Citrus Sinensis ID: 035538

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MASSSPSISLSRPPIITSILNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGIAQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAATKKKKKVKAKPRAGPRGFGQKIDDDDD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEcccccccccccccccccHHHccccccccEEEEccccccHHccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccccccEEccccc
Coil and Loop (DISEMBL)
massspsislsrppiitsilnpkpsrhfhrctvsfstIYCSHTELAAKAIhfhnpcrgiaQKRSKIwrsnatsgevlptestpletsQEMVSSTGDESLSSVISVLLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAATKKKKkvkakpragprgfgqkiddddd
Flexible Loop (DISEMBL)
massspsislsrppIITSilnpkpsrhFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGIAQKRSKIWRSNAtsgevlptestpletSQEMVSSTGDESLSSVISVLLFAAFIALSILTIGVVYIGVTDFLQKRerekfekeeaatkkkkkvkakpragprgfgqkiddddd
Low Complexity Region (SEG)
MAssspsislsrppiitsiLNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGIAQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVisvllfaafialsilTIGVVYIGVTDFLQkrerekfekeeaatkkkkkvkakpraGPRGFGQKIDDDDD
Disordered region (IsUnstruct)
***************ITSILN**PSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGIAQKRSKIW*********************************SVISVLLFAAFIALSILTIGVVYIGVTDFLQ****************************************
Disordered Region (DISOPRED)
************************************************************************************************ESLSSVISVLLFAAFIALSILTIGVVYIGVTDF******************************************
Disordered Region (DISEMBL)
**********SRPPIITSILNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGIAQKRSKIWRSNATS*************************LSSVISVLLFAAFIALSILTIGVVYIGVTDFLQKRER************************RGFGQKIDDDDD
Disordered Region (DISPRO)
*******ISLSRPPIITSILNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGIAQKRSKIWRSNATS******************SSTGDESLSSVISVLLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEE*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSPSISLSRPPIITSILNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGIAQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAATKKKKKVKAKPRAGPRGFGQKIDDDDD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
225434875	175	PREDICTED: uncharacterized protein LOC10	0.988	0.965	0.508	3e-29
224054641	202	predicted protein [Populus trichocarpa]	0.970	0.821	0.436	1e-28
158828252	167	unknown [Boechera divaricarpa]	0.883	0.904	0.421	2e-21
297822645	167	hypothetical protein ARALYDRAFT_901879 [	0.877	0.898	0.412	4e-21
297790301	167	hypothetical protein ARALYDRAFT_920649 [	0.883	0.904	0.421	5e-21
356550293	165	PREDICTED: uncharacterized protein LOC10	0.695	0.721	0.460	1e-19
449450758	176	PREDICTED: uncharacterized protein LOC10	0.660	0.642	0.537	3e-19
15227050	169	uncharacterized protein [Arabidopsis tha	0.824	0.834	0.404	1e-18
255559024	168	conserved hypothetical protein [Ricinus	0.871	0.886	0.4	2e-18
357454233	166	hypothetical protein MTR_2g097680 [Medic	0.736	0.759	0.465	2e-14

>gi|225434875|ref|XP_002283174.1| PREDICTED: uncharacterized protein LOC100248460 [Vitis vinifera] gi|297746039|emb|CBI16095.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 117/177 (66%), Gaps = 8/177 (4%)

Query: 1   MASSSPSISLSRPPIITSILNPKP--SRHFHRCTVSFSTIYCSHTELA-AKAIHFHNPCR 57
           MAS+S   SLS  P   SI N KP  S H H  ++ F  +    T     K I+FH+P  
Sbjct: 1   MASASVCGSLSPLPF-PSIFNSKPPNSLHIHNSSLPFIPLLALRTTTPRKKTINFHHPPH 59

Query: 58  GIAQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSIL 117
            I QK +++WR +A S + LP+E TPLE SQ++VS T DE +S+VIS LLF AF+AL+IL
Sbjct: 60  AIPQKSTQLWRISAVSEDALPSEVTPLENSQQIVS-TSDEGVSTVISALLFVAFVALTIL 118

Query: 118 TIGVVYIGVTDFLQKR-EREKFEKEEAATKKKKKVKAKPRAGPRGFGQKIDDD--DD 171
           TIGV+YI V+DFLQKR + +  ++E A  K  KK K + RAGPRGFGQKID++  DD
Sbjct: 119 TIGVIYIAVSDFLQKREKEKFEKEESAKKKNGKKRKVRARAGPRGFGQKIDEESGDD 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054641|ref|XP_002298342.1| predicted protein [Populus trichocarpa] gi|222845600|gb|EEE83147.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 115/174 (66%), Gaps = 8/174 (4%)

Query: 3   SSSPSISLSRPPIITSILNPKPSR---HFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGI 59
           +S P ISL  PP + S+   KP     H H   ++ ++       L +K    +   + I
Sbjct: 29  TSYPMISLP-PPHLLSVTKTKPPHSCIHNHNKALTLTSPLSLSNPLPSKRTVLYK--QEI 85

Query: 60  AQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSILTI 119
            ++ ++IW+  AT  EVLP+++TPLE++Q+M+S+T D+ + ++IS LLF AF ALSILTI
Sbjct: 86  HRRSTQIWKIKATPEEVLPSDTTPLESTQQMLSTTNDDGVGTIISALLFVAFAALSILTI 145

Query: 120 GVVYIGVTDFLQKREREKFE--KEEAATKKKKKVKAKPRAGPRGFGQKIDDDDD 171
           G++Y+GVTDFLQKRE +K +  +E    K+ KK K + R+GPRGFGQKI++DD+
Sbjct: 146 GIIYLGVTDFLQKRETDKLQKEEESKKKKRVKKRKVRARSGPRGFGQKINEDDE 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158828252|gb|ABW81129.1| unknown [Boechera divaricarpa]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 20/171 (11%)

Query: 2   ASSSPSISLS--RPPIITSILNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGI 59
           A+++PS+SLS  RP       NP  + H       FS        L ++ +  H      
Sbjct: 3   ATTTPSLSLSNFRP----RFQNPVKTHHIS----PFSWSGSRRKILYSRVLRRH------ 48

Query: 60  AQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSILTI 119
            Q+++++WR +AT  E+     +   +S+ +VSS G + ++  I VLLF AF+AL++LTI
Sbjct: 49  -QEKTQLWRVSATPEEISQEIISSDSSSEAIVSSGGQDGVALFIQVLLFVAFLALTVLTI 107

Query: 120 GVVYIGVTDFLQKREREKFEKEEAATKKKKKVKA---KPRAGPRGFGQKID 167
           GVVYIGVT+FL KREREKFEK+EAA + K+  K    + +AGPRGFGQKI+
Sbjct: 108 GVVYIGVTEFLGKREREKFEKDEAAKRSKRGGKKKAMRAKAGPRGFGQKIE 158

Source: Boechera divaricarpa

Species: Boechera divaricarpa

Genus: Boechera

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822645|ref|XP_002879205.1| hypothetical protein ARALYDRAFT_901879 [Arabidopsis lyrata subsp. lyrata] gi|297325044|gb|EFH55464.1| hypothetical protein ARALYDRAFT_901879 [Arabidopsis lyrata subsp. lyrata]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 22/172 (12%)

Query: 2   ASSSPSISLSRPPIITSILNPK---PSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRG 58
           A+++PS+SLS          P+   P +  H   +S+S        L+++ +  H     
Sbjct: 3   ATTTPSLSLSN-------FTPRFQHPVKTHHISPLSWSV--SRRKILSSRVLRVH----- 48

Query: 59  IAQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSILT 118
             ++++++WR +AT  E+     +   +S+ +VSS G + ++ +I VLLF AF+AL++LT
Sbjct: 49  --KEKTQLWRVSATPEEISQEIVSSDSSSEAIVSSGGQDGVALIIQVLLFVAFLALTVLT 106

Query: 119 IGVVYIGVTDFLQKREREKFEKEEAATKKKKKVKA---KPRAGPRGFGQKID 167
           IGVVYIGVT+FL KREREKFEK+EAA K KK  K    + +AGPRGFGQKI+
Sbjct: 107 IGVVYIGVTEFLGKREREKFEKDEAAKKSKKGGKKKAMRAKAGPRGFGQKIE 158

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790301|ref|XP_002863050.1| hypothetical protein ARALYDRAFT_920649 [Arabidopsis lyrata subsp. lyrata] gi|158828186|gb|ABW81065.1| unknown [Arabidopsis lyrata subsp. lyrata] gi|297308855|gb|EFH39309.1| hypothetical protein ARALYDRAFT_920649 [Arabidopsis lyrata subsp. lyrata]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 107/171 (62%), Gaps = 20/171 (11%)

Query: 2   ASSSPSISLS--RPPIITSILNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGI 59
           A+++PS+SLS  RP          P +  H   +S+S        L+++ +  H      
Sbjct: 3   ATTTPSLSLSNFRPRF------QHPVKPHHISPLSWSV--SRRKILSSRVLRVH------ 48

Query: 60  AQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSILTI 119
            ++++++WR +AT  E+     +   +S+ +VSS G + ++ +I VLLF AF+AL++LTI
Sbjct: 49  -KEKTQLWRVSATPEEISQEIVSSDSSSEAIVSSGGQDGVALIIQVLLFVAFLALTVLTI 107

Query: 120 GVVYIGVTDFLQKREREKFEKEEAATKKKKKVKA---KPRAGPRGFGQKID 167
           GVVYIGVT+FL KREREKFEK+EAA K KK  K    + +AGPRGFGQKI+
Sbjct: 108 GVVYIGVTEFLGKREREKFEKDEAAKKSKKGGKKKAMRAKAGPRGFGQKIE 158

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550293|ref|XP_003543522.1| PREDICTED: uncharacterized protein LOC100792546 [Glycine max]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 9/128 (7%)

Query: 48  KAIHFHNPCRGIAQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLL 107
           K I FHNP   + QK S+ +R               ++ ++++  +T D+ +++V+S L 
Sbjct: 42  KLILFHNP---VLQKHSR-FRPLLLPPPPAAAAEDAVDAAEQLYKTT-DQGVATVVSALF 96

Query: 108 FAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAATKKKKKVK----AKPRAGPRGFG 163
           F AF+ LS +TIGVVY+ VTDFLQKRE +KFEKEEAA  K K  K     + RAGPRGFG
Sbjct: 97  FIAFVGLSAITIGVVYLAVTDFLQKRETDKFEKEEAAKGKNKNKKKKKVGRARAGPRGFG 156

Query: 164 QKIDDDDD 171
           QK+ +DDD
Sbjct: 157 QKVVEDDD 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450758|ref|XP_004143129.1| PREDICTED: uncharacterized protein LOC101205908 [Cucumis sativus] gi|449496669|ref|XP_004160194.1| PREDICTED: uncharacterized protein LOC101223634 [Cucumis sativus]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 82/119 (68%), Gaps = 6/119 (5%)

Query: 54  NPCRGIAQKRSKIWRSNA-TSGEVLPTESTPL---ETSQEMVSSTGDESLSSVISVLLFA 109
           NP R   QK+  I R +A TS + LP++S  L   E SQE+V ST D+ +S++ISVLLF 
Sbjct: 48  NPLRQNRQKQLSISRIHAATSQQTLPSDSAALLAAEKSQEIVGSTNDDGVSTIISVLLFT 107

Query: 110 AFIALSILTIGVVYIGVTDFLQ--KREREKFEKEEAATKKKKKVKAKPRAGPRGFGQKI 166
           AFI LSILTIGV+YIGVTDFLQ  ++E+ + E+     K  KK K + R GPRGFGQK+
Sbjct: 108 AFIGLSILTIGVIYIGVTDFLQKREKEKFEKEEAGKKKKSGKKKKVRARGGPRGFGQKV 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227050|ref|NP_180481.1| uncharacterized protein [Arabidopsis thaliana] gi|3980414|gb|AAC95217.1| unknown protein [Arabidopsis thaliana] gi|26451351|dbj|BAC42776.1| unknown protein [Arabidopsis thaliana] gi|28973607|gb|AAO64128.1| unknown protein [Arabidopsis thaliana] gi|330253125|gb|AEC08219.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 103/183 (56%), Gaps = 42/183 (22%)

Query: 2   ASSSPSISLS--RPPIITSILNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGI 59
           A+++PS+SLS  RP   T      P +  H   +S+S        L+ + +  H      
Sbjct: 3   ATTTPSLSLSNFRPRFQT------PVKGHHISPLSWSV--SRRKILSFRVLRLH------ 48

Query: 60  AQKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTG------------DESLSSVISVLL 107
            Q+++++WR +AT          P E SQE+VSS               + ++ +I VLL
Sbjct: 49  -QEKTQLWRVSAT----------PEEISQEIVSSDSSSSSGAVVSSGGQDGVALIIQVLL 97

Query: 108 FAAFIALSILTIGVVYIGVTDFLQKREREKFEKEE---AATKKKKKVKAKPRAGPRGFGQ 164
           F AF+AL++LTIGVVYIGVT+FL KREREKFEK+E    + K  KK   + RAGPRGFGQ
Sbjct: 98  FVAFLALTVLTIGVVYIGVTEFLGKREREKFEKDEAAKKSKKGGKKKAMRARAGPRGFGQ 157

Query: 165 KID 167
           KI+
Sbjct: 158 KIE 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559024|ref|XP_002520535.1| conserved hypothetical protein [Ricinus communis] gi|223540377|gb|EEF41948.1| conserved hypothetical protein [Ricinus communis]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 100/160 (62%), Gaps = 11/160 (6%)

Query: 20  LNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRG-----IAQKRSKIWRSNATSG 74
           L+P P     +  +  S++  SH  LAA ++    P        + Q+R++IWR  A   
Sbjct: 8   LHPHPLLSITKPRLPHSSL-ASH-NLAAPSLSLSTPFTTKRATILFQRRTQIWRLYAAPE 65

Query: 75  EVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSILTIGVVYIGVTDFL---Q 131
           E LP+++  LE++Q+ +++T D+  +++IS+LLF AF+ L+ILT+GV+Y+GVTDFL   +
Sbjct: 66  EALPSDTAALESAQK-IAATSDDPTANIISLLLFIAFVVLAILTVGVIYLGVTDFLGKRE 124

Query: 132 KREREKFEKEEAATKKKKKVKAKPRAGPRGFGQKIDDDDD 171
           K + EK E  +   K  KK K + R GPRGFGQKI ++DD
Sbjct: 125 KEKFEKEEAAKKKKKGGKKGKVRARTGPRGFGQKIKEEDD 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454233|ref|XP_003597397.1| hypothetical protein MTR_2g097680 [Medicago truncatula] gi|355486445|gb|AES67648.1| hypothetical protein MTR_2g097680 [Medicago truncatula]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 94/144 (65%), Gaps = 18/144 (12%)

Query: 31  CTVSFSTIYCSHTELAAKAIHFHNPCRGIAQKRSKIWRSNATSGEVLPTESTPLETSQEM 90
            T SFS I  + T    K+I+F        Q++SK+W +   +  V   E   ++ S+++
Sbjct: 37  TTSSFSPIITTTTR---KSIYF--------QRKSKLWPNPVAATAV---EDAAIDASEQL 82

Query: 91  VSSTG-DESLSSVISVLLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAATKKKK 149
            SST  D+ +S ++S L F AFI LS++TIGV+Y+ VTDFL KRE+EKFEKEEAA+ KKK
Sbjct: 83  ASSTATDDGVSIIVSALFFIAFIGLSVITIGVIYLAVTDFLTKREKEKFEKEEAASGKKK 142

Query: 150 KVKAKPRAGPRGFGQKI---DDDD 170
           + +   RAGP+GFGQKI   +DDD
Sbjct: 143 RKRKVVRAGPKGFGQKIVQTEDDD 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2043192	169	AT2G29180 "AT2G29180" [Arabido	0.631	0.639	0.316	1.1e-09

TAIR|locus:2043192 AT2G29180 "AT2G29180" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 37/117 (31%), Positives = 57/117 (48%)

Query:    61 QKRSKIWRSNAT----SGEVLPTESTPLETSQEMVSSTGDESLSSVXXXXXXXXXXXXXX 116
             Q+++++WR +AT    S E++ ++S+   +S  +VSS G + ++ +              
Sbjct:    49 QEKTQLWRVSATPEEISQEIVSSDSS--SSSGAVVSSGGQDGVALIIQVLLFVAFLALTV 106

Query:   117 XTIGVVYIGVTDFL---QXXXXXXXXXXXXXXXXXXXXXXXXXXGPRGFGQKIDDDD 170
              TIGVVYIGVT+FL   +                          GPRGFGQKI+DDD
Sbjct:   107 LTIGVVYIGVTEFLGKREREKFEKDEAAKKSKKGGKKKAMRARAGPRGFGQKIEDDD 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       113   0.00091  102 3  11 22  0.49    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.56u 0.18s 12.74t   Elapsed:  00:00:01
  Total cpu time:  12.56u 0.18s 12.74t   Elapsed:  00:00:01
  Start:  Thu May  9 20:31:53 2013   End:  Thu May  9 20:31:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PF08229	196	SHR3_chaperone: ER membrane protein SH3 ; InterPro	94.79
PF14880	59	COX14: Cytochrome oxidase c assembly	89.7
smart00786	196	SHR3_chaperone ER membrane protein SH3. This famil	89.49
PF11770	158	GAPT: GRB2-binding adapter (GAPT); InterPro: IPR02	86.65
PF11044	49	TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 tran	83.95
PF14981	51	FAM165: FAM165 family	82.32

>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []

Probab=94.79  E-value=0.041  Score=46.15  Aligned_cols=39  Identities=28%  Similarity=0.472  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHhhheeeeeehhhhhhhHHHHHHHHHHHHhh
Q 035538          105 VLLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAATK  146 (171)
Q Consensus       105 ~LlfvAfvgLsilTiGViYL~VtdFlqKRe~EkfeKeEaak~  146 (171)
                      +++.++++|..+|=+|--|   .+..+.++.++|++||++++
T Consensus       138 ~Ii~~~LvGVLvLQaG~~Y---Ae~~~~~~~~~~~~~e~~~~  176 (196)
T PF08229_consen  138 TIIALVLVGVLVLQAGQWY---AERKDAKELEEFEKEEAEAA  176 (196)
T ss_pred             HHHHHHHHHHHHHHhhHHH---HhhhhHHHHHHHHHHHHHHH
Confidence            4667788899999999998   78888889998888874333

Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.

>PF14880 COX14: Cytochrome oxidase c assembly

Probab=89.70  E-value=0.39  Score=32.80  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhhheeeeeehhhhhhhHHHHHHHHHHHHhhh
Q 035538          106 LLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAATKK  147 (171)
Q Consensus       106 LlfvAfvgLsilTiGViYL~VtdFlqKRe~EkfeKeEaak~k  147 (171)
                      +...+.+|+++...|++-..+-++.+.+++++.+-+|.++++
T Consensus        16 ~tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~~~~~~e~~~~~   57 (59)
T PF14880_consen   16 TTVLGLIGFTVYGGGLTVYTVYSYFKYNRRRRAEWIEREKQK   57 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345566778888888777789999999988887666665554

>smart00786 SHR3_chaperone ER membrane protein SH3

Probab=89.49  E-value=0.48  Score=40.15  Aligned_cols=38  Identities=21%  Similarity=0.482  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHhhheeeeeehhhhhhhHHHHHHHHHHHHh
Q 035538          105 VLLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAAT  145 (171)
Q Consensus       105 ~LlfvAfvgLsilTiGViYL~VtdFlqKRe~EkfeKeEaak  145 (171)
                      +++.++++|..+|=.|--|   .+..+.++.|+|.|||+++
T Consensus       138 ~Il~~vLvGVL~LQaG~wY---Aer~~~~~~~~~~~~~~~~  175 (196)
T smart00786      138 TILLFVLVGVLVLQAGLWY---AERKDAKQKEEFAAEERKE  175 (196)
T ss_pred             hhHHHHHHHHHHHHhhHHH---HHHhHHHHHHHHHHHHHHH
Confidence            4667778888899999887   5788888888887776544

This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.

>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []

Probab=86.65  E-value=0.98  Score=37.55  Aligned_cols=44  Identities=32%  Similarity=0.527  Sum_probs=30.3

Q ss_pred             hhhccCCcchHHHHHHHHHHHHHHHHHhhheeeee---------ehhhhhhhHHHH
Q 035538           90 MVSSTGDESLSSVISVLLFAAFIALSILTIGVVYI---------GVTDFLQKRERE  136 (171)
Q Consensus        90 ~~~s~~d~g~a~vis~LlfvAfvgLsilTiGViYL---------~VtdFlqKRe~E  136 (171)
                      |..+-+...++..|.+.|++   -|.|..||+++-         .+--|||+|-..
T Consensus         1 mL~s~gn~sv~i~igi~Ll~---lLl~cgiGcvwhwkhr~~~~ftLPkflqRRssk   53 (158)
T PF11770_consen    1 MLKSCGNTSVAISIGISLLL---LLLLCGIGCVWHWKHRDSTRFTLPKFLQRRSSK   53 (158)
T ss_pred             CcccccCchHHHHHHHHHHH---HHHHHhcceEEEeeccCccccchHHHHHhhhhh
Confidence            34444555666666665554   577888998875         777899998764

In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].

>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses

Probab=83.95  E-value=3.3  Score=28.81  Aligned_cols=31  Identities=39%  Similarity=0.448  Sum_probs=17.6

Q ss_pred             HHHHHHHHhhheeeeeehhhhhhhHHHHHHHHHHHHhhhh
Q 035538          109 AAFIALSILTIGVVYIGVTDFLQKREREKFEKEEAATKKK  148 (171)
Q Consensus       109 vAfvgLsilTiGViYL~VtdFlqKRe~EkfeKeEaak~kk  148 (171)
                      +|.+||+|      |-.+   =|=|-+.|++||.+.|+.+
T Consensus        18 f~~iGl~I------yQki---kqIrgKkk~KKeie~ke~~   48 (49)
T PF11044_consen   18 FAWIGLSI------YQKI---KQIRGKKKEKKEIERKEDK   48 (49)
T ss_pred             HHHHHHHH------HHHH---HHHHhhhhhHHHHHHHhhc
Confidence            34467664      4333   3456666777776666554

The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.

>PF14981 FAM165: FAM165 family

Probab=82.32  E-value=1.7  Score=30.43  Aligned_cols=26  Identities=38%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eeeehhhhhhhHHHHHHHHHHHHhhh
Q 035538          122 VYIGVTDFLQKREREKFEKEEAATKK  147 (171)
Q Consensus       122 iYL~VtdFlqKRe~EkfeKeEaak~k  147 (171)
                      .+-||.=|=.||+++|.+|+|++|++
T Consensus        23 aFAgvK~yQ~krlEak~~k~~aekk~   48 (51)
T PF14981_consen   23 AFAGVKMYQRKRLEAKLKKLEAEKKK   48 (51)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            34467778889999999999888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	92.06

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=92.06  E-value=0.13  Score=36.33  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhheeeeeehhhhhhhHHHHHHHHHHH
Q 035538          100 SSVISVLLFAAFIALSILTIGVVYIGVTDFLQKREREKFEKEEA  143 (171)
Q Consensus       100 a~vis~LlfvAfvgLsilTiGViYL~VtdFlqKRe~EkfeKeEa  143 (171)
                      +.+..++..+..+||.+|-+   +--++.+-++||-+|||||-.
T Consensus        12 ~Iv~gvi~gilliGllllli---wk~~~~i~DrrE~~kFEkE~~   52 (79)
T 2knc_B           12 VVLLSVMGAILLIGLAALLI---WKLLITIHDRKEFAKFEEERA   52 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666665543   444577889999999998833

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00