred             HH
Q 035535          132 LE  133 (518)
Q Consensus       132 l~  133 (518)
                      ++
T Consensus       120 Ie  121 (144)
T 1y8m_A          120 VE  121 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.39  E-value=0.064  Score=46.38  Aligned_cols=119  Identities=14%  Similarity=0.016  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhhhcH------HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 035535            3 MQQLRSKATELLLREEW------KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR   76 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~------~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~   76 (518)
                      .+.|..-...+-+.|+.      +.-++.|++|+...|....          +..+..+-+|.+.|.- ..+++.++|.+
T Consensus        13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~----------~~wrrYI~LWIrYA~~-~ei~D~d~aR~   81 (161)
T 4h7y_A           13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY----------GQNESFARIQVRFAEL-KAIQEPDDARD   81 (161)
T ss_dssp             HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG----------TTCHHHHHHHHHHHHH-HHHHCGGGCHH
T ss_pred             HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc----------ccHHHHHHHHHHHHHH-HHhcCHHHHHH
Confidence            45666666666677888      8889999999998776421          1223344467777754 67799999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           77 DCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        77 ~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      .|+.++++....++.|...|.--.+.|+...|.+.+.+|+ .-|   ...+.+...++.+
T Consensus        82 vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~---k~~~~le~a~~nl  138 (161)
T 4h7y_A           82 YFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA---VPLEMLEIALRNL  138 (161)
T ss_dssp             HHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---BCHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC---CcHHHHHHHHHhh
Confidence            9999999988899999999999999999999999999999 554   3345555555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.17  E-value=0.025  Score=48.46  Aligned_cols=40  Identities=15%  Similarity=0.060  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      .+++.+|.+++++|+|.+|..+++..|+++|+|.+|.--+
T Consensus        78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            3789999999999999999999999999999998876544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.05  E-value=0.023  Score=50.04  Aligned_cols=94  Identities=16%  Similarity=0.098  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITET---------KQEASQLSKLKKSLCLALSNRAEARSRLRDFDN   73 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~---------~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~   73 (518)
                      ++.+.-.|+.+|.+++|..|...|++||.....-...+         +..|... .+ ..-+.+.+..|.||.+++++.+
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~-~~-~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQ-CL-PSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------------CC-CCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccc-cc-cchHHHHHHHHHHHHHHCCHHH
Confidence            56778899999999999999999999998754221100         0011000 00 0001278899999999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHH
Q 035535           74 ALRDCEQALKIESSHFKALLCKGKIL   99 (518)
Q Consensus        74 Al~~~~~al~l~p~~~ka~~~~g~al   99 (518)
                      |+...+.. -..-..++.-..+|+.|
T Consensus       141 Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            99876543 22224567666666654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.91  E-value=0.15  Score=55.78  Aligned_cols=98  Identities=3%  Similarity=-0.156  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHH-HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESV-QVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai-~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ..-|...+.-+...|+.++|+ ..|.+|+..+|.+..                  +|...+....+.|++++|.+.++++
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~------------------Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV------------------LAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345677777777888888997 999999999987654                  7889999999999999999999999


Q ss_pred             Hhc-----------CCC-----------chHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535           82 LKI-----------ESS-----------HFKALLCKGKILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        82 l~l-----------~p~-----------~~ka~~~~g~al~~lg~~~~A~~~~~~al~~  118 (518)
                      +..           .|+           ...+|...+......|..+.|...|.+|+..
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            975           242           4567888888888999999999999999954

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.086  Score=57.94  Aligned_cols=59  Identities=14%  Similarity=0.153  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      ++.--+.-++..|+|+-|++.+++|+.+-|.....|+.++.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44445666778899999999999999999999999999999999999999999877765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.17  E-value=0.44  Score=52.00  Aligned_cols=97  Identities=11%  Similarity=-0.004  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHH
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQ-ITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCEQAL   82 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~-~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~~al   82 (518)
                      .|...++...+.|+.+.|...|.+|+...|.. ..                  +|...|..-.+.++ ++.|...+++++
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~------------------lyi~~A~lE~~~~~d~e~Ar~ife~~L  497 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD------------------IYLENAYIEYHISKDTKTACKVLELGL  497 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH------------------HHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH------------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            35555666667889999999999999873332 22                  66666777667654 999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      +..|+++..|...+......|+.+.|...|++++ ..|
T Consensus       498 k~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          498 KYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            9999999988888888889999999999999999 554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.19  E-value=0.74  Score=46.59  Aligned_cols=98  Identities=12%  Similarity=0.048  Sum_probs=78.3

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--
Q 035535            8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE--   85 (518)
Q Consensus         8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~--   85 (518)
                      .+|..++..|+|.+|+..+++.+.......+            ...+..++..-...|..++++.++...+.+|....  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd------------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a  171 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD------------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA  171 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC------------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc------------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence            5799999999999999999999987755221            12344488999999999999999999999887543  


Q ss_pred             ----CC-chHHHHHHHHHHH-hccChHHHHHHHHHHHh
Q 035535           86 ----SS-HFKALLCKGKILL-SLNRYSMALDCFKETLV  117 (518)
Q Consensus        86 ----p~-~~ka~~~~g~al~-~lg~~~~A~~~~~~al~  117 (518)
                          |. .+.....-|..+. ..++|..|..+|-++..
T Consensus       172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence                21 2344566788899 89999999999999873

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.68  E-value=1.9  Score=44.87  Aligned_cols=116  Identities=11%  Similarity=0.005  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh--hhh---HHH-HHH----------------HHHHHHHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK--QEA---SQL-SKL----------------KKSLCLALSNR   61 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~--~~~---~~~-~~~----------------~~~l~~~~~nr   61 (518)
                      .-|...+.-+...|+.++|...|.+|+.. |.+..--.  ...   ++. .++                ......+|.+.
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence            45777777788899999999999999999 87532000  000   000 000                01122467777


Q ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-ChHHHHHHHHHHH-hcccc
Q 035535           62 AEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN-RYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        62 a~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg-~~~~A~~~~~~al-~~p~~  121 (518)
                      +....+.++.+.|...+++| ...+.....|...|..-+..+ +++.|...|+.++ ..|+.
T Consensus       293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence            77777888999999999999 443345567776777777666 5999999999999 55543

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=92.15  E-value=0.88  Score=44.32  Aligned_cols=112  Identities=12%  Similarity=-0.011  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL--   82 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al--   82 (518)
                      ...+.|-.++..|+|++|+..|+.+|...|-....   +.++..+....+.++.--.-...+.+.+-+-.-++-.+.+  
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lEL  192 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVD---DAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLEL  192 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            34568999999999999999999999988755431   2223333334443333332222233321110001222222  


Q ss_pred             -------hcCCCchHHHHHHHH-HHHhccChHHHHHHHHHHH-hcc
Q 035535           83 -------KIESSHFKALLCKGK-ILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        83 -------~l~p~~~ka~~~~g~-al~~lg~~~~A~~~~~~al-~~p  119 (518)
                             ++.|.|.-.-++.|. ..++.++|..|....++.+ ..|
T Consensus       193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p  238 (325)
T 3mv2_A          193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS  238 (325)
T ss_dssp             HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence                   346666555455554 4578899999999999998 544

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.02  E-value=1.2  Score=43.33  Aligned_cols=112  Identities=12%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-------HHHHHH
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-------FDNALR   76 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-------~~~Al~   76 (518)
                      ..-.+.|-.++..|+|++|+..|+.+|...|-....   +.++..+....+.++.--.-...+.+.+       .++...
T Consensus       103 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR  179 (320)
T 3mkr_B          103 IQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD---NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKR  179 (320)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHH
Confidence            344578999999999999999999999988765431   2223333444444443333333333321       122222


Q ss_pred             HHHHHH-----hcCCCchHHHHHHHH-HHHhccChHHHHHHHHHHHhc
Q 035535           77 DCEQAL-----KIESSHFKALLCKGK-ILLSLNRYSMALDCFKETLVD  118 (518)
Q Consensus        77 ~~~~al-----~l~p~~~ka~~~~g~-al~~lg~~~~A~~~~~~al~~  118 (518)
                      .++-|-     ++.|.|.-.-++.|. ..+..++|..|...-++.|..
T Consensus       180 ~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel  227 (320)
T 3mkr_B          180 ICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLEL  227 (320)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            222221     346666555555554 457889999999999999843

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.87  E-value=0.67  Score=44.07  Aligned_cols=70  Identities=9%  Similarity=-0.001  Sum_probs=58.8

Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           63 EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        63 ~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      ..+++.|+.++|++.+...++-+|.+.+....+.+.|.-.|+|+.|.+.++.+. ++|+.......+..++
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI   75 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV   75 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999 7775544433334433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.82  E-value=0.77  Score=47.04  Aligned_cols=102  Identities=8%  Similarity=-0.070  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+..+|..+++.|++++|+..|.++.........               ....+.+...+++..++|..+...+.++..+
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            3567899999999999999999999887654322               1227888888899999999999999999655


Q ss_pred             ---CCCc---hHHHHHHHHHHHhccChHHHHHHHHHHHhcccc
Q 035535           85 ---ESSH---FKALLCKGKILLSLNRYSMALDCFKETLVDAQA  121 (518)
Q Consensus        85 ---~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~  121 (518)
                         .++.   .+.....|.++...++|.+|...|..+...++.
T Consensus       198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence               2221   234556788888999999999999988844433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.73  E-value=0.53  Score=49.20  Aligned_cols=79  Identities=10%  Similarity=0.003  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      ++.++|........+..|..+|.+|+.+.|++...|..+|.+....|++-+|+-+|-+++ .....+....++..++.+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            566777777777889999999999999999999999999999999999999999999999 4433566667777766553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.38  E-value=0.54  Score=51.61  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      -|..++.-+..+|+|+-|+..-++|+...|..-.                  .|+.+|.||.++|+|+.|+-.++-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~------------------tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFE------------------SWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH------------------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3555677778899999999999999999999876                  9999999999999999999655444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.34  E-value=2.3  Score=44.42  Aligned_cols=92  Identities=10%  Similarity=0.016  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLC--QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +...-..+.+.|++++|.+.|.+.....  |+.                   ..|..+-.+|.+.|+.++|.+.+++..+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-------------------RSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-------------------ceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3344556667777777777777665431  221                   1455666677777777777777777765


Q ss_pred             cC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 IE-SSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      .. ..+...|..+-.+|...|+.++|.+.|++..
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr  202 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR  202 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            43 1255667777777777777777777777765

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.85  E-value=1.4  Score=45.89  Aligned_cols=78  Identities=14%  Similarity=-0.000  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      +...|...--+..+..|..+|.+|+.+.|....                  .|..+|......|+.-+|+-+|-+++...
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~------------------~~nqLavla~~~~~~l~a~y~y~rsl~~~  216 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------------------PYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc------------------hHHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence            456788888888999999999999999999987                  89999999999999999999999999998


Q ss_pred             CCchHHHHHHHHHHHh
Q 035535           86 SSHFKALLCKGKILLS  101 (518)
Q Consensus        86 p~~~ka~~~~g~al~~  101 (518)
                      ..++.|.-++...+-.
T Consensus       217 ~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          217 FPFPAASTNLQKALSK  232 (497)
T ss_dssp             BCCHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHH
Confidence            8899999988888764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.56  E-value=6  Score=40.56  Aligned_cols=104  Identities=11%  Similarity=-0.012  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK-   83 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~-   83 (518)
                      --...+..++..|+|.+|.........-.-...            ....+..++.--...++..++|..|...+.++.. 
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~------------~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSM------------EMSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            345679999999999999999988764321111            1123344777888899999999999999998742 


Q ss_pred             ---cC-CCc--hHHHHHHHHHHHhccChHHHHHHHHHHHhccc
Q 035535           84 ---IE-SSH--FKALLCKGKILLSLNRYSMALDCFKETLVDAQ  120 (518)
Q Consensus        84 ---l~-p~~--~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~  120 (518)
                         .. |..  ...+...|..+...++|.+|..+|..+...|.
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~  249 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA  249 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence               22 222  23456788899999999999999999985443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.36  E-value=2.3  Score=40.35  Aligned_cols=64  Identities=14%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch
Q 035535           10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF   89 (518)
Q Consensus        10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~   89 (518)
                      ...+++.|+.++|++.....|+..|.++.                  ...-+.+.+.-.|+|+.|...++.+.+++|...
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~------------------~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDAS------------------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            35688999999999999999999999877                  666677778889999999999999999999876


Q ss_pred             HH
Q 035535           90 KA   91 (518)
Q Consensus        90 ka   91 (518)
                      ..
T Consensus        66 ~~   67 (273)
T 1zbp_A           66 PG   67 (273)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=86.85  E-value=5.8  Score=34.90  Aligned_cols=63  Identities=10%  Similarity=0.144  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHH--hc---------------CCCchHHH-HHHHHHHHhccChHHHHHHHHHHH-h
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQAL--KI---------------ESSHFKAL-LCKGKILLSLNRYSMALDCFKETL-V  117 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al--~l---------------~p~~~ka~-~~~g~al~~lg~~~~A~~~~~~al-~  117 (518)
                      +.+-.+.|+.++++|..|+...+..+  ++               ||.+..-+ .-+|..+..+|+-++|+.+|.... .
T Consensus        64 s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A           64 SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            56677889999999999999999998  22               33444433 457888999999999999998877 4


Q ss_pred             cc
Q 035535          118 DA  119 (518)
Q Consensus       118 ~p  119 (518)
                      .|
T Consensus       144 ~~  145 (242)
T 3kae_A          144 SF  145 (242)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=85.59  E-value=5.2  Score=41.67  Aligned_cols=82  Identities=10%  Similarity=0.000  Sum_probs=65.6

Q ss_pred             hhcHHHHHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCchHHH
Q 035535           16 REEWKESVQVYTQFIDLC--QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE-SSHFKAL   92 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~-p~~~ka~   92 (518)
                      .++.++|.+.|.+.....  |+.                   ..|..+-.++.+.|++++|++.+++..+.. ..+...|
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~-------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty  143 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNE-------------------ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY  143 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCH-------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCH-------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence            345777888887765532  221                   168888899999999999999999988753 2367888


Q ss_pred             HHHHHHHHhccChHHHHHHHHHHH
Q 035535           93 LCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        93 ~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ..+-.+|...|+.++|.+.|++..
T Consensus       144 n~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A          144 GPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHH
Confidence            889999999999999999999987

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=85.43  E-value=5.7  Score=35.16  Aligned_cols=21  Identities=14%  Similarity=-0.192  Sum_probs=13.6

Q ss_pred             HHHHHhccChHHHHHHHHHHH
Q 035535           96 GKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        96 g~al~~lg~~~~A~~~~~~al  116 (518)
                      ..+++.+|+++++++.|.+.-
T Consensus        96 f~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           96 LLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHCC
Confidence            345667777777777776543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=85.09  E-value=3.1  Score=43.28  Aligned_cols=91  Identities=9%  Similarity=-0.096  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhc
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQALKI   84 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al~l   84 (518)
                      |...+....+.++.+.|...|.+|  ..|.. .     ..           .|...|..-+..+ +++.|...++.+++.
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A--~~~~~-~-----~~-----------v~i~~A~lE~~~~~d~~~ar~ife~al~~  349 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL--GNEGV-G-----PH-----------VFIYCAFIEYYATGSRATPYNIFSSGLLK  349 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH--TTSCC-C-----HH-----------HHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh--hCCCC-C-----hH-----------HHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            444555555678899999999999  33431 1     11           5666666666666 599999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKET  115 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~a  115 (518)
                      -|+.+..+...+.....+|+.+.|...|+++
T Consensus       350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8988888777788788899999999999887

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=82.11  E-value=3.8  Score=41.19  Aligned_cols=62  Identities=8%  Similarity=-0.102  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...+..+...|++.+|+....+++..+|-+..                  +|..+-.++.+.|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~------------------~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREP------------------LWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455677788999999999999999999998765                  888888999999999999998887643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.61  E-value=6.2  Score=42.97  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .|.++|..+++.++++.|...|.++
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            5666666666666666666666554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=80.60  E-value=4.9  Score=46.47  Aligned_cols=126  Identities=11%  Similarity=-0.030  Sum_probs=81.2

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHh-hcccchhh-hhhHHH---HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLC-QSQITETK-QEASQL---SKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~-p~~~~~~~-~~~~~~---~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .-+|..++..|++++|.++|.+|-.-. ........ .....+   ......+...|+.....+.+.+.++.+++.+..|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            568999999999999999999874211 11100000 000000   0001112346788888888999999999999999


Q ss_pred             HhcCCC-ch--H--HHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHH
Q 035535           82 LKIESS-HF--K--ALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        82 l~l~p~-~~--k--a~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~  135 (518)
                      ++..+. +.  +  .|.+.-+.+..+++|++|-..+.   ..|+..--..-++.++.++
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~---~~pd~~~r~~cLr~LV~~l  981 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM---VLSTTPLKKSCLLDFVNQL  981 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH---HHHHSSSCHHHHHHHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH---hCCCHHHHHHHHHHHHHHH
Confidence            987543 22  2  57788899999999999977664   3344444445566665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	518
d2f69a2	171	b.85.7.1 (A:194-364) Histone H3 K4-specific methyl	4e-11
d1ml9a_	284	b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T	1e-10
d2g46a1	119	b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth	8e-09
d1mvha_	269	b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d2h2ja2	261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	1e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-04

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 4e-11
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 313 WALASFINHSCSPNA-----RRVHVGDYIIVHASRDVKAGEEITFAY-FDMLLPLEKRKE 366
            +L    NHS +PN           G    +   R V+A EE+T AY +D   P +   E
Sbjct: 96  ASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPE 155

Query: 367 MSKTWGFHCKCKRC 380
             + +    K  + 
Sbjct: 156 APEWYQVELKAFQA 169

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score = 60.0 bits (144), Expect = 1e-10
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 264 RPEAEERRSSNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSC 323
             EA+ RR+ +       +           D++   + G+   + G  +     FINHSC
Sbjct: 161 SEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSC 220

Query: 324 SPNARRVHV--------GDYIIVHASRDVKAGEEITFAYFDMLLPLE--KRKEMSKTWGF 373
            PN                 + + A +D+  G E+TF Y + L  LE         +   
Sbjct: 221 DPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMT 280

Query: 374 HCKC 377
            C C
Sbjct: 281 KCLC 284

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

 Score = 51.3 bits (122), Expect = 8e-09
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 313 WALASFINHSCSPN--ARRVHVGDYIIVHASRDVKAGEEITFAY 354
               +  NHS  PN           + +   + +  GEEIT +Y
Sbjct: 62  LGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISY 105

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 302 GKNKGLYGLGLWALASFINHSCSPNARRVHV--------GDYIIVHASRDVKAGEEITFA 353
                +       ++ F NHSCSPN                 +   A +D++  EE+TF 
Sbjct: 199 ASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFD 258

Query: 354 Y 354
           Y
Sbjct: 259 Y 259

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 12/59 (20%), Positives = 18/59 (30%)

Query: 58  LSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
               A    +  DF+ A R C Q  + E  +   LL    I     R   +       +
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%)

Query: 34  QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALL 93
           Q  I E  +   +  ++      A SN A    +      AL   ++A++I  +   A  
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 94  CKGKILLSLN 103
             G  L  + 
Sbjct: 378 NMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 10/79 (12%), Positives = 24/79 (30%)

Query: 34  QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALL 93
                  ++   QL + +      L   +    + R  D +      A+K      +A  
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71

Query: 94  CKGKILLSLNRYSMALDCF 112
             G +     +   A++ +
Sbjct: 72  NLGNVYKERGQLQEAIEHY 90

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 31/223 (13%), Positives = 63/223 (28%), Gaps = 40/223 (17%)

Query: 171 VQISKSEIS------GRGLFATKNVEAGTLFLV--TKAIATERGILSGE------NSNEN 216
           V  +K+ +       G GL A K++    + L    +       + + E           
Sbjct: 17  VITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPW 76

Query: 217 EQLVMWKNFIDKVMESISKC---QRTRHLISILSSGDNEDEVEVPDVSAFRPEAEERRSS 273
             ++++        +S+ K       +   S +   + E + E+      +     +   
Sbjct: 77  LSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQ-ELQGSQLLKTTVSVKEYV 135

Query: 274 NEKLDMGKILSILDVNSLVEDAISAKVLGK-----------NKGLYGLGLWALASFINHS 322
             +    +   IL    L  D ++                       L +  +A  INHS
Sbjct: 136 KNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHS 195

Query: 323 CSPN-----------ARRVHVGDYIIVHASRDVKAGEEITFAY 354
                          A          + +   VKAGE++   Y
Sbjct: 196 AGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 238

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 16/181 (8%)

Query: 4   QQLRSKATELLLREEWKESVQVYTQFIDL----------------CQSQITETKQEASQL 47
           Q+L+ +   L +  ++ E+   Y + I                     Q  +   +  + 
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 48  SKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSM 107
            +L      A     + +  +  +D A+ + ++A  +               L + +   
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124

Query: 108 ALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPELAEY 167
                +  +       S  T     E+ ++LE   R       D  +   +       + 
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184

Query: 168 I 168
            
Sbjct: 185 Y 185

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 60  NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
                R +  D  NA+   E A++ +  H +A    G       +  +A+   +  L
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	518
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.77
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.75
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.72
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2g46a1	119	Viral histone H3 Lysine 27 Methyltransferase {Para	99.64
d2h2ja2	261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	99.63
d1ml9a_	284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	99.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.49
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.48
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.4
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.36
d2f69a2	171	Histone H3 K4-specific methyltransferase SET7/9 ca	99.34
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.34
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.29
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.24
d1mvha_	269	SET domain of Clr4 {Fission yeast (Schizosaccharom	99.22
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.14
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.14
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.08
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.07
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.02
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.94
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.91
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.9
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.88
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.81
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.78
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.73
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.56
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.49
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.44
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.43
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.36
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.26
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.17
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.15
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.0
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.83
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.74
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.68
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.35
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.67
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.57
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.31
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	86.13

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.8e-19  Score=147.50  Aligned_cols=106  Identities=24%  Similarity=0.299  Sum_probs=101.0

Q ss_pred             CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535            1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ   80 (518)
Q Consensus         1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~   80 (518)
                      +.++.++++|+.+++.|+|++|+..|+++|..+|.++.                  +|.++|.++.++|+|++|+.++++
T Consensus         1 ~~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~   62 (117)
T d1elwa_           1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV------------------LYSNRSAAYAKKGDYQKAYEDGCK   62 (117)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh------------------hhhcccccccccccccccchhhhh
Confidence            57899999999999999999999999999999999987                  999999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      +++++|+++.+|+++|.++..+|+|++|+.+|++++ .+|+++..
T Consensus        63 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  107 (117)
T d1elwa_          63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL  107 (117)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999999999999999999999999999 88766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.77  E-value=2.3e-18  Score=152.03  Aligned_cols=129  Identities=16%  Similarity=0.166  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++..|+.+|+.|+|.+|+..|++||.+.+.......  .............+++|+|.||+++|+|++|+.++++|
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--QILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--HHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            4678999999999999999999999999998876543211  11112233345568999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL  132 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l  132 (518)
                      |+++|+++++|+++|.++..+|+|++|+.+|++++ .+|+++.....+..+.
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 8876655444443333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.75  E-value=1e-17  Score=150.18  Aligned_cols=133  Identities=20%  Similarity=0.277  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.++++|+.+|+.|+|.+|+..|++||.+.|.....   +.+...........+|.|+|.||+++|+|++|+.+++++
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL---SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC---CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc---chhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            46889999999999999999999999999998775541   222223344556678999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK  137 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~  137 (518)
                      ++++|+++++|+++|.++..+|+|++|+.+|++++ .+|+++.....+..+.....+
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999 888776555555555444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.3e-17  Score=148.17  Aligned_cols=134  Identities=16%  Similarity=0.269  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++++|+.+|+.|+|++|+..|++||.+.|.....   ..............+|.|+|.||+++|+|++|+.++++|
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF---SNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC---CSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc---chHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            36788999999999999999999999999998876541   122223334455668999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL  138 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~  138 (518)
                      |+++|+++++|+++|.+|..+|+|++|+.+|++++ .+|+++.....+..+..+.++.
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 8887766555555555444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.8e-17  Score=145.67  Aligned_cols=106  Identities=19%  Similarity=0.352  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.++.+||.+|+.|+|++|+..|+++|.++|+++.                  +|.|+|.+++.+|++++|+.+++++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~ka   70 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSLAYLRTECYGYALGDATRA   70 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh------------------hhhhhHHHHHhccccchHHHHHHHH
Confidence            5789999999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL  125 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~  125 (518)
                      ++++|+++++|+++|.++..+|+|++|+.+|++++ ..|+++...
T Consensus        71 l~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~  115 (159)
T d1a17a_          71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK  115 (159)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999999999999 777665443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.3e-17  Score=152.43  Aligned_cols=105  Identities=20%  Similarity=0.341  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .++.++++||.+|+.|+|++|+..|++||.++|.++.                  +|+|+|.||+++|+|++|+.++++|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~------------------~~~~lg~~y~~~~~~~~Ai~~~~~a   64 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV------------------YYTNRALCYLKMQQPEQALADCRRA   64 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHhHHHHHhhhhhhhhhhHHHHHH
Confidence            4789999999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      ++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++..
T Consensus        65 l~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            99999999999999999999999999999999999 78866543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=1.9e-16  Score=141.78  Aligned_cols=135  Identities=19%  Similarity=0.314  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.++..|+.++..|+|.+|+..|++||.+.+.....  ...............++.|+|.|+.++|+|++|+.+|++||
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA--AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH--SCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhh--hhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            5678899999999999999999999999987654321  01111112233455689999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      +++|+++++|+++|.+|..+|+|++|+++|++++ .+|+++.....+..+..++++..
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 88877655555555554444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.8e-16  Score=132.60  Aligned_cols=98  Identities=15%  Similarity=0.304  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..++++|+.+|..|+|++|+.+|+++|+++|+++.                  ++.|+|.+|.++|+|++|+.++++|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT------------------YITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH------------------HHHhHHHHHHHcCchHHHHHHHHHH
Confidence            4778999999999999999999999999999999876                  9999999999999999999999999


Q ss_pred             HhcCCCch-------HHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535           82 LKIESSHF-------KALLCKGKILLSLNRYSMALDCFKETLV  117 (518)
Q Consensus        82 l~l~p~~~-------ka~~~~g~al~~lg~~~~A~~~~~~al~  117 (518)
                      ++++|.+.       ++|+++|.++..+++|++|+++|++++.
T Consensus        65 l~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            99998764       5778888999999999999999999993

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Viral histone H3 Lysine 27 Methyltransferase
domain: Viral histone H3 Lysine 27 Methyltransferase
species: Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]

Probab=99.64  E-value=2e-16  Score=133.18  Aligned_cols=47  Identities=30%  Similarity=0.425  Sum_probs=40.9

Q ss_pred             cccccccCCCCCCceEEeeC--CEEEEEEcCCCCCCCeEEeecCCCCCC
Q 035535          314 ALASFINHSCSPNARRVHVG--DYIIVHASRDVKAGEEITFAYFDMLLP  360 (518)
Q Consensus       314 ~~~s~~NHsC~PN~~~~~~~--~~~~v~A~rdI~~Geeit~sY~~~~~~  360 (518)
                      +.++++||||.|||...+..  ..+.++|+|||++|||||++|++..|.
T Consensus        63 ~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GEEL~~dYg~~yw~  111 (119)
T d2g46a1          63 GFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWL  111 (119)
T ss_dssp             STTSSCCCCSSCCCEEEECSSSSEEEEECSSCBCTTEEECCCCCSSSCC
T ss_pred             CCeEEEEecCCcCceEEEECCCCEEEEEECcccCCCCEEEEecChhHhc
Confidence            45689999999999987763  489999999999999999999987653

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.63  E-value=2.2e-16  Score=151.51  Aligned_cols=83  Identities=20%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             hhhhhhhccccccchhhhhhhhhCCCCCcceeEeecccccccCCCCCCceEEeeC-----------CEEEEEEcCCCCCC
Q 035535          279 MGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVG-----------DYIIVHASRDVKAG  347 (518)
Q Consensus       279 ~~~~~~i~~~N~f~~~~~~~~~~g~~~~~~~~gl~~~~s~~NHsC~PN~~~~~~~-----------~~~~v~A~rdI~~G  347 (518)
                      ...+..++.+++|...           ...+.+|+|.++++||||.||+...+.+           +.++++|.|||++|
T Consensus       163 ~~~a~~~v~sr~~~~~-----------~~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~G  231 (261)
T d2h2ja2         163 FFWAFGILRSRAFSRL-----------RNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAG  231 (261)
T ss_dssp             HHHHHHHHHHHSBCCC--------------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTT
T ss_pred             HHHHHHHhhccccccc-----------ccccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCC
Confidence            3344555666666421           1346789999999999999999887642           47899999999999


Q ss_pred             CeEEeecCCCCCCHHHHHHhcccCCeEee
Q 035535          348 EEITFAYFDMLLPLEKRKEMSKTWGFHCK  376 (518)
Q Consensus       348 eeit~sY~~~~~~~~~R~~l~~~~~F~C~  376 (518)
                      |||||||++.. +.   .+|+..|||.+.
T Consensus       232 EEI~isYG~~~-~n---~~ll~~yGFv~~  256 (261)
T d2h2ja2         232 EQVYIQYDLNK-SN---AELALDYGFIEP  256 (261)
T ss_dssp             SBCEECSCSSC-CH---HHHHHHSSCCCS
T ss_pred             CEEEEecCCCC-CH---HHHHHhCCCCCC
Confidence            99999998543 22   357788999863

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

Probab=99.50  E-value=1.5e-14  Score=140.14  Aligned_cols=63  Identities=32%  Similarity=0.506  Sum_probs=36.1

Q ss_pred             ccccccCCCCCCceEEee--C------CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHH--HhcccCCeEeec
Q 035535          315 LASFINHSCSPNARRVHV--G------DYIIVHASRDVKAGEEITFAYFDMLLPLEKRK--EMSKTWGFHCKC  377 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~~--~------~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~--~l~~~~~F~C~C  377 (518)
                      .+.++||||.||+.....  +      .+|.++|+|||++|||||++|.+..+..+...  .....+.|.|.|
T Consensus       212 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dYg~~~~~~~~~~~~~~~~~~~~~C~C  284 (284)
T d1ml9a_         212 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC  284 (284)
T ss_dssp             GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------
T ss_pred             hhheeeccccCCcceEEEEeccCCCCceEEEEEECCccCCCCEEEEecCCCCCCchhhcchhhcccCCceeeC
Confidence            367899999999986532  1      37999999999999999999998766544322  244567888988

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=7.1e-14  Score=115.92  Aligned_cols=95  Identities=8%  Similarity=0.010  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      +.+.+.|..+++.|++.+|+..|++++..+|+++.                  +|.++|.++.++|++++|+.+++++++
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~~~~~~A~~~~~~al~   78 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE------------------AWRSLGLTQAENEKDGLAIIALNHARM   78 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccch------------------hhhhhhhhhhhhhhHHHhhcccccccc
Confidence            34577899999999999999999999999999877                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++|++..+|+.+|.+|..+|++++|+++|++.|
T Consensus        79 ~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          79 LDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999986

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.6e-14  Score=117.62  Aligned_cols=100  Identities=15%  Similarity=0.059  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh---ccCHHHHHHHHHHHHh
Q 035535            7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR---LRDFDNALRDCEQALK   83 (518)
Q Consensus         7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~---lg~~~~Al~~~~~al~   83 (518)
                      -+..|.++..+++++|.+.|.++|.++|.++.                  +++|+|.++++   .+++.+|+..+++++.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~------------------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~   64 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS------------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLP   64 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH------------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            45788999999999999999999999999987                  99999999987   4566789999999999


Q ss_pred             cCCCc--hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535           84 IESSH--FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS  124 (518)
Q Consensus        84 l~p~~--~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~  124 (518)
                      .+|.+  ..+|+.+|.+|..+|+|++|+++|++++ .+|+++..
T Consensus        65 ~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            99765  4599999999999999999999999999 88876544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.6e-13  Score=129.57  Aligned_cols=103  Identities=15%  Similarity=0.067  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+..+|..++..|+|++|+..|++||.++|+++.                  +|+++|.++.++|++++|+..++++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~a   97 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE------------------VFNYLGIYLTQAGNFDAAYEAFDSV   97 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH------------------HHhhhchHHHHHHHHHHhhhhhhHH
Confidence            4678889999999999999999999999999999987                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      ++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus        98 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_          98 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Confidence            99999999999999999999999999999999999 776544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.47  E-value=1.4e-13  Score=121.10  Aligned_cols=124  Identities=21%  Similarity=0.233  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      .+...|+.++..|+|++|+..|++||++.|..+.....      ......+.+|.|+|.+|.++|+|++|+.++++++++
T Consensus        11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~------~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1          11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF------DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC------CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc------ccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            44566999999999999999999999999987542110      011123458999999999999999999999999987


Q ss_pred             CCC-----------chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           85 ESS-----------HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        85 ~p~-----------~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      .|.           ..++|+++|.+|..+|++++|+.+|++++ +.|...........+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~  146 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV  146 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHH
Confidence            542           45689999999999999999999999999 777666554334444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.3e-13  Score=121.08  Aligned_cols=98  Identities=13%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +-.+.++|..++..|+|++|++.|+++   .|.++.                  +|+|+|.+|+.+|+|++|+.+|++|+
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~------------------~~~nlG~~~~~~g~~~~A~~~~~kAl   63 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSR------------------ICFNIGCMYTILKNMTEAEKAFTRSI   63 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHH------------------HHHHHHHHHHHcCCchhHHHHHHHHH
Confidence            346678999999999999999999874   333333                  89999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      ++||+++.+|+.+|.++..+|+|++|+..|++++ ..+.+
T Consensus        64 ~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          64 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccC
Confidence            9999999999999999999999999999999999 54433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=7.6e-13  Score=114.89  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=88.3

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc----------cCHHHHHHHHHH
Q 035535           11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL----------RDFDNALRDCEQ   80 (518)
Q Consensus        11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l----------g~~~~Al~~~~~   80 (518)
                      +.+-+.+.|++|+..|++|+.++|+++.                  +++|+|.++..+          +.+++|+..+++
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~------------------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~k   66 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDAD------------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE   66 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchH------------------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            4456788899999999999999999987                  999999999865          456899999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccC-----------hHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           81 ALKIESSHFKALLCKGKILLSLNR-----------YSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~-----------~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      |++++|+++.+|+++|.+|..+|+           |++|+++|++++ .+|+++.....+...
T Consensus        67 Al~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          67 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            999999999999999999988764           799999999999 888765544444433

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.3e-13  Score=118.58  Aligned_cols=44  Identities=34%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             ccccccCCCCCCceEEe--e---CCEEEEEEcCCCCCCCeEEeecCCCC
Q 035535          315 LASFINHSCSPNARRVH--V---GDYIIVHASRDVKAGEEITFAYFDML  358 (518)
Q Consensus       315 ~~s~~NHsC~PN~~~~~--~---~~~~~v~A~rdI~~Geeit~sY~~~~  358 (518)
                      .+.++||||.|||....  .   +..+.++|+|||++|||||++|+...
T Consensus        98 ~~rfiNHsc~pN~~~~~~~~~~~~~~i~~~A~RdI~~GEEL~~dYG~~~  146 (171)
T d2f69a2          98 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH  146 (171)
T ss_dssp             CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCS
T ss_pred             cceeeEccCCCCceEEEEEecCCCeEEEEEEccCcCCCCEEEEEeCCCC
Confidence            45789999999997642  2   23788999999999999999998644

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.3e-12  Score=114.78  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..|.++|+.++..|+|++|+..|++||+++|+++.                  +|+|+|.++.++|+|++|+.++++|+
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~------------------a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV------------------AYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh------------------hHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            567899999999999999999999999999999987                  99999999999999999999999999


Q ss_pred             hcCCCc----------------hHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           83 KIESSH----------------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        83 ~l~p~~----------------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      ...|.+                .++++++|.++..+|++++|++.|.+++ ..|+
T Consensus        98 ~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            875542                4789999999999999999999999999 6654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.3e-12  Score=121.48  Aligned_cols=103  Identities=14%  Similarity=0.187  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+...|..++..|++++|+..|++++...|+++.                  +|.++|.++.++|++++|++.+++++
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL------------------LWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhccccccccccccccc------------------chhhhhhcccccccchhHHHHHHHHH
Confidence            345778899999999999999999999999999876                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +++|+++.+|+.+|.+|..+|+|++|++.|++|+ ..|+++.
T Consensus       234 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            9999999999999999999999999999999999 8887654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.9e-12  Score=100.41  Aligned_cols=90  Identities=12%  Similarity=0.002  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.+.+.|+.+++.|+|.+|+..|++|+++.|....+...           ...++.|+|.++.++|+|++|+..+++||
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~-----------~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTID-----------KVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSC-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCcc-----------HHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            6788999999999999999999999999999876542111           12389999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhcc
Q 035535           83 KIESSHFKALLCKGKILLSLN  103 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg  103 (518)
                      +++|+++.++.+++.....++
T Consensus        74 ~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          74 ELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHhC
Confidence            999999999999987765543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.9e-12  Score=124.14  Aligned_cols=117  Identities=12%  Similarity=0.096  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~~a   81 (518)
                      ++.+...|..+.+.+.+++|++.|++||+++|.+..                  +|.+||.++..+|+ +++|+.+++++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~------------------a~~~r~~~l~~l~~~~~eal~~~~~a  104 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT------------------VWHFRRVLLKSLQKDLHEEMNYITAI  104 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChH------------------HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            566677899999999999999999999999999987                  99999999999875 99999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK  137 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~  137 (518)
                      ++++|++..+|+.+|.++..+|++++|++.|++++ .+|.+......+..++...++
T Consensus       105 l~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~  161 (315)
T d2h6fa1         105 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL  161 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999 888766555555555554443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.5e-12  Score=123.78  Aligned_cols=115  Identities=12%  Similarity=0.112  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLRE-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ   80 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~   80 (518)
                      +...|..+|+.+...| ++++|+..|++++.++|++..                  +|.+||.++.++|++++|+.++++
T Consensus        76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~------------------a~~~~~~~~~~l~~~~eAl~~~~k  137 (315)
T d2h6fa1          76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ------------------VWHHRRVLVEWLRDPSQELEFIAD  137 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh------------------HHHHHhHHHHhhccHHHHHHHHhh
Confidence            5678999999999876 599999999999999999877                  999999999999999999999999


Q ss_pred             HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      +++++|++..+|+.+|.++..+|+|++|+++|++++ .+|.+......+..++..
T Consensus       138 al~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         138 ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 888776655555555443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-11  Score=120.17  Aligned_cols=131  Identities=14%  Similarity=0.116  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------hhhHHH-HHHHH------HHHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---------QEASQL-SKLKK------SLCLALSNRAEARS   66 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~~~~~-~~~~~------~l~~~~~nra~a~~   66 (518)
                      ...+...|..++..|++++|+..|+++++++|+++..-.         ....+. ..+..      ....++.+++.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            345667788888888888888888888888777543100         000000 00000      01136677777888


Q ss_pred             hccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535           67 RLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE  133 (518)
Q Consensus        67 ~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~  133 (518)
                      ++|++++|+..++++++++|+++.+++.+|.+|..+|++++|+.+|++++ .+|+++.....+..++.
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~  384 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888 67666555444544443

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=1.5e-11  Score=117.29  Aligned_cols=42  Identities=36%  Similarity=0.543  Sum_probs=35.3

Q ss_pred             cccccCCCCCCceEEe--eC------CEEEEEEcCCCCCCCeEEeecCCC
Q 035535          316 ASFINHSCSPNARRVH--VG------DYIIVHASRDVKAGEEITFAYFDM  357 (518)
Q Consensus       316 ~s~~NHsC~PN~~~~~--~~------~~~~v~A~rdI~~Geeit~sY~~~  357 (518)
                      +.++||||.||+....  .+      .+|.++|+|||++|||||++|++.
T Consensus       213 aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~  262 (269)
T d1mvha_         213 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGA  262 (269)
T ss_dssp             GGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTT
T ss_pred             eEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCC
Confidence            5788999999997642  22      268999999999999999999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.8e-11  Score=113.68  Aligned_cols=98  Identities=10%  Similarity=0.080  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535            5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI   84 (518)
Q Consensus         5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l   84 (518)
                      ...++|..+++.|+|++|+..|+++|+.+|+++.                  +|.++|.++..+|++++|+..+++++++
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~lg~~~~~~~~~~~A~~~~~~al~~   82 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME------------------AWQYLGTTQAENEQELLAISALRRCLEL   82 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCChHHHHHHHHhhhcc
Confidence            4568999999999999999999999999999877                  9999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535           85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ  120 (518)
Q Consensus        85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~  120 (518)
                      +|++..+|+.+|.+|..+|++++|++.|++++ ..|.
T Consensus        83 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  119 (323)
T d1fcha_          83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA  119 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             ccccccccccccccccccccccccccchhhHHHhccc
Confidence            99999999999999999999999999999999 5553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=2.7e-10  Score=102.00  Aligned_cols=115  Identities=10%  Similarity=0.013  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhh---hhH-HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQ---EAS-QLSKLKKSLCLALSNRAEARSRLRDFDNALRD   77 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~---~~~-~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~   77 (518)
                      ..+.+.+.|+.++..|++++|++.|++||.+.+.....+..   +.. ....+......++.+++.++.++|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            35678999999999999999999999999998766432211   111 22345555667899999999999999999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           78 CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ++++++++|.+..+|..++.+|..+|++++|++.|+++.
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999985

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-10  Score=112.43  Aligned_cols=116  Identities=15%  Similarity=0.169  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|..++..|+|++|+..|.+++...|....                  .+.++|.++.+.|++++|+..++++
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a  263 (388)
T d1w3ba_         202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV------------------VHGNLACVYYEQGLIDLAIDTYRRA  263 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3567889999999999999999999999999888765                  7888888888888888888888888


Q ss_pred             HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      ++++|+++.+++.+|.++..+|++++|++.|++++ ..|.++.....+...+...
T Consensus       264 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence            88888888888888888888888888888888888 6665544444444444333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2.8e-10  Score=106.64  Aligned_cols=110  Identities=15%  Similarity=0.028  Sum_probs=90.2

Q ss_pred             hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535           16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK   95 (518)
Q Consensus        16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~   95 (518)
                      ..+++.|+..+++++...+....              ..+.+++++|.+|.++|+|++|+.++++|++++|+++.+|+.+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~--------------~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~l   77 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDD--------------ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL   77 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhh
Confidence            45778899999998865332111              1123899999999999999999999999999999999999999


Q ss_pred             HHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535           96 GKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE  139 (518)
Q Consensus        96 g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~  139 (518)
                      |.++..+|++++|+.+|++++ ..|+++.....+...+...++..
T Consensus        78 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  122 (259)
T d1xnfa_          78 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK  122 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred             chHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHH
Confidence            999999999999999999999 88887766666666665554443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.02  E-value=4.6e-10  Score=99.24  Aligned_cols=89  Identities=18%  Similarity=0.203  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.++|..+++.|+|++|+..|++||+++|+++.                  +|+++|.++..+|+|++|+.++++|+
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~------------------a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK------------------ALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh------------------HHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            456778999999999999999999999999999877                  99999999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHhccChHHHH
Q 035535           83 KIESSHFKALLCKGKILLSLNRYSMAL  109 (518)
Q Consensus        83 ~l~p~~~ka~~~~g~al~~lg~~~~A~  109 (518)
                      +++|++..++..++.+...+..+.++.
T Consensus       139 ~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         139 EIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887776654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9.3e-10  Score=91.11  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..+...|+.++..|+|++|+..|++++.++|+++.                  +|+++|.++..+|+|++|+..++++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~~g~~~~~~~~~~~A~~~~~~a   97 (117)
T d1elwa_          36 NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK------------------GYSRKAAALEFLNRFEEAKRTYEEG   97 (117)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccchhhhhHHHhccchhh------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4567899999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHH
Q 035535           82 LKIESSHFKALLCKGKIL   99 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al   99 (518)
                      ++++|+++.++..++.+.
T Consensus        98 ~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          98 LKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCTTCHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHh
Confidence            999999999998887764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.94  E-value=3.1e-09  Score=93.77  Aligned_cols=86  Identities=19%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+.+.|..+++.|+|.+|+..|+++|.++|++..                  +|+++|.++..+|+|++|+.++.++++
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~------------------a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK------------------GLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999876                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSM  107 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~  107 (518)
                      ++|++..++..++.+...++.+.+
T Consensus       127 l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         127 VNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999888877654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.3e-09  Score=92.47  Aligned_cols=91  Identities=20%  Similarity=0.172  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      .+..|.+.|..++..|++++|+..|.++|+++|++..                  +|.++|.++..+|+|++|+.+++++
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~------------------a~~~~g~~~~~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          43 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK------------------GYYRRAASNMALGKFRAALRDYETV  104 (159)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4677899999999999999999999999999999877                  9999999999999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHh--ccChHHHHH
Q 035535           82 LKIESSHFKALLCKGKILLS--LNRYSMALD  110 (518)
Q Consensus        82 l~l~p~~~ka~~~~g~al~~--lg~~~~A~~  110 (518)
                      +.++|+++.++..++.+...  .+.+++|+.
T Consensus       105 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_         105 VKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998887776543  333445543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.3e-09  Score=93.06  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+.+.|..+++.|+|++|+..|+++|.++|+++.                  +++++|.++..+|+|++|+.++++|++
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~------------------a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK------------------GLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchh------------------hhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999877                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccChHHHH
Q 035535           84 IESSHFKALLCKGKILLSLNRYSMAL  109 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~~~~A~  109 (518)
                      ++|+++.+...++.+...++++.+..
T Consensus       125 l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         125 LYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988877776554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.90  E-value=2.4e-09  Score=93.01  Aligned_cols=83  Identities=10%  Similarity=0.066  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+.++|..+++.|+|++|+..|++||.++|.+..                  +|+++|.++..+|+|++|+.+++++++
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~k------------------a~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK------------------ALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhh------------------hhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            34567999999999999999999999999999876                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccC
Q 035535           84 IESSHFKALLCKGKILLSLNR  104 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~  104 (518)
                      ++|++..+...++.+...+.+
T Consensus       130 l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         130 LNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHH
Confidence            999999999888887766543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.88  E-value=4.7e-09  Score=86.03  Aligned_cols=85  Identities=9%  Similarity=0.024  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      .++++|.++++.|++.+|+..++++++++|+++.+|+.+|.++..+|++++|+.+|++++ .+|+++.....+...+...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            467899999999999999999999999999999999999999999999999999999999 8888887777777777776


Q ss_pred             HHHHHH
Q 035535          136 KKLEYQ  141 (518)
Q Consensus       136 ~~~~~~  141 (518)
                      ++..+.
T Consensus        98 g~~~~A  103 (112)
T d1hxia_          98 HNANAA  103 (112)
T ss_dssp             HHHHHH
T ss_pred             CCHHHH
Confidence            665544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=8.5e-09  Score=86.57  Aligned_cols=83  Identities=10%  Similarity=0.215  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      .+-++|.+++..|+|++|+..++++|+++|+++.+++.+|.+|..+|+|++|+++|++++ .+|.++.....+...+..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999999 8998888777766666555


Q ss_pred             HHHH
Q 035535          136 KKLE  139 (518)
Q Consensus       136 ~~~~  139 (518)
                      ....
T Consensus        86 g~~~   89 (128)
T d1elra_          86 GNSY   89 (128)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.6e-09  Score=111.03  Aligned_cols=79  Identities=10%  Similarity=0.003  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      ++.++|.++...++|++|+.++.+|++++|++..+|+.+|.++...|++.+|+.+|.+++ ..|+++....++..++.+.
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999999999999999999999999999999999999999999999 7777777777777776554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=5.6e-09  Score=93.70  Aligned_cols=85  Identities=12%  Similarity=0.036  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      .+.+.|..+++.|+|++|+..+++|++++|.++.+|+.+|.+|..+|+|++|+.+|++|+ .+|+++.....+..++...
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            577899999999999999999999999999999999999999999999999999999999 8888777667777777766


Q ss_pred             HHHHHH
Q 035535          136 KKLEYQ  141 (518)
Q Consensus       136 ~~~~~~  141 (518)
                      ++.++.
T Consensus        86 ~~~~~A   91 (201)
T d2c2la1          86 ESYDEA   91 (201)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=7.1e-09  Score=82.32  Aligned_cols=74  Identities=15%  Similarity=0.015  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-------chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535           57 ALSNRAEARSRLRDFDNALRDCEQALKIESS-------HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV  128 (518)
Q Consensus        57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~-------~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l  128 (518)
                      -++++|.++++.|+|.+|+.++++|+++.|.       ...+|+.+|.++..+|+|++|+..|++++ .+|+++....++
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            5679999999999999999999999998654       36789999999999999999999999999 888776554444


Q ss_pred             HH
Q 035535          129 NG  130 (518)
Q Consensus       129 ~~  130 (518)
                      ..
T Consensus        87 ~~   88 (95)
T d1tjca_          87 KY   88 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=1.6e-08  Score=86.90  Aligned_cols=89  Identities=15%  Similarity=0.032  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHh----------hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-
Q 035535            2 LMQQLRSKATELLL----------REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-   70 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~----------~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-   70 (518)
                      +++.+.+.|..++.          .+.+++|+..|++||+++|+++.                  +|+|+|.+|..+|+ 
T Consensus        30 ~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~------------------a~~~lG~~y~~~g~~   91 (145)
T d1zu2a1          30 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE------------------AVWCIGNAYTSFAFL   91 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH------------------HHhhHHHHHHHcccc
Confidence            56788899999885          45568999999999999999987                  99999999988764 


Q ss_pred             ----------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHH
Q 035535           71 ----------FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMA  108 (518)
Q Consensus        71 ----------~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A  108 (518)
                                |.+|++.+++|++++|++..++..++.+....+.|.++
T Consensus        92 ~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          92 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             hhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                      79999999999999999999888888887666666554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.2e-08  Score=85.09  Aligned_cols=85  Identities=13%  Similarity=0.082  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHh---hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 035535            2 LMQQLRSKATELLL---REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDC   78 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~---~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~   78 (518)
                      .++.+.+.|..+++   .+++++|+..|++++..+|....                ..+++|+|.+|.++|+|++|+.++
T Consensus        32 ~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~----------------~~~~~~Lg~~y~~~g~~~~A~~~~   95 (122)
T d1nzna_          32 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ----------------RDYVFYLAVGNYRLKEYEKALKYV   95 (122)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH----------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH----------------HHHHHHHHHHHHHHhhhHHHHHHH
Confidence            45778899999986   56778899999999988765421                118999999999999999999999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHhc
Q 035535           79 EQALKIESSHFKALLCKGKILLSL  102 (518)
Q Consensus        79 ~~al~l~p~~~ka~~~~g~al~~l  102 (518)
                      +++++++|++..|...++.+...+
T Consensus        96 ~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          96 RGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999998888776554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=3.7e-07  Score=87.15  Aligned_cols=107  Identities=21%  Similarity=0.152  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++.+.+.|+.+...|+|++|+..|.+|+++.+.....            .....+|.|+|.||.++|++++|++.+++++
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~------------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~  104 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE------------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence            4567888999999999999999999999987654320            1123489999999999999999999999999


Q ss_pred             hcCCCc------hHHHHHHHHHHHh-ccChHHHHHHHHHHH-hcccc
Q 035535           83 KIESSH------FKALLCKGKILLS-LNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        83 ~l~p~~------~ka~~~~g~al~~-lg~~~~A~~~~~~al-~~p~~  121 (518)
                      ++.+..      ..++.++|.++.. +|+|++|++.|++++ ..+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~  151 (290)
T d1qqea_         105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            986544      6788899999865 799999999999999 55433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=5.8e-07  Score=85.75  Aligned_cols=109  Identities=11%  Similarity=-0.020  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR-LRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~-lg~~~~Al~~~~~a   81 (518)
                      +..+.+.|+.+.+.|++++|+..|++++.+.+.....            .....++.++|.++.. +|+|++|++.+++|
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF------------RRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc------------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            4568889999999999999999999999998776431            1122378899998865 79999999999999


Q ss_pred             HhcCCC------chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535           82 LKIESS------HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG  123 (518)
Q Consensus        82 l~l~p~------~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~  123 (518)
                      +++.+.      ...++..+|.++..+|+|++|+..|++++ ..+..+.
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            987432      35678999999999999999999999999 6655543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.44  E-value=2.8e-07  Score=87.15  Aligned_cols=90  Identities=10%  Similarity=0.013  Sum_probs=81.3

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535            9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH   88 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~   88 (518)
                      ++..+++.|++++|+..|+++|+.+|.++.                  ++.+++.++...|++++|+..++++++++|++
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~------------------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~   63 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDAS------------------LRSSFIELLCIDGDFERADEQLMQSIKLFPEY   63 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence            356788999999999999999999999987                  99999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535           89 FKALLCKGKILLSLNRYSMALDCFKETL  116 (518)
Q Consensus        89 ~ka~~~~g~al~~lg~~~~A~~~~~~al  116 (518)
                      ..++..++.++...+..+++...+.+..
T Consensus        64 ~~~~~~l~~ll~a~~~~~~a~~~~~~~~   91 (264)
T d1zbpa1          64 LPGASQLRHLVKAAQARKDFAQGAATAK   91 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCCEE
T ss_pred             HHHHHHHHHHHHhccccHHHHHHhhhhh
Confidence            9999999999998888877766554443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=2.2e-07  Score=90.26  Aligned_cols=108  Identities=11%  Similarity=0.055  Sum_probs=90.8

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhcCCC
Q 035535           10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD--FDNALRDCEQALKIESS   87 (518)
Q Consensus        10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~--~~~Al~~~~~al~l~p~   87 (518)
                      +..+...|++.+|+..|++++..+|.+..                  ++.++|.++..+++  +++|+..+.++++++|.
T Consensus        80 ~~~~~~~~~~~~al~~~~~~l~~~pk~~~------------------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~  141 (334)
T d1dcea1          80 KSPEESAALVKAELGFLESCLRVNPKSYG------------------TWHHRCWLLSRLPEPNWARELELCARFLEADER  141 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCCcHH------------------HHHHhhHHHHHhccccHHHHHHHHHHHHhhCch
Confidence            44455677799999999999999999877                  99999999988875  89999999999999999


Q ss_pred             chHHH-HHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535           88 HFKAL-LCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS  135 (518)
Q Consensus        88 ~~ka~-~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~  135 (518)
                      +..++ +..|.++...+++++|+..+++++ .+|.+......+..++...
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~  191 (334)
T d1dcea1         142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (334)
T ss_dssp             CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            98886 577899999999999999999999 7776665555555555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=3.3e-07  Score=88.99  Aligned_cols=69  Identities=13%  Similarity=0.085  Sum_probs=56.9

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHH
Q 035535           61 RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVN  129 (518)
Q Consensus        61 ra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~  129 (518)
                      ++.++..++++.+|+..+.+++..+|.+..+|+.+|.++..+|++++|+++|++++ .+|.++.....+.
T Consensus       248 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~  317 (334)
T d1dcea1         248 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  317 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence            44455556777888889999999999999999999999999999999999999999 8886554444443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=2.5e-06  Score=81.21  Aligned_cols=104  Identities=12%  Similarity=0.027  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      ++....+|..++..|++++|+..|+++++..|.+..             .....++.++|.++..+|++++|+..+++++
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~-------------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   78 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF-------------YSRIVATSVLGEVLHCKGELTRSLALMQQTE   78 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH-------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc-------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445556799999999999999999999999887543             1123389999999999999999999999999


Q ss_pred             hcCCC------chHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           83 KIESS------HFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        83 ~l~p~------~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                      ++.|.      ...+++.++.++...|++..|...+.+++ ..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          79 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            87543      35678899999999999999999999998 443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.26  E-value=1.8e-06  Score=74.27  Aligned_cols=79  Identities=14%  Similarity=0.071  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL   82 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al   82 (518)
                      +..+.+.|..+++.|+|++|+..|+++|.+.|..........       .....+++|+|.+|..+|++++|+.++++|+
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~-------~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG-------KLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc-------chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999886543111111       1234489999999999999999999999999


Q ss_pred             hcCCCc
Q 035535           83 KIESSH   88 (518)
Q Consensus        83 ~l~p~~   88 (518)
                      ++.|..
T Consensus       128 ~l~~~~  133 (156)
T d2hr2a1         128 EMIEER  133 (156)
T ss_dssp             HHHHHC
T ss_pred             HhhHHh
Confidence            996643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=4e-06  Score=79.68  Aligned_cols=102  Identities=15%  Similarity=0.042  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..+...|++++|+..|.+++...|.+..              .....+.++|.+++.+|++++|+..+++++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  279 (366)
T d1hz4a_         214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH--------------FLQGQWRNIARAQILLGEFEPAEIVLEELNE  279 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG--------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34566788899999999999999999988765433              0112688999999999999999999999984


Q ss_pred             ------cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535           84 ------IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA  119 (518)
Q Consensus        84 ------l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p  119 (518)
                            ..|....+++.+|.+|..+|++++|++.|++++ ..+
T Consensus       280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                  457778999999999999999999999999999 443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.4e-06  Score=86.81  Aligned_cols=83  Identities=13%  Similarity=-0.020  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535            4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK   83 (518)
Q Consensus         4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~   83 (518)
                      ..+...|..+..+|+|++|+..|.+|+.+.|+++.                  +|+++|.++...|++.+|+.+|.+|+.
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~------------------~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------------------PYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45778999999999999999999999999999987                  999999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHhccC
Q 035535           84 IESSHFKALLCKGKILLSLNR  104 (518)
Q Consensus        84 l~p~~~ka~~~~g~al~~lg~  104 (518)
                      ++|.++.|+.+++.++....+
T Consensus       215 ~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         215 VKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             SSBCCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999876543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=1.6e-05  Score=64.99  Aligned_cols=76  Identities=16%  Similarity=0.061  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhc---cCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535           57 ALSNRAEARSRL---RDFDNALRDCEQALKIESSHF-KALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF  131 (518)
Q Consensus        57 ~~~nra~a~~~l---g~~~~Al~~~~~al~l~p~~~-ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~  131 (518)
                      ..+|.|-++.+.   .+..+|+..++.+++.+|.+. ..+|.+|.+|+.+|+|++|+++++++| ..|++... ..+...
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA-~~L~~~  115 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV-GALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-HHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH-HHHHHH
Confidence            677888888765   456789999999999888764 789999999999999999999999999 77765543 334444


Q ss_pred             HH
Q 035535          132 LE  133 (518)
Q Consensus       132 l~  133 (518)
                      ++
T Consensus       116 Ie  117 (124)
T d2pqrb1         116 VE  117 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=2.9e-05  Score=63.32  Aligned_cols=44  Identities=14%  Similarity=0.049  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 035535           56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKIL   99 (518)
Q Consensus        56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al   99 (518)
                      -+++++|.+|+++|+|++|+..++++|+++|+|..|..-+-.+-
T Consensus        74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            48999999999999999999999999999999999876554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.77  E-value=3.1e-05  Score=72.56  Aligned_cols=72  Identities=8%  Similarity=0.003  Sum_probs=62.4

Q ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535           63 EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK  134 (518)
Q Consensus        63 ~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~  134 (518)
                      .-.++.|++++|+..++++++.+|+++.++..+|.+|...|++++|+..|++++ ..|++......+..++..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            345678999999999999999999999999999999999999999999999999 888766655555555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=0.00013  Score=69.35  Aligned_cols=99  Identities=11%  Similarity=0.069  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535            6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE   85 (518)
Q Consensus         6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~   85 (518)
                      |...+......|++++|...|.++|...|.+..                 .+|...+....+.|+++.|.+.++++++..
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~-----------------~~w~~~~~~~~~~~~~~~ar~i~~~al~~~  164 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-----------------LVYIQYMKFARRAEGIKSGRMIFKKAREDA  164 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-----------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            444555555566666666666666655554422                 034444444445555555555555555555


Q ss_pred             CCchHHHHHHHHHHH-hccChHHHHHHHHHHH-hcccc
Q 035535           86 SSHFKALLCKGKILL-SLNRYSMALDCFKETL-VDAQA  121 (518)
Q Consensus        86 p~~~ka~~~~g~al~-~lg~~~~A~~~~~~al-~~p~~  121 (518)
                      |.....|...|.... ..|+.+.|...|++++ ..|++
T Consensus       165 ~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh
Confidence            555554444444322 2344555555555555 34433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.00015  Score=68.96  Aligned_cols=96  Identities=11%  Similarity=0.008  Sum_probs=80.9

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHH-hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535            9 KATELLLREEWKESVQVYTQFIDL-CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS   87 (518)
Q Consensus         9 ~Gn~~~~~g~~~~Ai~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~   87 (518)
                      .|......+..++|...|.+|+.. .|.+..                  +|...+.....+|++++|...++++++..|.
T Consensus        70 ~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~------------------l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~  131 (308)
T d2onda1          70 KGDMNNAKLFSDEAANIYERAISTLLKKNML------------------LYFAYADYEESRMKYEKVHSIYNRLLAIEDI  131 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHhcccHHHHHHHHHHHHHHhcC
Confidence            444555677889999999999975 455433                  7888999999999999999999999999997


Q ss_pred             ch-HHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535           88 HF-KALLCKGKILLSLNRYSMALDCFKETL-VDAQAS  122 (518)
Q Consensus        88 ~~-ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~  122 (518)
                      +. ..|...+......|+++.|.+.|++++ ..|..+
T Consensus       132 ~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~  168 (308)
T d2onda1         132 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             ChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Confidence            64 578899999999999999999999999 665444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=8.6e-05  Score=65.18  Aligned_cols=61  Identities=8%  Similarity=-0.085  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535            3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA   81 (518)
Q Consensus         3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a   81 (518)
                      ++.+...+..+...|+|++|+..+++++.++|.+..                  +|.+++.++.++|++.+|+..|+++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~------------------~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP------------------LWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            467888999999999999999999999999999876                  9999999999999999999999998

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.00082  Score=61.68  Aligned_cols=93  Identities=11%  Similarity=0.104  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHHH
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDNALRD   77 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~Al~~   77 (518)
                      +++++...|..++.+++|++|+..|++|.+.  ++..                  +++++|.+|..    ..++..|...
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~------------------A~~~Lg~~y~~G~~~~~d~~~a~~~   60 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENS------------------GCFNLGVLYYQGQGVEKNLKKAASF   60 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHH------------------HHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHH------------------HHHHHHHHHHcCCCcchhHHHHHHh
Confidence            3678999999999999999999999999875  3333                  89999999998    6799999999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHH
Q 035535           78 CEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETL  116 (518)
Q Consensus        78 ~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al  116 (518)
                      +..+...+  ++.+.+.+|..+..    ..+++.|...|+++.
T Consensus        61 ~~~a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~  101 (265)
T d1ouva_          61 YAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC  101 (265)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             hccccccc--ccchhhccccccccccccchhhHHHHHHHhhhh
Confidence            99988765  77888899988875    468889999999988

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.67  E-value=0.0063  Score=49.67  Aligned_cols=46  Identities=7%  Similarity=0.025  Sum_probs=22.7

Q ss_pred             cCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHH
Q 035535           69 RDFDNALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETL  116 (518)
Q Consensus        69 g~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al  116 (518)
                      .++++|+..++++.+.  +++.+.+.+|..|..    ..++++|++.|+++.
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa   86 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC   86 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhh
Confidence            4455555555555443  244555555555443    234455555555554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.57  E-value=0.0069  Score=55.10  Aligned_cols=90  Identities=16%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHh----hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHH
Q 035535            5 QLRSKATELLL----REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDNALR   76 (518)
Q Consensus         5 ~l~~~Gn~~~~----~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~Al~   76 (518)
                      .+...|..+..    ..+...+...++.+.+.  .++.                  +.+++|.++..    ..++++|+.
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~------------------A~~~lg~~y~~g~~~~~d~~~A~~  203 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSP------------------GCFNAGNMYHHGEGATKNFKEALA  203 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH------------------HHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhccccc--cccc------------------cccchhhhcccCcccccchhhhhh
Confidence            34455555553    34455566666665543  2222                  88999999987    679999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHH
Q 035535           77 DCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETL  116 (518)
Q Consensus        77 ~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al  116 (518)
                      ++.++.+.+  ++.+++.+|.+|..    ..++++|+++|++|.
T Consensus       204 ~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa  245 (265)
T d1ouva_         204 RYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC  245 (265)
T ss_dssp             HHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred             hHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence            999999884  78999999999986    448999999999998

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.31  E-value=0.011  Score=48.20  Aligned_cols=59  Identities=12%  Similarity=0.090  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHHh
Q 035535           57 ALSNRAEARSR----LRDFDNALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETLV  117 (518)
Q Consensus        57 ~~~nra~a~~~----lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~  117 (518)
                      +.+++|..|..    ..++.+|+..++++.+.  .++.+.+++|.+|..    ..++++|+..|++|..
T Consensus        57 a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          57 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             hhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            67888988876    46799999999999886  478999999999987    5689999999999983

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.13  E-value=1.3  Score=33.07  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535            2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQ   34 (518)
Q Consensus         2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p   34 (518)
                      .+-.+..++..+-..|+|++|+.+|.+||++.-
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            355678889999999999999999999998753