Citrus Sinensis ID: 035554
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LQL2 | 614 | Nitrate transporter 1.5 O | yes | no | 0.962 | 0.881 | 0.507 | 1e-163 | |
| Q8GXN2 | 589 | Nitrate transporter 1.8 O | no | no | 0.959 | 0.915 | 0.493 | 1e-151 | |
| Q3E9B5 | 609 | Putative peptide/nitrate | no | no | 0.943 | 0.870 | 0.457 | 1e-138 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.943 | 0.929 | 0.398 | 1e-122 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.941 | 0.904 | 0.390 | 1e-118 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.939 | 0.894 | 0.371 | 1e-111 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.941 | 0.928 | 0.383 | 1e-107 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.895 | 0.922 | 0.343 | 4e-95 | |
| Q9FNL8 | 586 | Peptide transporter PTR3- | no | no | 0.941 | 0.902 | 0.331 | 8e-89 | |
| Q9FNL7 | 582 | Peptide transporter PTR3- | no | no | 0.909 | 0.878 | 0.344 | 1e-88 |
| >sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 573 bits (1478), Expect = e-163, Method: Compositional matrix adjust.
Identities = 289/570 (50%), Positives = 386/570 (67%), Gaps = 29/570 (5%)
Query: 14 TKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEA 73
T+DG++D++G+P+I+ +G W G ++L+NQGLA LAF GV VN+VLF VL+Q NA+A
Sbjct: 21 TRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADA 80
Query: 74 SNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133
+N S+W G++Y+ SL+GAFLSDSY GRY TC FQ +IGL LS ++ FL+RP GC
Sbjct: 81 ANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGC 140
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G C HS E +FY SIYL ALG G +P +AT GADQFDEE PKE SK +F+S
Sbjct: 141 GDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFS 200
Query: 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNP 253
YFY+ALNLG LFS T+L Y E+ G W LGFW G I+ L GT RYR+FKP+GNP
Sbjct: 201 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNP 260
Query: 254 LSRFSQVIVASLRKINLEMPTNGGGLF---EVHVREYEANGTRRILHTNDFKFLDRAAIM 310
LSRF QV+VA+ +K ++E P G + + N RRI+HT++FKFLD+AA +
Sbjct: 261 LSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYI 320
Query: 311 TSADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGAA 347
T+ D+ + + N WRLC VTQVEE M SLFVEQGAA
Sbjct: 321 TARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAA 380
Query: 348 MNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLA 407
MNT VS+F+IPPASM++FDI+S FI LY +++ P+ + K K +EL R+GIGL
Sbjct: 381 MNTSVSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLV 440
Query: 408 IATVAMIIAGIVEQRRLKYASFG---GEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFF 464
IA +AMI AGIVE RLKYA + +SSLSIFWQ PQY L+G SE F+YV Q+EFF
Sbjct: 441 IAVIAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFF 500
Query: 465 ASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFF 524
+Q P+GLKS G AL M S ++G +V S+++++V+ ++T++ PGW+P NLN GHLDRF+
Sbjct: 501 NAQTPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFY 560
Query: 525 FLSATVTAMNLGVFVVCARRYKSISLQKQE 554
FL A +T+++L V++ CA+ YK I L+ ++
Sbjct: 561 FLLAALTSIDLVVYIACAKWYKPIQLEGKD 590
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Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 285/578 (49%), Positives = 373/578 (64%), Gaps = 39/578 (6%)
Query: 5 IEERLRH--AYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFA 62
+++++R T+DGS+D HG PAI+ TG W L+LVNQGLA LAF GV VN+VLF
Sbjct: 1 MDQKVRQFEVCTQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFL 60
Query: 63 KSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFA 122
V+ Q NAEA+N S+W G++Y+ SL+GAFLSDSY GRY TC FQA + GL+ LS +
Sbjct: 61 TRVMGQDNAEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLS 120
Query: 123 TQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP 182
T + LL P GCG C PHS +T +FY+S+YL ALG G +P +ATFGADQFD ED
Sbjct: 121 TGALLLEPSGCGVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDS 180
Query: 183 KEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242
E SK +F+SYFY+ALNLG LFS TVL Y E+ G W LGFW AG L GT
Sbjct: 181 VEGHSKIAFFSYFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTP 240
Query: 243 RYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFK 302
+YRHF P +P SRF QV+VA+ RK +++ L++ E + G ++ILHT F+
Sbjct: 241 KYRHFTPRESPWSRFCQVLVAATRKAKIDVHHEELNLYD---SETQYTGDKKILHTKGFR 297
Query: 303 FLDRAAIMTSAD----ITTNEDQNPNQWRLCTVTQVEE---------------------- 336
FLDRAAI+T D + + +P WRLC+VTQVEE
Sbjct: 298 FLDRAAIVTPDDEAEKVESGSKYDP--WRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFT 355
Query: 337 -MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAK-RRPK 394
M SLFV QGAAM T + NF+IP +SM++FDI+S FI Y + + PL+ ++ K R K
Sbjct: 356 QMASLFVVQGAAMKTNIKNFRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNK 415
Query: 395 TPSELQRVGIGLAIATVAMIIAGIVEQRRLKYAS----FGGEETSSLSIFWQTPQYVLLG 450
+ELQR+GIGL IA +AMI AGIVE RLK +S+LSIFWQ PQY+L+G
Sbjct: 416 GLTELQRMGIGLVIAIMAMISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIG 475
Query: 451 VSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGW 510
SE F+YV Q+EFF SQ P GLKS AL M+S ++G YV S+++S+VM ++T + GW
Sbjct: 476 ASEVFMYVGQLEFFNSQAPTGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGW 535
Query: 511 VPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548
+P NLN GHL+RF+FL A +TA + V+++CA+ YK I
Sbjct: 536 IPENLNKGHLERFYFLLAGLTAADFVVYLICAKWYKYI 573
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Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E9B5|PTR51_ARATH Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1263), Expect = e-138, Method: Compositional matrix adjust.
Identities = 261/571 (45%), Positives = 352/571 (61%), Gaps = 41/571 (7%)
Query: 14 TKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEA 73
+ D L + + GGW +LLVNQGLA LAF GV VN+VLF V+ Q NAEA
Sbjct: 43 SNDSDLQKKMMKKEEKKNGGWTNAIILLVNQGLATLAFFGVGVNLVLFLTRVMGQGNAEA 102
Query: 74 SNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133
+N S+W G++Y+ SL+GAFLSDSY GRYLTC FQ +IG+ LSF + FL++P GC
Sbjct: 103 ANNVSKWTGTVYMFSLVGAFLSDSYWGRYLTCTIFQVIFVIGVGLLSFVSWFFLIKPRGC 162
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G C+P S AIFY+S+YL A G G +P LATFGADQ D+ +K SK +F+S
Sbjct: 163 GDGDLECNPPSSLGVAIFYLSVYLVAFGYGGHQPTLATFGADQLDD----DKNSKAAFFS 218
Query: 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNP 253
YFY ALN+G LFS T+LVY E+ G W GF + G I+A + L+ T +YR+ KP GNP
Sbjct: 219 YFYFALNVGALFSNTILVYFEDKGLWTEGFLVSLGSAIVALVAFLAPTRQYRYVKPCGNP 278
Query: 254 LSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSA 313
L R +QV VA+ RK ++ P + L+E+ E G+R+I H+ F FLDRAA++T
Sbjct: 279 LPRVAQVFVATARKWSVVRPGDPHELYELEGPESAIKGSRKIFHSTKFLFLDRAAVITEN 338
Query: 314 DITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGAAMNT 350
D N WRLC+VTQVEE M SLFVEQG MN
Sbjct: 339 D---RNGTRSNAWRLCSVTQVEEAKCVMKLLPIWLCTIIYSVIFTQMASLFVEQGDVMNA 395
Query: 351 GVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIAT 410
V F IP ASM+ FDI S +Y +I P Y++ P+EL R+GIGL I
Sbjct: 396 YVGKFHIPAASMSVFDIFSVFVSTGIYRHIIFP-YVR--------PTELMRMGIGLIIGI 446
Query: 411 VAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPN 470
+AM+ AG+ E +RLK G++ S L+I WQ PQYVL+G SE F+YV Q+EFF Q P+
Sbjct: 447 MAMVAAGLTEIQRLKRV-VPGQKESELTILWQIPQYVLVGASEVFMYVGQLEFFNGQAPD 505
Query: 471 GLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTK-NGKPGWVPPNLNDGHLDRFFFLSAT 529
GLK+LG +L M+S A+G YV S+++++VM +T + PGW+P NLN+GH+DRF+FL A
Sbjct: 506 GLKNLGSSLCMASMALGNYVSSLMVNIVMAITKRGENSPGWIPENLNEGHMDRFYFLIAA 565
Query: 530 VTAMNLGVFVVCARRYKSISLQKQEGESAAG 560
+ A++ V+++ A+ Y+ IS + + +G
Sbjct: 566 LAAIDFVVYLIFAKWYQPISHDEDSIKGGSG 596
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/565 (39%), Positives = 354/565 (62%), Gaps = 35/565 (6%)
Query: 10 RHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT 69
+ YT+DG++D H PA K++TG W+ +L N+ LA+ G+ N+V + +S L Q
Sbjct: 4 KDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQG 63
Query: 70 NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLR 129
NA A+N + W G+ Y++ L+GAF++D+YLGRY T TF + G+ L+ + L+
Sbjct: 64 NATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLK 123
Query: 130 PHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189
P C C P+S ++TA+F++++Y+ ALG G +P +++FGADQFDE D EK K+
Sbjct: 124 PGNCN--ADTCHPNS-SQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180
Query: 190 SFYSYFYIALNLGCLFSETVLVYAE-NMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFK 248
SF+++FY ++N+G L + TVLV+ + N+G W GF + ++A G+ YR +
Sbjct: 181 SFFNWFYFSINVGALIAATVLVWIQMNVG-WGWGFGVPTVAMVIAVCFFFFGSRFYRLQR 239
Query: 249 PSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAA 308
P G+PL+R QVIVA+ RKI++++P + LFE E G+R+++HT++ KF D+AA
Sbjct: 240 PGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAA 299
Query: 309 IMTSADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQG 345
+ + +D + + NP WRLC+VTQVEE M ++FV QG
Sbjct: 300 VESQSDSIKDGEVNP--WRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQG 357
Query: 346 AAMNTGV-SNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGI 404
M+ + NF+IP AS++ FD VS + +YD+ I+PL K R + ++LQR+GI
Sbjct: 358 NTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFT-RNERGFTQLQRMGI 416
Query: 405 GLAIATVAMIIAGIVEQRRLKYASFGG---EETSSLSIFWQTPQYVLLGVSEAFVYVAQM 461
GL ++ AMI AG++E RL Y ++ +SIFWQ PQY+L+G +E F ++ Q+
Sbjct: 417 GLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQL 476
Query: 462 EFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLD 521
EFF Q P+ ++SL ALS+++ A+G Y+ +++++VVM +T KNGKPGW+P NLN GHLD
Sbjct: 477 EFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLD 536
Query: 522 RFFFLSATVTAMNLGVFVVCARRYK 546
FF+L AT++ +N V++ ++RYK
Sbjct: 537 YFFYLLATLSFLNFLVYLWISKRYK 561
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/561 (39%), Positives = 337/561 (60%), Gaps = 32/561 (5%)
Query: 13 YTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE 72
Y +DGS+DF+G P +K++TG W+ +L N+ LA+ G+ N++ + + L Q N
Sbjct: 24 YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83
Query: 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHG 132
A+ + W G+ YL+ L+GA L+D+Y GRY T F IG+ L+ + L+P
Sbjct: 84 AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE 143
Query: 133 CGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192
C IG C +PA+ A+F+ +YL ALG G +P +++FGADQFD+ D +E+ K SF+
Sbjct: 144 C--IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGN 252
++FY ++N+G L S ++LV+ + W LGF I LA +S GT YR KP G+
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 253 PLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTS 312
P++R SQV+VAS RK ++++P + L+E + G+R+I HT+D ++LD+AA+++
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISE 321
Query: 313 ADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGAAMN 349
+ + N WRLCTVTQVEE M ++FV+QG AMN
Sbjct: 322 EE--SKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMN 379
Query: 350 TGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIA 409
+ +FQ+PPA++ FD S ++ LYD+ IVPL K K +E+QR+GIGL ++
Sbjct: 380 CKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVD-KGFTEIQRMGIGLFVS 438
Query: 410 TVAMIIAGIVEQRRLKYAS-FGGEETSS---LSIFWQTPQYVLLGVSEAFVYVAQMEFFA 465
+ M A IVE RL A+ G E+ + +S+ WQ PQY +LG +E F ++ Q+EFF
Sbjct: 439 VLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFY 498
Query: 466 SQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFF 525
Q P+ ++SL AL++ + A+G Y+ S+IL++V TT+NG+ GW+ NLN GHLD FF+
Sbjct: 499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFW 558
Query: 526 LSATVTAMNLGVFVVCARRYK 546
L A ++ +N+ V+ A RYK
Sbjct: 559 LLAGLSLVNMAVYFFSAARYK 579
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/562 (37%), Positives = 343/562 (61%), Gaps = 34/562 (6%)
Query: 15 KDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEAS 74
+DGS+D +G P K +TG W+ +L N+ LA+ G+ N++ + S L ++N A+
Sbjct: 37 EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96
Query: 75 NTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCG 134
+ W G+ Y++ L+GA ++DSY GRY T +F A IG+ L+ + +L+P C
Sbjct: 97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156
Query: 135 KIGQ-LCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
+ LC P + + A+F+ +YL ALG G +P +++FGADQFD+ DP+E+ K SF++
Sbjct: 157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216
Query: 194 YFYIALNLGCLFSETVLVYA-ENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGN 252
+FY ++N+G S T+LV+ EN+G W LGF I ++ +S GT YR KP G+
Sbjct: 217 WFYFSINIGSFISSTLLVWVQENVG-WGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGS 275
Query: 253 PLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTS 312
P++R QV+VA+ RK+ L +P + L+E + G+R+I HT+ +KFLD+AA+++
Sbjct: 276 PITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISE 335
Query: 313 ADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGAAMN 349
+ + NP W+LCTVTQVEE + +LFV+QG +MN
Sbjct: 336 YESKSGAFSNP--WKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMN 393
Query: 350 TGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIA 409
+ +F+IPPAS FD + I +YD+ +VP +++ PK ++LQR+GIGL ++
Sbjct: 394 RIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVP-FVRRFTGIPKGLTDLQRMGIGLFLS 452
Query: 410 TVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIP 469
+++ A IVE RL+ A ++ ++SIFWQ PQY+L+G++E F ++ ++EFF + P
Sbjct: 453 VLSIAAAAIVETVRLQLA----QDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESP 508
Query: 470 NGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSAT 529
+ ++S+ AL++ +TA+G+Y+ S+IL++V T GK GWVP +LN GHLD FF+L +
Sbjct: 509 DAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVS 568
Query: 530 VTAMNLGVF-VVCARRYKSISL 550
+ +N+ V+ ++C + K +L
Sbjct: 569 LGLVNIPVYALICVKHTKKKAL 590
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 218/569 (38%), Positives = 336/569 (59%), Gaps = 40/569 (7%)
Query: 7 ERLRHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL 66
E + YTKDG+LD H KPA K++TG W+ +L + LA+ G+ N++ + + +
Sbjct: 2 EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61
Query: 67 RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSF 126
N AS + S W G+ Y + L+GAF++D+YLGRY T +F I G+ L+ +
Sbjct: 62 NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121
Query: 127 LLRPHGCGKIGQLCDPHSPA-ETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185
L P C G+ C H+ A +TAI +I++YL ALG G +P +++FGADQFD+ D KEK
Sbjct: 122 GLTPT-CS--GETC--HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176
Query: 186 KSKTSFYSYFYIALNLGCLFSETVLVYAE-NMGY-WVLGFWICAGCDILAFSSLLSGTLR 243
+SK+SF+++FY +N+G + + +VLV+ + N+G+ W LG A + F +G+
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVF--FFAGSNF 234
Query: 244 YRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKF 303
YR KP G+PL+R QVIVAS RK +++P + L+E E G+R++ HT F
Sbjct: 235 YRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTF 294
Query: 304 LDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSL----------------------- 340
D+AA+ T +D + W+LCTVTQVEE+ +L
Sbjct: 295 FDKAAVETESD--NKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTV 352
Query: 341 FVEQGAAMNTGVS-NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSEL 399
FV QG ++ + NF+IP AS++ FD +S + +YDKLIVP K + ++L
Sbjct: 353 FVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHE-RGFTQL 411
Query: 400 QRVGIGLAIATVAMIIAGIVEQRRLKYA---SFGGEETSSLSIFWQTPQYVLLGVSEAFV 456
QR+GIGL I+ +M+ AGI+E RL Y + EET ++IFWQ PQY L+G +E F
Sbjct: 412 QRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFT 471
Query: 457 YVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLN 516
++ Q+EFF Q P+ ++SL ALS+++ A G Y+ + ++++V +T G+PGW+ NLN
Sbjct: 472 FIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLN 531
Query: 517 DGHLDRFFFLSATVTAMNLGVFVVCARRY 545
+GHLD FF+L A ++ +N V++ A+ Y
Sbjct: 532 NGHLDYFFWLLAGLSFLNFLVYLWIAKWY 560
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 199/580 (34%), Positives = 306/580 (52%), Gaps = 77/580 (13%)
Query: 3 LSIEERLRHA----YTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNM 58
L +EE L Y +DGS+D HG P +K TG W+ + N+ LA+ G+ N+
Sbjct: 11 LEVEESLIQEEVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNL 70
Query: 59 VLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLG 118
+ + + L +TN A+ W G+ Y++ L+GA ++D+Y GRY T F A G++
Sbjct: 71 ITYFTNELHETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVA 130
Query: 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFD 178
L+ + L+P C IG LC P + ++ + + +YL ALG G +P +++FGADQFD
Sbjct: 131 LTLSASVPGLKPAEC--IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFD 188
Query: 179 EEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238
+ DP E+ K SF+++FY +N+G S TVLV+ + W LGF I LA S
Sbjct: 189 KTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFF 248
Query: 239 SGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHT 298
GT YR KP G+P++ QV+VA+ RK NL++P
Sbjct: 249 FGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVP------------------------- 283
Query: 299 NDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE---------------------- 336
D T D N N W+LCTVTQVEE
Sbjct: 284 --------------EDSTDEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHS 329
Query: 337 -MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKT 395
+ +LFV+QG M + F+IPPA++ FD S + +YD++IVPL + K
Sbjct: 330 QIYTLFVQQGRCMKRTIGLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLA-KG 388
Query: 396 PSELQRVGIGLAIATVAMIIAGIVEQRRLKYAS----FGGEETSSLSIFWQTPQYVLLGV 451
+ELQR+GIGL ++ +++ A IVE RL+ A + L+IFWQ PQY L+G
Sbjct: 389 FTELQRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGT 448
Query: 452 SEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWV 511
+ F +V ++EFF Q P+ ++SL A ++ +T +G Y+ S+I+++V L+ GK W+
Sbjct: 449 AGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS---GKDCWI 505
Query: 512 PP-NLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSISL 550
P N+N+GHLD FF+L ++ ++N+ VFV + +Y + +
Sbjct: 506 PSDNINNGHLDYFFWLLVSLGSVNIPVFVFFSVKYTHMKV 545
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 189/570 (33%), Positives = 325/570 (57%), Gaps = 41/570 (7%)
Query: 7 ERLRHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL 66
E + YTKDG++D G + +TG W+ + ++V + +A+ G+ N+V++ + L
Sbjct: 4 EEVGDDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63
Query: 67 RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSF 126
Q ++SN + W+G+ +L+ ++GA+++D++ GRY+T V A ++G+ L+ +
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123
Query: 127 LLRPHGCGKIG-QLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185
L+P C + C+ S + A+F+ ++Y A+G G +P ++T GADQFDE DPK+K
Sbjct: 124 GLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDK 183
Query: 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYR 245
K SF++++ ++ G F+ TVLVY ++ W +G+ + + L GT YR
Sbjct: 184 IHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYR 243
Query: 246 HFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLD 305
H P G+P ++ ++VIVASLRK M ++ +E+ EY + I T+ +FL+
Sbjct: 244 HKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLN 303
Query: 306 RAAIMTSADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFV 342
RA++ T + ++WRLCT+T+VEE +++LF+
Sbjct: 304 RASLKTGST---------HKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354
Query: 343 EQGAAMNTGVS-NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQR 401
+QG ++ ++ NF IPPAS+ F S I++YD++ V K+ P+ + LQR
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTG-NPRGITLLQR 413
Query: 402 VGIGLAIATVAMIIAGIVEQRRLKYASFGG--EETS---SLSIFWQTPQYVLLGVSEAFV 456
+GIG+ + + MIIA I E+ RLK A+ G +T+ LSIF PQYVL+G+++AF+
Sbjct: 414 MGIGMILHILIMIIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFI 473
Query: 457 YVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLN 516
+A++EFF Q P +KSLG + + +S A+G ++ S++LS V +T K G+ GW+ NLN
Sbjct: 474 EIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGR-GWIQNNLN 532
Query: 517 DGHLDRFFFLSATVTAMNLGVFVVCARRYK 546
+ LD ++ A + +N +F+V R Y+
Sbjct: 533 ESRLDNYYMFFAVLNLLNFILFLVVIRFYE 562
|
Peptide transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 190/552 (34%), Positives = 309/552 (55%), Gaps = 41/552 (7%)
Query: 7 ERLRHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL 66
E + YTKDG++D G P + G W+ + ++V + +A+ G+ N+ ++ + L
Sbjct: 4 EEVGDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63
Query: 67 RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSF 126
Q ++SN + W+G+ +L+ ++GA++ D+ LGRY+T V A G++ L+ +
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123
Query: 127 LLRPHGCGKIG-QLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185
++P C + C+ S + A+F+ ++Y A+G G +P ++T GADQFD DPKEK
Sbjct: 124 GIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEK 183
Query: 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYR 245
K SF++++ ++ G LF+ TVLVY ++ W LG+ + ++ + L GT YR
Sbjct: 184 TQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYR 243
Query: 246 HFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLD 305
H P+G+P ++ ++VIVAS RK N M + E+ EYE G I T +FLD
Sbjct: 244 HKLPTGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLD 303
Query: 306 RAAIMTSADITTNEDQNPNQWRLCTVTQVEE---ML--------------------SLFV 342
RA++ T + ++W LCT T+VEE ML +LFV
Sbjct: 304 RASLKTGTN---------HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 343 EQGAAMNTGVS-NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQR 401
+QG ++ V+ +F IPPAS++ F +S I+LYD++ V + K P+ + LQR
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTG-NPRGITLLQR 413
Query: 402 VGIGLAIATVAMIIAGIVEQRRLKYASFGG--EETS---SLSIFWQTPQYVLLGVSEAFV 456
+GIGL + MI+A + E+ RLK A+ G +T L+IF PQ+VL+G++++F+
Sbjct: 414 MGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFL 473
Query: 457 YVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLN 516
VA++EFF Q P +KSLG + S +S AIG ++ S +LS V +T K G+ GW+ NLN
Sbjct: 474 EVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR-GWILNNLN 532
Query: 517 DGHLDRFFFLSA 528
+ LD ++ A
Sbjct: 533 ESRLDYYYLFFA 544
|
Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | ||||||
| 357469763 | 622 | Peptide transporter [Medicago truncatula | 0.921 | 0.832 | 0.596 | 0.0 | |
| 357469635 | 1313 | Peptide transporter PTR2 [Medicago trunc | 0.955 | 0.408 | 0.547 | 1e-178 | |
| 357458959 | 1282 | Peptide transporter PTR2 [Medicago trunc | 0.955 | 0.418 | 0.547 | 1e-177 | |
| 224138864 | 591 | predicted protein [Populus trichocarpa] | 0.967 | 0.920 | 0.544 | 1e-177 | |
| 224126323 | 598 | predicted protein [Populus trichocarpa] | 0.967 | 0.909 | 0.532 | 1e-173 | |
| 449461529 | 602 | PREDICTED: nitrate transporter 1.5-like | 0.975 | 0.910 | 0.529 | 1e-172 | |
| 255557635 | 598 | Peptide transporter, putative [Ricinus c | 0.983 | 0.924 | 0.522 | 1e-169 | |
| 357482335 | 605 | Peptide transporter PTR1 [Medicago trunc | 0.967 | 0.899 | 0.517 | 1e-167 | |
| 357476727 | 668 | Peptide transporter PTR1 [Medicago trunc | 0.951 | 0.800 | 0.530 | 1e-167 | |
| 356565426 | 597 | PREDICTED: nitrate transporter 1.5-like | 0.967 | 0.911 | 0.531 | 1e-167 |
| >gi|357469763|ref|XP_003605166.1| Peptide transporter [Medicago truncatula] gi|355506221|gb|AES87363.1| Peptide transporter [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/572 (59%), Positives = 419/572 (73%), Gaps = 54/572 (9%)
Query: 6 EERLRHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSV 65
EE + T+DGS+D++GKPAIK RTGGW+ +LLLVNQ L LAF GVEVN+VLFAK V
Sbjct: 26 EEESINPCTRDGSIDYYGKPAIKARTGGWKSASLLLVNQLLVALAFTGVEVNLVLFAKLV 85
Query: 66 LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQS 125
LRQ+NAE++NTFSRWMG+ Y SL+GAF+SDSYLGRYLTC+ FQ IGL+ LS +T
Sbjct: 86 LRQSNAESANTFSRWMGTTYFFSLIGAFISDSYLGRYLTCIIFQVVFNIGLVILSLSTHF 145
Query: 126 FLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185
LL+P GCGKIG LCDPHSP AI YISIYL ALG GA +PALATFG+DQFDEE+PKE+
Sbjct: 146 LLLKPKGCGKIGFLCDPHSPLHVAILYISIYLIALGNGAADPALATFGSDQFDEEEPKEE 205
Query: 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYR 245
KSKT F F+ETVL Y E G WVLGFWICAGC +F ++GTLRYR
Sbjct: 206 KSKTLF-------------FTETVLAYIETTGNWVLGFWICAGCGGFSFLIFMTGTLRYR 252
Query: 246 HFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLD 305
K S NP+SRF+QV V+S++KI ++P NG GL++V +E RR+ HT + L
Sbjct: 253 QMKTSRNPISRFAQVFVSSMKKIKFQVPANGEGLYDV--QEGSDPSVRRMHHTKGLRKL- 309
Query: 306 RAAIMTSADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFV 342
+NPN W+LCTVTQVEE MLSLFV
Sbjct: 310 ---------------KNPNPWKLCTVTQVEEVKCILRLLPVWLCTIFSSVVFIQMLSLFV 354
Query: 343 EQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRV 402
EQG+ MN F+IPPASMTAFDI+ST+AFI+L+D LIVPLY+KV KR PK PSELQR+
Sbjct: 355 EQGSTMNRKFYKFEIPPASMTAFDIISTSAFIMLFDILIVPLYVKVIKRDPKLPSELQRI 414
Query: 403 GIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQME 462
GIGL+I +A+I+AG+VE++RL++AS G+ETSSLSIFWQ PQYVL+GV+EAFVYVAQM
Sbjct: 415 GIGLSITILALIVAGLVERKRLEFASKDGKETSSLSIFWQIPQYVLVGVAEAFVYVAQMN 474
Query: 463 FFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDR 522
FF +Q P+GLKSLG+ LSMSS+A+G+YV + IL+VVM +T+ +G+PGWV PNLNDGHLD
Sbjct: 475 FFTAQAPDGLKSLGMGLSMSSSAVGSYVANTILTVVMKITSTHGRPGWVSPNLNDGHLDW 534
Query: 523 FFFLSATVTAMNLGVFVVCARRYKSISLQKQE 554
FFFLSA +T +NL ++VCARRYK I L+K+E
Sbjct: 535 FFFLSACLTGINLIFYIVCARRYKLIELEKRE 566
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469635|ref|XP_003605102.1| Peptide transporter PTR2 [Medicago truncatula] gi|355506157|gb|AES87299.1| Peptide transporter PTR2 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 309/564 (54%), Positives = 403/564 (71%), Gaps = 27/564 (4%)
Query: 5 IEERLRHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKS 64
+EE ++ TKDGS+DF+GKPA+K+ +G WR TLLLVNQGL +AFAGVE N+V+F K
Sbjct: 13 VEEEGINSCTKDGSVDFYGKPALKNSSGRWRSATLLLVNQGLVAVAFAGVEANLVIFCKL 72
Query: 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124
VL+QTN EA+NTFS WMG+ Y SL+GAFLSDSYLGRYLTC+ FQ IIGL+ LS +T
Sbjct: 73 VLKQTNVEAANTFSIWMGTTYFFSLIGAFLSDSYLGRYLTCIIFQLVFIIGLVALSLSTH 132
Query: 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184
FLL+PH C +IG+LC+ + + +FY+SIYL ALG G +PAL T GADQFDEE+PKE
Sbjct: 133 LFLLKPHRCEQIGELCESDTQNQFPLFYLSIYLIALGSGVSDPALPTLGADQFDEEEPKE 192
Query: 185 KKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRY 244
++SK S Y YFY+ALNLG L +ET+L Y E G+WVLGFWIC C ++F LLSGTLRY
Sbjct: 193 QRSKASIYGYFYVALNLGSLVAETILAYIETTGHWVLGFWICTCCAGVSFLVLLSGTLRY 252
Query: 245 RHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFL 304
RH+K GNP S+FSQ+IV L+K+ ++ + G L+ ++ + RRI H N +F
Sbjct: 253 RHYKTFGNPFSKFSQLIVPFLKKMKFQIQSIGEDLYHDGIQG-DDTRVRRIHHANGLRFF 311
Query: 305 DRAAIMT--SADITTNEDQNPNQWRLCTVTQVE-----------------------EMLS 339
DRA I++ + ++ + Q +W ++TQ E ++LS
Sbjct: 312 DRAGIVSDEATEMLLGKGQKSYKWNFNSLTQSEAVTYILRVLPIWICTIFSSSVFIQLLS 371
Query: 340 LFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSEL 399
LFVEQG+ M+ FQIPP+SMTAFDI+ST+ FI+L D LI+PLY+KV KR PK PSEL
Sbjct: 372 LFVEQGSTMDRTFFKFQIPPSSMTAFDIISTSTFIILLDVLIIPLYIKVMKRPPKLPSEL 431
Query: 400 QRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVA 459
Q +GIGL I + +I+AG VEQRRL +AS G+E SSLSIFW PQY+LLG++EAFVYVA
Sbjct: 432 QSIGIGLCITIITLIVAGFVEQRRLSFASNDGKEMSSLSIFWLIPQYMLLGIAEAFVYVA 491
Query: 460 QMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTK-NGKPGWVPPNLNDG 518
QM FF SQ P+GL+SLG+ LSM S+A+G YV + L+VV +T+ G+ GWV PNLNDG
Sbjct: 492 QMNFFTSQTPDGLESLGMGLSMFSSALGCYVGNFFLTVVNKITSSGQGQHGWVSPNLNDG 551
Query: 519 HLDRFFFLSATVTAMNLGVFVVCA 542
HLDRFFFL+A + A++L V++VC+
Sbjct: 552 HLDRFFFLTAFLIAIDLIVYIVCS 575
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458959|ref|XP_003599760.1| Peptide transporter PTR2 [Medicago truncatula] gi|355488808|gb|AES70011.1| Peptide transporter PTR2 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 309/564 (54%), Positives = 403/564 (71%), Gaps = 27/564 (4%)
Query: 5 IEERLRHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKS 64
+EE ++ TKDGS+DF+GKPA+K+ +G WR TLLLVNQGL +AFAGVE N+V+F K
Sbjct: 13 VEEEGINSCTKDGSVDFYGKPALKNSSGRWRSATLLLVNQGLVAVAFAGVEANLVIFCKL 72
Query: 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124
VL+QTN EA+NTFS WMG+ Y SL+GAFLSDSYLGRYLTC+ FQ IIGL+ LS +T
Sbjct: 73 VLKQTNVEAANTFSIWMGTTYFFSLIGAFLSDSYLGRYLTCIIFQLVFIIGLVALSLSTH 132
Query: 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184
FLL+PH C +IG+LC+ + + +FY+SIYL ALG G +PAL T GADQFDEE+PKE
Sbjct: 133 LFLLKPHRCEQIGELCESDTQNQFPLFYLSIYLIALGSGVSDPALPTLGADQFDEEEPKE 192
Query: 185 KKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRY 244
++SK S Y YFY+ALNLG L +ET+L Y E G+WVLGFWIC C ++F LLSGTLRY
Sbjct: 193 QRSKASIYGYFYVALNLGSLVAETILAYIETTGHWVLGFWICTCCAGVSFLVLLSGTLRY 252
Query: 245 RHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFL 304
RH+K GNP S+FSQ+IV L+K+ ++ + G L+ ++ + RRI H N +F
Sbjct: 253 RHYKTFGNPFSKFSQLIVPFLKKMKFQIQSIGEDLYHDGIQG-DDTRVRRIHHANGLRFF 311
Query: 305 DRAAIMT--SADITTNEDQNPNQWRLCTVTQVE-----------------------EMLS 339
DRA I++ + ++ + Q +W ++TQ E ++LS
Sbjct: 312 DRAGIVSDEATEMLLGKGQKSYKWNFNSLTQSEAVTYILRVLPIWICTIFSSSVFIQLLS 371
Query: 340 LFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSEL 399
LFVEQG+ M+ FQIPP+SMTAFDI+ST+ FI+L D LI+PLY+KV KR PK PSEL
Sbjct: 372 LFVEQGSTMDRTFFKFQIPPSSMTAFDIISTSTFIILLDVLIIPLYIKVMKRPPKLPSEL 431
Query: 400 QRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVA 459
Q +GIGL I + +I+AG VEQRRL +AS G+E SSLSIFW PQY+LLG++EAFVYVA
Sbjct: 432 QSIGIGLCITIITLIVAGFVEQRRLSFASNDGKEMSSLSIFWLIPQYMLLGIAEAFVYVA 491
Query: 460 QMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTK-NGKPGWVPPNLNDG 518
QM FF SQ P+GL+SLG+ LSM S+A+G YV + L+VV +T+ G+ GWV PNLNDG
Sbjct: 492 QMNFFTSQTPDGLESLGMGLSMFSSALGCYVGNFFLTVVNKITSSGQGQHGWVSPNLNDG 551
Query: 519 HLDRFFFLSATVTAMNLGVFVVCA 542
HLDRFFFL+A + A++L V++VC+
Sbjct: 552 HLDRFFFLTAFLIAIDLIVYIVCS 575
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138864|ref|XP_002326709.1| predicted protein [Populus trichocarpa] gi|222834031|gb|EEE72508.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 311/571 (54%), Positives = 401/571 (70%), Gaps = 27/571 (4%)
Query: 10 RHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT 69
R T DG++D+HG+PAIKD++G W G ++L+NQGLA LAF GV VN+VLF VL+Q+
Sbjct: 9 REECTFDGTVDWHGRPAIKDKSGQWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQS 68
Query: 70 NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLR 129
NA+A+N S+W G++Y+ SL+GAFLSDSY GRY TC FQ +IGL+ LS ++ FL+R
Sbjct: 69 NADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLVILSLSSYLFLIR 128
Query: 130 PHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189
P GCG C HS E ++FY+SIYL ALG G +P +ATFGADQFDEEDP+E SK
Sbjct: 129 PKGCGNELTPCGSHSSMEVSLFYLSIYLVALGNGGYQPNIATFGADQFDEEDPREGHSKV 188
Query: 190 SFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKP 249
+F+SYFY+ALNLG LFS T+L Y E+ G W LGFW AG A L GT RYRHFKP
Sbjct: 189 AFFSYFYLALNLGSLFSNTILGYFEDEGVWALGFWASAGSAFAALVLFLGGTSRYRHFKP 248
Query: 250 SGNPLSRFSQVIVASLRKINLEMPTNG-GGLFEVHVREYEANGTRRILHTNDFKFLDRAA 308
SGNPLSRF QVI+A+++K LEMP +G L+ VH ++ NG R+ILHT+ FKFLDRAA
Sbjct: 249 SGNPLSRFCQVIIAAMKKWKLEMPRDGEEELYNVHAKDCSMNGNRKILHTDGFKFLDRAA 308
Query: 309 IMTSADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQG 345
++S DI + N WRLC +TQVEE M SLFVEQG
Sbjct: 309 FISSRDIDDQKRGCRNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQG 368
Query: 346 AAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIG 405
AAM T VSNF+IPPASM++FDI+S FI LY +++ PL +V K K +ELQR+G+G
Sbjct: 369 AAMKTTVSNFKIPPASMSSFDILSVAFFIFLYRRVLDPLVSRVKKTGSKGLTELQRMGVG 428
Query: 406 LAIATVAMIIAGIVEQRRLKYA---SFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQME 462
L IA VAMI AG+VE RL+YA E +SS+SIFWQ PQY L+G SE F+YV Q+E
Sbjct: 429 LVIAIVAMISAGLVECYRLRYARKDCTHCEGSSSMSIFWQVPQYALIGASEVFMYVGQLE 488
Query: 463 FFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDR 522
FF +Q P+GLKS G AL M+S ++G YV S+++++VM ++T++ PGW+P NLN GHLDR
Sbjct: 489 FFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDHMPGWIPGNLNKGHLDR 548
Query: 523 FFFLSATVTAMNLGVFVVCARRYKSISLQKQ 553
F+FL AT+T ++L V++ CAR YKSI L+ +
Sbjct: 549 FYFLLATLTTIDLVVYIACARWYKSIQLEGK 579
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126323|ref|XP_002329526.1| predicted protein [Populus trichocarpa] gi|222870235|gb|EEF07366.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/571 (53%), Positives = 399/571 (69%), Gaps = 27/571 (4%)
Query: 14 TKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEA 73
T DG++D+HG+PAIK ++G W G ++L+NQGLA LAF GV VN+VLF VL+Q+NA+A
Sbjct: 20 TFDGTVDWHGRPAIKAKSGQWAAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQSNADA 79
Query: 74 SNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133
+N S+W G++Y+ SL+GAFLSDSY GRY TC FQ +IGL+ LS A+ FL+RP GC
Sbjct: 80 ANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAVFQVIFVIGLVILSLASHLFLIRPKGC 139
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G C HS E ++FY+SIYL ALG G +P +ATFGADQFDE+DP+E SK +F+S
Sbjct: 140 GDELTPCGSHSSMEVSLFYLSIYLIALGNGGYQPNIATFGADQFDEDDPREGYSKVAFFS 199
Query: 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNP 253
YFY+ALNLG LFS T+L Y E+ G W LGFW+ AG A L GT RYRHFKPSGNP
Sbjct: 200 YFYLALNLGSLFSNTILGYFEDEGMWALGFWMSAGSAFAALVLFLGGTARYRHFKPSGNP 259
Query: 254 LSRFSQVIVASLRKINLEMPTNG-GGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTS 312
LSRF QVI+A+++K +EMP +G L++V ++ NG R+ILHT+ FKFLDRAA ++S
Sbjct: 260 LSRFGQVIIAAMKKCRVEMPPDGEEELYDVDRKDCSMNGNRKILHTDGFKFLDRAAFISS 319
Query: 313 ADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGAAMN 349
DI + N WRLC +TQVEE M SLFVEQGAAM
Sbjct: 320 RDIDDQKRGCRNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMK 379
Query: 350 TGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIA 409
T +SNF+IPPASM+ FDI+S FI LY +++ PL + K +ELQR+G+GL IA
Sbjct: 380 TTISNFKIPPASMSTFDILSVAFFIFLYRRVLDPLVSSFKQTSSKGLTELQRMGVGLVIA 439
Query: 410 TVAMIIAGIVEQRRLKYASFG---GEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFAS 466
+AM+ AG+VE RLKYA E +SSLSIFWQ PQY L+G SE F+YV Q+EFF +
Sbjct: 440 IMAMVSAGLVECYRLKYARKDCKHCEGSSSLSIFWQAPQYALIGASEVFMYVGQLEFFNA 499
Query: 467 QIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFL 526
Q P+GLKS G AL M+S ++G YV S+++++V+ ++T++ PGW+P NLN GHLDRF+FL
Sbjct: 500 QTPDGLKSFGSALCMTSISLGNYVSSLLVTMVVKISTEDHMPGWIPGNLNTGHLDRFYFL 559
Query: 527 SATVTAMNLGVFVVCARRYKSISLQKQEGES 557
A +T ++L V++ CAR YKSI L+K+ E+
Sbjct: 560 LAGLTTIDLVVYMACARWYKSIKLEKKCEEN 590
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461529|ref|XP_004148494.1| PREDICTED: nitrate transporter 1.5-like [Cucumis sativus] gi|449523169|ref|XP_004168597.1| PREDICTED: LOW QUALITY PROTEIN: nitrate transporter 1.5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 304/574 (52%), Positives = 394/574 (68%), Gaps = 26/574 (4%)
Query: 10 RHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT 69
R T DG++D+HG+PAI+ ++GGW G ++L+NQGLA LAF GV VN+VLF VL+Q
Sbjct: 21 REVCTLDGTIDWHGQPAIRSKSGGWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQN 80
Query: 70 NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLR 129
NA+A+N+ S+W G++Y+ SL+GAFLSDSY GRY TC FQ +IGL+ LS +Q FL++
Sbjct: 81 NADAANSVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQIIFVIGLVSLSITSQLFLIK 140
Query: 130 PHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189
P GCG C+ HS A+FY+SIYL ALG G +P +ATFGADQFDEED E SK
Sbjct: 141 PKGCGDEDTPCESHSRLGNALFYLSIYLIALGNGGYQPNIATFGADQFDEEDSTEGHSKV 200
Query: 190 SFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKP 249
+F+SYFY+ALNLG LFS T+L Y E+ G W LGFW+ AG A L G RYRHFKP
Sbjct: 201 AFFSYFYLALNLGSLFSNTILGYFEDEGVWALGFWVSAGSAFAALVLFLCGIPRYRHFKP 260
Query: 250 SGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAI 309
SGNPLSRF QVIVA+ +K ++MP +G L+ + ++ N RRILHT+ FKFLDRAA
Sbjct: 261 SGNPLSRFCQVIVAAAKKSTVKMPASGDELYSLDAKDCSMNRGRRILHTHGFKFLDRAAY 320
Query: 310 MTSADITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGA 346
++S D+ N WRLC +TQVEE M SLFVEQGA
Sbjct: 321 ISSRDLDNQGRGIGNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGA 380
Query: 347 AMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGL 406
AM T VSNF IPPASM++FDI+S FI LY +++ PL K+ K K +ELQR+GIGL
Sbjct: 381 AMKTVVSNFHIPPASMSSFDILSVAVFIFLYRRVLDPLAGKLRKSDSKGLTELQRMGIGL 440
Query: 407 AIATVAMIIAGIVEQRRLKYAS---FGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEF 463
IA +AM+ AGIVE RLKYA E +SSLSIFWQ PQY +G SE F+YV Q+EF
Sbjct: 441 IIAVMAMVSAGIVECYRLKYAKGDCTHCEGSSSLSIFWQVPQYAFIGASEVFMYVGQLEF 500
Query: 464 FASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRF 523
F +Q P+GLKS G AL M+S ++G YV S+++++VM ++T++ PGW+P NLN GHLDRF
Sbjct: 501 FNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDHMPGWIPGNLNRGHLDRF 560
Query: 524 FFLSATVTAMNLGVFVVCARRYKSISLQKQEGES 557
+FL A +TA++ V+++CAR YK I L+ + E+
Sbjct: 561 YFLLAGLTAIDFAVYIMCARWYKCIKLEGKCEEN 594
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557635|ref|XP_002519847.1| Peptide transporter, putative [Ricinus communis] gi|223540893|gb|EEF42451.1| Peptide transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 304/582 (52%), Positives = 405/582 (69%), Gaps = 29/582 (4%)
Query: 1 LNLSIEERLR---HAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVN 57
L + E++L+ T DG++D+HG+PA++ ++G W G ++L+NQGLA LAF GV VN
Sbjct: 4 LEMYKEDKLKPDQDECTLDGTVDWHGQPAMRKKSGKWVAGIIILLNQGLATLAFFGVGVN 63
Query: 58 MVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117
+VLF VL+Q NA+A+N S+W G++Y+ SL+GAFLSDSY GRY TC FQ +IGL+
Sbjct: 64 LVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLV 123
Query: 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQF 177
LS ++ FL+RP GCG C HS E FY+SIYL ALG G +P +ATFGADQF
Sbjct: 124 FLSLSSYLFLIRPKGCGDELTPCGSHSSMEVGFFYLSIYLVALGNGGYQPNIATFGADQF 183
Query: 178 DEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237
DEEDPKE SK +F+SYFY+ALNLG LFS T+L Y E+ G W LGFW AG + A +
Sbjct: 184 DEEDPKEGHSKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSALAALALF 243
Query: 238 LSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILH 297
L GT RYRHFKP+GNPLSRF QVI+A+ +K ++ MP++ L++V+ + ANG RRIL+
Sbjct: 244 LGGTARYRHFKPTGNPLSRFCQVIIAATKKWSVNMPSDAEDLYDVNGEDCSANGNRRILY 303
Query: 298 TNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE--------------------- 336
T+ FKFLDRAA ++S D+ + + N WRLC +TQVEE
Sbjct: 304 THGFKFLDRAAFISSRDMDEQKQGSQNPWRLCPITQVEEVKCILRLLPIWLCTILYSVVF 363
Query: 337 --MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPK 394
M SLFVEQGAAM T VSNF+IPPASM++FDI+S FI LY +++ PL ++ + K
Sbjct: 364 TQMASLFVEQGAAMKTTVSNFRIPPASMSSFDILSVALFIFLYRRVLDPLISRIRNSKSK 423
Query: 395 TPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFG---GEETSSLSIFWQTPQYVLLGV 451
+ELQR+GIGL IA +AM+ AGIVE RLKYA+ E +SSLSIFWQ PQY L+G
Sbjct: 424 GLTELQRMGIGLVIAIMAMVSAGIVECYRLKYANKDCTRCEGSSSLSIFWQVPQYALIGA 483
Query: 452 SEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWV 511
SE F+YV Q+EFF +Q P+GLKS G AL M+S ++G YV S+++++VM ++T++ PGW+
Sbjct: 484 SEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDHMPGWI 543
Query: 512 PPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQ 553
P NLN GHLDRF+FL A +T ++L V++ CAR YK I L+ +
Sbjct: 544 PGNLNKGHLDRFYFLLAGLTTIDLVVYMACARWYKCIKLEGK 585
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357482335|ref|XP_003611453.1| Peptide transporter PTR1 [Medicago truncatula] gi|355512788|gb|AES94411.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 295/570 (51%), Positives = 391/570 (68%), Gaps = 26/570 (4%)
Query: 14 TKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEA 73
T DGS+DF+G+PAI+ ++G W GT++L+NQ LA LAF G+ VN+V+F V+ Q NAEA
Sbjct: 28 TLDGSVDFNGRPAIRAKSGRWSAGTIILLNQCLATLAFFGIGVNLVVFLTRVVGQNNAEA 87
Query: 74 SNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133
+N S+W G++Y+ SL+GAFLSDSY GRY TC FQ +IGL+ LS ++ FL++P GC
Sbjct: 88 ANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAVFQVIFVIGLMSLSLSSYLFLIKPKGC 147
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G C HS E +FY+SIYL ALG G +P +ATFGADQFDEE KE +K +F+S
Sbjct: 148 GNESIQCGKHSSWEMGMFYLSIYLIALGNGGYQPNIATFGADQFDEEHSKEGHNKVAFFS 207
Query: 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNP 253
YFY+ALN G LFS T+LVY E+ G W LGFW+ AGC +A L GT +YRHFKPSGNP
Sbjct: 208 YFYLALNFGQLFSNTILVYFEDEGMWALGFWLSAGCAFIALILFLVGTPKYRHFKPSGNP 267
Query: 254 LSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSA 313
L+RF QV+VA+ RK+ +EMP+NG L+ + +E + R+ILHT+ FKFLDRAAI++S
Sbjct: 268 LARFCQVLVAASRKVKVEMPSNGDDLYNMDTKESSTDVNRKILHTHGFKFLDRAAIISSR 327
Query: 314 DITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGAAMNT 350
D + N WRLC V+QVEE M SLFVEQG AM T
Sbjct: 328 DHDNQKGTCSNPWRLCPVSQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGDAMKT 387
Query: 351 GVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIAT 410
V NF++PPASM+ FDI+S FI Y +++ P K+ K K +ELQR+G+GL IA
Sbjct: 388 TVYNFRVPPASMSCFDIISVAVFIFFYRRILDPFVGKLKKSDSKGLTELQRMGVGLVIAV 447
Query: 411 VAMIIAGIVEQRRLKYASFGGEE---TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQ 467
+AM+ AGIVE RLK+A +S+LSIFWQ PQY L+G SE F+YV Q+EFF +Q
Sbjct: 448 IAMVSAGIVESYRLKHADQDCRHCKGSSTLSIFWQIPQYALIGASEVFMYVGQLEFFNAQ 507
Query: 468 IPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLS 527
P+GLKS G AL M+S ++G YV S+++SVVM ++T++ PGW+P NLN GHLDRF+FL
Sbjct: 508 TPDGLKSFGSALCMTSISLGNYVSSLLVSVVMKISTEDHMPGWIPVNLNKGHLDRFYFLL 567
Query: 528 ATVTAMNLGVFVVCARRYKSISLQKQEGES 557
A +T+M+L ++ CA+ YKSI L ++ E+
Sbjct: 568 AALTSMDLIAYIACAKWYKSIQLGEKRKEN 597
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476727|ref|XP_003608649.1| Peptide transporter PTR1 [Medicago truncatula] gi|355509704|gb|AES90846.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 297/560 (53%), Positives = 382/560 (68%), Gaps = 25/560 (4%)
Query: 14 TKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEA 73
T DGS+D+HG+P+I+ +G W GT++L+NQGLA LAF GV VN+VLF VL Q NA A
Sbjct: 96 TLDGSVDWHGRPSIRATSGRWFAGTIILLNQGLATLAFFGVGVNLVLFLTRVLGQDNAAA 155
Query: 74 SNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133
+N S+W G++Y+ SL+GAFLSDSY GRY TC FQ + GL+ LS T LLRP GC
Sbjct: 156 ANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQGIFVTGLVSLSVTTYLALLRPKGC 215
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G C HS E +FY+SIYL ALG G +P +ATFGADQFDE+ KE SK +F+S
Sbjct: 216 GNGKLECGEHSSLEMGMFYLSIYLIALGNGGYQPNIATFGADQFDEDHSKESYSKVAFFS 275
Query: 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNP 253
YFY+ALNLG LFS T+L Y E+ G W LGFW AG LA L GT +YRHFKP GNP
Sbjct: 276 YFYLALNLGSLFSNTILGYFEDEGLWALGFWASAGSAFLALVLFLVGTPKYRHFKPCGNP 335
Query: 254 LSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSA 313
LSRF QV A+ RK+ ++M +NG L+ + +E N R+ILHT+ FKFLDRAA +TS
Sbjct: 336 LSRFCQVFFAASRKLGVQMTSNGDDLYVIDEKESSNNSNRKILHTHGFKFLDRAAYITSR 395
Query: 314 DITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGAAMNT 350
D+ + N W LC +TQVEE M SLFVEQGAAM T
Sbjct: 396 DLEVQKGGQHNPWYLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMKT 455
Query: 351 GVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIAT 410
+S+F+IPPASM++FDI+S FI Y +++ PL K+ K K +ELQR+GIGL IA
Sbjct: 456 TISSFKIPPASMSSFDILSVAIFIFFYRRVLDPLVGKLKKSSSKGLTELQRMGIGLVIAI 515
Query: 411 VAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPN 470
+AM+ AGIVE RLKYA G +TSSLSIFWQ PQY L+G SE F+YV Q+EFF +Q P+
Sbjct: 516 IAMVTAGIVECYRLKYAKQG--DTSSLSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPD 573
Query: 471 GLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATV 530
GLKS G AL M+S ++G YV S+I+S+VM ++T++ PGW+P NLN GHLDRFFFL A +
Sbjct: 574 GLKSFGSALCMTSISLGNYVSSLIVSIVMKISTEDHMPGWIPGNLNRGHLDRFFFLLAVL 633
Query: 531 TAMNLGVFVVCARRYKSISL 550
T+++L ++ CA+ +++I +
Sbjct: 634 TSLDLIAYIACAKWFQNIQM 653
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565426|ref|XP_003550941.1| PREDICTED: nitrate transporter 1.5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 303/570 (53%), Positives = 393/570 (68%), Gaps = 26/570 (4%)
Query: 14 TKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEA 73
T DGS+D+HG+PAI+ ++G W GT++L+NQGLA LAF GV VN+VLF V+ Q NAEA
Sbjct: 20 TLDGSVDWHGRPAIRAKSGRWVAGTIVLLNQGLATLAFFGVGVNLVLFLTRVMGQDNAEA 79
Query: 74 SNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133
+N S+W G++Y+ SL+GAFLSDSY GRY TC FQ +IGL+ LS ++ L+RP GC
Sbjct: 80 ANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLVSLSLSSYLSLIRPKGC 139
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G C HS E +FY+SIYL ALG G +P +ATFGADQFDEE KE SK +F+S
Sbjct: 140 GNETIPCGKHSSLEMGMFYLSIYLIALGNGGYQPNIATFGADQFDEEHSKEGYSKVAFFS 199
Query: 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNP 253
YFY+ALNLG LFS T+L Y E+ G W LGFW+ AG A L GT RYRHFKPSGNP
Sbjct: 200 YFYLALNLGSLFSNTILGYFEDEGLWALGFWVSAGSAFAALVLFLLGTPRYRHFKPSGNP 259
Query: 254 LSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSA 313
LSRFSQV+VA+ RK +M +NG L+ + E NG R+ILHT FKFLDRAAI++S
Sbjct: 260 LSRFSQVLVAASRKWRAQMASNGEDLYVMDENESPTNGNRKILHTEGFKFLDRAAIISSR 319
Query: 314 DITTNEDQNPNQWRLCTVTQVEE-----------------------MLSLFVEQGAAMNT 350
D+ + N WRLC +TQVEE M SLFVEQGAAM T
Sbjct: 320 DLEDQKSGVYNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMKT 379
Query: 351 GVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIAT 410
+S+F+IPPASM++FDI+S FI Y ++I PL ++ K+ K +ELQR+GIGL IA
Sbjct: 380 TISHFRIPPASMSSFDILSVAVFIFFYRRVIDPLVGRLKKKSSKGLTELQRMGIGLVIAV 439
Query: 411 VAMIIAGIVEQRRLKYASFGGEE---TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQ 467
+AM+ AGIVE RLKYA TSSL+IFWQ PQY L+G SE F+YV Q+EFF +Q
Sbjct: 440 MAMVSAGIVECYRLKYADPVCPHCSGTSSLTIFWQIPQYTLIGASEVFMYVGQLEFFNAQ 499
Query: 468 IPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLS 527
P+GLKS G AL M+S ++G YV S+++S+VM ++T++ PGW+P NLN GHLDRF+FL
Sbjct: 500 TPDGLKSFGSALCMTSISLGNYVSSLLVSIVMKISTEDHMPGWIPGNLNRGHLDRFYFLL 559
Query: 528 ATVTAMNLGVFVVCARRYKSISLQKQEGES 557
A +T+++L +++ CA+ +KSI L+ + E+
Sbjct: 560 AILTSIDLVLYIACAKWFKSIQLEGKYEEN 589
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | ||||||
| TAIR|locus:2033776 | 614 | NRT1.5 "nitrate transporter 1. | 0.576 | 0.527 | 0.522 | 1.9e-151 | |
| TAIR|locus:2119058 | 589 | NRT1.8 "NITRATE TRANSPORTER 1. | 0.571 | 0.544 | 0.524 | 3e-142 | |
| TAIR|locus:2183194 | 609 | AT5G19640 [Arabidopsis thalian | 0.912 | 0.842 | 0.471 | 8e-124 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.578 | 0.570 | 0.397 | 1.1e-114 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.569 | 0.547 | 0.401 | 1.1e-110 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.567 | 0.559 | 0.395 | 4.1e-102 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.564 | 0.549 | 0.360 | 4.9e-91 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.923 | 0.879 | 0.352 | 9.9e-87 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.556 | 0.530 | 0.366 | 1.5e-85 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.918 | 0.946 | 0.333 | 3.7e-80 |
| TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.9e-151, Sum P(2) = 1.9e-151
Identities = 171/327 (52%), Positives = 226/327 (69%)
Query: 14 TKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEA 73
T+DG++D++G+P+I+ +G W G ++L+NQGLA LAF GV VN+VLF VL+Q NA+A
Sbjct: 21 TRDGTVDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADA 80
Query: 74 SNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133
+N S+W G++Y+ SL+GAFLSDSY GRY TC FQ +IGL LS ++ FL+RP GC
Sbjct: 81 ANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGC 140
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G C HS E +FY SIYL ALG G +P +AT GADQFDEE PKE SK +F+S
Sbjct: 141 GDEVTPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFS 200
Query: 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNP 253
YFY+ALNLG LFS T+L Y E+ G W LGFW G I+ L GT RYR+FKP+GNP
Sbjct: 201 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNP 260
Query: 254 LSRFSQVIVASLRKINLEMPTNGGG-LFE--VHVREYEANGTRRILHTNDFKFLDRAAIM 310
LSRF QV+VA+ +K ++E P G +++ + N RRI+HT++FKFLD+AA +
Sbjct: 261 LSRFCQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYI 320
Query: 311 TSADITTNEDQNPNQWRLCTVTQVEEM 337
T+ D+ + + N WRLC VTQVEE+
Sbjct: 321 TARDLDDKKQDSVNPWRLCPVTQVEEV 347
|
|
| TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
Identities = 171/326 (52%), Positives = 215/326 (65%)
Query: 14 TKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEA 73
T+DGS+D HG PAI+ TG W L+LVNQGLA LAF GV VN+VLF V+ Q NAEA
Sbjct: 12 TQDGSVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEA 71
Query: 74 SNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133
+N S+W G++Y+ SL+GAFLSDSY GRY TC FQA + GL+ LS +T + LL P GC
Sbjct: 72 ANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGC 131
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G C PHS +T +FY+S+YL ALG G +P +ATFGADQFD ED E SK +F+S
Sbjct: 132 GVEDSPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFS 191
Query: 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNP 253
YFY+ALNLG LFS TVL Y E+ G W LGFW AG L GT +YRHF P +P
Sbjct: 192 YFYLALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESP 251
Query: 254 LSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSA 313
SRF QV+VA+ RK +++ L++ E + G ++ILHT F+FLDRAAI+T
Sbjct: 252 WSRFCQVLVAATRKAKIDVHHEELNLYD---SETQYTGDKKILHTKGFRFLDRAAIVTPD 308
Query: 314 DITTNEDQNP--NQWRLCTVTQVEEM 337
D + + WRLC+VTQVEE+
Sbjct: 309 DEAEKVESGSKYDPWRLCSVTQVEEV 334
|
|
| TAIR|locus:2183194 AT5G19640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 262/556 (47%), Positives = 353/556 (63%)
Query: 30 RTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSL 89
+ GGW +LLVNQGLA LAF GV VN+VLF V+ Q NAEA+N S+W G++Y+ SL
Sbjct: 59 KNGGWTNAIILLVNQGLATLAFFGVGVNLVLFLTRVMGQGNAEAANNVSKWTGTVYMFSL 118
Query: 90 MGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQL-CDPHSPAET 148
+GAFLSDSY GRYLTC FQ +IG+ LSF + FL++P GCG G L C+P S
Sbjct: 119 VGAFLSDSYWGRYLTCTIFQVIFVIGVGLLSFVSWFFLIKPRGCGD-GDLECNPPSSLGV 177
Query: 149 AIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208
AIFY+S+YL A G G +P LATFGADQ D++ K SK +F+SYFY ALN+G LFS T
Sbjct: 178 AIFYLSVYLVAFGYGGHQPTLATFGADQLDDD----KNSKAAFFSYFYFALNVGALFSNT 233
Query: 209 VLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKI 268
+LVY E+ G W GF + G I+A + L+ T +YR+ KP GNPL R +QV VA+ RK
Sbjct: 234 ILVYFEDKGLWTEGFLVSLGSAIVALVAFLAPTRQYRYVKPCGNPLPRVAQVFVATARKW 293
Query: 269 NLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRL 328
++ P + L+E+ E G+R+I H+ F FLDRAA++T D N ++ N WRL
Sbjct: 294 SVVRPGDPHELYELEGPESAIKGSRKIFHSTKFLFLDRAAVITEND--RNGTRS-NAWRL 350
Query: 329 CTVTQVEE-----------------------MLSLFVEQGAAMNTGVSNFQIPPASMTAF 365
C+VTQVEE M SLFVEQG MN V F IP ASM+ F
Sbjct: 351 CSVTQVEEAKCVMKLLPIWLCTIIYSVIFTQMASLFVEQGDVMNAYVGKFHIPAASMSVF 410
Query: 366 DIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLK 425
DI S +Y +I P Y++ P+EL R+GIGL I +AM+ AG+ E +RLK
Sbjct: 411 DIFSVFVSTGIYRHIIFP-YVR--------PTELMRMGIGLIIGIMAMVAAGLTEIQRLK 461
Query: 426 YASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTA 485
G++ S L+I WQ PQYVL+G SE F+YV Q+EFF Q P+GLK+LG +L M+S A
Sbjct: 462 RV-VPGQKESELTILWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGLKNLGSSLCMASMA 520
Query: 486 IGTYVCSMILSVVMVLTTKN-GKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544
+G YV S+++++VM +T + PGW+P NLN+GH+DRF+FL A + A++ V+++ A+
Sbjct: 521 LGNYVSSLMVNIVMAITKRGENSPGWIPENLNEGHMDRFYFLIAALAAIDFVVYLIFAKW 580
Query: 545 YKSISLQKQEGESAAG 560
Y+ IS + + +G
Sbjct: 581 YQPISHDEDSIKGGSG 596
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 1.1e-114, Sum P(2) = 1.1e-114
Identities = 132/332 (39%), Positives = 212/332 (63%)
Query: 10 RHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT 69
+ YT+DG++D H PA K++TG W+ +L N+ LA+ G+ N+V + +S L Q
Sbjct: 4 KDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQG 63
Query: 70 NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLR 129
NA A+N + W G+ Y++ L+GAF++D+YLGRY T TF + G+ L+ + L+
Sbjct: 64 NATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLK 123
Query: 130 PHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189
P C C P+S ++TA+F++++Y+ ALG G +P +++FGADQFDE D EK K+
Sbjct: 124 PGNCN--ADTCHPNS-SQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180
Query: 190 SFYSYFYIALNLGCLFSETVLVYAE-NMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFK 248
SF+++FY ++N+G L + TVLV+ + N+G W GF + ++A G+ YR +
Sbjct: 181 SFFNWFYFSINVGALIAATVLVWIQMNVG-WGWGFGVPTVAMVIAVCFFFFGSRFYRLQR 239
Query: 249 PSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAA 308
P G+PL+R QVIVA+ RKI++++P + LFE E G+R+++HT++ KF D+AA
Sbjct: 240 PGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAA 299
Query: 309 IMTSADITTNEDQNPNQWRLCTVTQVEEMLSL 340
+ + +D + + NP WRLC+VTQVEE+ S+
Sbjct: 300 VESQSDSIKDGEVNP--WRLCSVTQVEELKSI 329
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 657 (236.3 bits), Expect = 1.1e-110, Sum P(2) = 1.1e-110
Identities = 131/326 (40%), Positives = 204/326 (62%)
Query: 13 YTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE 72
Y +DGS+DF+G P +K++TG W+ +L N+ LA+ G+ N++ + + L Q N
Sbjct: 24 YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83
Query: 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHG 132
A+ + W G+ YL+ L+GA L+D+Y GRY T F IG+ L+ + L+P
Sbjct: 84 AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE 143
Query: 133 CGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192
C IG C +PA+ A+F+ +YL ALG G +P +++FGADQFD+ D +E+ K SF+
Sbjct: 144 C--IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 193 SYFYIALNLGCLFSETVLVYA-ENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSG 251
++FY ++N+G L S ++LV+ EN G W LGF I LA +S GT YR KP G
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRG-WGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGG 260
Query: 252 NPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMT 311
+P++R SQV+VAS RK ++++P + L+E + G+R+I HT+D ++LD+AA+++
Sbjct: 261 SPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 312 SADITTNEDQNPNQWRLCTVTQVEEM 337
+ + + D + N WRLCTVTQVEE+
Sbjct: 321 EEE-SKSGDYS-NSWRLCTVTQVEEL 344
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.1e-102, Sum P(2) = 4.1e-102
Identities = 131/331 (39%), Positives = 200/331 (60%)
Query: 13 YTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE 72
YTKDG+LD H KPA K++TG W+ +L + LA+ G+ N++ + + + N
Sbjct: 8 YTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVS 67
Query: 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHG 132
AS + S W G+ Y + L+GAF++D+YLGRY T +F I G+ L+ + L P
Sbjct: 68 ASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT- 126
Query: 133 CGKIGQLCDPHSPA-ETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191
C G+ C H+ A +TAI +I++YL ALG G +P +++FGADQFD+ D KEK+SK+SF
Sbjct: 127 CS--GETC--HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSF 182
Query: 192 YSYFYIALNLGCLFSETVLVYAE-NMGY-WVLGFWICAGCDILAFSSLLSGTLRYRHFKP 249
+++FY +N+G + + +VLV+ + N+G+ W LG A + F +G+ YR KP
Sbjct: 183 FNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVF--FFAGSNFYRLQKP 240
Query: 250 SGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAI 309
G+PL+R QVIVAS RK +++P + L+E E G+R++ HT F D+AA+
Sbjct: 241 GGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAV 300
Query: 310 MTSADITTNEDQNPNQWRLCTVTQVEEMLSL 340
T +D + W+LCTVTQVEE+ +L
Sbjct: 301 ETESD--NKGAAKSSSWKLCTVTQVEELKAL 329
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 4.9e-91, Sum P(2) = 4.9e-91
Identities = 119/330 (36%), Positives = 189/330 (57%)
Query: 12 AYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNA 71
++T ++D+ G+PA K +TGGW L+L + + L+ G+ VN+V + + ++
Sbjct: 6 SWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSS 65
Query: 72 EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131
++N + +MG+ +L L+G FL+DS+LGR+ T F +G L+ AT+ LRP
Sbjct: 66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPP 125
Query: 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191
C G+ C P + + I Y+S+YL ALG G + +++ FG+DQFD++DPKEK F
Sbjct: 126 TCHH-GEACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFF 184
Query: 192 YSYFYIALNLGCLFSETVLVYAEN-MGY-WVLGFWICAGCDILAFSSLLSGTLRYRHFKP 249
++ F+ +++G L + TVLVY ++ +G W G IC +A L GT RYR+ K
Sbjct: 185 FNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYG--ICTVSMAIAIVIFLCGTKRYRYKKS 242
Query: 250 SGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAI 309
G+P+ + QVI A+ RK +E+P + V++ E G R I HT+ F LD+AAI
Sbjct: 243 QGSPVVQIFQVIAAAFRKRKMELPQS-----IVYLYEDNPEGIR-IEHTDQFHLLDKAAI 296
Query: 310 MTSADITTNED--QNPNQWRLCTVTQVEEM 337
+ D D PN W+L +VT+VEE+
Sbjct: 297 VAEGDFEQTLDGVAIPNPWKLSSVTKVEEV 326
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 194/550 (35%), Positives = 315/550 (57%)
Query: 15 KDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEAS 74
+DGS+D +G P K +TG W+ +L N+ LA+ G+ N++ + S L ++N A+
Sbjct: 37 EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96
Query: 75 NTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC- 133
+ W G+ Y++ L+GA ++DSY GRY T +F A IG+ L+ + +L+P C
Sbjct: 97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156
Query: 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193
G LC P + + A+F+ +YL ALG G +P +++FGADQFD+ DP+E+ K SF++
Sbjct: 157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216
Query: 194 YFYIALNLGCLFSETVLVYA-ENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGN 252
+FY ++N+G S T+LV+ EN+G W LGF I ++ +S GT YR KP G+
Sbjct: 217 WFYFSINIGSFISSTLLVWVQENVG-WGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGS 275
Query: 253 PLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTS 312
P++R QV+VA+ RK+ L +P + L+E + G+R+I HT+ +KFLD+AA+++
Sbjct: 276 PITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISE 335
Query: 313 ADITTNEDQNPNQWRLCTVTQVEE---MLSLFVEQGAAMNTGVSNFQIPPA------SMT 363
+ + NP W+LCTVTQVEE ++ +F + + V QI SM
Sbjct: 336 YESKSGAFSNP--WKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMN 393
Query: 364 ----AFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIV 419
+F+I A ++D LIV + + + R P + GI + + + G+
Sbjct: 394 RIIRSFEI--PPASFGVFDTLIVLISIPIYDRF-LVPFVRRFTGIPKGLTDLQRMGIGLF 450
Query: 420 EQRRLKYASFGGEETSSL---------SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPN 470
L A+ ET L SIFWQ PQY+L+G++E F ++ ++EFF + P+
Sbjct: 451 LSV-LSIAAAAIVETVRLQLAQDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPD 509
Query: 471 GLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATV 530
++S+ AL++ +TA+G+Y+ S+IL++V T GK GWVP +LN GHLD FF+L ++
Sbjct: 510 AMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSL 569
Query: 531 TAMNLGVFVV 540
+N+ V+ +
Sbjct: 570 GLVNIPVYAL 579
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 119/325 (36%), Positives = 190/325 (58%)
Query: 20 DFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSR 79
DF G+PA + +TGGW ++L + + L G+ VN+V + + NA A+NT +
Sbjct: 17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTN 76
Query: 80 WMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKI-GQ 138
++G+ ++ L+G F++D++LGRYLT F A G+ L+ +T LRP C
Sbjct: 77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSS 136
Query: 139 LCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198
C+ S + + Y+++YL ALG G + +++ FG+DQFDE +PKE+ T F++ F+
Sbjct: 137 HCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFC 196
Query: 199 LNLGCLFSETVLVYAEN-MGY-WVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSR 256
+N+G L + TVLVY ++ +G W G+ ICA +LA S L+GT RYR K G+P+++
Sbjct: 197 INVGSLLAVTVLVYVQDDVGRKW--GYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQ 254
Query: 257 FSQVIVASLRKINLEMPTNGGGLFEVH---VREYEANGTRRILHTNDFKFLDRAAIMTS- 312
+ VIVA+ R LE+P + L++V E G +++ HT F+ LD+AAI
Sbjct: 255 VAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQE 314
Query: 313 ADITTNEDQNPNQWRLCTVTQVEEM 337
A +T+N N+W L T+T VEE+
Sbjct: 315 AGVTSNVF---NKWTLSTLTDVEEV 336
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 183/548 (33%), Positives = 303/548 (55%)
Query: 5 IEERLRHAYTKDGSLDFHGKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKS 64
I+E ++ Y +DGS+D HG P +K TG W+ + N+ LA+ G+ N++ + +
Sbjct: 18 IQEEVK-LYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTN 76
Query: 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124
L +TN A+ W G+ Y++ L+GA ++D+Y GRY T F A G++ L+ +
Sbjct: 77 ELHETNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSAS 136
Query: 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184
L+P C IG LC P + ++ + + +YL ALG G +P +++FGADQFD+ DP E
Sbjct: 137 VPGLKPAEC--IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSE 194
Query: 185 KKSKTSFYSYFYIALNLGCLFSETVLVYA-ENMGYWVLGFWICAGCDILAFSSLLSGTLR 243
+ K SF+++FY +N+G S TVLV+ EN G W LGF I LA S GT
Sbjct: 195 RVRKASFFNWFYFTINIGAFVSSTVLVWIQENYG-WELGFLIPTVFMGLATMSFFFGTPL 253
Query: 244 YRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKF 303
YR KP G+P++ QV+VA+ RK NL++P + + + ++ ++ + K
Sbjct: 254 YRFQKPRGSPITSVCQVLVAAYRKSNLKVPEDSTDEGDANTNPWKLCTVTQV---EEVKI 310
Query: 304 LDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMT 363
L R + ++ I + +V ++ +LFV+QG M + F+IPPA++
Sbjct: 311 LLRLVPIWASGI------------IFSVLH-SQIYTLFVQQGRCMKRTIGLFEIPPATLG 357
Query: 364 AFDIVSTTAFILLYDKLIVPLYLK-VAKRRPKTPSELQRVGIGLAIA--TVAMIIAGIVE 420
FD S + +YD++IVPL + + T + +G+ +++ T A I+ +
Sbjct: 358 MFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETVRL 417
Query: 421 Q--RRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIA 478
Q R L G + L+IFWQ PQY L+G + F +V ++EFF Q P+ ++SL A
Sbjct: 418 QLARDLDLVESG--DIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSA 475
Query: 479 LSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP-NLNDGHLDRFFFLSATVTAMNLGV 537
++ +T +G Y+ S+I+++V L+ GK W+P N+N+GHLD FF+L ++ ++N+ V
Sbjct: 476 WALLTTTLGNYLSSLIITLVAYLS---GKDCWIPSDNINNGHLDYFFWLLVSLGSVNIPV 532
Query: 538 FVVCARRY 545
FV + +Y
Sbjct: 533 FVFFSVKY 540
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LQL2 | PTR14_ARATH | No assigned EC number | 0.5070 | 0.9626 | 0.8811 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 562 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-54 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 4e-17 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 9e-16 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 8e-05 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 1e-04 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 0.003 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 2e-54
Identities = 103/409 (25%), Positives = 164/409 (40%), Gaps = 68/409 (16%)
Query: 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAP 165
T SII +G T G I P A +FYI +YL ALG G
Sbjct: 2 KTILLGSIIYAIGHVLLT---------LGAIPPSLSPVQVA---LFYIGLYLIALGTGGI 49
Query: 166 EPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWI 225
+P ++ FGADQFDE + F+S+FY ++N G L + + Y + + LGF +
Sbjct: 50 KPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGL 106
Query: 226 CAGCDILAFSSLLSGTLRYRHFKPSGN--PLSRFSQVIVASLRKINLEMPTNGGGLFEVH 283
A +LA L G+ RY+ P G + +I A+ + L++P + L+
Sbjct: 107 PAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWAL 166
Query: 284 VREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE------- 336
+ + + ++ +HT + A V
Sbjct: 167 EKYNKRSISQTKVHT-RVAVIFIPLPKFWAL-------------FDQQGSVWLLQAILLM 212
Query: 337 ----------------MLSLFVEQGAAMNTGV-SNFQIPPASMTAFDIVSTTAFILLYDK 379
+ +L V Q M+ + F+IPPAS +F+ ++ + + D
Sbjct: 213 LPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDF 272
Query: 380 LIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGG----EETS 435
L+ PL R + + QR G+G+ I VA +A IVE +R +YA+ G T
Sbjct: 273 LVYPLL-----RLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTV 327
Query: 436 SLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSST 484
L I W P+ + GV A EF +P+ + SL LS ++
Sbjct: 328 PLFILWSLPELFISGVGLAGAL----EFAPDALPSSMMSLWTLLSAAAA 372
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 4e-17
Identities = 81/370 (21%), Positives = 148/370 (40%), Gaps = 59/370 (15%)
Query: 85 YLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS 144
YL+ L+GA ++DS+LG++ T + S++ ++G + A+ +G +
Sbjct: 37 YLTPLIGALIADSWLGKFKTILYL---SLVYVVGHALAS------------LGAVPSLGH 81
Query: 145 PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204
P A+ + + L ALG G +P ++ FG DQF+E + + F+S+FY A+N G L
Sbjct: 82 PLHDALSLVGLALIALGTGGIKPCVSAFGGDQFEER---QLSLRFRFFSFFYFAINAGSL 138
Query: 205 FSETV-------LVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRF 257
FS + + + L F + LA G+ Y+ P GN +S+
Sbjct: 139 FSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKV 198
Query: 258 SQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITT 317
+ IV +L+K R +LD AA +
Sbjct: 199 MKCIVFALKK----------------------RFRTRSEDWPRLHWLDWAAPKYLIRMIR 236
Query: 318 NEDQNPNQWRLCTV-----TQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTA 372
+ + L ++ S + Q M+ V F I P M A + +
Sbjct: 237 STKRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLI 296
Query: 373 FILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGE 432
+ ++D ++ P K R L+++ +G+ +A +A +A +++ +
Sbjct: 297 LVPIFDYVVYPALAKCGTRFTS----LRKMAVGMLLAALAFAVAALLQNKINPTLPE--- 349
Query: 433 ETSSLSIFWQ 442
E S+ IF Q
Sbjct: 350 EPSASIIFLQ 359
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 9e-16
Identities = 85/438 (19%), Positives = 154/438 (35%), Gaps = 77/438 (17%)
Query: 71 AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRP 130
A+ FS + +YL+ ++G +L+D LG T V IG L L+ +
Sbjct: 61 THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS-------- 112
Query: 131 HGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190
S + YI + L +G G +P +++ + + ++DP +
Sbjct: 113 -------------SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDG 155
Query: 191 FYSYFYIALNLGCLFSETVLVY-AENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKP 249
++ FY+ +N+G L + + A N G+ V GF + A + L+ L RH K
Sbjct: 156 GFTLFYMGINIGSLIAPIITGLLAINYGWHV-GFGLAA---VGMIIGLVIFLLGRRHVKG 211
Query: 250 SG-----NPLSRFSQ------VIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHT 298
G NPLS ++V L + + +G ++
Sbjct: 212 IGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQN-----------TFSGVLLVISI 260
Query: 299 NDFKFLDRAAIMTSADITTNEDQNPNQWRLCTV--------TQVEEMLSLFVEQGAAM-N 349
+ A S + + + E+M S N
Sbjct: 261 L-IAIIYFAEAFRSPKVFDERRR---LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVN 316
Query: 350 TGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIA 409
+ F++PPA + + F + L L ++P TP + +GL +A
Sbjct: 317 RQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG--NKQPSTPIKF---ALGLILA 371
Query: 410 TVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIP 469
+ +I + + G + +S++W YVL E F+ + P
Sbjct: 372 GLGFLILLLA-------GIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAP 424
Query: 470 NGLKSLGIALSMSSTAIG 487
LKS +A+ + A G
Sbjct: 425 PALKSFIMAMWFLTVAAG 442
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 435 SSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMI 494
+++SI WQ PQYVL E V +EF SQ P +KS+ AL + + AIG
Sbjct: 548 NTVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIG------N 601
Query: 495 LSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRY 545
+ V+++ +N W F L +++ + + +F + A Y
Sbjct: 602 IIVLIIAEFENMAVQWAE-----------FVLFSSLMLVVMAIFSILAYTY 641
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 26/198 (13%)
Query: 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTF 108
+F G+ ++L+ + L+ + A FS + +Y++ ++G FL+D LG +
Sbjct: 23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV--- 79
Query: 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPA 168
+LG + L+ IG + S + Y+S+ + G G +
Sbjct: 80 -------MLG------ALLM------AIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120
Query: 169 LATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAG 228
++ + ++ DP+ + +S Y A N+G + + YA+ W +GF + A
Sbjct: 121 VSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176
Query: 229 CDILAFSSLLSGTLRYRH 246
I L G + H
Sbjct: 177 GMIAGLVIFLCGNRHFTH 194
|
Length = 493 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 28/185 (15%)
Query: 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHG 132
A F + +YL + +G + D G T V ++G L+ + L
Sbjct: 50 AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDL----- 104
Query: 133 CGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192
+ + A+G G + ++ ++ D + +
Sbjct: 105 ------------------IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG---F 143
Query: 193 SYFYIALNLGCLFS-ETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSG 251
+ FY+++N+G S V AEN G + +GF + A ++ + +G R
Sbjct: 144 TLFYMSINIGSFISPLLAGVIAENYG-YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP 202
Query: 252 NPLSR 256
+PLS
Sbjct: 203 DPLSG 207
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.92 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.92 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.91 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.91 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.9 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.9 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.9 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.89 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.89 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.89 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.88 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.88 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.88 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.88 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.88 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.88 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.88 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.87 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.87 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.87 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.87 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.87 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.87 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.86 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.86 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.85 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.84 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.84 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.84 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.84 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.84 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.83 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.83 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.83 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.83 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.82 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.82 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.81 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.8 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.79 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.78 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.78 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.77 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.77 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.76 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.76 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.75 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.72 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.72 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.69 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.69 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.69 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.68 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.68 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.67 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.67 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.66 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.64 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.63 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.63 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.62 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.61 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.59 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.58 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.57 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.56 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.56 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.53 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.5 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.5 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.49 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.46 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.45 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.44 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.44 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.44 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.42 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.42 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.42 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.42 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.41 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.4 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.39 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.39 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.38 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.37 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.36 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.36 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.35 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.35 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.34 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.34 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.33 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.32 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.32 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.32 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.31 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.31 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.3 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.3 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.28 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.28 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.26 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.24 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.24 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.24 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.23 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.22 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.21 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.2 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.2 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.19 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.18 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.18 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.17 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.16 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.16 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.16 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.15 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.13 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.12 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.11 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.1 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.1 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.09 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.09 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.09 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.07 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.07 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.06 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.06 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.06 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.04 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.04 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.03 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.01 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.01 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.99 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.99 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.98 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.97 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.92 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.92 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.89 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.88 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.87 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.85 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.84 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.84 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.8 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.8 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.8 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.78 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.78 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.75 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.75 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.73 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.73 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.73 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.72 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.52 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.48 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.45 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.43 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.42 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.39 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.37 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.37 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.32 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.28 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.28 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.27 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.27 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.22 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.22 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.21 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.2 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.18 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.09 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.95 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.9 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.89 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.86 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.75 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.73 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.7 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.6 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.6 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.55 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.52 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.46 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.42 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.28 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.28 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.27 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.16 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.15 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.05 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.74 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.73 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.72 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.71 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.57 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.49 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.32 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.29 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.95 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 95.37 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.15 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.98 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 93.81 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.75 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.65 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 92.71 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 92.38 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 92.04 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.75 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 91.57 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 89.53 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.56 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 87.0 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 85.4 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 84.79 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 81.79 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 81.41 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 81.1 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=386.62 Aligned_cols=523 Identities=41% Similarity=0.680 Sum_probs=449.1
Q ss_pred ccccCCCCCccc---cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 035554 18 SLDFHGKPAIKD---RTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFL 94 (562)
Q Consensus 18 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~l 94 (562)
..+.+.++..+. .++.|+....++..+.++++++|++..++..|++.++|.+...+...+..+.....+.+++++++
T Consensus 17 ~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~l 96 (571)
T KOG1237|consen 17 SVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFL 96 (571)
T ss_pred eeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444455543 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC--CCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhh
Q 035554 95 SDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC--GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATF 172 (562)
Q Consensus 95 aDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 172 (562)
+|.|+||.+++.++.++..+|.+++.+.+..|.+.|+.| ....+.|+.++..+...++.++.+.++|.|+..|+..++
T Consensus 97 aD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~f 176 (571)
T KOG1237|consen 97 ADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAF 176 (571)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhh
Confidence 999999999999999999999999999989999888776 121346888878888899999999999999999999999
Q ss_pred hhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCC
Q 035554 173 GADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGN 252 (562)
Q Consensus 173 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (562)
.+||+++.++++++.+.+.++|+|+..++|..++..+..++.+..+|.+.|.++.+++++++++++...+.++.++|.++
T Consensus 177 GadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gs 256 (571)
T KOG1237|consen 177 GADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGS 256 (571)
T ss_pred cccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCC
Confidence 99999988887777788999999999999999999999999988999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhh
Q 035554 253 PLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVT 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 332 (562)
++..+.+++..+.++++...+....... +...+.....+.++++++|++++....+. +.+....+|.+|...
T Consensus 257 p~t~i~~Vlvaa~~k~~~~~~~~~~~~~------~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~ 328 (571)
T KOG1237|consen 257 PKTRIGQVLVAAAFKRKAVVSLDPEELY------YDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVT 328 (571)
T ss_pred chhHHHHHHHHHHHHHhccCCCcchhcc------ccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCce
Confidence 9999999999999998776554432220 01111122233567788888866543221 223345667777766
Q ss_pred hhhh-----------------------hhhHHHHHhhhccCCCcc-cccCccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 035554 333 QVEE-----------------------MLSLFVEQGAAMNTGVSN-FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKV 388 (562)
Q Consensus 333 ~~~~-----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~ 388 (562)
++++ +.+.++.|+..+|++..+ +.+|++.+..+..+..++..|+.+++..|+.+|.
T Consensus 329 ~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~ 408 (571)
T KOG1237|consen 329 QVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKL 408 (571)
T ss_pred ehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhh
Confidence 6654 566778888899999876 9999999999999999999999999999999998
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhC
Q 035554 389 AKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQI 468 (562)
Q Consensus 389 ~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~ 468 (562)
.+ +++++++..++.+|+.+..+++...+..+..|.+........+.+++++|++++|+++|++|.+.+.+..|+.++++
T Consensus 409 t~-~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qa 487 (571)
T KOG1237|consen 409 TG-NPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQA 487 (571)
T ss_pred cC-CCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhC
Confidence 76 55688999999999999999999999999999998866333456799999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 469 PNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVP-PNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 469 P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~-~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
|++||+.+++++.+..++|++++..++.++...+.. ..+|++ +++|..+++.+||+++....++...+..+.++++.
T Consensus 488 P~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~ 565 (571)
T KOG1237|consen 488 PESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDY 565 (571)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeee
Confidence 999999999999999999999999999988765533 457999 99999999999999999999999999999998887
Q ss_pred cchh
Q 035554 548 ISLQ 551 (562)
Q Consensus 548 ~~~~ 551 (562)
+..+
T Consensus 566 ~~~~ 569 (571)
T KOG1237|consen 566 KDDK 569 (571)
T ss_pred cccc
Confidence 6543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=324.16 Aligned_cols=459 Identities=20% Similarity=0.279 Sum_probs=331.1
Q ss_pred CCccccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC----CChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 035554 25 PAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLR----QTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG 100 (562)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G 100 (562)
+..++..+|||.++.++..|++||++|||++..+..|++.+++ +|++++..+++.|....+..++++||+|||++|
T Consensus 11 ~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG 90 (498)
T COG3104 11 TLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG 90 (498)
T ss_pred ccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556799999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCC
Q 035554 101 RYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEE 180 (562)
Q Consensus 101 rk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 180 (562)
+||++..|.+++++|.+++.... ..+...++++..++++|.|..+|+..++++|++|++
T Consensus 91 ~~~tI~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~ 149 (498)
T COG3104 91 TRRTIVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD 149 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence 99999999999999999987751 013667999999999999999999999999999999
Q ss_pred CchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecC--CCCCchhH--
Q 035554 181 DPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFK--PSGNPLSR-- 256 (562)
Q Consensus 181 ~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-- 256 (562)
||+ |..+++++|.+.|+|+.++|.+++++.+.+||+.+|.++++.+.++++.+++.+++..... ++..+.+.
T Consensus 150 Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~ 225 (498)
T COG3104 150 DPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNF 225 (498)
T ss_pred Ccc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhh
Confidence 976 7899999999999999999999999999999999999999999999998888876665432 22222110
Q ss_pred ----HHHHHHHHHhhh--cccCCCCCCCccccchhhh--hccC--cccccc----cCchhHHHHHHhhhcccccccCCCC
Q 035554 257 ----FSQVIVASLRKI--NLEMPTNGGGLFEVHVREY--EANG--TRRILH----TNDFKFLDRAAIMTSADITTNEDQN 322 (562)
Q Consensus 257 ----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (562)
...+........ ... ............. .... .+...+ .++.+.+ .+..++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~-~~~~Lfl~~-------- 293 (498)
T COG3104 226 LLPVLGGLVVMILAALLTLLL---NQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLL-AAIPLFLFA-------- 293 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH-HHHHHHHHH--------
Confidence 001111100000 000 0000000000000 0000 000000 1111111 010000000
Q ss_pred CccceeehhhhhhhhhhHHHHHh-hhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHH
Q 035554 323 PNQWRLCTVTQVEEMLSLFVEQG-AAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQR 401 (562)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~ 401 (562)
...| ...+|..+.+..+. +..+++..++.+|+++.+++|++.++++.|+.++++.|+.++.. .++...+
T Consensus 294 ~iFW-----~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~-----~ps~~~K 363 (498)
T COG3104 294 VIFW-----ALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK-----QPSTPIK 363 (498)
T ss_pred HHHH-----HHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC-----CCCcchH
Confidence 0001 11233333333332 33445544689999999999999999999999999987776642 3688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHH
Q 035554 402 VGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSM 481 (562)
Q Consensus 402 i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~ 481 (562)
.++|+.+++.+++...+..... +++....+.+|+++.|+++++||.+.+|...+.+++.+|+++++..|++|.
T Consensus 364 FalGl~l~g~~fl~l~~~~~~~-------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wf 436 (498)
T COG3104 364 FALGLILAGLGFLILLLAGIWF-------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWF 436 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999999887763331 222446889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 482 SSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 482 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
+.+..|+.++..+.+.... +. +..+......+|+..+.+.++..+......++.++
T Consensus 437 Lt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r 492 (498)
T COG3104 437 LTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR 492 (498)
T ss_pred HHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999877662110 00 00112233457888888888877777777666443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=315.04 Aligned_cols=455 Identities=15% Similarity=0.174 Sum_probs=309.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
++|||.++.+++.+++|++++|++.++++.|+++++|++..+++++.+.+.....+..+++|+++||++||||++.++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999996699999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
++.++++++.++.+ ....++++|.++++|.|...|+..++++|++|+++++ |++
T Consensus 90 ~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~ 143 (489)
T PRK10207 90 VLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDG 143 (489)
T ss_pred HHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhc
Confidence 99999998887621 1234668899999999999999999999999887622 678
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeec--CCCCCchhHHHHHH-------
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF--KPSGNPLSRFSQVI------- 261 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------- 261 (562)
+++++|++.|+|+.++|.+++++.+..||++.|+++.+.++++++.+...+++.++. +|++++.+.....+
T Consensus 144 ~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~ 223 (489)
T PRK10207 144 AFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVV 223 (489)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998776666666665555443332 22222222111100
Q ss_pred -HHHHhhhcccCCCCCCCcc-ccchhhh---hccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhh
Q 035554 262 -VASLRKINLEMPTNGGGLF-EVHVREY---EANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE 336 (562)
Q Consensus 262 -~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 336 (562)
........... ...... ....... -.....+....++.+.+....+.... ......+.|
T Consensus 224 ~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~--------------~~f~~~~~q 287 (489)
T PRK10207 224 MIFVCAWLMHNV--EVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEA--------------VVFYILYAQ 287 (489)
T ss_pred HHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 00000000000 000000 0000000 00000000000000000000000000 000011122
Q ss_pred ---hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHH
Q 035554 337 ---MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAM 413 (562)
Q Consensus 337 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~ 413 (562)
..+.+.+ ...+....++.++++.++++|++.+++..|+.+++. +|.++ |+..+++..++.+|+++.++++
T Consensus 288 ~~~~l~l~~~--~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~----~rl~~-r~~~~~~~~k~~~G~~l~~~~~ 360 (489)
T PRK10207 288 MPTSLNFFAI--NNVHHEILGFSINPVSFQALNPFWVVVASPILAGIY----THLGS-KGKDLSMPMKFTLGMFLCSLGF 360 (489)
T ss_pred cccHHHHHHH--HhccccccceEECHHHHHhHhHHHHHHHHHHHHHHH----HHHhh-CCCCCCcHHHHHHHHHHHHHHH
Confidence 2223332 134444556788889999999999999999987544 45443 2235789999999999999887
Q ss_pred HHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 035554 414 IIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSM 493 (562)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~ 493 (562)
+.+....... ... ....+.||+++.+++.++||.+.+|+.++++.+.+|++++|.++|++++..++|+.+|..
T Consensus 361 ~~~~~~~~~~---~~~----~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~ 433 (489)
T PRK10207 361 LTAAAAGMWF---ADA----QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGY 433 (489)
T ss_pred HHHHHHHHhh---cCC----CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654332110 000 123577889999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhHhhhhcCCCCCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035554 494 ILSVVMVLTTKNGKPGWVPPNLN-DGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548 (562)
Q Consensus 494 l~~~i~~~~~~~~~~~w~~~~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 548 (562)
+...... .+. .. ++.. +..+..+|..+++++++..++++++.++.++.
T Consensus 434 l~~~~~~-~~~----~~--~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 434 VATFTAV-PDN----IT--DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHhcc-ccc----cc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764321 100 00 1111 22356788888988888888888777765544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=304.92 Aligned_cols=446 Identities=12% Similarity=0.155 Sum_probs=308.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSV--LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
.+|||.++.+++.++++++++|++.++++.|++++ +|++..+++.+.+.+.++..++++++|+++||++||||++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 45789999999999999999999999999999988 9999999999999999999999999999999955999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
.++..++.+++.++ + +.+.+++++.+.|+|.|...|+..++++|++|+++++ + |
T Consensus 86 ~~~~~~g~~~~~~~---~--------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~-~--r 139 (475)
T TIGR00924 86 GIVLMLGHFMLAMS---I--------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP-R--R 139 (475)
T ss_pred HHHHHHHHHHHHhc---c--------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc-c--c
Confidence 99999999888765 1 2556788999999999999999999999999876521 1 7
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchh----HHHHH----
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLS----RFSQV---- 260 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---- 260 (562)
+++++++|.+.|+|+++||.+++++.+..||++.|+++++..+++.+.++..++.+++.++++++.+ +....
T Consensus 140 ~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (475)
T TIGR00924 140 DGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLAL 219 (475)
T ss_pred cceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHH
Confidence 7899999999999999999999999988899999999887777666666555544432222111110 10000
Q ss_pred ---HHHHHhhhcccCCCCCCCcc-cc------chhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeeh
Q 035554 261 ---IVASLRKINLEMPTNGGGLF-EV------HVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCT 330 (562)
Q Consensus 261 ---~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 330 (562)
.....+.............. .. ......... +.....++.+.. ....+... ....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~l~~~-------------~~~~ 284 (475)
T TIGR00924 220 LAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFK-PRLDAVARNKMY-AYIVLFLE-------------AVVF 284 (475)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHhHHH-HHHHHHHH-------------HHHH
Confidence 00000000000000000000 00 000000000 000000000000 00000000 0000
Q ss_pred hhhhhhhhhH-HHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHH
Q 035554 331 VTQVEEMLSL-FVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIA 409 (562)
Q Consensus 331 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~ 409 (562)
...+.|..+. .+.+.+++|.+..++.+|++.++++|++.++++.|+++++.. +..+ |...++...++.+|+++.
T Consensus 285 ~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~----~l~~-~~~~~~~~~k~~~G~~l~ 359 (475)
T TIGR00924 285 WVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWT----RLGR-KGKDPTTPLKFTLGMLFC 359 (475)
T ss_pred HHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHH----HHHh-CCCCCCcHHHHHHHHHHH
Confidence 1112233332 222334456666678899999999999999999999886543 3322 111356777899999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Q 035554 410 TVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTY 489 (562)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~ 489 (562)
++++...++... +. +...+.++||+++++++.++||.+..|..++++.+.+|+++||+++|++.+...+|+.
T Consensus 360 ~~~~~~~~~~~~----~~----~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~ 431 (475)
T TIGR00924 360 GASFLTFAASIW----FA----DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSL 431 (475)
T ss_pred HHHHHHHHHHHh----hc----CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999988876521 11 1123578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035554 490 VCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYK 546 (562)
Q Consensus 490 lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 546 (562)
+++.+...... ..++..+|...++++++..+++++..++.+
T Consensus 432 l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 432 LGGYLATFGAV----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHhc----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887764321 112345777778888877777777776544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=290.32 Aligned_cols=443 Identities=15% Similarity=0.205 Sum_probs=295.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
+|||.++.+++.++++++++|++..+++.|+++++|+++.+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999933999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.... . ....++++..+..+|.|...|+.+++++|++|+++++ |.++
T Consensus 86 ~~lg~lll~~~~---~-------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sg 139 (493)
T PRK15462 86 MAIGHVVLGASE---I-------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGG 139 (493)
T ss_pred HHHHHHHHHHhh---c-------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccce
Confidence 999887665421 0 1233555666677888888999999999999986532 8899
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecC---CCCCchhHHHH----HH-HH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFK---PSGNPLSRFSQ----VI-VA 263 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~-~~ 263 (562)
++++|...|+|+.++|.+++++.+.+||++.|.++++.++++.+.++..+++..+.. |++.+.++... .. ..
T Consensus 140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (493)
T PRK15462 140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVL 219 (493)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHH
Confidence 999999999999999999999998899999999988877777776666554443321 11111011000 00 00
Q ss_pred -----HHhhhcccCCCCCCCccccch---hhhhc-cCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhh
Q 035554 264 -----SLRKINLEMPTNGGGLFEVHV---REYEA-NGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQV 334 (562)
Q Consensus 264 -----~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (562)
.+.......... ........ ...-. ....+....++.+......+..... ..| ..+
T Consensus 220 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~---------~Fw-----~~~ 284 (493)
T PRK15462 220 LVATPALITVLFWKEWS-VYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSM---------LFW-----AFA 284 (493)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHH---------HHH-----HHH
Confidence 000000000000 00000000 00000 0000000000001000000000000 001 111
Q ss_pred hh---hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 035554 335 EE---MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATV 411 (562)
Q Consensus 335 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~ 411 (562)
+| .++.|.. ++.|+++.++.+|+.+.+++|++.++++.|+..+++..+.+| + +.++...|..+|+++.++
T Consensus 285 ~Q~~~sl~lfa~--~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~-~~~s~~~Kfa~g~~~~g~ 357 (493)
T PRK15462 285 QQGGSSISLYID--RFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----N-RTVRIWGKFALGLGLMSA 357 (493)
T ss_pred HHhhHHHHHHHH--HhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----C-CCCCcHHHHHHHHHHHHH
Confidence 22 2333333 557777788999999999999999999999999876433221 1 146889999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHH-HHHHHH
Q 035554 412 AMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSST-AIGTYV 490 (562)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~-~lg~~l 490 (562)
+++.+.+.... ... ....+.+|++..++++++||.+.+|...+.+.+.+|++.+|+.||+|++.. .+|+.+
T Consensus 358 ~f~~l~~~~~~----~~~----~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~ 429 (493)
T PRK15462 358 GFCILTLSARW----SAM----YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYL 429 (493)
T ss_pred HHHHHHHHHhh----cCC----CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888765322 111 123788999999999999999999999999999999999999999998854 788888
Q ss_pred HHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 035554 491 CSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMN 534 (562)
Q Consensus 491 g~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~ 534 (562)
++.+.+...... .+. -....-....+..+|..++.+.++.
T Consensus 430 ~g~~~~~~~~~~-~~~---~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 430 AGVIADQTSQAS-FDA---SGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHhcccc-CCc---cccccchhhhHHHHHHHHHHHHHHH
Confidence 877766432100 000 0000001224566777777766655
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=296.19 Aligned_cols=454 Identities=14% Similarity=0.194 Sum_probs=304.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
+++|.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+........+++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999988888777777789999999944999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.++. . ..+.+++++.++++|.|...|+..+++.|++|+++++ |+++
T Consensus 98 ~~ig~~l~~~~~---~-------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~ 151 (500)
T PRK09584 98 LAIGYALVAWSG---H-------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGA 151 (500)
T ss_pred HHHHHHHHHHhc---c-------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhc
Confidence 999988877651 1 2455778899999999999999999999999865522 5578
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeec--CCCCCchhHHH------HHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF--KPSGNPLSRFS------QVIVA 263 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~ 263 (562)
++++|.+.|+|+.++|.+++++.+.+||++.|+++++..+++.+.++...+..+++ +|++++.+... .+...
T Consensus 152 ~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (500)
T PRK09584 152 FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVAL 231 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999989999999998877776665554444333222 22222222111 00000
Q ss_pred H-HhhhcccCCCCCC-Cccccchh--hhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhh
Q 035554 264 S-LRKINLEMPTNGG-GLFEVHVR--EYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLS 339 (562)
Q Consensus 264 ~-~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (562)
. ........++... ........ .............++.+.+....+.. ..+.......|...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~i~f~~~~~q~~~ 297 (500)
T PRK09584 232 IAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFILML--------------EAIIFFVLYSQMPT 297 (500)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcc
Confidence 0 0000000000000 00000000 00000000000000111100000000 00000111122233
Q ss_pred HHHHHh-hhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 035554 340 LFVEQG-AAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGI 418 (562)
Q Consensus 340 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~ 418 (562)
.+..+. ...+.+..++.+|++.++++|++.++++.|+.+++. +|.++ |+++..++.+|+++.+++++....
T Consensus 298 ~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~----~~l~~----r~~~~~~~~~G~~l~~l~f~~l~~ 369 (500)
T PRK09584 298 SLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIY----NKMGD----RLPMPHKFAIGMVLCSGAFLVLPL 369 (500)
T ss_pred HHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHH----HHhCc----CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 333332 234445567788999999999999999999998643 34433 245788999999999999988877
Q ss_pred HHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035554 419 VEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVV 498 (562)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i 498 (562)
.... .. +....+.+|+++.+++.++||++.+|...+++.+.+|+++||+++|++.+..++|+.++..+....
T Consensus 370 ~~~~----~~----~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 370 GAKF----AN----DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred HHHh----cC----CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6322 11 123467889999999999999999999999999999999999999999999999998888776532
Q ss_pred HhhhhcCCCCCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035554 499 MVLTTKNGKPGWVPPNLN-DGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548 (562)
Q Consensus 499 ~~~~~~~~~~~w~~~~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 548 (562)
.. . .-..+... ..++..+|..+++++++..+++++..++.++.
T Consensus 442 ~~-~------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 442 AV-P------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred cc-c------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 0 00001111 22367888888888877777777766665543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-24 Score=236.55 Aligned_cols=334 Identities=23% Similarity=0.388 Sum_probs=245.3
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
++|||+...+.+|+++.+|++..++..+...+.....+.++++|+++|+++||+|++.++.+++.+|.+++++.+. |..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999988887532 210
Q ss_pred CCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 129 RPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
.........+++..+.++|.|+..|+..++.+|+++++++ +.|.++++++|+++|+|+.+++.
T Consensus 80 --------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~ 142 (654)
T TIGR00926 80 --------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTI 142 (654)
T ss_pred --------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012345577889999999999999999999999986442 22789999999999999999999
Q ss_pred hhhhcccc-------cchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccc
Q 035554 209 VLVYAENM-------GYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFE 281 (562)
Q Consensus 209 ~~~~l~~~-------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (562)
+.+++.+. .+|+.+|.+++++++++++++....+++++++|.+++..+..++...+.+++....... ....+
T Consensus 143 i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-~~~~~ 221 (654)
T TIGR00926 143 ITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-WPLHW 221 (654)
T ss_pred HHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-cchhH
Confidence 99998743 36999999999999999998888777777666766666666666666665532211110 00111
Q ss_pred cchhhhhccCcccccccCch-hHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCcc
Q 035554 282 VHVREYEANGTRRILHTNDF-KFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPA 360 (562)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (562)
.+.. .........+.. +.+....+.. ++ .....+..|..+.+..|...++.++.++.+|+.
T Consensus 222 ld~a----~~~~~~~~V~evkrll~il~l~i-------------~~-~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~ 283 (654)
T TIGR00926 222 LDYA----KDKHDIRMIRSTKRLLRVLVLFI-------------PL-PMFWALFDQQGSRWTLQATRMDGDVGGFEIQPD 283 (654)
T ss_pred HHHh----ccccccchHHHHHHHHHHHHHHH-------------HH-HHHHHHHhcchhHHHHHHHHhcCccCCEecCHH
Confidence 1100 000000000000 1111110000 00 111123345666677777777777767888999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 361 SMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRR 423 (562)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~ 423 (562)
.++.+|++.++++.|+.+..+.|..+|++. ++++..++++|+++.+++++.....+..+
T Consensus 284 ~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~----~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 284 QMQVVNPLLILIFVPIFDYIVYPAIAKCGT----RFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999878887766533 46789999999999999998887776655
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-23 Score=216.54 Aligned_cols=375 Identities=10% Similarity=0.029 Sum_probs=241.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.+.++.+.+..++...+.....+.+|.|+.+++|+|..+.|++.+.+.++..+++++.|+++|| +||||++..+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHH
Confidence 3677777778888888888888999999999999999999999999999999999999999999 799999999988776
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+........+. ....+.+.++++|+++|++.+...+...+++.|.+|+++ |+++++
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~ 151 (392)
T PRK12382 93 LAGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMS 151 (392)
T ss_pred HHHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhh
Confidence 66544332211111 001247788999999999999988888899999999888 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
+++.+.++|..++|.+++++.+..||+..+.+..+..++.... .. +.++.+++++...+..+.. +
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~----~------- 216 (392)
T PRK12382 152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF---NG-TVRKVPAHAGERPSLWSVV----G------- 216 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH---HH-hccCCCCCcccCchHHHHH----H-------
Confidence 9999999999999999999988889998777655433322221 11 1111111100000000000 0
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
..+......... ......+..+.+.|..+. +.+
T Consensus 217 ---------------------------~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~~~~-~~~---- 249 (392)
T PRK12382 217 ---------------------------LIWKPGLGLALQ---------------GVGFAVIGTFVSLYFASK-GWA---- 249 (392)
T ss_pred ---------------------------HHHHhHHHHHHH---------------HHHHhHHHHHHHHHHHhc-CCc----
Confidence 000000000000 000000111233333321 100
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
+.+.......+..++..++.+ .+.+|+++ .+.+..+..+.+++.......
T Consensus 250 ----~~~~~~~~~~~~~~~~~~~~g----~l~~r~g~--------~~~~~~~~~~~~~~~~~~~~~-------------- 299 (392)
T PRK12382 250 ----MAGFTLTAFGGAFVLMRVLFG----WMPDRFGG--------VKVAIVSLLVETVGLLLLWLA-------------- 299 (392)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHH----HHHHhcCC--------CeehHHHHHHHHHHHHHHHHc--------------
Confidence 111111111222222223333 23334433 123455566666665544332
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+...+..++.+++.+...|.......+..|+++||+++|++++...+|..+++.+.+.+.+..
T Consensus 300 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~----------- 365 (392)
T PRK12382 300 ---PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF----------- 365 (392)
T ss_pred ---ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 234455667788899999888888888999999999999999999999999999999998776522
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
+++..|.+.+++.+++.+..+..
T Consensus 366 -----g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 366 -----GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred -----CchHHHHHHHHHHHHHHHHHHhh
Confidence 23567777777777766665544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-23 Score=214.68 Aligned_cols=377 Identities=12% Similarity=0.019 Sum_probs=247.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
+|.+..+.+..+...++.....+.++.|+++++|.|..+.|++.+.+.++..+++++.|+++|| +||||++..+.++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence 3788888999999999999999999999999999999999999999999999999999999999 799999999998888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+.++....+ ....+...+++.|+++|++.+...+...++..|++|+++ |+++.+
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~ 151 (399)
T PRK05122 93 LSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVIS 151 (399)
T ss_pred HHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchh
Confidence 77666554411010 001236678999999999999999999999999998888 899999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
++....++|..+++.+++++.+..||+..+++..+..++..+.. .+ .+..++++++.....+.. +
T Consensus 152 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~----~------- 216 (399)
T PRK05122 152 WNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGERLPFRRVL----G------- 216 (399)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccchhHHHHH----H-------
Confidence 99999999999999999999888899998887665544332222 11 111111110000000000 0
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
+ .+........ . .........+.+.|..+ .+.+
T Consensus 217 -------------------------~--~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~-~~~~---- 249 (399)
T PRK05122 217 -------------------------R--VWPYGMGLAL-A--------------SIGFGTIATFITLYYAA-RGWD---- 249 (399)
T ss_pred -------------------------H--HHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHH-cccc----
Confidence 0 0000000000 0 00000011123333322 1111
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
..+.......+..++..++.+ .+.+|.+ +.+.+..+.++.+++.......
T Consensus 250 ----~~~~~~~~~~~~~~~~~~~~g----~l~~r~~--------~~~~~~~~~~~~~~~~~~~~~~-------------- 299 (399)
T PRK05122 250 ----GAALALTLFGVAFVGARLLFG----NLINRLG--------GLRVAIVSLLVEILGLLLLWLA-------------- 299 (399)
T ss_pred ----cchHHHHHHHHHHHHHHHHHH----HHHHHhc--------cHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 011111112222222222222 2333432 2234555666666665554432
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+..++..++.|++.+...|.......+..|++.||+++|+++....+|..+++.+.+.+.+.
T Consensus 300 ---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------------ 364 (399)
T PRK05122 300 ---PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW------------ 364 (399)
T ss_pred ---ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 24445566788999999988888888888999999999999999999999999998888866542
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVCAR 543 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 543 (562)
.+++..|.+.+++++++.+..++..+
T Consensus 365 ----~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 365 ----FGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 13466777777777776666555443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-23 Score=214.26 Aligned_cols=348 Identities=17% Similarity=0.121 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+.++...++.+.+++.+.+.++.|+++++|+|..+.|.+.+.+.+...+..+++|+++|| +|||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999999999999999999999999999999999999 7999999999999999888
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
++.+. + +.+.+++.+++.|++.+...|+..+++.|.+|+++ |+++.++++.
T Consensus 92 ~~~~~---~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~ 142 (400)
T PRK11646 92 TMAIA---H--------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMM 142 (400)
T ss_pred HHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHH
Confidence 87765 2 37778899999999999889999999999998877 9999999999
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCC
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGG 277 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (562)
..++|..++|.+++++. ..+|++.|++.++..++..++.....++.+. ++..++.+ +.....+++
T Consensus 143 ~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~---------- 207 (400)
T PRK11646 143 QDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR---EGMTRVLRD---------- 207 (400)
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH---HHHHHHHcC----------
Confidence 99999999999999998 6799999998777655544433322221100 00000000 000000000
Q ss_pred CccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCccccc
Q 035554 278 GLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQI 357 (562)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (562)
.. ++......... ...........+.|..+..+ + ..
T Consensus 208 ---------------------~~--~~~~~~~~~~~--------------~~~~~~~~~~~p~~~~~~~~-~------~~ 243 (400)
T PRK11646 208 ---------------------KR--FVTYVLTLTGY--------------YMLAVQVMLMLPIMVNDIAG-S------PS 243 (400)
T ss_pred ---------------------ch--HHHHHHHHHHH--------------HHHHHHHHHhhhhhHHhhcC-C------ch
Confidence 00 00000000000 00000011123444332211 1 00
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q 035554 358 PPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSL 437 (562)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (562)
..+.+.....+....... +.. ++..|| ....+.+..+.++.+++....+.. .
T Consensus 244 ~~g~l~~~~~~~~~~~~~-------~~~-~~~~~r---~~~~~~~~~~~~~~~~~~~~l~~~-----------------~ 295 (400)
T PRK11646 244 AVKWMYAIEACLSLTLLY-------PIA-RWSEKR---FRLEHRLMAGLLIMSLSMFPIGMV-----------------S 295 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHH-HHHHHh---cchhHHHHHHHHHHHHHHHHHHHh-----------------h
Confidence 011111111111111111 111 221111 123334566666666666555443 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLT 502 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~ 502 (562)
+.+++....++++++++...|...+++.+.+|++.||+++|++++..++|..+|+.+.|.+.+.+
T Consensus 296 ~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 296 NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 33444556678889999999999999999999999999999999999999999999999887643
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=217.98 Aligned_cols=398 Identities=11% Similarity=0.042 Sum_probs=250.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+..++...++..++.......+|.+.+ +++.+..+.|++.+.+.++..++.++.|+++|| +|||+++..+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~ 94 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGL 94 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHH
Confidence 34555666677777777667777777765 577799999999999999999999999999999 7999999988887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++......+ ..+.+.+++.+++.|++.+...++..+++.|.+|+++ |+++.++
T Consensus 95 ~~~~~~~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 95 GFIGLALNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 666554321001 1136778889999999988888888999999998777 8899999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.+...++|..+||.+++.+.+..+|++.|++.++..+++.+..+..++..+.+++++++.++..+......++
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 223 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLAS------- 223 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcC-------
Confidence 9999999999999999999887899999988777666555444333211110000011111000000000000
Q ss_pred CCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcc
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSN 354 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (562)
......-..... ......+..+.+.|..+..+.+..
T Consensus 224 ------------------------~~~~~~~~~~~~-----------------~~~~~~~~~~~p~~~~~~~g~~~~--- 259 (417)
T PRK10489 224 ------------------------PVVGGIALLGGL-----------------LTMASAVRVLYPALADEVWQMGAA--- 259 (417)
T ss_pred ------------------------hHHHHHHHHHHH-----------------HHHHHhHHHhhHHHHHhccCCChh---
Confidence 000000000000 000001111334444432222211
Q ss_pred cccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 035554 355 FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEET 434 (562)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (562)
..+.+.....+..++...+.+ +..+|+ .+.+.+..+.++.++++......
T Consensus 260 ---~~g~~~~~~~~g~~ig~~~~~--------~l~~~~----~~~~~l~~~~~~~~~~~~~~~~~--------------- 309 (417)
T PRK10489 260 ---QIGLLYAAVPLGAALGALTSG--------WLAHSA----RPGLLMLLSTLGSFLAVGLFGLM--------------- 309 (417)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHH--------Hhhhcc----CcchHHHHHHHHHHHHHHHHHcc---------------
Confidence 112222222222323322222 222211 12224455556665665544332
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCC
Q 035554 435 SSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPN 514 (562)
Q Consensus 435 ~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~ 514 (562)
.+.+......++.|++.+...+..+++..+..|++.||+++|+++....+|..+|+.+.|.+.+..
T Consensus 310 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~------------ 375 (417)
T PRK10489 310 --PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM------------ 375 (417)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh------------
Confidence 344455667788888888888888899999999999999999999999999999999999776532
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcc
Q 035554 515 LNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQEGES 557 (562)
Q Consensus 515 l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (562)
+....+...+++.++..++.....++++++++|+.++|.
T Consensus 376 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 376 ----TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred ----chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 123456666666666666666667888888887776554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-22 Score=211.75 Aligned_cols=374 Identities=13% Similarity=0.052 Sum_probs=237.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|...+.+.+..++.....+...+.+| .+.+++|.|..+.|++.+.+.++..++.++.|+++|| +||||++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHH
Confidence 44556656655555444444434344 5677899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+.++ + +.+.++++|+++|++.+...|...+++.|++|+++ |+++++
T Consensus 86 ~~~~~~~~~---~--------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g 136 (390)
T PRK03545 86 ASHVLSALA---W--------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALS 136 (390)
T ss_pred HHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHH
Confidence 998888776 2 37889999999999999888999999999999888 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
++..+.++|..++|.+++.+.+..||++.|++.+++.++..+..+...|+.+++ ++++.++ ....+++
T Consensus 137 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~------ 204 (390)
T PRK03545 137 LLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS----LPLLFRR------ 204 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH----HHHHHhC------
Confidence 999999999999999999998888999999998876665544433322221110 0011000 0000010
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
......-...... .........+.+.+..+..+.+..
T Consensus 205 -------------------------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~g~s~~-- 241 (390)
T PRK03545 205 -------------------------PALVSLYLLTVVV----------------VTAHFTAYSYIEPFVQQVAGLSEN-- 241 (390)
T ss_pred -------------------------cHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhcCCCcc--
Confidence 0000000000000 000000011222233322122111
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
..+.......+..++...+. .+..+|. ..+.+..+..+..++.......
T Consensus 242 ----~~~~~~~~~~~~~~~g~~~~--------g~l~dr~-----~~~~~~~~~~~~~~~~~~l~~~-------------- 290 (390)
T PRK03545 242 ----FATLLLLLFGGAGIIGSVLF--------SRLGNRH-----PSGFLLIAIALLLVCLLLLLPA-------------- 290 (390)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH--------HHHhhcc-----chhHHHHHHHHHHHHHHHHHHH--------------
Confidence 11111111122222222222 2332211 1123444544444444333221
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
..+.+.++...++.|++.+...+.....+.+..| +.+++++|+++....+|..+|+.+.|.+.+.
T Consensus 291 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~------------ 355 (390)
T PRK03545 291 --ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH------------ 355 (390)
T ss_pred --hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 1344556667888899988888888888888887 5789999999999999999999998876652
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVCAR 543 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 543 (562)
.++...|...+++.+++++.++...+
T Consensus 356 ----~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 356 ----LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ----cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 23356777777777777777766553
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=215.82 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=152.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
.+|+.+.+++..++...+++...++++.|+++++|++..+.|++.+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~ 83 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF 83 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999 79999999999888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.+++.+.. +.+.+++++.+.+.+.+...+...+...|.+|+++ |++++
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 134 (395)
T PRK10054 84 ASGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIF 134 (395)
T ss_pred HHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHH
Confidence 88887777652 35667777888887777778888999999998777 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
++.+...++|.+++|.+++++.+ .+|+..|++.+++.++..++.
T Consensus 135 g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 135 SLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 689999998887766665443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=214.42 Aligned_cols=178 Identities=12% Similarity=0.033 Sum_probs=154.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|.++.+.+..++..+..+.+.+.+|.|.+ ++|.+..+.+++.+.+.++..++.++.|+++|| +||||++..+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHH
Confidence 457788888889999999999998888876 599999999999999999999999999999999 799999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.++ + +.+.++++|+++|++.+...|...+++.|.+|+++ |+++++
T Consensus 87 ~~~~~~~~~---~--------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 137 (471)
T PRK10504 87 LGSLFCALS---G--------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMT 137 (471)
T ss_pred HHHHHHHHh---C--------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 888776654 2 36778899999999999999999999999998777 889999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.+...++|..++|.+++++.+..+|++.|++..+...++.++.....+
T Consensus 138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998899999999988766655555444333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-21 Score=206.25 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=147.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.+|.......+..+++.+..+......| .+.+++|+++.+.+++.+.+.++..++.++.|+++|| +||||++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence 34555666666777777776666665555 4566799999999999999999999999999999999 799999999998
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+++.++ + +.+.+++.|++.|++.+...+...+++.|.+|+++ |++
T Consensus 89 ~~~~~~~~~~~~---~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 139 (406)
T PRK11551 89 LFGLFSLATAQA---W--------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT 139 (406)
T ss_pred HHHHHHHHHHHh---c--------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence 888887776665 2 37778899999999999999999999999999888 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+.++++...++|+.+++.+++.+.+..+|+..|++.+++.++..++.
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888899999998776555444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=204.87 Aligned_cols=409 Identities=14% Similarity=0.087 Sum_probs=258.6
Q ss_pred CCccccCCCchHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 035554 25 PAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMV---LFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGR 101 (562)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr 101 (562)
|..+..+.+.|-.+.+++..++.+.++|.+.-++. +++.++.++|..|.|.+.+++.+.+.++..+.|.++|| .+.
T Consensus 15 p~~~~~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~np 93 (448)
T COG2271 15 PASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNP 93 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCC
Confidence 44444455556778888888899999998876654 68888999999999999999999999999999999999 799
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC
Q 035554 102 YLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED 181 (562)
Q Consensus 102 k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 181 (562)
|+.+.+++++.++..+++.+.. +...+.+...+.|..+|.-.|++...++.+++.++
T Consensus 94 r~fm~~gLilsai~nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e 150 (448)
T COG2271 94 RYFMAFGLILSAIVNILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE 150 (448)
T ss_pred ceeehHHHHHHHHHHHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc
Confidence 9999999999999999998872 37788899999999999999999999999999999
Q ss_pred chhhhhhhhhHHHHHHHHhHHHHHHhhhh--hhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHH
Q 035554 182 PKEKKSKTSFYSYFYIALNLGCLFSETVL--VYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQ 259 (562)
Q Consensus 182 ~~~~~~r~~~~~~~~~~~~lg~~~~~~~~--~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (562)
||+..++.+.+.|+|+++.|.+. +++..+++|+.+|++++++.++..+..+...++ +|+...+..+.+
T Consensus 151 ------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd----~Pqs~GLP~ie~ 220 (448)
T COG2271 151 ------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD----RPQSEGLPPIEE 220 (448)
T ss_pred ------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC----CccccCCCCHHH
Confidence 99999999999999999999999 898888899999999998776555554443332 222111111000
Q ss_pred HHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehh--------
Q 035554 260 VIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTV-------- 331 (562)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 331 (562)
. + ++ +.+.+ + + ..+++ ..+.++.+ .... . ..+..|.++..
T Consensus 221 ~-----~--~d-----~~e~~--~-~-~~~~~--~ls~~~i~--~~YV-----L-------~Nk~iW~la~a~vfvYivR 268 (448)
T COG2271 221 Y-----R--GD-----PLEIY--E-E-EKENE--GLTAWQIF--VKYV-----L-------KNKLIWLLALANVFVYVVR 268 (448)
T ss_pred h-----h--cC-----chhhh--h-h-hccCC--CccHHHHH--HHHH-----H-------cChHHHHHHHHHHHHHHHH
Confidence 0 0 00 00000 0 0 00000 01111100 0000 0 00011111110
Q ss_pred hhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 035554 332 TQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATV 411 (562)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~ 411 (562)
..+.++.|.|+.|..+.+.. .....-...-...+....+.+++.+.+.+. + | .+... +-+++..+
T Consensus 269 ~gi~dW~p~YL~e~k~~s~~------~a~~a~~lfE~agl~G~Ll~GwlSDklfkg--r-R----~p~~~--i~~~~i~~ 333 (448)
T COG2271 269 YGINDWGPLYLSEVKGFSLV------KANWAISLFEVAGLPGTLLAGWLSDKLFKG--R-R----GPMAL--IFMLLITA 333 (448)
T ss_pred HHHhhhHHHHHHHhcCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHhccc--c-c----chHHH--HHHHHHHH
Confidence 12344888999886554432 111112222334444444555554433322 1 1 12211 22222333
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhH--HHHHHhhCCchhHHHHHHHHHHHHHH-HH
Q 035554 412 AMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQ--MEFFASQIPNGLKSLGIALSMSSTAI-GT 488 (562)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~--~~~~~~~~P~~~rg~~~gl~~~~~~l-g~ 488 (562)
++..+... .+.+.+.. ..+++.+|.-...|.. -..+.|.+|++-.|+++|+..++..+ |.
T Consensus 334 ~~~~~w~~---------------~~~~~~l~--~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga 396 (448)
T COG2271 334 SLVLYWLA---------------PNGSYLLD--AILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA 396 (448)
T ss_pred HHHHHHcC---------------CCccHHHH--HHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH
Confidence 33333221 12233333 3344444444444432 23456999999999999999999999 88
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 489 YVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 489 ~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
.++....+.+.+. .+| ...|.++.+.++++.+.++.+.+..++
T Consensus 397 ~~a~~~~g~i~d~------~gW----------~g~Fi~~~~~a~l~~lll~~~~~~~~~ 439 (448)
T COG2271 397 ALAGLPLGYIADT------WGW----------DGGFIVLSIAALLAILLLLPVWNAEER 439 (448)
T ss_pred HhcCCcceeeEec------CCC----------cchHHHHHHHHHHHHHHHHHHHhhcch
Confidence 8887776654331 245 557777777777777777766654333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=210.06 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..+..++..++..+..+.+...+|.+. +++|+|..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHH
Confidence 3444455555566665566666666655 4699999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.++ + +++.+++.|++.|++.|...+...+++.|++|+++ |+++.++
T Consensus 101 ~~~~~~~~---~--------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~ 151 (434)
T PRK11663 101 INILFGFS---S--------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAI 151 (434)
T ss_pred HHHHHHHH---h--------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHH
Confidence 88887776 2 36778888999999999888999999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~ 233 (562)
++.+.++|..++|.+++++.+.++|++.|++.++..++.
T Consensus 152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 999999999999999999988899999999877654433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-22 Score=206.81 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=135.1
Q ss_pred HHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCC
Q 035554 57 NMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKI 136 (562)
Q Consensus 57 ~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (562)
....++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.++ +
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~---~---------- 80 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFA---G---------- 80 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHH---c----------
Confidence 34455788999999999999999999999999999999999 799999999999998888888776 2
Q ss_pred CCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc
Q 035554 137 GQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM 216 (562)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~ 216 (562)
+.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+.
T Consensus 81 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 144 (399)
T TIGR00893 81 ----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIH 144 (399)
T ss_pred ----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 37789999999999999999999999999999877 99999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh
Q 035554 217 GYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 217 ~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.+|++.|++.++..++..+..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 145 FSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred CCchHHHHHHHHHHHHHHHHhhh
Confidence 89999999887766655554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-21 Score=192.29 Aligned_cols=379 Identities=14% Similarity=0.067 Sum_probs=254.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+..|..++.+.++.|+....=+.....+|. +.+++|.|..++|++++.|..+..++.|+...+.|| +.||++++....
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence 445678888899999998888888887776 677899999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+++++.++++++ |+ ++.++++|++.|+..|.+++...++..++.|+++ |++
T Consensus 87 lFi~~n~l~alA---p~--------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~ 137 (394)
T COG2814 87 LFIVSNLLSALA---PS--------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGR 137 (394)
T ss_pred HHHHHHHHHHHh---cc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhh
Confidence 999999999998 54 9999999999999999999999999999999999 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCC-CCCchhHHHHHHHHHHhhhc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKP-SGNPLSRFSQVIVASLRKIN 269 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 269 (562)
+.++...+..++..+|..++.++.+.+|||..|++..++.+++.+..+...| .++.++ .+.+.++..+.+ |++
T Consensus 138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~~~~~~~~l----~~p- 211 (394)
T COG2814 138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSLPGPLRTLLRLL----RRP- 211 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCCcchhHHHHHh----cCc-
Confidence 9999999999999999999999999999999999988888777777666555 111111 111111111111 110
Q ss_pred ccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhcc
Q 035554 270 LEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMN 349 (562)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 349 (562)
+. +......... ....+....++..++++..+.+
T Consensus 212 -----------------------------~v--~~~l~~t~l~---------------~~g~F~~ftYi~P~L~~v~g~s 245 (394)
T COG2814 212 -----------------------------GV--LLGLLATFLF---------------MTGHFALYTYIRPFLESVAGFS 245 (394)
T ss_pred -----------------------------hH--HHHHHHHHHH---------------HcchhhhHHhHHHHHHHccCCC
Confidence 00 0000000000 0000000112222333322222
Q ss_pred CCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035554 350 TGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASF 429 (562)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~ 429 (562)
.. ..+..-..+.+..++... +..|..+| ++.+.+....+++++.++...+.
T Consensus 246 ~~------~vs~~Ll~~Gv~~~~Gn~--------~gGrl~dr-----~~~~~l~~~~~l~a~~~l~l~~~---------- 296 (394)
T COG2814 246 VS------AVSLVLLAFGIAGFIGNL--------LGGRLADR-----GPRRALIAALLLLALALLALTFT---------- 296 (394)
T ss_pred Hh------HHHHHHHHHHHHHHHHHH--------HHhhhccc-----cchhHHHHHHHHHHHHHHHHHHh----------
Confidence 11 111111222222222222 22344441 24445566667777776665554
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCC
Q 035554 430 GGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPG 509 (562)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~ 509 (562)
..+.+..+...++.+++........+....+.. ++.++.+++++....++|..+|..+.|.+.+.
T Consensus 297 ------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-------- 361 (394)
T COG2814 297 ------GASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA-------- 361 (394)
T ss_pred ------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 233344445555555554444444444444433 47799999999999999999999999987762
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 510 WVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 510 w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.++....+.-+++.+++.++.+...++
T Consensus 362 --------~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 362 --------LGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred --------hchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234556667677777776666655544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-22 Score=202.66 Aligned_cols=358 Identities=13% Similarity=0.033 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 035554 39 LLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLG 118 (562)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~ 118 (562)
.++...++..++.......+|.|..+ ++.+..+.+++.+.+.++..++.++.|+++|| +||||++..+.++..++.++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHH
Confidence 45667777777777777888887764 78999999999999999999999999999999 79999999999888888777
Q ss_pred HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
+.+....+ ..+.+.++++|++.|++.+...|...+++.|++|+++ |++..++.+..
T Consensus 81 ~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 136 (365)
T TIGR00900 81 LPFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAV 136 (365)
T ss_pred HHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHH
Confidence 76652111 1247889999999999999999999999999999877 99999999999
Q ss_pred HhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchh-HHHHHHHHHHhhhcccCCCCCC
Q 035554 199 LNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLS-RFSQVIVASLRKINLEMPTNGG 277 (562)
Q Consensus 199 ~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 277 (562)
.++|..++|.+++++.+..+|++.|++.++..+++.+..+..+.+.+.+ +++++.+ +..+......+
T Consensus 137 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------- 204 (365)
T TIGR00900 137 RSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSNAVLRDTREGIK----------- 204 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccchhHHHHHHhHHH-----------
Confidence 9999999999999998888999999987776665554443332211111 0111100 00000000000
Q ss_pred CccccchhhhhccCcccccccCc-hhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccc
Q 035554 278 GLFEVHVREYEANGTRRILHTND-FKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQ 356 (562)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (562)
...+++ ....-....... ...........+.+..+..+.+..
T Consensus 205 -----------------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~----- 247 (365)
T TIGR00900 205 -----------------FVLKNPLLRTLLLLALLFN---------------LVFAPAIVALFPYVQSKYLGRGST----- 247 (365)
T ss_pred -----------------HHHcCcHHHHHHHHHHHHH---------------HHHHHHHHHHhHHHHHHHhCCchH-----
Confidence 000000 000000000000 000000001334444432222111
Q ss_pred cCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcc
Q 035554 357 IPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSS 436 (562)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (562)
..+.......+..++...+.. .+.+|.+ +.+.+..+.++.++++....+. .+
T Consensus 248 -~~~~~~~~~~~~~~~~~~~~~----~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------------~~ 299 (365)
T TIGR00900 248 -HYGWVLAAFGLGALLGALLLG----LLGRYFK--------RMALMTGAIFVIGLAILVVGLT---------------PP 299 (365)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH----HHHHHhc--------hhHHHHHHHHHHHHHHHHHHhh---------------ch
Confidence 112222222222233333322 2222322 2223444555555555554443 01
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~ 500 (562)
+.+...+..++.+++.+...+...++..+.+|++.||+++|++++...++..+++.+.+.+.+
T Consensus 300 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 300 -NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788999999999999999999999999999999999999999999999999886654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=209.96 Aligned_cols=380 Identities=13% Similarity=0.040 Sum_probs=235.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|..+..+.+..++..+-...+..-+|. +.+++|.+..+.+|+.+.|.++...+.++.|+++|| +|||+++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 345556666666666666666665555 466899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccC-CCCCchhhhhhhhhH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQF-DEEDPKEKKSKTSFY 192 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~ 192 (562)
++.++++++ + +.+.++++|+++|+|.+...|.....+.+.+ |+++ |++++
T Consensus 83 ~~~~~~~~a---~--------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~ 133 (495)
T PRK14995 83 LASLAAAFS---P--------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMAL 133 (495)
T ss_pred HHHHHHHHc---C--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHH
Confidence 999998876 2 3788999999999999998888888887776 4445 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHH--------HHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVI--------VAS 264 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 264 (562)
+++....++|..++|.+++++.+..+||+.|++...+.++..++.....|+.+.++ .++.+.....+ ...
T Consensus 134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~ 211 (495)
T PRK14995 134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYS 211 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766665555444333322111 11111111110 011
Q ss_pred HhhhcccCCCCCCCccccchhhhhccCcccccccCchhHH-HHHH-hhhcccccccCCCC--------Cccceeehhh--
Q 035554 265 LRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFL-DRAA-IMTSADITTNEDQN--------PNQWRLCTVT-- 332 (562)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~--------~~~~~l~~~~-- 332 (562)
++.. . ......+ .-..... .... ..+.... ...... .+.+......
T Consensus 212 ~~~~--~---~~~~~~~----------------~~~~~~~~~~~~l~~f~~~e-~~~~~p~~~~~lf~~~~~~~~~~~~~ 269 (495)
T PRK14995 212 AKTA--L---KGFLSLW----------------VTSLTLLTGALLLGLFIRTQ-LAASRPMIDMRLFTHRIILSGVVMAM 269 (495)
T ss_pred HHhc--c---ccCCchH----------------HHHHHHHHHHHHHHHHHHHH-hcCCCCCcCHHHhCCcccHHHHHHHH
Confidence 1110 0 0000000 0000000 0000 0000000 000000 0000000000
Q ss_pred -------hhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHH
Q 035554 333 -------QVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIG 405 (562)
Q Consensus 333 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g 405 (562)
......+.|+++..+.+ ....+.......+...+..++.+ .+.+|.++ .+.+..|
T Consensus 270 ~~~~~~~~~~~~~~~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g----~l~~r~g~--------~~~~~~g 331 (495)
T PRK14995 270 TAMITLVGFELLMAQELQFVHGLS------PLEAGMFMLPVMVASGFSGPIAG----ILVSRLGL--------RLVATGG 331 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCc--------hHHHHHH
Confidence 00012233333322222 11122222222333333334443 33345432 2245567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHH
Q 035554 406 LAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTA 485 (562)
Q Consensus 406 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~ 485 (562)
.++.+++........ ...+.+......++.|+|.++..++....+.+.+|++.+|.+++++++..+
T Consensus 332 ~~~~~~~~~~l~~~~--------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (495)
T PRK14995 332 MALSALSFYGLAMTD--------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE 397 (495)
T ss_pred HHHHHHHHHHHHHhc--------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence 776666665543331 123444556678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHh
Q 035554 486 IGTYVCSMILSVVMV 500 (562)
Q Consensus 486 lg~~lg~~l~~~i~~ 500 (562)
+|+.+|+.+.+.+..
T Consensus 398 lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 398 LGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997754
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=198.59 Aligned_cols=382 Identities=15% Similarity=0.056 Sum_probs=239.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhh-----hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE-----ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQ 109 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~ 109 (562)
|....+.+..++...++....+.+|.|.++ +|.+..+ .|++.+++.++..++.++.|+++|| +|||+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHH
Confidence 566777788888889988899999998864 8888654 4888899999999999999999999 79999999998
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhh
Q 035554 110 AFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189 (562)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 189 (562)
++..++.+++... + +.+.+++.|++.|++.+ ..+...+++.|.+|+++ |+
T Consensus 92 ~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~ 141 (408)
T PRK09874 92 LGMGIVMVLMGLA---Q--------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SG 141 (408)
T ss_pred HHHHHHHHHHHHH---h--------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hh
Confidence 8888888776654 1 37778899999998865 45777888899998777 89
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhc
Q 035554 190 SFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKIN 269 (562)
Q Consensus 190 ~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (562)
++.++++...++|..++|.+++.+.+..+|+..|++..++.++..+..+...++.. ++.+++.+...+.. .+
T Consensus 142 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~--- 213 (408)
T PRK09874 142 WALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF--QPVSKKEMLHMREV---VT--- 213 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccchhhhHHHHH---HH---
Confidence 99999999999999999999999988889999999888766655544333222211 11110000000000 00
Q ss_pred ccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhcc
Q 035554 270 LEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMN 349 (562)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 349 (562)
..........+-...... ......+....+.|..+.....
T Consensus 214 ------------------------~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 253 (408)
T PRK09874 214 ------------------------SLKNPKLVLSLFVTTLII----------------QVATGSIAPILTLYVRELAGNV 253 (408)
T ss_pred ------------------------hCcCCchHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhccc
Confidence 000000000000000000 0000001112233333211100
Q ss_pred CCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035554 350 TGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASF 429 (562)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~ 429 (562)
.. .....+.+.....+..++..+..+ .+.+|.++ .+.+..+.++.++++......
T Consensus 254 ~~---~~~~~g~~~~~~~l~~~~~~~~~g----~l~dr~g~--------~~~~~~~~~~~~~~~~~~~~~---------- 308 (408)
T PRK09874 254 SN---IAFISGMIASVPGVAALLSAPRLG----KLGDRIGP--------EKILITALIFSVLLLIPMSFV---------- 308 (408)
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccc--------chhHHHHHHHHHHHHHHHHHh----------
Confidence 00 000001111111122222222222 22334332 223444555444444433332
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCC
Q 035554 430 GGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPG 509 (562)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~ 509 (562)
.+.+...+..++.|++.+...|...+...+..|++.+|+.+++++....+|..+|+.+.+.+.+.
T Consensus 309 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-------- 373 (408)
T PRK09874 309 -------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-------- 373 (408)
T ss_pred -------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh--------
Confidence 23445566778889999999999999999999999999999999999999999999998876541
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 510 WVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 510 w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.++...|.+.+++.+++.+..+...++
T Consensus 374 --------~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 374 --------YGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred --------cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134567888888887777666554433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-21 Score=203.61 Aligned_cols=172 Identities=12% Similarity=0.054 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGV---EVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~---~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...++....+|.. ......|+.++ |++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHH
Confidence 34444444444544443 22344577777 9999999999999999999999999999999 7999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.+. +. ...+.+.+++.|++.|++.+...|.....+.|++|+++ |+++.++
T Consensus 106 ~~~~~~~~---~~----------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~ 160 (452)
T PRK11273 106 VMLFMGFV---PW----------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSV 160 (452)
T ss_pred HHHHHHhh---hc----------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHH
Confidence 88877665 10 01236678888999999999988888888999999887 9999999
Q ss_pred HHHHHhHHHH-HHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCL-FSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 195 ~~~~~~lg~~-~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
++.+.++|+. .+|..+..+....+|++.|++.+++.++..++
T Consensus 161 ~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 161 WNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999999875 45554333333458999999877665554443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=196.18 Aligned_cols=367 Identities=13% Similarity=0.076 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH-HHHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVT-FQAFSIIGLLGL 119 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~-~~~~~~~~~~~~ 119 (562)
++..++..++.....+.++.|+++++|.|..+.|++.+.+.+...+..++.|+++|| +||||.++. +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHH
Confidence 455778888888999999999999999999999999999999999999999999999 799887664 455555566665
Q ss_pred HhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh--hHHHHHH
Q 035554 120 SFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS--FYSYFYI 197 (562)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~ 197 (562)
.++ + +++.+++.|++++.+.+...|...++..|..|+++ |.. ..++.+.
T Consensus 82 ~~~---~--------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~ 132 (375)
T TIGR00899 82 AWN---R--------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRA 132 (375)
T ss_pred Hhc---c--------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHH
Confidence 554 2 36677788888888777788888888888776544 443 3577788
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCC
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGG 277 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (562)
..++|..++|.+++++.+..+|++.|++.+++.++..++.+...|+.++++++++...+
T Consensus 133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 191 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLE--------------------- 191 (375)
T ss_pred HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCcch---------------------
Confidence 88999999999999999888999999998887665555444333322111110000000
Q ss_pred CccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCccccc
Q 035554 278 GLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQI 357 (562)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (562)
. +......+.+.+-...... + ..........+.+..+..+.+..
T Consensus 192 -~-------------~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~~~~~g~~~~------ 235 (375)
T TIGR00899 192 -V-------------RGLLASRDTRLLFVACTLM--------------W--GCNILYIINMPLLIIHELGLPDK------ 235 (375)
T ss_pred -h-------------hhhhcCcchHHHHHHHHHH--------------H--HHHHHHHhhhHHHHHHHcCCCHH------
Confidence 0 0000000111110000000 0 00000111234444332222211
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q 035554 358 PPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSL 437 (562)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (562)
..+.......+......++.+ .+.+|+++ | +.+..+.++..+++...... .
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~g----~l~~r~g~-~-------~~~~~~~~~~~~~~~~~~~~-----------------~ 286 (375)
T TIGR00899 236 LAGLMMGTAAGLEIPFMLLAG----YLIKRFGK-R-------RLMLLAALAGVAFYTGLAAD-----------------N 286 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhHH----HHHHHhcc-h-------hHHHHHHHHHHHHHHHHHHH-----------------H
Confidence 111111111111122222222 33445433 1 12333433333333222221 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCc
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLND 517 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~ 517 (562)
+.+......++.+++.+...+..+.+..+..|++ +++++++++....+|..+++.+.+.+.+..
T Consensus 287 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~--------------- 350 (375)
T TIGR00899 287 SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERW--------------- 350 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 3444555667778888888888888888988875 579999999999999999999998765521
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 035554 518 GHLDRFFFLSATVTAMNLGVFVV 540 (562)
Q Consensus 518 ~~~~~~f~~~~~~~~~~~~~~~~ 540 (562)
+++..|++.+++.+++.+...+
T Consensus 351 -g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 351 -SYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred -cchhHHHHHHHHHHHHHHHHhe
Confidence 2355677777777666665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=197.04 Aligned_cols=342 Identities=13% Similarity=0.038 Sum_probs=212.9
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
++...+.+.++. +.+++|.|..+.++..+.+.++..++.++.|+++|| +||||++.++.++..++.+++..+ +
T Consensus 27 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~---~-- 99 (406)
T PRK15402 27 IANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLA---Q-- 99 (406)
T ss_pred hhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHH---c--
Confidence 344445555554 557899999999999999999999999999999999 799999999998888888877665 2
Q ss_pred CCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 129 RPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+.+.+++.|++.|++.+...+...+.+.|.+|+++ |.+..++.+....+|..++|.
T Consensus 100 ------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 155 (406)
T PRK15402 100 ------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPL 155 (406)
T ss_pred ------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999888889999999998877 788888888888899999999
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhh
Q 035554 209 VLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYE 288 (562)
Q Consensus 209 ~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (562)
+++++.+..+|++.|++.+++.+++.+..+...|+.+.+++++.+.++........
T Consensus 156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 211 (406)
T PRK15402 156 VGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLV------------------------ 211 (406)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHH------------------------
Confidence 99999888899999998777766655544333222111111100100000000000
Q ss_pred ccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhH
Q 035554 289 ANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIV 368 (562)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (562)
++++..+.-....... ...........+.+..+..+.+.. ..+.......+
T Consensus 212 --------~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~p~~~~~~~g~~~~------~~g~~~~~~~~ 262 (406)
T PRK15402 212 --------LKNRRFVAGALALGLV---------------SLPLLAWIALSPVILISGEQLSSY------EYGLLQVPVFG 262 (406)
T ss_pred --------HcCcHHHHHHHHHHHH---------------HHHHHHHHHHhHHHHHHHhCCCHH------HHHHHHHHHHH
Confidence 0000000000000000 000000011223333322221110 01111111111
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHH
Q 035554 369 STTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVL 448 (562)
Q Consensus 369 ~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 448 (562)
..++..++.+ .+.+|.+ ..+.+..+.++.+++.......... ...+.+++....++
T Consensus 263 ~~~~g~~~~g----~l~~r~~--------~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~ 318 (406)
T PRK15402 263 ALIAGNLTLA----RLTSRRP--------LRSLIRMGLWPMVAGLLLAALATVI------------SSHAYLWLTAGLSL 318 (406)
T ss_pred HHHHHHHHHH----HHHHhcC--------HHHHHHHHHHHHHHHHHHHHHHHHc------------ccccHHHHHHHHHH
Confidence 2222222222 2223332 3334566777666666666554211 11345666778899
Q ss_pred HHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 035554 449 LGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVM 499 (562)
Q Consensus 449 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~ 499 (562)
.+++++...+..+...... +++.+|++++++++.+.+|..+|+.+.+.+.
T Consensus 319 ~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 319 YAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred HHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999888877766544 4589999999999999999999988877553
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=207.09 Aligned_cols=179 Identities=11% Similarity=-0.039 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEV---NMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~---~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
|..+.++...++.....|.... .....+.+++|++..+.|++.+.+.+++.++++++|+++|| +||||++.++.++
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~ 103 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHH
Confidence 4455455555554444444322 22455778999999999999999999999999999999999 7999999998888
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.++.+.... . ...+.+.+++.|++.|++.+...|...+++.|++|+++ |+++
T Consensus 104 ~~~~~~~~~~~~~-~-----------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a 159 (467)
T PRK09556 104 SAICMLGFGASLG-S-----------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRF 159 (467)
T ss_pred HHHHHHHHHHHHh-c-----------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeee
Confidence 7777666554310 0 01248889999999999999999999999999999988 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccccc---chhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMG---YWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~---~~~~~f~i~~~~~~~~~~~~~ 238 (562)
++++..+.++|.++++.+..++.+.. +|+..|.+.++..++..++.+
T Consensus 160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 160 LGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred EEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887665532 588888876665554434333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=197.32 Aligned_cols=368 Identities=11% Similarity=0.001 Sum_probs=228.9
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q 035554 47 ANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSF 126 (562)
Q Consensus 47 ~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~ 126 (562)
.+-.++.+.+.+|. +++++|+|..+.+++.+.+.++..+++++.|+++|| +|||+++..+..+.+++.++++++ |
T Consensus 21 ~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a---~ 95 (393)
T PRK09705 21 MRPLLTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELY---P 95 (393)
T ss_pred cchhhhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHC---c
Confidence 33344556665655 677899999999999999999999999999999999 799999999999999999999887 3
Q ss_pred ccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHH
Q 035554 127 LLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFS 206 (562)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 206 (562)
+++.++++|+++|++.+...+....++.+++| ++ |+++.+++..+.++|..++
T Consensus 96 --------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 96 --------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred --------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999886 66 8899999999999999999
Q ss_pred hhhhhhccccc-chhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchh
Q 035554 207 ETVLVYAENMG-YWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVR 285 (562)
Q Consensus 207 ~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (562)
+.+++++.+.. +|+..+.+.++..++....++...++. |++++. .+ + . .
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~----~---~-~------ 198 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSARE----VASSHK------------TT----T---T-P------ 198 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC----CccccC------------CC----c---C-C------
Confidence 99999887764 899887665544443333333222211 110000 00 0 0 0
Q ss_pred hhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccc
Q 035554 286 EYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAF 365 (562)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (562)
.+. ..+...+.-...... . .........+.+.++.+ .+.+.. ..+.....
T Consensus 199 -------~~~-l~~~~~~~l~~~~~~-~--------------~~~~~~~~~~lp~~l~~-~g~s~~------~ag~~~~~ 248 (393)
T PRK09705 199 -------VRV-VFTPRAWTLGVYFGL-I--------------NGGYASLIAWLPAFYIE-IGASAQ------YSGSLLAL 248 (393)
T ss_pred -------ccc-ccCHhHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHH-cCCChh------hhhHHHHH
Confidence 000 000001100000000 0 00001111234445443 222211 12222223
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHH
Q 035554 366 DIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQ 445 (562)
Q Consensus 366 ~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (562)
..+..++...+.+ .+.+|.++ .+.+..+..+.+++.....+.. .+... ..
T Consensus 249 ~~i~~i~g~~~~g----~l~~r~~~--------~~~~~~~~~l~~~~~~~~~~~~----------------~~~~~--~~ 298 (393)
T PRK09705 249 MTLGQAAGALLMP----AMARHQDR--------RKLLMLALVLQLVGFCGFIWLP----------------LQLPV--LW 298 (393)
T ss_pred HHHHHHHHHHHHH----HHHhhccc--------hHHHHHHHHHHHHHHHHHHHcc----------------chHHH--HH
Confidence 3333333333333 23333322 2234555555555554433321 11111 12
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHH
Q 035554 446 YVLLGVSEAFVYVAQMEFFASQIP-NGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFF 524 (562)
Q Consensus 446 ~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f 524 (562)
.++.+++.+...|.......+..| ++.+|+.+|+.+....++..+++.+.+.+.+.+ +++...|
T Consensus 299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~---------------g~~~~~~ 363 (393)
T PRK09705 299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS---------------GNYLMDW 363 (393)
T ss_pred HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------CCchHHH
Confidence 345677777777877777777774 678999999999999999999999999776632 1234566
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccchh
Q 035554 525 FLSATVTAMNLGVFVVCARRYKSISLQ 551 (562)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (562)
.+.++.+++.....+.+.+++..|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK09705 364 AFHALCVVGLMIITLRFAPARFPQLWV 390 (393)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhc
Confidence 676777777666667777765555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=208.41 Aligned_cols=144 Identities=16% Similarity=0.238 Sum_probs=123.6
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchH
Q 035554 69 TNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAET 148 (562)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (562)
+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++.+... ....
T Consensus 69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 127 (481)
T TIGR00879 69 SSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAF--------------------ALSV 127 (481)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhcc--------------------ccch
Confidence 38999999999999999999999999999 79999999999999988888765421 1235
Q ss_pred HHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhh---hhcccccchhHHHHH
Q 035554 149 AIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVL---VYAENMGYWVLGFWI 225 (562)
Q Consensus 149 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~---~~l~~~~~~~~~f~i 225 (562)
+.++++|+++|++.+...+...+++.|++|+++ |+++.++++...++|..+++.++ +...+..+|++.|++
T Consensus 128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~ 201 (481)
T TIGR00879 128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL 201 (481)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence 678999999999999999999999999999888 99999999999999999999998 777677899999999
Q ss_pred HHHHHHHHHHHHHh
Q 035554 226 CAGCDILAFSSLLS 239 (562)
Q Consensus 226 ~~~~~~~~~~~~~~ 239 (562)
.++..++..+..++
T Consensus 202 ~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 202 QLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHHHHhc
Confidence 76655555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=207.16 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC
Q 035554 55 EVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCG 134 (562)
Q Consensus 55 ~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (562)
...+..++.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++++++++..++.++++++ +
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa---~-------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFV---Q-------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHH---h--------
Confidence 4445566777899999999999999999999999999999999 799999999999988888888776 2
Q ss_pred CCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcc
Q 035554 135 KIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAE 214 (562)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~ 214 (562)
+++.++++|++.|++.|+..|...+++.|.+|.+. |+..+++...+..+|.++++.++..+.
T Consensus 254 ------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 254 ------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999999877 899999999999999999987765543
Q ss_pred c-------------ccchhHHHHHHHHHHHHHHHHHHh
Q 035554 215 N-------------MGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 215 ~-------------~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
. ..+||+.|++.++..++++++.++
T Consensus 316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2 236899888877766655554433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-21 Score=204.14 Aligned_cols=434 Identities=13% Similarity=0.078 Sum_probs=238.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--------CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL--------RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV 106 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l--------g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~ 106 (562)
+..+...+..+...+....+.+..+. +++.+ +.+..+.+++.+++.++..+++++.|+++|| +||||+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~ 89 (479)
T PRK10077 12 SITLVATLGGLLFGYDTAVISGTVES-LNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLK 89 (479)
T ss_pred HHHHHHHHHHHhcCcccceehHhHHH-HHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHH
Confidence 44444444444444444434333333 44444 8899999999999999999999999999999 79999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 107 TFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
++.+++.++.++++++...-. + -..++......++++|+++|++.|...|...++++|++|+++
T Consensus 90 ~~~~l~~i~~~~~~~~~~~~~--~---------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~----- 153 (479)
T PRK10077 90 IAAVLFFISALGSAWPEFGFT--S---------IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI----- 153 (479)
T ss_pred HHHHHHHHHHHHHHhhccccc--c---------ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh-----
Confidence 999998888877765310000 0 000111235678899999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHH
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYAE--------NMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFS 258 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (562)
|+++++++..+..+|.++++.++..+. +..+||+.|++.++..++..+..++. ++.++....++..++..
T Consensus 154 -rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~ 231 (479)
T PRK10077 154 -RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFV-PETPRYLMSRGKQEQAE 231 (479)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHcCCHHHHH
Confidence 999999999999999999887665432 34689999998877666554443333 22111000011111111
Q ss_pred HHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhh--
Q 035554 259 QVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE-- 336 (562)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 336 (562)
+.. ++ ........ ...++....... +.........+....... ........+
T Consensus 232 ~~~----~~--~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 285 (479)
T PRK10077 232 GIL----RK--IMGNTLAT--QALQEIKHSLDH-GRKTGGKLLMFGVGVIVI-----------------GVMLSVFQQFV 285 (479)
T ss_pred HHH----HH--HcCChhHH--HHHHHHHHHHHH-hhhhhhhhcchhHHHHHH-----------------HHHHHHHHHHh
Confidence 000 00 00000000 000000000000 000000000000000000 000000000
Q ss_pred -------hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHH
Q 035554 337 -------MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIA 409 (562)
Q Consensus 337 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~ 409 (562)
+.+.+..+ .+.+.. ..........+..++..++.. .+.+|+++ ...+..+.+++
T Consensus 286 ~~~~~~~~~p~i~~~-~g~~~~------~~~~~~~~~~~~~~i~~~~~g----~l~dr~g~--------r~~~i~~~~~~ 346 (479)
T PRK10077 286 GINVVLYYAPEIFKT-LGASTD------IALLQTIIVGVINLTFTVLAI----MTVDKFGR--------KPLQIIGALGM 346 (479)
T ss_pred ChhHHHHHHHHHHHH-cCCCCc------hHHHHHHHHHHHHHHHHHHHH----HHHHHhcC--------hHHHHHhHHHH
Confidence 01111111 111100 011111111222222222222 23345443 22456677777
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHh-hhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q 035554 410 TVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAF-VYVAQMEFFASQIPNGLKSLGIALSMSSTAIGT 488 (562)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~ 488 (562)
+++++........ ....++.....++++.+.+. ..|..+.++.|..|++.||+++|+.+....+|+
T Consensus 347 ~v~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~ 413 (479)
T PRK10077 347 AIGMFSLGTAFYT-------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIAN 413 (479)
T ss_pred HHHHHHHHHHHhc-------------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHH
Confidence 7776666543110 11222334455555555554 347778999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhc
Q 035554 489 YVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQEGE 556 (562)
Q Consensus 489 ~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (562)
.+++.+.+.... ++|+.+. .+....|++.+++++++.+..+++.++.++++.|+.+++
T Consensus 414 ~~~~~~~p~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 471 (479)
T PRK10077 414 YFVSWTFPMMDK-------NSWLVAH---FHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471 (479)
T ss_pred HHHHHHhHHHHh-------ccchhhh---ccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 999877764431 1232111 122345677777777777777777788888877766554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=193.73 Aligned_cols=156 Identities=13% Similarity=-0.003 Sum_probs=122.1
Q ss_pred HhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 52 AGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 52 ~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
+...+.+ ..+++++|+|+.+.|++.+.+.+++.+++++.|+++|| +|||+++..+.+....+.. .... .
T Consensus 8 ~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~---~----- 76 (368)
T TIGR00903 8 VTFSPVL-SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLD---P----- 76 (368)
T ss_pred HHHHhhH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHH---h-----
Confidence 3333444 44577899999999999999999999999999999999 7999887655544444332 2221 0
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
.++..++++|+++|+|.+.. ++......|++|+++ |+++.++.+.+.++|..+++.+++
T Consensus 77 --------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~ 135 (368)
T TIGR00903 77 --------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGL 135 (368)
T ss_pred --------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14788999999999999864 555566689999877 999999999999999999999999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 212 YAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 212 ~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
++.+..|||..|++.+++.++..++++.
T Consensus 136 ~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 136 KIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999866665554444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-20 Score=195.23 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=145.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.|+|..+...+..++.....+.....+|. +.+++|+|..+.+++.+.+.++..++.+++|+++|| +||||++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHH
Confidence 45577777777777777776666666666 567899999999999999999999999999999999 7999999999998
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.++ + +.+.++++|+++|++.+...+...+++.|.+|+++ |+..
T Consensus 82 ~~i~~~l~~~~---~--------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~ 132 (394)
T PRK03699 82 MILAVAGLMFS---H--------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSR 132 (394)
T ss_pred HHHHHHHHHHc---c--------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHH
Confidence 88888887765 2 37778899999999999888889999999998877 8899
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcc-cccchhHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAE-NMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~-~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
.+..+...++|+.++|.+.+++. +..+||+.|.+.++..++..++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 133 LLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 88888888999999998888765 4579999998877665544443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-20 Score=193.51 Aligned_cols=174 Identities=12% Similarity=0.053 Sum_probs=150.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
|+.|+....+.+..++.....|.....+|. +.+++|+++.+.++..+.+.++..++.++.|+++|| +||||++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~ 93 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAV 93 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHH
Confidence 456777777777766666677776666666 456899999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+.+++.+++.++ + +++.+++.|+++|++.+...|...+++.|++|+++ |++
T Consensus 94 ~~~~~~~~~~~~---~--------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~ 144 (394)
T PRK10213 94 LLTLSCLLVSFA---N--------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPK 144 (394)
T ss_pred HHHHHHHHHHHH---C--------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHH
Confidence 999988887765 2 48889999999999999999999999999999888 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
+.++.....++|..++|.+++++.+..+|++.|++.+++.++..+
T Consensus 145 a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 145 ALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999989999999987765554433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-20 Score=194.28 Aligned_cols=168 Identities=12% Similarity=0.021 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.+++..++..++...+...++.. .+++|.+..+.+++.+.+.+...++.+++|+++|| +||||+++.+.++..+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHH
Confidence 466778888888888766665555554 56889999999999999999999999999999999 7999999999999988
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.++ + + .++.|+++|++.+...|+..+++.|++|+++ |+++.++
T Consensus 81 ~~~~~~~~---~--------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~ 128 (393)
T PRK11195 81 GCLLMLFG---I--------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGW 128 (393)
T ss_pred HHHHHHHH---H--------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 88776554 1 1 2678999999999999999999999999887 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
.+...++|..+||.++|++.+. .|+..+.+...+.+++.+..
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~ 170 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALFN 170 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 47777776666554444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-20 Score=189.89 Aligned_cols=348 Identities=20% Similarity=0.215 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+.+....++..+..+...+..+.|.+ ++|.+..+.+++.+...++..++.++.|+++|| +||||.+.++.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHH
Confidence 44566777888888888888888775 579999999999999999999999999999999 7999999999999999988
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
++... + +.+.++++|++.|++.+...+...++..|.+|+++ |++.+++.+.
T Consensus 80 ~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 130 (352)
T cd06174 80 LLAFA---S--------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSA 130 (352)
T ss_pred HHHHh---c--------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHH
Confidence 87765 2 37789999999999999999999999999999888 9999999999
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCC
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGG 277 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (562)
..++|..++|.+++.+.+..+|+..|++..+..++..+...... +..........
T Consensus 131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~------------ 185 (352)
T cd06174 131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLLLLLALAFF------------ 185 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH------------
Confidence 99999999999999999888999999988877666655543322 00000000000
Q ss_pred CccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCccccc
Q 035554 278 GLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQI 357 (562)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (562)
... ..........+.+..+..+.+ ..
T Consensus 186 --------------------------~~~----------------------~~~~~~~~~~~~~~~~~~~~~------~~ 211 (352)
T cd06174 186 --------------------------LLS----------------------FGYYGLLTYLPLYLQEVLGLS------AA 211 (352)
T ss_pred --------------------------HHH----------------------hHHHHHHHHHHHHHHHhcCCC------HH
Confidence 000 000000112333333211111 11
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q 035554 358 PPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSL 437 (562)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (562)
..+.......+...+..++.. ++.+|.++|+ . .+..+.++..++....... .
T Consensus 212 ~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~-----~--~~~~~~~~~~i~~~~~~~~-----------------~ 263 (352)
T cd06174 212 EAGLLLSLFGLGGILGALLGG----LLSDRLGRRR-----L--LLLIGLLLAALGLLLLALA-----------------P 263 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh-----H--HHHHHHHHHHHHHHHHHHh-----------------c
Confidence 122333333344444444444 3344554311 0 4566777777776666553 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCc
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLND 517 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~ 517 (562)
+.+......++.+++.+...+...++..+..|++.|++.+|+.+....+|..+++.+.+.+.+.
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~---------------- 327 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT---------------- 327 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------
Confidence 3566778899999999999999999999999999999999999999999999999998876541
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 035554 518 GHLDRFFFLSATVTAMNLGVFV 539 (562)
Q Consensus 518 ~~~~~~f~~~~~~~~~~~~~~~ 539 (562)
.++...|.+.+++.+++.+..+
T Consensus 328 ~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 328 GGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred cCcchHHHHHHHHHHHHHHHhe
Confidence 1234567777777776665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=196.15 Aligned_cols=174 Identities=18% Similarity=0.205 Sum_probs=150.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.+|+.+....+..++..+..+.+....+ .+++++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~ 85 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIV 85 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 45667788888888888888877776665 4677899999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+++.++ + +++.++++|++.|++.+...+...+++.|++|+++ |++
T Consensus 86 ~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~ 136 (405)
T TIGR00891 86 LFSAGTLACGFA---P--------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNK 136 (405)
T ss_pred HHHHHHHHHHHh---c--------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhH
Confidence 988888887765 2 37778999999999999999999999999999888 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccc--hhHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGY--WVLGFWICAGCDILAFS 235 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~--~~~~f~i~~~~~~~~~~ 235 (562)
+.++.+...++|..+++.+++.+.+..+ |++.|++.++..++..+
T Consensus 137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 183 (405)
T TIGR00891 137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877655 99999886665554433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=202.83 Aligned_cols=378 Identities=13% Similarity=0.089 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
....+.+..++..+....+...+| ++.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 344455555555555555555444 4566799999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+++..+ + +.+.++++|+++|++.+...|...+++.|.+|+++ |+++.+++
T Consensus 81 ~~~~~~~---~--------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~ 131 (485)
T TIGR00711 81 SLLCGVA---P--------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIW 131 (485)
T ss_pred HHHHhCc---C--------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence 9888765 2 37789999999999999999999999999999877 89999999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHH----HHhhhccc
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVA----SLRKINLE 271 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 271 (562)
+...++|..++|.+++++.+..+|++.|++..+..++..++.....++.+. .+.++.+.....+.. ........
T Consensus 132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~ 209 (485)
T TIGR00711 132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSE 209 (485)
T ss_pred HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998999999998877665555444333332111 111112211111100 00000000
Q ss_pred CCCCCCCccccchhh-----------------hhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehh---
Q 035554 272 MPTNGGGLFEVHVRE-----------------YEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTV--- 331 (562)
Q Consensus 272 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 331 (562)
.+. ..+.++.. .+....++. .+ .+.+ ..+..+.....
T Consensus 210 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~----------------~~~~~~~~~~~~~~ 266 (485)
T TIGR00711 210 GPE----RGWFDSNEILILSITGLVAIIAFVVWELTDDNPL--VD-LRLF----------------KYRNFTIGCVYMSL 266 (485)
T ss_pred CCC----CCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCc--cC-HHHH----------------cCCChHHHHHHHHH
Confidence 000 00000000 000000000 00 0000 00000000000
Q ss_pred -----hhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHH
Q 035554 332 -----TQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGL 406 (562)
Q Consensus 332 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ 406 (562)
.......+.|..+..+.+ ....+.......+..++..++..+ +.+|.+ +.+.+..|.
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~----l~~r~~--------~~~~~~~g~ 328 (485)
T TIGR00711 267 LGLGLYGSFYLLPLYLQQVLGYT------ALQAGLHILPVGLAPMLSSPIAGR----MGDKID--------PRKLVTIGL 328 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHH----HHhhcC--------cHHHHHHHH
Confidence 000112344444322211 111222222333333344444432 223332 233456677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHH
Q 035554 407 AIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAI 486 (562)
Q Consensus 407 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l 486 (562)
++.+++.....+.. ..+.+.+......++.|++.+...++......+..|++++|+++|++++.+.+
T Consensus 329 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 395 (485)
T TIGR00711 329 ILYAVGFYWRAFTF-------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQL 395 (485)
T ss_pred HHHHHHHHHHhccC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHH
Confidence 76666666554210 11244555666788999999999888888888999999999999999999999
Q ss_pred HHHHHHHHHHHhHh
Q 035554 487 GTYVCSMILSVVMV 500 (562)
Q Consensus 487 g~~lg~~l~~~i~~ 500 (562)
|+.+|+.+.+.+.+
T Consensus 396 g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 396 GGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=201.56 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=125.0
Q ss_pred HHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCc
Q 035554 60 LFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQL 139 (562)
Q Consensus 60 ~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (562)
..+.+++|++..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++..++.+++.++.
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~---------------- 105 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS---------------- 105 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence 34567899999999999999999999999999999999 7999999999988888888877652
Q ss_pred CCCCCCchHHHHHH-HHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccc
Q 035554 140 CDPHSPAETAIFYI-SIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGY 218 (562)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~ 218 (562)
+.+.+++ .|++.|++.+...+...+++.++++ ++ |+++.++.+.+.++|..++|.+++++.+.+|
T Consensus 106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g 171 (455)
T TIGR00892 106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171 (455)
T ss_pred -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence 2445554 5688899998776677778888885 55 8999999999999999999999999988889
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q 035554 219 WVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 219 ~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|++.|++.+++.+++.+..++.
T Consensus 172 wr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 172 WRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888766555544433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=197.54 Aligned_cols=167 Identities=21% Similarity=0.271 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLS 120 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~ 120 (562)
++..++..+......+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++|| +||||++.++.++.+++.+...
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhh
Confidence 456677777777788888878899999999999999999999999999999999999 7999999999999998855555
Q ss_pred hhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHh
Q 035554 121 FATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALN 200 (562)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 200 (562)
++ + +.+.++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...+
T Consensus 81 ~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~ 131 (352)
T PF07690_consen 81 FA---S--------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFS 131 (352)
T ss_dssp HH---C--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHH
T ss_pred hh---h--------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhh
Confidence 54 2 25589999999999999999999999999999988 9999999999999
Q ss_pred HHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 201 LGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 201 lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 132 ~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 132 LGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 9999999999999988899999999998887776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=201.67 Aligned_cols=379 Identities=10% Similarity=0.020 Sum_probs=222.9
Q ss_pred hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC
Q 035554 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS 144 (562)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (562)
+++++..+.|.+.+.+.+++.++.+++|+++|| +|||+++..+.++..++.+++.++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 689999999999999999999999999999999 79999999999988888777654411
Q ss_pred CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc-cchhHHH
Q 035554 145 PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM-GYWVLGF 223 (562)
Q Consensus 145 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f 223 (562)
.+.+.+++.|+++|++.+...|....++.|++|+++ |+++.++.+.+.++|..++|.+++++.+. .+|+..|
T Consensus 129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f 201 (465)
T TIGR00894 129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIF 201 (465)
T ss_pred -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeh
Confidence 125678899999999999999999999999999888 99999999999999999999999999887 4999999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhH
Q 035554 224 WICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKF 303 (562)
Q Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (562)
++.++..++..++++...++.+.+++..++.. .+......+. ...+ .....++++..+.
T Consensus 202 ~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~i~~~~~~--~~~~-----------------~~~~~~~~~~~~~ 260 (465)
T TIGR00894 202 YVFGIVGCAWSLLWFVFPADDPSIHPCISKFE--KKYINSSLQG--QKGS-----------------TRQSLPIKAIPKS 260 (465)
T ss_pred hhhhHHHHHHHHHHHHHhcCCcccCCCCCHHH--HHHHHhhccc--ccCC-----------------CCCCCCHHHHhcC
Confidence 99887766655554443332222111111100 0000000000 0000 0000011110000
Q ss_pred HHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHH
Q 035554 304 LDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVP 383 (562)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 383 (562)
..........- ...........+.|.|+.+..+.+.. ..+.......+...+...+.+++.+.
T Consensus 261 ~~~~~~~~~~~-----------~~~~~~~~~~~~lp~~l~~~~g~s~~------~~g~~~~~~~~~~~i~~~~~g~l~d~ 323 (465)
T TIGR00894 261 LPVWAIWFAIF-----------GHFWLYTILPTYLPTFISWVLRVSGK------ENGLLSSLPYLFAWLCSIFAGYLADF 323 (465)
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhCcChH------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 00000011122556666654443321 23334444455555555666655443
Q ss_pred hhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHH
Q 035554 384 LYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEF 463 (562)
Q Consensus 384 ~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 463 (562)
+.+|... +.....++..+..+...+...+.... ...+.+..+..+.+.+.+.+...+..+..
T Consensus 324 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 385 (465)
T TIGR00894 324 LKSSKTL----SLTAARKIFNGIGGLGPGIFAYALPY--------------LSAAFYLTIIILTLANAVSSGPLAGVLIN 385 (465)
T ss_pred HHHcCCC----cHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCchHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 3322111 00111122222222211211111110 01222333444555555555555666666
Q ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 464 FASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 464 ~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
..+.+|+ .+|..+|+.++...+|+.+++.+.+.+.+. -..+.+...|.+.+++.+++.+++...
T Consensus 386 ~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~-------------~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 386 SLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQ-------------DSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCC-------------CCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 6677776 899999999999999999999887754321 011345677888888888777666544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-20 Score=190.58 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=139.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|.++.++...++..++...+.+.+|.|.+ ++|.|..++|++.+.+.++..+++++.|+++|| +||||++..+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHH
Confidence 467899999999999999999999999887 579999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+.++ + +.+.++++|++.|++.+...|...+.+.+..++++ |++.++
T Consensus 83 ~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 133 (381)
T PRK03633 83 AGCAGLGLM---V--------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLA 133 (381)
T ss_pred HHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 888877765 2 37789999999999999988888888888887766 889999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLG 222 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~ 222 (562)
+++...++|..++|.+++.+.+...++..
T Consensus 134 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 162 (381)
T PRK03633 134 AYMMVYYLGTVLGQLLVSKVSTELMSVLP 162 (381)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 99999999999999999998775433333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-20 Score=197.06 Aligned_cols=176 Identities=11% Similarity=0.043 Sum_probs=134.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
++++.+.......++..+..+...+.++ ++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++..+.++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~ 110 (476)
T PLN00028 33 PHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLML 110 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence 3445555555556666666666655444 5677899999999999999999999999999999999 7999999999988
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.++++++ + +.+.++++|++.|++.+... ....++.|++|+++ |+++
T Consensus 111 ~~~~~~~~~~~---~--------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a 160 (476)
T PLN00028 111 TAPAVFCMSLV---S--------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTA 160 (476)
T ss_pred HHHHHHHHHHh---c--------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHH
Confidence 88888777765 2 36678889999999988654 44567899999888 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccc---------ccchhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSYFYIALNLGCLFSETVLVYAEN---------MGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~---------~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.++.+...++|+.+++.+.+.+.. ..|||+.|++.+++.++..++.++
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888877666654421 248999999888766655444433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-19 Score=187.87 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=139.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
+.||.+....++.++..++.+....+++.|+ +++|+|..+.+++.+.+.++..++.++.|+++|| +||||++..+.++
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHH
Confidence 4568888888898888888888888888888 4689999999999999999999999999999999 7999999999998
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++..... . ..+.+.+++.|++.|++.+...+...+.+.+.+|+++ |+++
T Consensus 88 ~~~~~~~~~~~~~-~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~ 142 (402)
T TIGR00897 88 WCVGHAAFIVFGL-G------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSA 142 (402)
T ss_pred HHHHHHHHHHHhc-c------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHH
Confidence 8888765532210 0 0136677889999999988877777888889888877 9999
Q ss_pred HHHHHHHHhHHH-HHHhhhhhhcccccchhHHHHHHHH
Q 035554 192 YSYFYIALNLGC-LFSETVLVYAENMGYWVLGFWICAG 228 (562)
Q Consensus 192 ~~~~~~~~~lg~-~~~~~~~~~l~~~~~~~~~f~i~~~ 228 (562)
.++++...++|. .++|.+++++.+..||+..++....
T Consensus 143 ~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 143 VGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 999999999996 5889898998887886655554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-19 Score=187.79 Aligned_cols=177 Identities=11% Similarity=0.063 Sum_probs=128.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHH-HHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMG-SLYLSSLMGAFLSDSYLGRYLTCV-TFQAF 111 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~i~-~~~~~ 111 (562)
....+.+++..++.+++.....+.++.|+++++|+|.++.|++.+.+.+ +..++++++|+ +|| +||||.++ .+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHH
Confidence 4577888888999999999999999999999999999999999876655 55566666666 999 79998755 45555
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++..+..++ + +.+.+++.+.+.+...+...|....+..|..++++ |..+..
T Consensus 92 ~~~~~~~~~~~---~--------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (393)
T PRK15011 92 GVLACTLFAWN---R--------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG----REAVMF 144 (393)
T ss_pred HHHHHHHHHHh---h--------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc----chHHHH
Confidence 55666655554 1 25555444444443344667788888887665443 002334
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.++.+.+.++|..++|.+++++.+..||+..|++.++..++..+..+.
T Consensus 145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999999999999998889999999887766555544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-20 Score=193.90 Aligned_cols=176 Identities=11% Similarity=0.009 Sum_probs=148.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+|+.++.+.+..++.......+.... ..+++++|++..+.|++.+.+.++..+++++.|+++|| +||||++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHH
Confidence 356666777776666666666665544 47899999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+.++.++++++ + +.+.++++|++.|++.+...|....++.|++|+++ |++.
T Consensus 83 ~~~~~~~~~~~---~--------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~ 133 (412)
T TIGR02332 83 WGIASTATMFA---T--------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA 133 (412)
T ss_pred HHHHHHHHHHh---c--------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence 99999888876 2 36779999999999999999999999999999877 8999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccc------ccchhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAEN------MGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~------~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.++++...++|..+++.+++++.+ ..|||+.|++.++..++..++.+
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988753 36999999987766554444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-20 Score=189.90 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=130.5
Q ss_pred HHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 035554 51 FAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRP 130 (562)
Q Consensus 51 ~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
.|... .+.+++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++.++ +
T Consensus 19 ~~~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~---~---- 89 (377)
T TIGR00890 19 VYTWT-LLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIA---D---- 89 (377)
T ss_pred Hhhhh-hHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHH---H----
Confidence 44443 45667788999999999999999999999999999999999 799999999999999999888876 2
Q ss_pred CCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhh
Q 035554 131 HGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVL 210 (562)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 210 (562)
+.+.++++|.+.|++.+...+.......+++| ++ |+++.+++..+.++|..+++.+.
T Consensus 90 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~ 146 (377)
T TIGR00890 90 ----------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLI 146 (377)
T ss_pred ----------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHH
Confidence 37788999999999999888888888888876 45 78999999999999988776677
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 211 VYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 211 ~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+.+.+..+|++.|++.++..++..+..+
T Consensus 147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 147 TSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 7776778999999988776665544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-19 Score=186.32 Aligned_cols=175 Identities=17% Similarity=0.091 Sum_probs=146.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
+|..+.+....+....+.....+.+|. +.+++|.|+.+.+++.+.+.++..++.++.|+++|| +||||++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHH
Confidence 344455555555555666666665554 567799999999999999999999999999999999 799999999999988
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++..+ + +.+.++++|++.|++.+...+...+++.|.+|+++ |++.++
T Consensus 82 ~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 132 (385)
T TIGR00710 82 LSSLGLALS---N--------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYS 132 (385)
T ss_pred HHHHHHHHH---c--------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHH
Confidence 888887765 2 37778899999999999999999999999999877 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+.+...++|..++|.+++++.+..+|+..|++.++..++..+..+.
T Consensus 133 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 133 ILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988889999998877766655554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-19 Score=188.04 Aligned_cols=174 Identities=16% Similarity=0.100 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC---CChhhhh---hHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLR---QTNAEAS---NTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg---~s~~~~~---~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+....+..+++.+-... ......++.++++ .+..+.+ .+.+...++..++.+++|+++|| +||||++..+.+
T Consensus 24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~ 101 (432)
T PRK10406 24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVC 101 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 33334446666666555 4556678888874 4555433 34444455556999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
++.++.++++++ |+... ........++++|+++|++.|...|...+++.|++|+++ |++
T Consensus 102 ~~~~~~~~~~~~---~~~~~------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~ 160 (432)
T PRK10406 102 MMCFGSLVIACL---PGYET------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGF 160 (432)
T ss_pred HHHHHHHHHhhc---CCchh------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccH
Confidence 999999988776 32000 000124568899999999999999999999999999888 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAE--------NMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~~ 233 (562)
..++.+...+.|..+++.+...+. +.+|||.+|++.++..++.
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 999988888888888876654433 2579999999877655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-19 Score=188.30 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=150.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
++.++.+.+..++.....+...+.+|. +.+++|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~ 79 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCV 79 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHH
Confidence 356777888888888888888887766 566799999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.++ + +.+.+++.|++.|++.+...+....++.|++|+++ |++..+
T Consensus 80 ~~~~l~~~~---~--------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 130 (382)
T PRK10091 80 IGNAMFTLS---S--------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVA 130 (382)
T ss_pred HHHHHHHHh---C--------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHH
Confidence 999888776 2 37889999999999999988888888999988766 889999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
++..+.++|..++|.+++++.+..+|++.|++.++..++..+..
T Consensus 131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999998887655554433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=194.27 Aligned_cols=387 Identities=10% Similarity=0.028 Sum_probs=221.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+|.+....++..++++...++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +||||++.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 578888888888889898999999999999999999999999999999999999999999999 7999999887665554
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..........+... .......+++.+..+.+.....+.. .++.++.. +.++..++.
T Consensus 89 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~g~~~g~ 145 (420)
T PRK09528 89 LFGPFFIYVFAPLLQ---------------YNILLGAIVGGIYLGFGFLAGAGAI----EAYIERVS----RRSGFEYGR 145 (420)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhhhccchhhh----hhHHHHHH----hhccccchh
Confidence 433221110000000 0001111222333333333333333 33222111 115667788
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.+...++|..++|.+++++.+ .+|+..|++.++..++..++.+..+++.+++ ++.++ ...+.
T Consensus 146 ~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~ 207 (420)
T PRK09528 146 ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVAN----------------ALGAN 207 (420)
T ss_pred hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhcc----------------chhcc
Confidence 888889999999999998876 5899999887776666555544433321111 00000 00000
Q ss_pred CCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeeh--------hhhhhhhhhHHHHHhh
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCT--------VTQVEEMLSLFVEQGA 346 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~ 346 (562)
... ...+ +.... .+ .+..+.+.. .....++.+.|..+..
T Consensus 208 ~~~--~~~~-------~~~~~-l~-----------------------~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T PRK09528 208 ASA--VSLK-------DALAL-LK-----------------------LPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF 254 (420)
T ss_pred ccc--ccHH-------HHHHH-cc-----------------------CCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 00000 00 000010000 0011123344443321
Q ss_pred hccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035554 347 AMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKY 426 (562)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~ 426 (562)
.. ...+ ....+....++.+...+..++.. .+.+|+++ .+.+..+.++.+++....++.
T Consensus 255 ~~-~~~~--~~~~g~~~~~~~~~~~~~~~~~g----~l~dr~g~--------~~~~~~~~~l~~~~~~l~~~~------- 312 (420)
T PRK09528 255 AT-PEQG--TRVFGYLNSFQVFLEALIMFFAP----FIINRIGA--------KNALLLAGTIMAVRIIGSGFA------- 312 (420)
T ss_pred hc-cCcc--hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCc--------chhhHHHHHHHHHHHHHHHhc-------
Confidence 11 0100 00112222223333333333333 33445543 223556666666666555443
Q ss_pred hccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhcC
Q 035554 427 ASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIAL-SMSSTAIGTYVCSMILSVVMVLTTKN 505 (562)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~lg~~l~~~i~~~~~~~ 505 (562)
.+.++++...++.+++.....+...+++.+..|++.+++..+. +++...+|..+++.+.|.+.+..
T Consensus 313 ----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~--- 379 (420)
T PRK09528 313 ----------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI--- 379 (420)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 3455666777888888888888888999999999999988765 67888999999999988766522
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 506 GKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 506 ~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
+++..|.+.+++.++..++.++..++
T Consensus 380 -------------G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 380 -------------GFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23567777777777666555554443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-19 Score=189.48 Aligned_cols=177 Identities=11% Similarity=0.025 Sum_probs=131.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--CCChhhhhhHH-----HHHHHHHHHHHHHHHHHhhhcccchHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL--RQTNAEASNTF-----SRWMGSLYLSSLMGAFLSDSYLGRYLTC 105 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Grk~~i 105 (562)
++|..+...+..+++.+-...+....+.++.+++ +.++. .+++. +...++..++.++.|+++|| +|||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHH
Confidence 3466667777777777776666555566666665 66665 34443 23445567888889999999 7999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
..+.+++.++.++++++ |+... ........++++|+++|++.|...|....++.|++|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~---~~~~~------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~---- 158 (438)
T PRK09952 98 MLTVWMMGIATALIGLL---PSFST------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK---- 158 (438)
T ss_pred HHHHHHHHHHHHHHhcC---CcHHH------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC----
Confidence 99999999999988887 32000 000012258889999999999999999999999999888
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHH
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYAE--------NMGYWVLGFWICAGCDIL 232 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~ 232 (562)
|+...+..+.+..+|..++..+..++. +.+|||..|++.++..++
T Consensus 159 --rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 159 --KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 888888888888898888876665543 247999999987765433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-19 Score=187.75 Aligned_cols=172 Identities=14% Similarity=0.084 Sum_probs=144.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
.+|..+.+....++..+......+.+|. +.+++|+|..+.+++.+.+.++..++.++.|+++|| +||||++.++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence 4567777777777777777666666655 456799999999999999999999999999999999 79999999999988
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.+++... + +.+.+++.|++.|++.+...+....+..|.+++++ ++++.
T Consensus 84 ~~~~~~~~~~---~--------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 134 (394)
T PRK11652 84 ILGTLVALFA---H--------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHAN 134 (394)
T ss_pred HHHHHHHHHH---c--------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 8888877665 2 37778999999999998888888888889887766 88899
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
++.+.+..++..++|.+++++.+..+|++.|++.++..++..+
T Consensus 135 ~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 135 SLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888999999987765554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-19 Score=188.28 Aligned_cols=168 Identities=11% Similarity=0.099 Sum_probs=144.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+++......+..+...+..+.... ...++++++|+|+.+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFY-IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence 3345566666666666666666544 4456778999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+.+.++. +.+.++++|++.|++.+...+....++.|.+|+++ |+++
T Consensus 93 ~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~ 143 (426)
T PRK12307 93 YSVGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA 143 (426)
T ss_pred HHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence 999998887762 37789999999999999999999999999999888 8999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCD 230 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~ 230 (562)
.++++.+.++|..+++.+.+.+.+..+|++.|++..+..
T Consensus 144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~ 182 (426)
T PRK12307 144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPV 182 (426)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 999999999999999999999888889999998865443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-19 Score=186.18 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=134.8
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
+......+.+|. +.+++|.+..+.++..+.+.++..+++++.|+++|| +|||+++..+.+++.++.+++.++ +
T Consensus 30 ~~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a---~-- 102 (413)
T PRK15403 30 LTTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFT---T-- 102 (413)
T ss_pred HHHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHc---C--
Confidence 333444444444 677899999999999999999999999999999999 799999999999999988888776 2
Q ss_pred CCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 129 RPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+.+.++++|+++|++.+...+....++.|.+|+++ |++.+++.+...++|..++|.
T Consensus 103 ------------------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 103 ------------------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999998767777788899998877 889999999999999999999
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 209 VLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 209 ~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++++.+..||++.|++.++..+++.+..+
T Consensus 159 lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 159 SGAALMHFVHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999998888999999988877666655433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-19 Score=190.69 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=130.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhh-hhh-----HHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE-ASN-----TFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVT 107 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~ 107 (562)
+|..+...+..+++.+-+..+ .+...++.++++.+..+ ..+ +.++..++..+++++.|+++|| +|||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 355666667777777655544 45556788887643322 122 2466778899999999999999 799999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKS 187 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 187 (562)
+.+++.++.++++++ |++...+ ...+.+++++|+++|++.|...+...+++.|++|+++
T Consensus 93 ~~~l~~i~~~~~a~~---~~~~~~g------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------ 151 (490)
T PRK10642 93 TIVIMSISTFCIGLI---PSYATIG------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------ 151 (490)
T ss_pred HHHHHHHHHHHHHhc---ccHHHHH------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------
Confidence 999999999999887 3310000 0001248899999999999999999999999999988
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHH
Q 035554 188 KTSFYSYFYIALNLGCLFSETVLVYAE--------NMGYWVLGFWICAGCDIL 232 (562)
Q Consensus 188 r~~~~~~~~~~~~lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~ 232 (562)
|+...++...+.++|..+++.+...+. ..+|||+.|++.++..++
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 889999988888888887775554332 257999999987654443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-21 Score=202.10 Aligned_cols=376 Identities=11% Similarity=0.130 Sum_probs=254.6
Q ss_pred hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC
Q 035554 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS 144 (562)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (562)
+++++..+.+++.+.+..|+.++++++|+++|| +|-|+++..+.++.+++.++.++++..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~------------------- 126 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASI------------------- 126 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 688999999999999999999999999999999 799999999999999999999988531
Q ss_pred CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc-cchhHHH
Q 035554 145 PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM-GYWVLGF 223 (562)
Q Consensus 145 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f 223 (562)
+++.+++.|+++|++.|...|++..+.+++.|.+| |+++.++.+.+..+|.+++-.++|++.+. .||+.+|
T Consensus 127 --~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sif 198 (466)
T KOG2532|consen 127 --GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIF 198 (466)
T ss_pred --cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHH
Confidence 34578999999999999999999999999999999 99999999999999999999999999988 8999999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCCCCC-chhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchh
Q 035554 224 WICAGCDILAFSSLLSGTLRYRHFKPSGN-PLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFK 302 (562)
Q Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (562)
++.+++.++..++++....+.+.++|.-+ ++++... +.+.. ...+.....+|++..+
T Consensus 199 Y~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~------~~k~~----------------~~~~~~~~vP~~~i~t 256 (466)
T KOG2532|consen 199 YVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIE------KGKSE----------------AHVKKKPPVPYKAILT 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHH------hcccc----------------cccCCCCCCCHHHHHc
Confidence 99999888888777766554433332211 1111000 00000 0000012444544332
Q ss_pred HHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHH
Q 035554 303 FLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIV 382 (562)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 382 (562)
-....++.....+ ..|. .....++.|.|+.+..+.|.. .++.++++..+...+...+.+.+.+
T Consensus 257 s~~vwai~~~~f~--------~~~~---~~~l~~y~PtY~~~VL~f~v~------~~G~~salP~l~~~~~k~~~g~lsD 319 (466)
T KOG2532|consen 257 SPPVWAIWISAFG--------GNWG---FYLLLTYLPTYLKEVLGFDVR------ETGFLSALPFLAMAIVKFVAGQLSD 319 (466)
T ss_pred CHHHHHHHHHHHH--------HHHH---HHHHHHHhhHHHHHHhCCChh------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111110000 0011 111233678888888777644 4666777777777777666666665
Q ss_pred HhhhhhccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhH
Q 035554 383 PLYLKVAKRRPKTPSELQRV--GIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQ 460 (562)
Q Consensus 383 ~~~~r~~~~~~~~~~~~~~i--~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~ 460 (562)
.+..| .. .....+++ .++....+++++..++.. +.+. +.....+.++++........
T Consensus 320 ~l~~~-~l----s~t~~rkifn~i~~~~~ai~l~~l~~~~---------------~~~~-~~a~~~l~~~~~~~g~~~~G 378 (466)
T KOG2532|consen 320 RLTFR-IL----SETTVRKIFNTIAFGGPAVFLLVLAFTS---------------DEHR-LLAVILLTIAIGLSGFNISG 378 (466)
T ss_pred HHhhc-cC----chHhHHHHHHhHHHHHHHHHHHeeeecC---------------CCcc-hHHHHHHHHHHHHcccchhh
Confidence 55544 21 11223333 455666666665555541 1111 22222233333333333333
Q ss_pred HHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 035554 461 MEFFASQ-IPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFV 539 (562)
Q Consensus 461 ~~~~~~~-~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~ 539 (562)
....... + +++-+..+|+.+....+.++++|.+++.+.+ ++ +...|+..|++.+++.+++.++|.
T Consensus 379 f~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~------------~~-t~~eW~~VF~i~a~i~~~~~i~f~ 444 (466)
T KOG2532|consen 379 FYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT------------DN-TREEWRIVFLIAAGILIVGNIIFL 444 (466)
T ss_pred hHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC------------CC-CHHHHHHHHHHHHHHHHHhchhee
Confidence 4444444 5 4779999999999999999999999886543 11 345678999999999999998888
Q ss_pred HHh
Q 035554 540 VCA 542 (562)
Q Consensus 540 ~~~ 542 (562)
++.
T Consensus 445 ~f~ 447 (466)
T KOG2532|consen 445 FFG 447 (466)
T ss_pred Eee
Confidence 875
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=189.85 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=141.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
+|+......+..++..+..+.... ...++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHH
Confidence 344555555555555555554444 4445667799999999999999999999999999999999 79999999999888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.+++.+. + +.+.+++.+++.|++.+...+...+++.|.+|+++ |+++.
T Consensus 93 ~~~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 143 (398)
T TIGR00895 93 SVFTLLCALA---T--------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAV 143 (398)
T ss_pred HHHHHHHHHc---c--------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhH
Confidence 8888777665 2 36778899999999999999999999999999877 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
++++...++|..+++.+++++.+..+|+..|++.++...+..+
T Consensus 144 ~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 186 (398)
T TIGR00895 144 GLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL 186 (398)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence 9999999999999999999998888999999887544443333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=201.14 Aligned_cols=351 Identities=30% Similarity=0.469 Sum_probs=211.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC
Q 035554 102 YLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED 181 (562)
Q Consensus 102 k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 181 (562)
.|+++++.+++.+|++++.+++..+. . +++.+...+++++.++++|.|+.+|++.++++||+++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~-~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPS-L-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSS-C-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcch-h-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 47899999999999999887754222 1 123356789999999999999999999999999999874
Q ss_pred chhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeec-CCCCCchhH-HHH
Q 035554 182 PKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF-KPSGNPLSR-FSQ 259 (562)
Q Consensus 182 ~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 259 (562)
++ .|.++++++|++.|+|+.+++.+.+++.+.+||.+.|.++.++++++.++++..++++.++ +|.+.+..+ ...
T Consensus 67 ~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~ 143 (372)
T PF00854_consen 67 DS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKL 143 (372)
T ss_dssp TT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHH
T ss_pred hh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHH
Confidence 21 2789999999999999999999999999999999999999999999999999988888777 556665555 334
Q ss_pred HHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhccccc--------ccCCCC--Cccceee
Q 035554 260 VIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADIT--------TNEDQN--PNQWRLC 329 (562)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~l~ 329 (562)
+.....+++....+......++.....+. ....+.....+........... .+++.. .+....+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 217 (372)
T PF00854_consen 144 VLVAAFKKRKLAVPKGSSWLDWALFQYSE------RSIFGIIVFIRAAVIFFPEIFFWALFCQVQRVEELKALIRFLPIF 217 (372)
T ss_dssp HHHHHHHHHCCCH-HHHHHHHHHHHHHCC------CCCCCCCCHHHHHHHHCCCHHHHTTTSSTTTHHHCCHHHCHHHCC
T ss_pred HHHHHHHHhhcccccchHHHHHhhhhhhh------hhhhhhhhhccchhhhhhhhhhcccCCccceeeeeeeeeeccccC
Confidence 44444444433221110001110000000 0000000000100000000000 000000 0000011
Q ss_pred hh-----hhhhhhhhHHHHHhhhccCCCcc-cccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHH
Q 035554 330 TV-----TQVEEMLSLFVEQGAAMNTGVSN-FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVG 403 (562)
Q Consensus 330 ~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~ 403 (562)
.. ....+.......|...+|....+ +.+|++.++.+|++.++++.|+.+++++|+.++ ++ .+++..++.
T Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~----~~~~~~k~~ 292 (372)
T PF00854_consen 218 LFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GI----QPSPPQKFG 292 (372)
T ss_dssp CHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-----------HHHHH
T ss_pred eEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cc----cchhhhhhh
Confidence 00 11111333455555566666666 899999999999999999999999999988872 22 467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHH
Q 035554 404 IGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSS 483 (562)
Q Consensus 404 ~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~ 483 (562)
+|+++..++++.....+..|.......+ ..+.+|+++.+++.+++|.+..+...+..+|.+|++..+..+|++...
T Consensus 293 ~G~~~~~~~~~~~~~v~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~ 368 (372)
T PF00854_consen 293 IGMVFAILAMFVAAIVEIRRLCYAQPCG----KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFAL 368 (372)
T ss_dssp HH-HHHHHHHHTTTHHHH---HH----T----T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccC----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 9999999999998888776655443322 234477789999999999999999999777777777777777766654
Q ss_pred H
Q 035554 484 T 484 (562)
Q Consensus 484 ~ 484 (562)
.
T Consensus 369 ~ 369 (372)
T PF00854_consen 369 S 369 (372)
T ss_dssp H
T ss_pred h
Confidence 4
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-19 Score=191.17 Aligned_cols=181 Identities=13% Similarity=0.056 Sum_probs=135.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSV----LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
+++.+....+..++..+....+....+..-.+. .+.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~ 92 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGME 92 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHH
Confidence 334444555555555555544444444332221 23456678899999999999999999999999 7999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
.+++.++.+++.++ ++ .....+...++++|+++|++.|...+..+.++.|.+|+++ |
T Consensus 93 ~~~~~v~~~~~~~~---~~--------------~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------R 149 (502)
T TIGR00887 93 LIIMIIATVASGLS---PG--------------SSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------R 149 (502)
T ss_pred HHHHHHHHHHHHHc---cC--------------cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------H
Confidence 99999988877765 21 0001125689999999999999999999999999999988 9
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhccc-----------------------ccchhHHHHHHHHHHHHHHHHH
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAEN-----------------------MGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~-----------------------~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+++.++.+....+|..+++.++..+.. ..+||+.|.+.++..++..+..
T Consensus 150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877654321 2479999988776665544443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=194.53 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=127.1
Q ss_pred HHHHhhCCC---hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCC
Q 035554 61 FAKSVLRQT---NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIG 137 (562)
Q Consensus 61 y~~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (562)
-+.++++++ ..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.++.+++ +
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~---~----------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFS---P----------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHc---c-----------
Confidence 356789998 8999999999999999999999999999 799999999999998888887776 3
Q ss_pred CcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccccc
Q 035554 138 QLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMG 217 (562)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~ 217 (562)
+++.++++|++.|++.+...+...+++.|.+|+++ |+.+.++...+..+|.+++|.++.++.+
T Consensus 179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 241 (505)
T TIGR00898 179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD-- 241 (505)
T ss_pred ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence 37889999999999999999999999999999888 8899999989999999999988766643
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 035554 218 YWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 218 ~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
||+.|++.++..++..+..++
T Consensus 242 -wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 242 -WRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh
Confidence 999999887766655555443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-18 Score=183.80 Aligned_cols=172 Identities=12% Similarity=0.033 Sum_probs=126.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHH-HHH-----HHHHHHHHHHHHHHhhhcccchHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTF-SRW-----MGSLYLSSLMGAFLSDSYLGRYLTCVT 107 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~-~~~-----~~~~~~~~~~~G~laDr~~Grk~~i~~ 107 (562)
++.....++..+++.+-...+.... ..+.++++.++.+.+... +.. .+...+++++.|+++|| +||||++..
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~ 91 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYA-TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHH
Confidence 3555666666666666666655544 467788998887755433 222 22224678899999999 799999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKS 187 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 187 (562)
+.+++.++.+++.++ +++.. -.......++++|+++|++.+...|....++.|++|+++
T Consensus 92 ~~~~~~~~~~l~~~~---~~~~~------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------ 150 (434)
T PRK15075 92 TLSIMASGTLLIAFV---PGYAT------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------ 150 (434)
T ss_pred HHHHHHHHHHHHHhC---CcHHH------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------
Confidence 999999999988876 22000 000001257889999999999999999999999999988
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhhhhc--------ccccchhHHHHHHHH
Q 035554 188 KTSFYSYFYIALNLGCLFSETVLVYA--------ENMGYWVLGFWICAG 228 (562)
Q Consensus 188 r~~~~~~~~~~~~lg~~~~~~~~~~l--------~~~~~~~~~f~i~~~ 228 (562)
|++..+++....++|..+++.+++.+ .+.+|||+.|++..+
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 99999998888888888877776655 246799999987544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=190.46 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=125.8
Q ss_pred HHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCC
Q 035554 59 VLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQ 138 (562)
Q Consensus 59 ~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (562)
..++++ +|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++.+. +..
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~---~~~---------- 114 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFV---PWA---------- 114 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhcc---ccc----------
Confidence 446665 59999999999999999999999999999999 799999999988888888776554 210
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcc-ccc
Q 035554 139 LCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAE-NMG 217 (562)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~-~~~ 217 (562)
..+...+.+.|++.|++.+...+.....+.|++|+++ |+++.++++...++|+.+++.+.+... ...
T Consensus 115 ------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 182 (438)
T TIGR00712 115 ------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN 182 (438)
T ss_pred ------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 1135667788999999999998989999999999888 999999999999999999987776543 346
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 035554 218 YWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 218 ~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+|+..|++.+++.++..++.+
T Consensus 183 ~w~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 183 DWHAALYFPAICAIIVALFAF 203 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 899999988776665544433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-18 Score=181.64 Aligned_cols=367 Identities=12% Similarity=-0.030 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH-HHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF-SII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~-~~~ 114 (562)
..+.+....++...++-...+++|.|++ ++|+|..+.|++.+.+.+...+++++.|.++|| +||++.......+ ..+
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l 82 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAI 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHH
Confidence 3444556666777777778889999986 589999999999999999999999999999999 6985443222111 111
Q ss_pred HHH-HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLL-GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
..+ ....+ .+++.+++.|.+++.+.+...|...++..+. .++ |++.++
T Consensus 83 ~~~~~~~~~-----------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g 131 (382)
T TIGR00902 83 FAAAFSAGA-----------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYG 131 (382)
T ss_pred HHHHHHHhh-----------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCcc
Confidence 111 11122 1477888999999999888888888876553 233 778899
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
......++|.+++|.+++++.+.+||+..|++.....++..+ .....++.+++++++++.....+..
T Consensus 132 ~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------ 198 (382)
T TIGR00902 132 KVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDAIPEDESQGDSAF------------ 198 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCccccccccccchhH------------
Confidence 999999999999999999999999999999877655333332 2222221111000000000000000
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
.+. .+++..+.-...... . ......+....+.|..+ .+.+..
T Consensus 199 -------------------~~~-l~~~~~~~~l~~~~l-~--------------~~~~~~~~~~~~~~l~~-~g~s~~-- 240 (382)
T TIGR00902 199 -------------------IAL-LKNPMNLRFLAAVCL-I--------------QGAHAAYYGFSAIYWQA-AGISAS-- 240 (382)
T ss_pred -------------------HHH-HcChHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHH-CCCCHh--
Confidence 000 000000000000000 0 00011111233444432 222111
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
..+....... +.+.+......|..+ |.++.+.+.++.++.++......+.
T Consensus 241 ----~~g~l~~~~~--------~~~i~~~~~~~~l~~----r~g~~~~l~~~~~~~~~~~~~~~~~-------------- 290 (382)
T TIGR00902 241 ----ATGLLWGIGV--------LAEIIIFAFSNKLFQ----NCSARDLLLISAIACVGRWAIIGAI-------------- 290 (382)
T ss_pred ----HHHHHHHHHH--------HHHHHHHHHhHHHHh----hCCHHHHHHHHHHHHHHHHHHHHhH--------------
Confidence 1122222222 222222233334433 2345666778888888887766554
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSM-SSTAIGTYVCSMILSVVMVLTTKNGKPGWVP 512 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~ 512 (562)
.+.+.+....++.+++++...+....++.+. |++.+++++++++ +..++|..+++.+.|.+.+..
T Consensus 291 ---~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---------- 356 (382)
T TIGR00902 291 ---EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---------- 356 (382)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 4556667778999999999999999999988 9999999999986 577899999999999776521
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHH
Q 035554 513 PNLNDGHLDRFFFLSATVTAMNLGV 537 (562)
Q Consensus 513 ~~l~~~~~~~~f~~~~~~~~~~~~~ 537 (562)
+ ...|++.+++.++++++
T Consensus 357 ------g-~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 ------G-AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred ------c-HHHHHHHHHHHHHHHHH
Confidence 1 24567777777665433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-19 Score=191.08 Aligned_cols=169 Identities=16% Similarity=0.213 Sum_probs=144.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+|+.+..+.+..++..+..+.+...+ .++.+++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 455666677777777666666665544 45678899999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.+. + +.+.++++|++.|++.+...+...+++.|.+|+++ |+++
T Consensus 95 ~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~ 145 (496)
T PRK03893 95 FSVGTLACGFA---P--------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKA 145 (496)
T ss_pred HHHHHHHHHHH---h--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 99888888775 2 37788999999999999999999999999998877 8999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDI 231 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~ 231 (562)
.++++...++|..++|.+.+++.+.++|++.|++..+..+
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~ 185 (496)
T PRK03893 146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII 185 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998999999987555443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-18 Score=184.21 Aligned_cols=383 Identities=15% Similarity=0.099 Sum_probs=252.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+..++...+..+++......-++-++. ++.-|+...+++.....+-..+..+++|.++|| +.|||+++.+.++.++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHH
Confidence 56667777777778777776666665555 455688899999999999999999999999999 7999999999887766
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+.+++..... ..+.+.+++..++.|++.+...|+..+++.|+.|+++ ...+.++
T Consensus 88 ~~~~L~~l~~~~------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al 143 (524)
T PF05977_consen 88 VALLLAVLAFFG------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANAL 143 (524)
T ss_pred HHHHHHHHHHhC------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHH
Confidence 555544432111 1247788888899999999999999999999999888 8899999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.....|+...+||.++|.+....|-.+.|.+++++.++...++...+++.+ ++..+.....+-+...++..+
T Consensus 144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~ryv~----- 215 (524)
T PF05977_consen 144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALREGLRYVR----- 215 (524)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHHHHHh-----
Confidence 999999999999999999988889899999999888776665554433221 111111111211111111100
Q ss_pred CCCCccccchhhhhccCcccccccCchh-HHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFK-FLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
.....+ .+-...++. ++ ...+...++.+..+..+.+..
T Consensus 216 ----------------------~~~~l~~~l~~~~~~~----------------l~-~~a~~aLlPl~a~~~l~~~a~-- 254 (524)
T PF05977_consen 216 ----------------------SSPPLRSVLLRSFLFN----------------LF-ASAVWALLPLFARDVLGGGAS-- 254 (524)
T ss_pred ----------------------cchHHHHHHHHHHHHH----------------Hh-hhHHHHhhhHHHHHHhCCcHH--
Confidence 000000 000000000 00 011122455555544332211
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
..+.+.....+..++ +.+..+..++. .+..+.+..+.++.+++++..++.
T Consensus 255 ----~yGll~a~~gvGai~-----Gal~~~~l~~~-------~~~~~lv~~~~~~~a~~~~~lal~-------------- 304 (524)
T PF05977_consen 255 ----GYGLLLAAFGVGAIL-----GALLLPRLRRR-------LSSRRLVLLASLLFALALLLLALS-------------- 304 (524)
T ss_pred ----HHHHHHHHHHHHHHH-----HHHHHHHhhcc-------cCcchhhHHHHHHHHHHHHHHhcc--------------
Confidence 112222222333333 32222322221 233445666777777776666554
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 434 TSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 434 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+...+..++.|++.........+.+.+.+|+++||++++++.+....+..+|..+.|.+.+..
T Consensus 305 ---~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~----------- 370 (524)
T PF05977_consen 305 ---PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF----------- 370 (524)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 456667778899999999999999999999999999999999999999999999999998776522
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
+....+.+.++..++..++.+..
T Consensus 371 -----g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 371 -----GVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHh
Confidence 22345555555555555554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=188.23 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=134.9
Q ss_pred HHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccc
Q 035554 48 NLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFL 127 (562)
Q Consensus 48 ~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (562)
..........+ .++.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.++ +
T Consensus 8 ~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~---~- 81 (379)
T TIGR00881 8 YLVRKNFALAM-PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFS---T- 81 (379)
T ss_pred HHhHHhhhhhh-HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHh---h-
Confidence 33334444433 46788899999999999999999999999999999999 799999999999999998888776 2
Q ss_pred cCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHh
Q 035554 128 LRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSE 207 (562)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 207 (562)
+.+.+++.|++.|++.+...+...+++.|++|+++ |+++.++.+...++|..++|
T Consensus 82 -------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 82 -------------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred -------------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHH
Confidence 37788999999999999999999999999999888 89999999999999999999
Q ss_pred -hhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 208 -TVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 208 -~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.+++.+.+..+|++.|++.+++.++..++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 137 PLVLFGIAELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 5667777778999999887766555444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-17 Score=175.99 Aligned_cols=163 Identities=16% Similarity=0.222 Sum_probs=135.0
Q ss_pred HHHHHHhhHHHHHHH--HHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhc
Q 035554 47 ANLAFAGVEVNMVLF--AKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 47 ~~~~~~~~~~~~~~y--~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
...+++....+.|.+ +++++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~-- 91 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWV-- 91 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHh--
Confidence 334444444444443 677899999999999999999999999999999999 799999999998888888877665
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
+ +.+.+++.|+++|++.+...+...+++.|.+++++ +++.++..+...++|..
T Consensus 92 -~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 144 (401)
T PRK11043 92 -E--------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPA 144 (401)
T ss_pred -c--------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHH
Confidence 2 37778899999999988888888889999998776 77888888888899999
Q ss_pred HHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 205 FSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
++|.+++++.+..+|+..|++..++.++..+..+.
T Consensus 145 ~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 145 LAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999887766665554443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-18 Score=204.25 Aligned_cols=156 Identities=12% Similarity=0.015 Sum_probs=129.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChh--hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNA--EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~--~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.|.+..+++..++.++...+....+..++.+.++.+.. ..+++.+++.++..++.+++|+++|| +|||++++.+.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHH
Confidence 35777777888888877777777777777777776543 46888999999999999999999999 7999999998877
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++.++..++... .+++.++++|+++|++.+...|+..+++.|++|+++ |+++
T Consensus 87 ~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~ 140 (1146)
T PRK08633 87 EVGLTLLIVLAYYL--------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRA 140 (1146)
T ss_pred HHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhh
Confidence 66666555443211 137889999999999999999999999999999988 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccc
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENM 216 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~ 216 (562)
++++..+.++|.++++.+++++.+.
T Consensus 141 ~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 141 NGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998765
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=185.32 Aligned_cols=180 Identities=11% Similarity=0.108 Sum_probs=159.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
-++.+.++.....+++.--|.+...+ .=.++.+|.+++..|++.+++.+...++.|+.|+|+|| ++||+++.+|..++
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIW 108 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHH
Confidence 34677788888888888888887644 34677899999999999999999999999999999999 69999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.++..+.. ++|++.++|.+.|+|.+.+.|..+++++|.+|+++ |++.+
T Consensus 109 ~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~ 159 (493)
T KOG1330|consen 109 TLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVL 159 (493)
T ss_pred HHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHH
Confidence 99999988862 59999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCcc
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
+++|+++++|..+|..++..+.+..+ ||++|+..+++.++..++.++..++
T Consensus 160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 99999999999999989888887665 9999999998888777766555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=175.06 Aligned_cols=171 Identities=17% Similarity=0.117 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|-+.+.+...+..-.+.....+.+|. +.+++|.|..+.++..+.+.++..++.++.|+++|| +|||+.+..+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i 80 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFII 80 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHH
Confidence 33445555555555666666565655 456799999999999999999999999999999999 7999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++..+ + +.+.++++|+++|++.+...+...+++.|.+|+++ |+++.++
T Consensus 81 ~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 131 (392)
T PRK10473 81 ASLLCSLA---E--------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSL 131 (392)
T ss_pred HHHHHHHh---C--------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 88877665 2 36678889999999999989999999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
.+...++|..++|.+++++.+..+|+..|++.+++.++..++
T Consensus 132 ~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 132 LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887789999998877665555444
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-18 Score=174.78 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=136.5
Q ss_pred HHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccC
Q 035554 50 AFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLR 129 (562)
Q Consensus 50 ~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
+.....+.+|.+.+ ++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++..+.++..++.+++.+. +
T Consensus 6 ~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~---~--- 77 (377)
T PRK11102 6 AIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALA---Q--- 77 (377)
T ss_pred HHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHH---c---
Confidence 33445567777665 689999999999999999999999999999999 799999999999999888887765 2
Q ss_pred CCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 130 PHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++..++.+...++|..++|.+
T Consensus 78 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 78 -----------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999888 9999999999999999999999
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 210 LVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 210 ~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
++++.+..+|++.|++.++..++..+...
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (377)
T PRK11102 135 GGWLLVWFSWHAIFWVLALAAILAAALVF 163 (377)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 99998888999999887776665544433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-18 Score=177.02 Aligned_cols=388 Identities=10% Similarity=0.021 Sum_probs=226.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+|.+....++...++..+.++++.|+++++|.+..+.|++.+.+.++..+++++.|+++|| +||||.+..+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 567888888999999999999999999999999999999999999999999999999999999 7999999987766555
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..........+.. .......+++.+++.+++.+...|....+..|..+ + ++..++.
T Consensus 81 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~ 137 (396)
T TIGR00882 81 LFAPFFIYVFGPLL---------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGK 137 (396)
T ss_pred HHHHHHHHHhhhHH---------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccch
Confidence 44322111000100 00012345566788888888888888777766322 2 3356677
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.....++|..++|.+++.+.+ .+|+..|++.+++.++..++.+...++. |+++..++ ..+. +.
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~--~~ 200 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVAN----------ALGA--NA 200 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhhc----------cccc--cc
Confidence 777889999999999998865 5999999988776666554444332221 11000000 0000 00
Q ss_pred CCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcc
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSN 354 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (562)
.+. .. ++..+....+....+-...... ........++.+.|..+.... ...+
T Consensus 201 ~~~---~~-------~~~~~~l~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~y~~~~~~~-~~~~- 252 (396)
T TIGR00882 201 SAF---SL-------KLALELFRQRKFWMFVLYVVGV----------------ACVYDVFDQQFANFFTSFFAT-PQQG- 252 (396)
T ss_pred CCC---CH-------HHHHHHHcCCcHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhccc-cccc-
Confidence 000 00 0000000000000000000000 000001111334444432210 0000
Q ss_pred cccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 035554 355 FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEET 434 (562)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (562)
....+.......+...+...... ++.+|.++ .+.+.++.++.+++.......
T Consensus 253 -~~~~g~~~~~~~i~~~~~~~~~g----~l~~r~g~--------~~~l~~~~~l~~l~~~~~~~~--------------- 304 (396)
T TIGR00882 253 -TRVFGYVTTMGELLNALIMFCAP----LIINRIGA--------KNALLIAGTIMSVRIIGSSFA--------------- 304 (396)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcc--------chhHHHHHHHHHHHHHHHHhc---------------
Confidence 00011112222222222222222 33445443 224566666666655543332
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 435 SSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIAL-SMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 435 ~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+++.+..++.+++.........++..+..|++.+++..+. +++...+|+.+++.+.|.+.+.
T Consensus 305 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~------------ 370 (396)
T TIGR00882 305 --TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS------------ 370 (396)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh------------
Confidence 3555666778888888877777777888888999998887766 6788999999999988876552
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHH
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGV 537 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~ 537 (562)
.+++..|.+.+++.++..+.
T Consensus 371 ----~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 371 ----IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred ----cccHHHHHHHHHHHHHHHHH
Confidence 13456777777666655444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=179.83 Aligned_cols=392 Identities=13% Similarity=0.107 Sum_probs=229.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHH
Q 035554 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFY 152 (562)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (562)
-+.+.+++.+|+++++.++|+++|| +|||+.++++.++..++.+++.++...+ .+.+++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~--------------------~~e~li 120 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAP--------------------SFEMLI 120 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHH
Confidence 4556788999999999999999999 7999999999998888888877764323 478899
Q ss_pred HHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhh-h-hcccccchhHHHHHHHHHH
Q 035554 153 ISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVL-V-YAENMGYWVLGFWICAGCD 230 (562)
Q Consensus 153 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~-~-~l~~~~~~~~~f~i~~~~~ 230 (562)
++|++.|+..|......+.++.|..|++- ||..-.....+.++|..++..++ . .+.+.-.|++.+....+..
T Consensus 121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999998 99999999999999999996554 2 3444557999998888877
Q ss_pred HHHHHHHHhcC--cceeec-CCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHH
Q 035554 231 ILAFSSLLSGT--LRYRHF-KPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRA 307 (562)
Q Consensus 231 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (562)
++..+++.+.. |++... +.+.++.++ +++..+- .+......+.+.++..++... ..+..++.+..
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~-------sl~~y~G--~~~~~~~~e~~~~e~~~~~~~---~~~~~sl~~~~ 262 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKKGDEEEARK-------ALKFYRG--KEDVEAEIEEMLREIEEEELE---KKKQISLRQLL 262 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHcCCHHHHHH-------HHHHHhC--CCcchhHHHHHHHHHHHhccc---cccCCcHHHHh
Confidence 76666655442 333222 111111111 1121100 000011111100000001000 00111111111
Q ss_pred HhhhcccccccCCCCCccceeehhhhhhh---------hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHH
Q 035554 308 AIMTSADITTNEDQNPNQWRLCTVTQVEE---------MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYD 378 (562)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (562)
++...+.+..+..+....| ..+....+..+.+.. .....+.....++....++...+
T Consensus 263 ----------~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~--~a~~an~~~g~v~~~~t~~~~~l-- 328 (485)
T KOG0569|consen 263 ----------KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE--EAQYANLGIGIVNLLSTLVSPFL-- 328 (485)
T ss_pred ----------cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0000001111111100111 111111110111100 00000112222333333333333
Q ss_pred HHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhh-h
Q 035554 379 KLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFV-Y 457 (562)
Q Consensus 379 ~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~-~ 457 (562)
.+|.+| || .+..+..++.++.+.+........+. .+.-.+..+.+.+++.++.++. .
T Consensus 329 ------id~~gR-Rp-------Lll~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~y~~i~~~~~~~~~f~~G~g 386 (485)
T KOG0569|consen 329 ------IDRLGR-RP-------LLLISLSLMAVALLLMSIALFLSNSF--------GSWLSYLCIAAIFLFIISFAIGPG 386 (485)
T ss_pred ------HHhcCC-cH-------HHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHhhhcCCC
Confidence 336654 42 34444444444444443333221110 0011122345566666666654 5
Q ss_pred hhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 035554 458 VAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGV 537 (562)
Q Consensus 458 ~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~ 537 (562)
|..+-+..|++|++.|+.++++..+.+.+.+++.......+..... .++|+++.+.+++..+.
T Consensus 387 pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~i~~~~~~i~ 449 (485)
T KOG0569|consen 387 PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFVIPLAIFLIY 449 (485)
T ss_pred chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999888887776655321 25788999999999999
Q ss_pred HHHHhhcccccchhhhhhc
Q 035554 538 FVVCARRYKSISLQKQEGE 556 (562)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~ 556 (562)
.++..||+|+|+.++..++
T Consensus 450 ~~~~lPETkgr~~~eI~~~ 468 (485)
T KOG0569|consen 450 LYRYLPETKGRTPYEIIEE 468 (485)
T ss_pred HHHhCcccCCCCHHHHHHH
Confidence 9999999999987665444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-17 Score=175.53 Aligned_cols=155 Identities=15% Similarity=0.055 Sum_probs=126.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.+...+..+.++.+...+........+|.+ ++++|.|+.+.+++.+.+.++..++.++.|+++|| +||||++..+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~ 99 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHH
Confidence 3344566777777777777777776666664 88999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+++++.+++......+ +++.++++|+++|+|.|...+..++++.|..++++ |..
T Consensus 100 ~~~~~~~l~~~~~~a~--------------------~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~ 153 (438)
T PRK10133 100 LYALGAALFWPAAEIM--------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_pred HHHHHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHH
Confidence 9999997764221112 47889999999999999999999999998755544 555
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l 213 (562)
..++.+....+|..++|.+++.+
T Consensus 154 ~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 154 RLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888889999998877654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-18 Score=202.29 Aligned_cols=339 Identities=13% Similarity=0.068 Sum_probs=194.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchH
Q 035554 71 AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA--FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAET 148 (562)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (562)
...++..+++.+...++.+++|+++|| +|||+++..... +...+..+.++.. + ++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~--~--------------------s~ 108 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL--N--------------------SV 108 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH--h--------------------hH
Confidence 347778888999999999999999999 799998644222 2222222222220 1 47
Q ss_pred HHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHH
Q 035554 149 AIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAG 228 (562)
Q Consensus 149 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~ 228 (562)
+.++++|+++|++.++..|+..+++.|++++++ |+++.++.+.+.++|.++||.++|++.+..+|++.|+..++
T Consensus 109 ~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~ 182 (1140)
T PRK06814 109 PLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMG 182 (1140)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 889999999999999999999999999999988 99999999999999999999999999998999999855555
Q ss_pred HHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHH
Q 035554 229 CDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAA 308 (562)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (562)
+.++++++.+...+..+ .++.........+.....++. ...+...+.....
T Consensus 183 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~ 233 (1140)
T PRK06814 183 IAVLGWLASLFIPKTGN-AAPDLKIDRNIIRSTITLLKY----------------------------AKADKRIWLAILG 233 (1140)
T ss_pred HHHHHHHHHhhCCCCCC-CCCCCeeccchHHHHHHHHHH----------------------------HhcCchHHHHHHH
Confidence 44444444333322111 111000000000000000000 0000000000000
Q ss_pred hhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhh
Q 035554 309 IMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKV 388 (562)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~ 388 (562)
.. +.......+..+.+.|..+..+.+.. ..+.+.....+..++...+..++ .++.
T Consensus 234 ~~---------------~~~~~~~~~~~~~p~~~~~~~g~~~~------~~g~~~~~~~~g~~ig~~~~g~l----~~~~ 288 (1140)
T PRK06814 234 IS---------------WFWLVGAVVLSQLPLLAKETLGGDEN------VATLFLAVFSVGVAVGSFLASKL----SEGR 288 (1140)
T ss_pred HH---------------HHHHHHHHHHHHhHHHHHHHcCCchH------HHHHHHHHHHHHHHHHHHHHHHH----hCCc
Confidence 00 00000011112445555543222211 12233333333444433333322 2222
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccCC--CCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 035554 389 AKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQR-RLKYASFGG--EETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFA 465 (562)
Q Consensus 389 ~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~ 465 (562)
.. ...+..+.++.+++.+...+.... ......... .-....+.|.+++..+++|++.++..++..+++.
T Consensus 289 ~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 360 (1140)
T PRK06814 289 IT--------LLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQ 360 (1140)
T ss_pred ee--------eeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 112333434433333322221000 000000000 0000134566677888999999999999999999
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 035554 466 SQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 466 ~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~ 500 (562)
+.+|++++|+++|++++...+|..+++.+.+.+..
T Consensus 361 ~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 361 AWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred hhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887653
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-17 Score=174.38 Aligned_cols=385 Identities=13% Similarity=0.126 Sum_probs=229.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-----cchHH-HHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-----GRYLT-CVT 107 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grk~~-i~~ 107 (562)
+|+.+.++...+......+.....+|.|+++ .|.|..+.+... ..... +++.++.|.++|| + ||||. +..
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWLLA 86 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHc-ccccCCCCchHHHHH
Confidence 4556677777777778888888888898775 589998988862 22232 3688999999999 7 99986 557
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKS 187 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 187 (562)
+.++.+++...+++.. | ..+.+.+.+.+++.+++.+...+...++..|++|+++
T Consensus 87 ~~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------ 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------ 140 (491)
T ss_pred HHHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------
Confidence 7767767766665541 1 1247778888999999999999999999999999888
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhhhhccc-ccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHh
Q 035554 188 KTSFYSYFYIALNLGCLFSETVLVYAEN-MGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLR 266 (562)
Q Consensus 188 r~~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (562)
|+++.++...+.++|..+++.+++++.+ ..||+..|++.++..++..+..+.. ++.++.+++++..++ .....++
T Consensus 141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~~~~~~---~~~~~l~ 216 (491)
T PRK11010 141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVPKTLEQ---AVVAPLR 216 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccchhh---hHHHHHH
Confidence 9999999999999999999999999888 5699999998887666555444332 221111000000000 0000000
Q ss_pred hhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhh
Q 035554 267 KINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGA 346 (562)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (562)
+ . .+++..+.-........ .. ......+.+.|+.+..
T Consensus 217 ~---------------------------~-~~~~~~~~~ll~~~l~~--------------~~-~~~~~~~~~~~l~~~~ 253 (491)
T PRK11010 217 D---------------------------F-FGRNNAWLILLLIVLYK--------------LG-DAFAMSLTTTFLIRGV 253 (491)
T ss_pred H---------------------------H-HcCcCHHHHHHHHHHHH--------------HH-HHHHHHHHHHHHHHhc
Confidence 0 0 00000010000000000 00 0000112333433322
Q ss_pred hccCCCcccccCccccc-cchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 347 AMNTGVSNFQIPPASMT-AFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLK 425 (562)
Q Consensus 347 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~ 425 (562)
+.+.. ..+... ....+..++...+.+ .+.+|+++ .+.+..+.++.+++.+.+.....
T Consensus 254 G~s~~------~~g~~~~~~g~i~~iiG~ll~G----~L~dr~g~--------~~~l~i~~~l~~l~~l~~~~l~~---- 311 (491)
T PRK11010 254 GFDAG------EVGLVNKTLGLLATIVGALYGG----ILMQRLSL--------FRALMIFGILQGVSNAGYWLLSI---- 311 (491)
T ss_pred CCCHH------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHh----
Confidence 22211 111111 111122223333333 33445443 11233333433333332221100
Q ss_pred hhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q 035554 426 YASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKN 505 (562)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~ 505 (562)
...+.+.+....++..+..++..+..+++..+.+|++.+++..|+.+...++|..+++.+.|.+.+..
T Consensus 312 ---------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~--- 379 (491)
T PRK11010 312 ---------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH--- 379 (491)
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 01233334445566555666666777899999999999999999999999999998888888766521
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035554 506 GKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCA 542 (562)
Q Consensus 506 ~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 542 (562)
++...|.+.+++++.+++..+.+.
T Consensus 380 -------------G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 380 -------------GWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred -------------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888777776654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=178.97 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+...+..++.....+...+.+|.++++++|+|..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i 79 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAI 79 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 356677777778888888888888888999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.++ + .+.+.++++|+++|++.+. .+...+++.|++|+++ |+++.++
T Consensus 80 ~~~~~~~~---~-------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~ 130 (366)
T TIGR00886 80 PCLWAGLA---V-------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGL 130 (366)
T ss_pred HHHHHHHH---h-------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHH
Confidence 98888776 2 0377788999999999665 4567889999999888 8999999
Q ss_pred HHHHHhHHHHHHhhhhhhccc----------ccchhHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAEN----------MGYWVLGFWI 225 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~----------~~~~~~~f~i 225 (562)
+....++|..+++.+++.+.+ ..+|++.|++
T Consensus 131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 988888888888777766543 2379999843
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-17 Score=172.04 Aligned_cols=180 Identities=18% Similarity=-0.006 Sum_probs=133.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+++..+..+......+...+..+...+.++|+|..|.+++.+++.+++.++.++.|++.|| +|.|+++.++.++..+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i 112 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence 666666666555545555454444443444899999999999999999999999999999999 7999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+++.++.+. ...+++.+++.|++.|++ +...+.....+.+++|+++ |+++.++
T Consensus 113 ~~~~~~~a~~~------------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi 167 (462)
T PRK15034 113 PCVWLGIAVQN------------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGI 167 (462)
T ss_pred HHHHHHHHHcc------------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHH
Confidence 88887764110 012488899999999998 6688889999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcc-----c-------------ccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 195 FYIALNLGCLFSETVLVYAE-----N-------------MGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~-----~-------------~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+....|+|..+++++.+.+. . ..+|+.++++..+..++..++.++.
T Consensus 168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87777788776665554322 1 2346666666555555554444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-16 Score=168.17 Aligned_cols=394 Identities=10% Similarity=0.056 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGR-YLTCVTFQAFSIIGL 116 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-k~~i~~~~~~~~~~~ 116 (562)
..+-+..++.+.++-...+.++.|+++++|++..+.|++.+.+.++..+++++.|+++|| +|| |+++.++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHH
Confidence 345566667777777778999999999999999999999999999999999999999999 665 778888877777776
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCC--C-chhhhhhhhhHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEE--D-PKEKKSKTSFYS 193 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~--~-~~~~~~r~~~~~ 193 (562)
.+..+. + +++.+++.+++.+++.+...|...++..+...+. + .+.. +|.+.++
T Consensus 84 ~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~-~~~r~~G 139 (418)
T TIGR00889 84 FFAAQV---T--------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF-PPIRVMG 139 (418)
T ss_pred HHHHHh---c--------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC-CCeeeeh
Confidence 666554 1 3666778888888887777776665543222100 0 0000 0444443
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCC-CchhHHHHH-HHHHHhhhccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSG-NPLSRFSQV-IVASLRKINLE 271 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~ 271 (562)
.+|.+++|.+++.+.....|. +|++.++..++..+..+. .++.+++++++ ...++.... ....+|+
T Consensus 140 ------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~k~---- 207 (418)
T TIGR00889 140 ------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKMSIKVMLGLDAFILFKN---- 207 (418)
T ss_pred ------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccccCHHHHhhhhHHHHhcC----
Confidence 478888888888874332343 465555544444433322 22211110000 000000000 0000000
Q ss_pred CCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCC
Q 035554 272 MPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTG 351 (562)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (562)
.....+-....... ..........+.+..+. +.+..
T Consensus 208 ---------------------------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~-g~~~~ 243 (418)
T TIGR00889 208 ---------------------------KRMAIFFFFSMLLG----------------APLQITNIFGNGFLHEF-GRNPE 243 (418)
T ss_pred ---------------------------CCeeeHHHHHHHHH----------------hHHHHHHHhHHHHHHHh-ccccc
Confidence 00000000000000 00000001122222221 10100
Q ss_pred Cc-ccc-cCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035554 352 VS-NFQ-IPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASF 429 (562)
Q Consensus 352 ~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~ 429 (562)
.. .+. ...+....+..+..++...+.+ .+.+|+++ .+.+..+.++.+++........
T Consensus 244 ~~~~~~~~~~g~~~~~~~i~~i~~~~~~g----~l~dr~g~--------r~~l~~~~~~~~v~~~l~~~~~--------- 302 (418)
T TIGR00889 244 FADSFVVKNASIWMSLSQFSEIFFILTIP----FFLKRFGI--------KKVMLLSLVAWALRFGFFAYGD--------- 302 (418)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHhCc--------HHHHHHHHHHHHHHHHHHHHcC---------
Confidence 00 000 0112222222222323333333 33445432 3356666666666655544320
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhcCCCC
Q 035554 430 GGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSM-SSTAIGTYVCSMILSVVMVLTTKNGKP 508 (562)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~i~~~~~~~~~~ 508 (562)
....+.+.+.+..++.+++++...+....++.+..|++.||+++|+.+ ...++|..+|+.+.|.+.+.....+
T Consensus 303 ----~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~-- 376 (418)
T TIGR00889 303 ----PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG-- 376 (418)
T ss_pred ----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc--
Confidence 001123345567889999999999999999999999999999999997 6789999999999997766431100
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 509 GWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 509 ~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
..+++..|.+.+++.+++.+.++++.++.++
T Consensus 377 --------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 377 --------TFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 0135678888888888888777777765433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-17 Score=169.78 Aligned_cols=338 Identities=10% Similarity=0.023 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch----HHHHHHHHHHHHHHHH
Q 035554 43 NQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY----LTCVTFQAFSIIGLLG 118 (562)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk----~~i~~~~~~~~~~~~~ 118 (562)
..++..+++..+.+++|.|+++ +|.|..+.|++.+.+.+...++.++.|.++|| +||+ +.+.++..+. ...
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~---~~~ 86 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF---AVA 86 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH---HHH
Confidence 3555667777888899999965 79999999999999999999999999999999 7984 3332222221 111
Q ss_pred HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
.... ..+.+.+++.|++.+++.+...|...++..++ .++ |++.++..+..
T Consensus 87 ~~~~----------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~ 136 (382)
T PRK11128 87 FWFG----------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLW 136 (382)
T ss_pred HHHh----------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHH
Confidence 1111 12477888899999999998999888887775 233 66778888888
Q ss_pred HhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCC
Q 035554 199 LNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGG 278 (562)
Q Consensus 199 ~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (562)
.++|.+++|.+++++.+.+||+..|++.++..++..+... ..++. +|++++.+. . +. ....
T Consensus 137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~----------~-~~----~~~~ 197 (382)
T PRK11128 137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQQ----------E-SA----GWPA 197 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCccccccc----------c-cc----ccch
Confidence 8999999999999999989999999877765544433322 22211 111110000 0 00 0000
Q ss_pred ccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccC
Q 035554 279 LFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIP 358 (562)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (562)
. .+. .+++..+.-....... ...........+.|..+ .+.+. ..
T Consensus 198 ~-------------~~i-~~~~~~~~~~~~~~l~---------------~~~~~~~~~~~~~~~~~-~g~s~------~~ 241 (382)
T PRK11128 198 W-------------KAL-LKEPTVWRFLLCVSLL---------------QGSHAAYYGFSAIYWQA-AGYSA------ST 241 (382)
T ss_pred H-------------HHH-HcChhHHHHHHHHHHH---------------HHHhHhHHHHHHHHHHH-CCCCH------hH
Confidence 0 000 0000000000000000 00000111123334332 11111 11
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccch
Q 035554 359 PASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLS 438 (562)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (562)
.+.+...+.+..++...+.+ .+.+|+ +..+.+..+.++.+++.+..... .+
T Consensus 242 ~g~~~~~~~~~~~~~~~~~g----~l~~r~--------~~~~~l~~~~~~~~~~~~~~~~~-----------------~~ 292 (382)
T PRK11128 242 IGYLWSLGVVAEVLIFAFSN----RLFRRW--------SARDLLLLSAICGVVRWGLMGST-----------------TA 292 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHC--------CHHHHHHHHHHHHHHHHHHHHhh-----------------hh
Confidence 12222222222222222222 222332 24445666777777766555443 35
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhHh
Q 035554 439 IFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSM-SSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 439 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~-~~~~lg~~lg~~l~~~i~~ 500 (562)
.+.+++..++.|++++...+....+..+. |++.+++.+++++ ....+|..+|+.+.|.+.+
T Consensus 293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 293 LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788999999999999988888887 5566789999886 6667888999999887765
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-17 Score=173.27 Aligned_cols=354 Identities=13% Similarity=0.088 Sum_probs=208.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHHHHHHHHHHH
Q 035554 44 QGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYL-TCVTFQAFSIIGLLGL 119 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~-~i~~~~~~~~~~~~~~ 119 (562)
.+..++.+..+.++++.|+++++|+++.++|++.+...+...+..|+.|+++||. +|||| .++.+....+++.+++
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 4456667777888899999999999999999999999999999999999999973 57755 5667777777777776
Q ss_pred HhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhhhHHHHHHH
Q 035554 120 SFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~ 198 (562)
... |+. ........+++.+++.+++.+...++..++..|..++ ++ |++..++.+.+
T Consensus 88 ~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~ 144 (437)
T TIGR00792 88 FTT---PDF--------------SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFG 144 (437)
T ss_pred HhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHH
Confidence 554 320 0012355667777888888888888888888888753 34 78889998888
Q ss_pred HhHHHHHHhhhhhhcc-------cccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCC-CchhHHHHHHHHHHhhhcc
Q 035554 199 LNLGCLFSETVLVYAE-------NMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSG-NPLSRFSQVIVASLRKINL 270 (562)
Q Consensus 199 ~~lg~~~~~~~~~~l~-------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 270 (562)
.++|..+++.+.+.+. +..+|+..+.+.+++.++..++.+...++.+.+++.+ ++.....+..+...++
T Consensus 145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~--- 221 (437)
T TIGR00792 145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKN--- 221 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCC---
Confidence 8888877766554433 2458999888777766555544333332211110110 0000000000000000
Q ss_pred cCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccC
Q 035554 271 EMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNT 350 (562)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (562)
.....+-...... . ..........+.|.....+ +
T Consensus 222 ----------------------------~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~-~- 255 (437)
T TIGR00792 222 ----------------------------DQLLILCLAYLFY-N---------------LAFNIKNGVQVYYFTYVLG-D- 255 (437)
T ss_pred ----------------------------HHHHHHHHHHHHH-H---------------HHHHHHcchhheeEeeecC-C-
Confidence 0000000000000 0 0000000000111110000 0
Q ss_pred CCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 035554 351 GVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFG 430 (562)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~ 430 (562)
....+.+.....+..++..++.. ++.+|+++ .+.+..+.++.+++.....+.
T Consensus 256 -----~~~~~~~~~~~~i~~ii~~~~~~----~l~~r~g~--------~~~~~~~~~~~~~~~~~~~~~----------- 307 (437)
T TIGR00792 256 -----PELFSYMGSIAIVAGLIGVLLFP----RLVKKFGR--------KILFAGGILLMVLGYLIFFFA----------- 307 (437)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCc--------HHHHHHHHHHHHHHHHHHHHc-----------
Confidence 00011111222233333333333 33344432 234556666666665554332
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 035554 431 GEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIP-------NGLKSLGIALSMSSTAIGTYVCSMILSVVMVLT 502 (562)
Q Consensus 431 ~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~ 502 (562)
..+.+...+..++.+++.+...+..+++..+.+| ++.+|.++|++++...+|..+++.+.+.+.+..
T Consensus 308 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 308 -----GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1233445567788889999889888999888876 567899999999999999999999999876643
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-16 Score=163.51 Aligned_cols=166 Identities=13% Similarity=0.037 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-----cchH-HHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-----GRYL-TCVTFQAFSII 114 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grk~-~i~~~~~~~~~ 114 (562)
+...+.....+.-...-+|.|+++ .|+|.++.|++...... .+..++.|+++|| + |||| .+.++.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHH
Confidence 344555666666777889999986 49999999998776655 6889999999999 7 8876 67777777877
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..++.+. +. ..+.+.+++..++.++..+...|+..+++.|++|+++ |+++.++
T Consensus 81 ~~~~l~~~---~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~ 134 (402)
T PRK11902 81 SIAAMAFC---PP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAV 134 (402)
T ss_pred HHHHHHhc---Cc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHH
Confidence 77766654 11 1246666666667788888899999999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENM-GYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f~i~~~~~~~~~~~ 236 (562)
...+.++|..+++.+++++.+. .||+..|++.++..++..+.
T Consensus 135 ~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 135 KVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888875 59999999877766554443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-17 Score=161.71 Aligned_cols=392 Identities=14% Similarity=0.009 Sum_probs=246.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.++|.+++..... ...++.+.+...+.+++++++|+|+.|.+++..+-.+...+..++-|.+.|| +|.|++..++.+
T Consensus 10 ~~~~~~L~~S~~af-~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLAF-DVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHH
Confidence 34456666655544 3445555566677788889999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..+-.+...++.+.|+ .+.+++..++.|++.+. +....+.++.+||+++ .|.
T Consensus 88 l~~IP~~~~~~a~~~~~--------------------~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~ 140 (417)
T COG2223 88 LLLIPCLGLAFAVTYPS--------------------TWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGL 140 (417)
T ss_pred HHHHHHHHHHHHccCCc--------------------hHHHHHHHHHHhcccce-ehcccccccccCChhh------hhH
Confidence 99998888888854333 57899999999998555 5677888999999988 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccc---hhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhh
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGY---WVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRK 267 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (562)
+.+++. ..|+|..+..++++++....+ |+....+..+..++..++.++..++.+..++..++... ..++...+
T Consensus 141 AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--~~~~~v~~- 216 (417)
T COG2223 141 ALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--AQLKAVFS- 216 (417)
T ss_pred HHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch--hHHHHHhc-
Confidence 999999 999999999999999988888 89888888888877777666655443332222211110 00000000
Q ss_pred hcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhh
Q 035554 268 INLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAA 347 (562)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 347 (562)
++..|+-.. .+... ...+.....+++.|+.....
T Consensus 217 -------------------------------~~~~W~lsl--lY~~t-------------FG~Fvgfs~~l~~~~~~~fg 250 (417)
T COG2223 217 -------------------------------NKDTWLLSL--LYFAT-------------FGGFVGFSAYLPMYLVTQFG 250 (417)
T ss_pred -------------------------------CcchHHHHH--HHHHH-------------HHHHHHHHHHHHHHHHHhcC
Confidence 111111000 00000 00000011145555553333
Q ss_pred ccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035554 348 MNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYA 427 (562)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~ 427 (562)
.+.. ..+.+....++...+.-|+-+ +..+ |.+..+...+.+..++++.....+..+.
T Consensus 251 ~~~~------~Ag~~a~~f~~~g~l~Rp~GG--------~LsD----R~Gg~rv~~~~f~~~~~~~~~l~~~~~~----- 307 (417)
T COG2223 251 LSPV------TAGLIAFLFPLIGALARPLGG--------WLSD----RIGGRRVTLAVFVGMALAAALLSLFLTG----- 307 (417)
T ss_pred CChh------hHHHHHHHHHHHHHHHHhccc--------hhhh----hccchhHHHHHHHHHHHHHHHHHccccc-----
Confidence 2211 122333333333444444444 3333 2334456666677777776666554211
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 035554 428 SFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGK 507 (562)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~ 507 (562)
++ ...+.+......+...+..++-+...+-++....|+ +.|.+.|+.....++|++.-|...+...+.+
T Consensus 308 --~~---~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t----- 376 (417)
T COG2223 308 --FG---HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT----- 376 (417)
T ss_pred --cc---cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc-----
Confidence 00 012222333333333344444444444555555543 6889999999999999988888877665533
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 035554 508 PGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRY 545 (562)
Q Consensus 508 ~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 545 (562)
+.+...|+++..+.+++.+..+..+.+.
T Consensus 377 ----------g~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 377 ----------GSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2335678888888888888777766553
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-17 Score=168.94 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=117.9
Q ss_pred HHHHHhhHHHHHHHHHHhhC--CChhhhhhHHHH-----HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 035554 48 NLAFAGVEVNMVLFAKSVLR--QTNAEASNTFSR-----WMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLS 120 (562)
Q Consensus 48 ~~~~~~~~~~~~~y~~~~lg--~s~~~~~~~~~~-----~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~ 120 (562)
.+..+.+. .+..++.++.. .++.+.+.+.+. ..++..++.++.|+++|| +||||++..+.++..++.+++.
T Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 6 WFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHh
Confidence 33344443 34455555543 344555544433 233334688999999999 7999999999999999988887
Q ss_pred hhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHh
Q 035554 121 FATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALN 200 (562)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 200 (562)
++.+.+. ........++++|+++|++.+...+...+++.|.+|+++ |++..++.+.+..
T Consensus 84 ~~~~~~~---------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~ 142 (394)
T TIGR00883 84 LLPSYAT---------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAP 142 (394)
T ss_pred hCCChhh---------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHH
Confidence 7621110 000012357889999999999999999999999999888 8999999999999
Q ss_pred HHHHHHhhhhhhcc--------cccchhHHHHHHHHHHHHHHH
Q 035554 201 LGCLFSETVLVYAE--------NMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 201 lg~~~~~~~~~~l~--------~~~~~~~~f~i~~~~~~~~~~ 235 (562)
+|..+++.++..+. +..+|++.|++.+++.+++..
T Consensus 143 ~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 143 VGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 99999988766543 346899999887766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=172.79 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=125.6
Q ss_pred HhhHHHHHHHHHHhh-----CCCh--hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhc
Q 035554 52 AGVEVNMVLFAKSVL-----RQTN--AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 52 ~~~~~~~~~y~~~~l-----g~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
.+....+..++++.. ..+. .+.+++.+...++..++.+++|+++|+ +|||++++++.+++.+|.++++++
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a-- 139 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALA-- 139 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHh--
Confidence 355555555555422 1111 345899999999999999999999999 799999999999999999999987
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
+ +...++++|++.|+|.|......+.+++|..|++. |+...+.+++..++|..
T Consensus 140 -~--------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 140 -P--------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGIL 192 (513)
T ss_pred -h--------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHH
Confidence 2 38889999999999999999999999999999888 99999999999999999
Q ss_pred HHhhhhhhcccc--cchhHHHHHHHHHHHHHHHHH
Q 035554 205 FSETVLVYAENM--GYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 205 ~~~~~~~~l~~~--~~~~~~f~i~~~~~~~~~~~~ 237 (562)
++. +.++..+. .+||..+.+..+..++..+.+
T Consensus 193 ~~~-~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~ 226 (513)
T KOG0254|consen 193 LGY-CINYGTSKVYAGWRIPLGLALIPAVILALGM 226 (513)
T ss_pred HHH-HHhhhhccCCccHHHHHHHHHHHHHHHHHHH
Confidence 885 44444433 489988887776665555543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-16 Score=161.40 Aligned_cols=173 Identities=12% Similarity=0.026 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
.++.+....+...+.+....+.+ ..+++++|.|..+.|++.+.+.++..++.+++|++.|| +|||+++.+++++++++
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHH
Confidence 34455555555555554444444 55688999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+++..++. ..+++.++++|++.|+|.|...+..++++.+..|+++ |++..++.
T Consensus 82 ~~l~~~~~~--------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~ 135 (410)
T TIGR00885 82 AFLFWPAAE--------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLA 135 (410)
T ss_pred HHHHHHHHh--------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHH
Confidence 877654421 1247788999999999999999999999999888777 77888999
Q ss_pred HHHHhHHHHHHhhhhhhcccc--------------------------cchhHHHHHHHHHHHHHHHH
Q 035554 196 YIALNLGCLFSETVLVYAENM--------------------------GYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~--------------------------~~~~~~f~i~~~~~~~~~~~ 236 (562)
+...++|..++|.+++.+... .+|+++|++.++..++..++
T Consensus 136 ~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 136 QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776321 36999998777655544333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-16 Score=160.53 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=117.2
Q ss_pred HHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc----ccchHHH-HHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 57 NMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY----LGRYLTC-VTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 57 ~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grk~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
.+|.+ .+++|+|.++.|+.... .+...+ .++.|.++||+ +||||.+ +.+.++.++..+.+.+. +.
T Consensus 10 ~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~~---- 79 (356)
T TIGR00901 10 TLPYW-LRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---VP---- 79 (356)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---Cc----
Confidence 34444 55789999999988655 344444 88999999994 2899975 56666666666565554 11
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
..+.+.+....++.+++.+...++..+++.|++|+++ |+++.++...+.++|.++++.+++
T Consensus 80 -------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~ 140 (356)
T TIGR00901 80 -------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLAL 140 (356)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHH
Confidence 1235566666667788888889999999999998888 999999999999999999999999
Q ss_pred hcccccc--------hhHHHHHHHHHHHHHHHHHH
Q 035554 212 YAENMGY--------WVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 212 ~l~~~~~--------~~~~f~i~~~~~~~~~~~~~ 238 (562)
++.+..+ |+..|++.+++.+++.+..+
T Consensus 141 ~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 141 VLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 8887777 99999988887766555444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-16 Score=162.39 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 035554 54 VEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133 (562)
Q Consensus 54 ~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (562)
..+.+| .+.+++|+|..+.+++.+.+.++..++.++.|+++|| +||||++.++.++..++.+.+ .. +
T Consensus 19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~---~------- 85 (355)
T TIGR00896 19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA---P------- 85 (355)
T ss_pred CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh---c-------
Confidence 344444 4677899999999999999999999999999999999 799999999988877777655 33 2
Q ss_pred CCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhc
Q 035554 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 213 (562)
+.+.+++.|++.|++.+...+..+....|.++ ++ |+++.++++...++|..+++.+++.+
T Consensus 86 -------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 86 -------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999998888888888888875 45 88999999999999999999998888
Q ss_pred cccc--chhHHHHHHHHHHHH
Q 035554 214 ENMG--YWVLGFWICAGCDIL 232 (562)
Q Consensus 214 ~~~~--~~~~~f~i~~~~~~~ 232 (562)
.+.. +|+..|.+.++..++
T Consensus 146 ~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 146 AQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHhhhhhHHHHHHHHHHHHHH
Confidence 7654 388888766554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-16 Score=158.58 Aligned_cols=155 Identities=14% Similarity=-0.013 Sum_probs=133.9
Q ss_pred hHHHHHHHHHHhhCCChhh-hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 035554 54 VEVNMVLFAKSVLRQTNAE-ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHG 132 (562)
Q Consensus 54 ~~~~~~~y~~~~lg~s~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (562)
..++...|+.+++|+++.+ .|.+.+++..++.++.+++|+++|| +|.|+++.++.+.+.+..+++.+++
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~--------- 113 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT--------- 113 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3445667899999999999 9999999999999999999999999 7999999999999999999998873
Q ss_pred CCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhh
Q 035554 133 CGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVY 212 (562)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~ 212 (562)
+...+.+.|++.|++.|... +...++..++|+++ |+++.++.+.+.++|.++++.++++
T Consensus 114 --------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 114 --------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37779999999999999999 99999999999888 9999999999999999999999999
Q ss_pred cccccchhHHH---HHHHHHHHHHHHHHHhc
Q 035554 213 AENMGYWVLGF---WICAGCDILAFSSLLSG 240 (562)
Q Consensus 213 l~~~~~~~~~f---~i~~~~~~~~~~~~~~~ 240 (562)
+. .+||+.-+ ++......+++++.+++
T Consensus 173 l~-s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 173 LV-TLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HH-hcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 54 57887644 45555555555554443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-15 Score=159.43 Aligned_cols=436 Identities=14% Similarity=0.066 Sum_probs=243.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh---cccchHHHHHH-HH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDS---YLGRYLTCVTF-QA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr---~~Grk~~i~~~-~~ 110 (562)
++++.+....+...+++-...++++.|+ +++|.+....+.+..+..+...+.+|+.|+++|| .+||||.++.+ ..
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~ 82 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence 4566666777777888888888888886 4699999999999999999999999999999993 27999998875 55
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC-CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS-PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 189 (562)
..+++.+++.++.....+. .++ .+..+ ....+.++++..+..++.....++..++++|.+|+++++ ++
T Consensus 83 ~~~~~l~ll~~~~~~~~~~---~~~----~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~ 151 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLF---GDN----LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TR 151 (477)
T ss_pred HHHHHHHHHHhCchhhhhc---ccc----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HH
Confidence 5666666666652211000 000 00000 011234455555666788888888999999999987611 35
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhhc--ccc-------------cchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCch
Q 035554 190 SFYSYFYIALNLGCLFSETVLVYA--ENM-------------GYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPL 254 (562)
Q Consensus 190 ~~~~~~~~~~~lg~~~~~~~~~~l--~~~-------------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (562)
.+.++.+...++|..+++.++++. .+. .+.+..|++.+++.+++.++..+..++.+..++++...
T Consensus 152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~ 231 (477)
T TIGR01301 152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN 231 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh
Confidence 799999999999999999888764 111 15688999988877776665444333322111100000
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhh-
Q 035554 255 SRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQ- 333 (562)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 333 (562)
. .++.. .+.+ .....++.. +..... .+..+.++.+..
T Consensus 232 ~-----------------------~~~~~----~~~~-~~~~~~~i~----~~~~~m----------P~~m~~l~~vqff 269 (477)
T TIGR01301 232 S-----------------------EAAPP----SKHG-EEAFFGELF----GAFKYL----------PRPVWILLLVTCL 269 (477)
T ss_pred h-----------------------hcccc----cccc-hhhhHHHHH----HHHHHC----------CHHHHHHHHHHHH
Confidence 0 00000 0000 000000000 000000 000111121110
Q ss_pred -------hhhhhhHHHHHh-hhccCCCcccccCcc-ccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHH
Q 035554 334 -------VEEMLSLFVEQG-AAMNTGVSNFQIPPA-SMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGI 404 (562)
Q Consensus 334 -------~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~ 404 (562)
+..+.+.++.+. .+-+... ...-..+ -..........+...+.+.++-++.++.++|| ..-..
T Consensus 270 sW~a~f~~~~y~T~~vg~~v~~~~~~~-~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k-------~~~~~ 341 (477)
T TIGR01301 270 NWIAWFPFILFDTDWMGREVYGGSVNQ-GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK-------RLWGI 341 (477)
T ss_pred HHHHHHHHHHhccHHHHHHHcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------hHHHH
Confidence 011122222221 0100000 0000000 00111111111221233333334445544211 12256
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCC-CC--Cccch-hHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCc--hhHHHHHH
Q 035554 405 GLAIATVAMIIAGIVEQRRLKYASFGG-EE--TSSLS-IFWQTPQYVLLGVSEAFVYVAQMEFFASQIPN--GLKSLGIA 478 (562)
Q Consensus 405 g~ll~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~-~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~rg~~~g 478 (562)
+.++.++|+....+......+..+..+ +. ..+.. .+..+..+.+.|+..+..+...++++.+..|+ +..|.++|
T Consensus 342 s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mg 421 (477)
T TIGR01301 342 VNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMG 421 (477)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhh
Confidence 777777787777665321110000000 00 00111 35667788999999999999999999999995 45699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 035554 479 LSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYK 546 (562)
Q Consensus 479 l~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 546 (562)
+.|++..+.+.+.....|.+.+...+ +-...+.+-++.++++.+..++..|+.+
T Consensus 422 ilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 422 VLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999888875553321 1123667777777788888777777644
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-15 Score=150.61 Aligned_cols=384 Identities=14% Similarity=0.100 Sum_probs=234.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|....+..+.|+...........+.+.+++.++++..+++.+..++..++.+++++.|++.+| +|+|+.++.|+.++++
T Consensus 12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~av 90 (422)
T COG0738 12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAV 90 (422)
T ss_pred eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHH
Confidence 445555555556666666677788888999999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..+..-+++ ...+..++++.++.+.|.+...++.+++++.+.++++ -.+-+++
T Consensus 91 g~~lF~pAa~--------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl 144 (422)
T COG0738 91 GAALFWPAAS--------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNL 144 (422)
T ss_pred HHHHHhhhhh--------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHH
Confidence 9988764422 2358889999999999999999999999999998765 4566778
Q ss_pred HHHHHhHHHHHHhhhhhhcccc-------------------cchhHHHHHHHHHHHHHHHHHHhcC-cceeecCCCCCch
Q 035554 195 FYIALNLGCLFSETVLVYAENM-------------------GYWVLGFWICAGCDILAFSSLLSGT-LRYRHFKPSGNPL 254 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~-------------------~~~~~~f~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 254 (562)
.+.++.+|+.++|.+++++..+ ..++.+|.+.+...++..+.....+ |+.+...|+....
T Consensus 145 ~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~ 224 (422)
T COG0738 145 AQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGAS 224 (422)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccccc
Confidence 8888999999999999887652 1255666655554444433333322 2111111111000
Q ss_pred hHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhh
Q 035554 255 SRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQV 334 (562)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 334 (562)
+.. .....+++ ... ++.....+... ......
T Consensus 225 ~~~--~~~~l~~~-------------------------------~~~-~~gvl~~FlYV---------------G~Eva~ 255 (422)
T COG0738 225 GSA--GLSSLFQN-------------------------------KHL-RLGVLAIFLYV---------------GAEVAI 255 (422)
T ss_pred ccc--hHHHHHhC-------------------------------hHH-HHHHHHHHHHH---------------hHHHHH
Confidence 000 00000000 001 11111111100 001112
Q ss_pred hhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 035554 335 EEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMI 414 (562)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~ 414 (562)
..++..|..+..+.+.. ......+...+..++...+.. .+.+|+ ++.+.+..-.+...+-++
T Consensus 256 gsfl~~y~~~~~g~~~~------~aa~~~s~~~~~~~vGRFig~----~lm~~~--------~~~k~Laf~a~~~ill~~ 317 (422)
T COG0738 256 GSFLVSYLEELLGLNEQ------QAAYYLSFFWVGFMVGRFIGS----ALMSRI--------KPEKYLAFYALIAILLLL 317 (422)
T ss_pred HHHHHHHHHhcCCccHH------HHHHHHHHHHHHHHHHHHHHH----HHHHHh--------CHHHHHHHHHHHHHHHHH
Confidence 23555565543222211 223333333333433332222 233332 355555444433333333
Q ss_pred HHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 035554 415 IAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMI 494 (562)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l 494 (562)
...+. .+ .+.+-+.++.|+.....+|+.++...+..| +.- ...|..-.+...|+.+-|.+
T Consensus 318 ~~~l~-----------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l 377 (422)
T COG0738 318 AVALI-----------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPL 377 (422)
T ss_pred HHHHh-----------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHH
Confidence 33333 12 344567788899999999999999999999 333 44444556667888888888
Q ss_pred HHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035554 495 LSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548 (562)
Q Consensus 495 ~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 548 (562)
.|.+.+.. +....+......|.+-++++.++..+.|.+
T Consensus 378 ~G~i~d~~----------------g~~~~~~~~pllc~lyV~~~~~~~~~~k~~ 415 (422)
T COG0738 378 QGVIADMF----------------GIQLTFLIVPLLCYLYVLFFALIGKKSKGR 415 (422)
T ss_pred HHHHHHhh----------------hhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 88765522 223445555666666665555555444444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-14 Score=153.32 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHH-HHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTC-VTFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i-~~~~~ 110 (562)
+..+.-.+..+..+.++..+.++++.|+++.+|++..++|.+.+...+...+..++.|+++||. +||||.. ..+.+
T Consensus 8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~ 87 (448)
T PRK09848 8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA 87 (448)
T ss_pred HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence 3444444566677788888888899999999999999999999999999999999999999993 3777755 55555
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
...+..+++... |. +.+........++...+.+++.+...++..++..+..++.+ + |.+
T Consensus 88 ~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~ 146 (448)
T PRK09848 88 PLMIFSVLVFWV---PT-------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RAR 146 (448)
T ss_pred HHHHHHHHHHhC---cC-------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHH
Confidence 444444443221 21 00001123444555566788888888888888777765532 2 556
Q ss_pred hHHHHHHH-----HhHHHHHHhhhhhhc
Q 035554 191 FYSYFYIA-----LNLGCLFSETVLVYA 213 (562)
Q Consensus 191 ~~~~~~~~-----~~lg~~~~~~~~~~l 213 (562)
..++..++ .+++..++|.+.+..
T Consensus 147 ~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 147 LGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65555443 345566666665543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-14 Score=151.79 Aligned_cols=179 Identities=12% Similarity=0.054 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYL-TCVTFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~-~i~~~~~ 110 (562)
|+-+.--+..+..+..+..+..+++.|+++++|++..++|.+..+..+.-.+..|+.|+++||. +|||| .++.+.+
T Consensus 9 ~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~ 88 (444)
T PRK09669 9 KDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI 88 (444)
T ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH
Confidence 4444444555666777777888999999999999999999999999999999999999999993 47644 5556766
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+++.+++... |.. +......++++..++.+.+......+..++.+|+.++.+ + |++
T Consensus 89 ~~~i~~~l~f~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--e---R~~ 146 (444)
T PRK09669 89 PFGVVCLLTFYT---PDF--------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR--E---RHS 146 (444)
T ss_pred HHHHHHHHHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH--H---HHH
Confidence 676666554433 320 012235566666666676666777788899999875422 2 778
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhccc-------ccchhHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAEN-------MGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~-------~~~~~~~f~i~~~~~~~~~~ 235 (562)
..++...+.++|..+++.+...+.. ..+|+..+.+.+++.++..+
T Consensus 147 l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 147 LQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888877654433221 24677777666655544443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-13 Score=141.79 Aligned_cols=382 Identities=13% Similarity=0.052 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 035554 39 LLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLG 118 (562)
Q Consensus 39 ~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~ 118 (562)
.+....++..+.+-...++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||+..+||.+.+..++.++...+
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 34445555556666677889999986 67999999999999999999999999999999545677777776666665544
Q ss_pred HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
.... . +++.+++..++..+......|...++.-+...+++.+. +|-|. .
T Consensus 85 ~~~~---~--------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~Y--G~iRl------w 133 (400)
T PF03825_consen 85 LAFS---S--------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDY--GRIRL------W 133 (400)
T ss_pred HHHh---c--------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCC--Ccchh------h
Confidence 4433 1 36667777777888888888888888887765432111 13333 3
Q ss_pred HhHHHHHHhhh-hhhccccc---chhHHHHHHHHHHHHHHHHHHhcCcceee-cCCCCCchhHHHHHHHHHHhhhcccCC
Q 035554 199 LNLGCLFSETV-LVYAENMG---YWVLGFWICAGCDILAFSSLLSGTLRYRH-FKPSGNPLSRFSQVIVASLRKINLEMP 273 (562)
Q Consensus 199 ~~lg~~~~~~~-~~~l~~~~---~~~~~f~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (562)
..+|-+++... ++++.... +....+++.+.+.++.....+ ..|+.+. ++.+++..+...+.....+|+
T Consensus 134 GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~~~~~~~~~~~~~~~~~~llk~------ 206 (400)
T PF03825_consen 134 GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKTPPKRSAKESVKKLLGLDALKLLKN------ 206 (400)
T ss_pred hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCCccccccCCCcccccchHHHHHhcC------
Confidence 34444444221 12222211 223455555543332222222 2222221 111100000000000000010
Q ss_pred CCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc
Q 035554 274 TNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS 353 (562)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (562)
++...++-...+.. .....+..+.+.|.++..+.+
T Consensus 207 ------------------------~~~~~Fll~~~l~~-----------------~~~~~~~~f~~~yl~~~gg~~---- 241 (400)
T PF03825_consen 207 ------------------------PRFLVFLLAAFLIG-----------------ISHAAYYTFFSIYLQELGGYS---- 241 (400)
T ss_pred ------------------------ccHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHcccch----
Confidence 01111111110000 000111123344444321110
Q ss_pred ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 035554 354 NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEE 433 (562)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (562)
. .........+.+.|-......+|.-+ |.+..+.+.++.+..++=...+....
T Consensus 242 -----~-----~~~g~~~~l~~~aEi~~f~~~~~~~~----r~g~~~ll~~a~~~~~vR~~l~a~~~------------- 294 (400)
T PF03825_consen 242 -----G-----STIGILWALGVVAEIPFFFFSGRFLK----RFGIKWLLLLALVAYAVRWLLYAYFS------------- 294 (400)
T ss_pred -----h-----hHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 0 01111222333344433334444433 23456666666666655555554430
Q ss_pred CccchhH----HHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhhcCCCC
Q 035554 434 TSSLSIF----WQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSS-TAIGTYVCSMILSVVMVLTTKNGKP 508 (562)
Q Consensus 434 ~~~~~~~----~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~-~~lg~~lg~~l~~~i~~~~~~~~~~ 508 (562)
.+.+ .+.+..+++|+..++...+...++.+.+|++.|++++++++.. .++|..+|+.+.|.+.+....+.
T Consensus 295 ---~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~-- 369 (400)
T PF03825_consen 295 ---DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG-- 369 (400)
T ss_pred ---CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh--
Confidence 1212 2233456899999999999999999999999999999998765 68999999999998776432111
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 509 GWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 509 ~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
...+..+|.+.+++.++..+.+++..|+
T Consensus 370 --------~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 370 --------MFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1123456677777777777777766554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-14 Score=149.01 Aligned_cols=175 Identities=8% Similarity=-0.021 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccch-HHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSD----SYLGRY-LTCVTFQAF 111 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grk-~~i~~~~~~ 111 (562)
-+.--+..+..++.+..+.++++.|+++.+|++...+|.+..+..+.-.+..|+.|+++| | +||| +.++.+...
T Consensus 8 ~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~ 86 (473)
T PRK10429 8 KLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLA 86 (473)
T ss_pred HHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHH
Confidence 333445666677888888899999999999999999999999999999999999999999 5 5984 455567767
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~ 190 (562)
.+++.+++... |.. +......++++..++.+++......+..++..|+.++ ++ |.+
T Consensus 87 ~~i~~~llf~~---p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~ 143 (473)
T PRK10429 87 NSVVLFLLFSA---HLF--------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQ 143 (473)
T ss_pred HHHHHHHHHcC---CCC--------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHH
Confidence 77776665432 210 0112344555666677788888888899999998753 34 888
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcc-------cccchhHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAE-------NMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~-------~~~~~~~~f~i~~~~~~~~~~ 235 (562)
..++.....++|+.+.+.+...+. +..+|+....+.++..+++.+
T Consensus 144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~ 195 (473)
T PRK10429 144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTI 195 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 888877777887666654443221 112456555555554444333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=147.61 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=133.4
Q ss_pred hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC
Q 035554 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS 144 (562)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (562)
.++-++.+.|++++++.+...+..++.|.+.|| +|+|-.+++|..++..+.+++.+..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~--------------------- 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN--------------------- 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 356677899999999999999999999999999 8999999999999999999998873
Q ss_pred CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHH
Q 035554 145 PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFW 224 (562)
Q Consensus 145 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~ 224 (562)
+.+.++++|.++|+|.++...+..++++|.||+++. |++++++.-.+..+|-.+||.++|.+.+..|+..+|.
T Consensus 158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl 230 (464)
T KOG3764|consen 158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL 230 (464)
T ss_pred --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence 377799999999999999999999999999998873 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 035554 225 ICAGCDILAFSSLLSG 240 (562)
Q Consensus 225 i~~~~~~~~~~~~~~~ 240 (562)
+.+++.++-..+.++.
T Consensus 231 VL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 231 VLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 9988877766665444
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-14 Score=155.53 Aligned_cols=141 Identities=18% Similarity=0.097 Sum_probs=126.3
Q ss_pred HhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCC
Q 035554 64 SVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH 143 (562)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (562)
+.++.+.....+..+++.+|..+++++.|.++|| +|||++++.++++.+++.++.+++ +
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a---~----------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA---P----------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---C-----------------
Confidence 4566788889999999999999999999999999 899999999999999999888887 3
Q ss_pred CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHH
Q 035554 144 SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGF 223 (562)
Q Consensus 144 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f 223 (562)
+.+.+++.|++.|++.+....+...++.|.+++++ |+.+.++ ......++.+++..++++.. +||+.+
T Consensus 170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~ 237 (521)
T KOG0255|consen 170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLF 237 (521)
T ss_pred ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence 38889999999999999999999999999999998 9999999 88888888899989999877 899999
Q ss_pred HHHHHHHHHHHHHH
Q 035554 224 WICAGCDILAFSSL 237 (562)
Q Consensus 224 ~i~~~~~~~~~~~~ 237 (562)
++..+..++.++.+
T Consensus 238 ~~~~~~~~~~~~~~ 251 (521)
T KOG0255|consen 238 WIISIPSGLFLLLW 251 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 98887776665553
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-13 Score=143.28 Aligned_cols=177 Identities=10% Similarity=-0.096 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHH--HHHHHHHHHHHHHH-HHHhhhcccchHHHHHHHHH-H
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTF--SRWMGSLYLSSLMG-AFLSDSYLGRYLTCVTFQAF-S 112 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~--~~~~~~~~~~~~~~-G~laDr~~Grk~~i~~~~~~-~ 112 (562)
...+....+.+.+-+....+.+|.|+++ .|.|.++.|... ....+...+..|+. ++++|| +||||..++.+.+ .
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence 4556666777778888888999999986 599999999873 45566676666666 668999 7999997665533 2
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.+....+.... +. .....+++....+.++..+...+...++..|..++++ ++...
T Consensus 81 ~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~ 135 (390)
T TIGR02718 81 SACLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGN 135 (390)
T ss_pred HHHHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHH
Confidence 22222222110 11 0112333444455566666777777777777666555 66777
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+....+..+|..+++...+++.+..||+..|++.++..++..+..+..
T Consensus 136 ~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 136 AVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 778888889999999888899888999999998887776655554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-15 Score=144.41 Aligned_cols=118 Identities=18% Similarity=0.109 Sum_probs=104.5
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCc
Q 035554 67 RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPA 146 (562)
Q Consensus 67 g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (562)
+.+..-+|.+-+.|.++..+.++..|.+||| .|||.++++|++..++...+++.+.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~----------------------- 119 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR----------------------- 119 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 3344568888899999999999999999999 6999999999999999888887762
Q ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 147 ETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 147 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
++..++++|++.|+..|-. ..+.++++|.+++++ |+.+++....+..+|..+||+++|++.+
T Consensus 120 ~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 3666778899999999875 567899999999988 9999999999999999999999999987
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=154.09 Aligned_cols=357 Identities=13% Similarity=0.094 Sum_probs=218.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccchHHHH-HHHHHHHHHHHH
Q 035554 44 QGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSD----SYLGRYLTCV-TFQAFSIIGLLG 118 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grk~~i~-~~~~~~~~~~~~ 118 (562)
.+..++.+.....++..|+++.+|+++...|.+..+..+...+..|+.|+++| | +||||..+ +|..+..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHH
Confidence 35556666667778999999999999999999999999999999999999999 7 79777665 677777777776
Q ss_pred HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHH
Q 035554 119 LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIA 198 (562)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 198 (562)
+.... |. +.+......++.+..++..++......+..++..|+.++++. |.+..++....
T Consensus 89 lf~~~--p~-------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~ 148 (428)
T PF13347_consen 89 LFSPP--PA-------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIF 148 (428)
T ss_pred hhccc--cc-------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHH
Confidence 65430 10 000112344556677777899999999999999999876431 88999998888
Q ss_pred HhHHHHHHhhhhhhccccc-------chhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhccc
Q 035554 199 LNLGCLFSETVLVYAENMG-------YWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLE 271 (562)
Q Consensus 199 ~~lg~~~~~~~~~~l~~~~-------~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (562)
.++|..+...+.+.+.+.. +|++...+.+++.+++.++.....++...+.+++++.....+.+
T Consensus 149 ~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~---------- 218 (428)
T PF13347_consen 149 SMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSL---------- 218 (428)
T ss_pred HHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccch----------
Confidence 8888876555555443221 57777777666666555554443333111111111100000000
Q ss_pred CCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCC
Q 035554 272 MPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTG 351 (562)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (562)
+.....+....+-....... ...........+|.....+.+ .
T Consensus 219 ---------------------~~~~~nr~~~~l~~~~~~~~----------------~~~~~~~~~~~y~~~~vl~~~-~ 260 (428)
T PF13347_consen 219 ---------------------RSLFRNRPFRILLLAFFLQW----------------LAFALMNTFLPYYFTYVLGNE-G 260 (428)
T ss_pred ---------------------hhhcccchHHHHHHHHHHHH----------------hhhhhhhhHHHHHHHHHhcCc-h
Confidence 00000011111101000000 000000012223333222221 1
Q ss_pred CcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 035554 352 VSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGG 431 (562)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 431 (562)
..+.......+..++..++.. ++.+|+++|+ ....+.++.+++.+...+..
T Consensus 261 ------~~~~~~~~~~~~~~v~~~~~~----~l~~r~gk~~--------~~~~~~~~~~~~~~~~~~~~----------- 311 (428)
T PF13347_consen 261 ------LISIFMLIFFVASIVGSPLWG----RLSKRFGKKK--------VYIIGLLLAALGFLLLFFLG----------- 311 (428)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHH----HHHHHcccee--------ehhhhHHHHHHHHHHHHHHH-----------
Confidence 112222233334444444444 4445654422 45667777777777665551
Q ss_pred CCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 035554 432 EETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIP-------NGLKSLGIALSMSSTAIGTYVCSMILSVVMVLT 502 (562)
Q Consensus 432 ~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~ 502 (562)
..+.++..+..++.|++.+......++...|..+ ++..|...|++++..-++..+++.+.+.+....
T Consensus 312 ----~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 312 ----PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred ----hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 1466778889999999999999888899988887 355799999999999999999999998776644
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-13 Score=148.03 Aligned_cols=178 Identities=15% Similarity=0.031 Sum_probs=130.7
Q ss_pred chHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHH
Q 035554 34 WRCG-TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG-----RYLTCVT 107 (562)
Q Consensus 34 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rk~~i~~ 107 (562)
++.. ..+....+...+. +.+...++.++++++|+|.++.+...+...+...+-. +.|.++|| ++ ||+.+++
T Consensus 24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~-~~i~G~rRr~~l~~ 100 (468)
T TIGR00788 24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-FAGVMSDT-FPLFGYTKRWYLVL 100 (468)
T ss_pred cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHh-cCCCCccchHHHHH
Confidence 4443 4444466777777 8888888999999999999999988888888777765 59999999 67 6777777
Q ss_pred HHHHHH-HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 108 FQAFSI-IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
+.++.. ++...++.. + .......+.+++.+++.+...++..++..|..+ ++++
T Consensus 101 ~~~l~~~~~~~~l~~~---~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~--- 154 (468)
T TIGR00788 101 SGLLGSAILYGLLPGK---V-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS--- 154 (468)
T ss_pred HHHHHHHHHHHhcccc---c-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---
Confidence 765552 322222211 1 123344457788899999999999999999998 4421
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.++...++.+...++|..+++.++|++.+..+|+..|++.++..++..+...+.
T Consensus 155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 155 AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence 144566777777889999999999999998899999998887776664444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-14 Score=158.71 Aligned_cols=201 Identities=15% Similarity=0.144 Sum_probs=152.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
..+|.+...+....+......++.......+.++|+++..+.|++.+.+.++..++.++.|+++|| +||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHH
Confidence 334555444444555555666777777778899999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCC-----------CCCcCC-----------------CCC--CchHHHHHHHHHHHHHh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGK-----------IGQLCD-----------------PHS--PAETAIFYISIYLFALG 161 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-----------------~~~--~~~~~~~~~~~~l~g~g 161 (562)
++++.+++++.+.+.. ++.+++ ..+.|. ..+ ...+..++++|+++|+|
T Consensus 108 ~~lg~ll~alphf~~~--~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG 185 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSG--RYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG 185 (633)
T ss_pred HHHHHHHHhChHHhcC--CccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc
Confidence 9999999887632110 111100 011231 111 11356788999999999
Q ss_pred cccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccccc----------------------ch
Q 035554 162 IGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMG----------------------YW 219 (562)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~----------------------~~ 219 (562)
.+...+...+++.|.+|+++ |+..+++++....+|.++|+++++++.+.+ +|
T Consensus 186 ~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaW 259 (633)
T TIGR00805 186 ATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAW 259 (633)
T ss_pred CCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHH
Confidence 99999999999999999988 999999999999999999999998876532 37
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC
Q 035554 220 VLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 220 ~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
+..|++.+++.++..+.++...
T Consensus 260 wl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 260 WIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 8888887776666555444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-20 Score=194.72 Aligned_cols=137 Identities=19% Similarity=0.205 Sum_probs=114.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHH
Q 035554 72 EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIF 151 (562)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (562)
+.++..+...++..++.+++|+++|| +|||+++.++.++..++.++..++ +. ..+.+.+
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~---~~-----------------~~~~~~~ 105 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFA---PS-----------------YNNFWML 105 (451)
T ss_pred HHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccc---cc-----------------ccccccc
Confidence 46788999999999999999999999 799999999999999999988887 31 0136779
Q ss_pred HHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc---cchhHHHHHHHH
Q 035554 152 YISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM---GYWVLGFWICAG 228 (562)
Q Consensus 152 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~~~~~~f~i~~~ 228 (562)
.++|++.|++.|...+..+.++.|..|++. |+...++.+....+|..++..++-.+.+. .+||..+++..+
T Consensus 106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~ 179 (451)
T PF00083_consen 106 LIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAI 179 (451)
T ss_pred cccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999888 99999999999999998887665444332 359998887777
Q ss_pred HHHHHHH
Q 035554 229 CDILAFS 235 (562)
Q Consensus 229 ~~~~~~~ 235 (562)
..++..+
T Consensus 180 ~~l~~~~ 186 (451)
T PF00083_consen 180 PSLLVLL 186 (451)
T ss_pred ccccccc
Confidence 6544433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-12 Score=134.99 Aligned_cols=384 Identities=11% Similarity=0.055 Sum_probs=212.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS- 112 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~- 112 (562)
.+..|.+-...++..+++-...++++.+++++.|+|..++|.+.++..+...+.+|+.|.++|| +|.||-++....+.
T Consensus 6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~ 84 (412)
T PF01306_consen 6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILL 84 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHH
Confidence 3677888888888888888889999999999999999999999999999999999999999999 79666554333222
Q ss_pred -HHHH-HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHH----HHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 113 -IIGL-LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLF----ALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 113 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
..+- +...+. |.+. .-++++.++. ++......|...++.-+.- |
T Consensus 85 ~l~~pff~~v~~---pll~-------------------~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--------r 134 (412)
T PF01306_consen 85 LLFGPFFIYVFG---PLLQ-------------------SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--------R 134 (412)
T ss_dssp HTCHHHHHHTHH---HHHH-------------------TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHH---HHHH-------------------HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--------H
Confidence 1122 222222 2100 0022333332 3333333444444433321 1
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCC---chh-HH-HHHH
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGN---PLS-RF-SQVI 261 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~ 261 (562)
..+.=+|=......+|.+++..++|++.+ .+-+..||+.....++..++.+..++..+++.+..+ ..+ +. .+..
T Consensus 135 ~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (412)
T PF01306_consen 135 RNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDV 213 (412)
T ss_dssp HHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHH
T ss_pred HhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHH
Confidence 02223333455677889999999999876 456778887766555555444444432211110000 000 00 0000
Q ss_pred HHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHH
Q 035554 262 VASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLF 341 (562)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (562)
.. ..+.+.-|.-...++ .. .+.....+|+.+.|
T Consensus 214 ~~--------------------------------l~k~~~fw~~~l~v~-g~--------------~~~Y~vfdqqf~~y 246 (412)
T PF01306_consen 214 LS--------------------------------LFKMRNFWFFVLFVI-GV--------------AAIYDVFDQQFPIY 246 (412)
T ss_dssp HH--------------------------------HTTSHHHHHHHHHHH-HH--------------HHHHHHHHHHHHHH
T ss_pred HH--------------------------------HhcchhHHHHHHHHH-HH--------------HHHHHHHHHHHHHH
Confidence 00 000000011011000 00 01111223344555
Q ss_pred HHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 035554 342 VEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQ 421 (562)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~ 421 (562)
........ +..+..+. -....+.+.+.+.....++.-+ |.++...+.++.+++++=...+++.
T Consensus 247 ~~~~f~~~------~~g~~~~G-----~l~s~~v~~E~~~m~~~p~li~----rig~k~~Lllag~i~~iRi~~~~~~-- 309 (412)
T PF01306_consen 247 FASFFQSA------GQGNQMYG-----YLWSVQVFLEALMMFFSPWLIN----RIGAKNLLLLAGVIMAIRIIGSGFA-- 309 (412)
T ss_dssp HHHTSSSH------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHhccc------ccChhHHh-----HHHHHHHHHHHHHHHHHHHHHH----hcChHhHHHHHHHHHHHHHHHHhhh--
Confidence 44321100 00111111 1122222333333222223222 1235556666666666666666554
Q ss_pred HHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhHh
Q 035554 422 RRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALS-MSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg~~lg~~l~~~i~~ 500 (562)
.+++++.+.-.++++-..+...+..-++.+..|++..++...+. .+..++|..+.+.+.|..++
T Consensus 310 ---------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd 374 (412)
T PF01306_consen 310 ---------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD 374 (412)
T ss_dssp ----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred ---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh
Confidence 57778888889999999999999999999999999998888884 78889999999999887766
Q ss_pred hhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 501 LTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 501 ~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.-+++..|++++++.+...++..+..++
T Consensus 375 ----------------~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 375 ----------------RIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ----------------hcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 3355667888888877777766666554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-12 Score=136.01 Aligned_cols=176 Identities=11% Similarity=-0.008 Sum_probs=127.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
++|..+...+....+. ...|+.. .....+++++|++..+.+++.+... ...++.+++|+++|| +|||+++.++.++
T Consensus 25 ~Rw~~lva~~~~~~~~-g~~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr-~G~R~vllig~ll 100 (591)
T PTZ00207 25 RRFALLVLGAFCSICT-SFMYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDY-LGPRPIFVLSMTV 100 (591)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence 4444444444444333 2334443 3445678899999999998887743 344567789999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+.++.++++++.+ .. ...+.+.+++.|++.|+|.+...+.....+.++|| ++ |+.+
T Consensus 101 ~~iG~ll~ala~~-~~----------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a 156 (591)
T PTZ00207 101 FCLGTLLFALTFQ-EV----------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAV 156 (591)
T ss_pred HHHHHHHHHHHhc-cc----------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHH
Confidence 9999998887621 00 01258889999999999999888888889999996 56 8999
Q ss_pred HHHHHHHHhHHHHH-HhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLF-SETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 192 ~~~~~~~~~lg~~~-~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
.++...+.++|+++ +++..+++. .+|+..|++.++..++..++.
T Consensus 157 ~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 157 VAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999975 555555554 357766766665554444433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-13 Score=143.15 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=120.0
Q ss_pred HHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 035554 56 VNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGK 135 (562)
Q Consensus 56 ~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (562)
.....++..++|-+ ....|+.+...++..+..++.|.|+|. ||||..++.+.++..+|.+.++-+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 34556888899854 678889999999999999999999999 7999999999999999999988762
Q ss_pred CCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 136 IGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
+...++.+..+.|+|.|... .....++|..|.+. |..+..+.....-+....+|.++..+..
T Consensus 130 -----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 130 -----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred -----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 36679999999999977765 44566899998877 7777766665555555567777766666
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 035554 216 MGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 216 ~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
..+|||.|++.++...++++..
T Consensus 192 ~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 192 HSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred CCCcchHHHHHHHHHHHHHHHH
Confidence 6799999999888766665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-12 Score=137.20 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHH-HHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTCV-TFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i~-~~~~ 110 (562)
|+-+.--+..+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++||. +||||..+ ++.+
T Consensus 9 ~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i 88 (460)
T PRK11462 9 KEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL 88 (460)
T ss_pred hHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence 3444444666667777788888999999999999999999999999999999999999999973 68876655 5666
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+++.+++... |.. +.......+.+.-++..++......+..++.+|+.++.+ + |++
T Consensus 89 ~~~i~~~llf~~---p~~--------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~ 146 (460)
T PRK11462 89 PFGIVCVLAYST---PDL--------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RIS 146 (460)
T ss_pred HHHHHHHHHHhC---CCC--------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHH
Confidence 777776665433 320 112234556666667788888888899999999876533 2 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccc-------cchhHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENM-------GYWVLGFWICAGCDILAF 234 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~-------~~~~~~f~i~~~~~~~~~ 234 (562)
..++...+.++|..+++.+...+.+. .+|.....+.+++.+++.
T Consensus 147 l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~ 197 (460)
T PRK11462 147 LQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999888876665443322 246655555444444433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=146.33 Aligned_cols=176 Identities=13% Similarity=0.145 Sum_probs=118.2
Q ss_pred CchHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHhh-------CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 035554 33 GWRCGTLLLVNQ---GLANLAFAGVEVNMVLFAKSVL-------RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY 102 (562)
Q Consensus 33 ~~~~~~~l~~~~---~~~~~~~~~~~~~~~~y~~~~l-------g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk 102 (562)
.||.+-.+.++. +......+.+....+.+-.-.. ++++...+.+..+..++..+++++.||++|| +|||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK 114 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRK 114 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcch
Confidence 455555444443 3344555555544444332221 2556678888999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCc
Q 035554 103 LTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP 182 (562)
Q Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 182 (562)
+++...+++++++++.+.+. - |.++.....+++...|+++|+|.|+=.|...+..+|..-.+.
T Consensus 115 ~vYG~~liImIi~t~~~~~s----~------------~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~- 177 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLS----V------------GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT- 177 (538)
T ss_pred hhhhHHHHHHHHHHHHhccC----C------------CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc-
Confidence 99999999999999855543 1 122222457788899999999999999999999998655444
Q ss_pred hhhhhhhhhHHH----HHHHHhHHHHHHhhhhhhcccc-----------cchhHHHHHHHHHHH
Q 035554 183 KEKKSKTSFYSY----FYIALNLGCLFSETVLVYAENM-----------GYWVLGFWICAGCDI 231 (562)
Q Consensus 183 ~~~~~r~~~~~~----~~~~~~lg~~~~~~~~~~l~~~-----------~~~~~~f~i~~~~~~ 231 (562)
|+...+. ..++.-.|+.++-++..-.... .-||..|.+.++..+
T Consensus 178 -----RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 178 -----RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred -----ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 6665544 4555555555555444332221 238888777665443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-13 Score=140.08 Aligned_cols=150 Identities=9% Similarity=0.010 Sum_probs=124.5
Q ss_pred HhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCC
Q 035554 64 SVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH 143 (562)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (562)
++++....+.+.+.+++.+++.++.+++|+|.|| ++-.+.+....+++.+-.++.+..+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~-------------------- 132 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVH-------------------- 132 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4667777889999999999999999999999999 7977777766666655554444442
Q ss_pred CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhc------cccc
Q 035554 144 SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYA------ENMG 217 (562)
Q Consensus 144 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l------~~~~ 217 (562)
+++.+++.|++.|+.++..+|....+++.++.+++ |+.-+++++...++|.++|+++...+ ....
T Consensus 133 ---s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~ 203 (495)
T KOG2533|consen 133 ---SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA 203 (495)
T ss_pred ---hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence 37779999999999999999999999999999988 99999999999999999999888775 2346
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCcc
Q 035554 218 YWVLGFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 218 ~~~~~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
||++.|++.+++.++..++.++..|.
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEecC
Confidence 99999999998777666665554443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.7e-13 Score=140.70 Aligned_cols=416 Identities=15% Similarity=0.121 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHHHhhHH---HHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEV---NMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~---~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
-|.+.++.|+.++..+++.. .+-..++++++.+..+++|+.++......+..|+.+.+.|| +|.|.+.+.|.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHH
Confidence 35556666666666665443 33455677899999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHH-HHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISI-YLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
+|.++.+++. +.+.+++.. ++.|+|.|+...+...++..+|+ ++ |+.+.
T Consensus 123 ~g~~lssF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kk------R~lA~ 172 (509)
T KOG2504|consen 123 LGLLLSSFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KK------RALAT 172 (509)
T ss_pred HHHHHHHHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HH------HHHHH
Confidence 9999999983 255555544 45789999988888888887764 33 78888
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhc---
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKIN--- 269 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 269 (562)
++-..+..+|..+-|.+..++.+.+|||..+++-..+.+-..+.....+|.....+|+ +. ++... .....+
T Consensus 173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~-~~-~~~~~----~~~~~~~~~ 246 (509)
T KOG2504|consen 173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN-EE-KDLRN----SAASVESTP 246 (509)
T ss_pred hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch-hh-hhhcc----ccccccccc
Confidence 8888888888888888989999999999999887777665555555555433222222 00 00000 000000
Q ss_pred ----ccCCCCCCCccc---cchhhhhccCcccc--cccCchhHHHHHHhhhcccccccCCCCCccceeehh-hhhhhhhh
Q 035554 270 ----LEMPTNGGGLFE---VHVREYEANGTRRI--LHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTV-TQVEEMLS 339 (562)
Q Consensus 270 ----~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 339 (562)
...++....... ...+.......+.. ........+|...+. +..+..+.+... ..+....+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~---------~~~fl~~~~~~~~~~~g~~~p 317 (509)
T KOG2504|consen 247 KPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLK---------DPKFLLLALSNLFAYLGFNVP 317 (509)
T ss_pred cccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHc---------CchHHHHHHHHHHHHHHHHHH
Confidence 000000000000 00000000000000 000000011111110 000000000000 11111122
Q ss_pred HHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 035554 340 LFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIV 419 (562)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~ 419 (562)
.+..-....+..+ .. ....+.+.++-..-...++..+....... .+......++++..+++.+...+.
T Consensus 318 ~~~l~~~~~~~g~-----~~--~~aa~l~Siigi~~i~gRi~~G~laD~~~-----~~~~~~~~~~ll~~gl~~~~~p~~ 385 (509)
T KOG2504|consen 318 FVYLPSYAKSLGL-----SS--NDAAFLLSIIGVSDIIGRIILGLLADKPG-----IRALVLFLLTLLIAGLARLFLPFA 385 (509)
T ss_pred HHHHHHHHhhcCC-----Ch--hhhHHHHHHHHHhhhhhhhhhhhhcCccc-----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111111 10 01111111222222222222222222111 223444456666666666554443
Q ss_pred HHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 035554 420 EQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVM 499 (562)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~ 499 (562)
.+.+.++..-+++|+..+...........+.++.+.-+.+.|+..++.+++..+|+++.+.+.
T Consensus 386 -----------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~ 448 (509)
T KOG2504|consen 386 -----------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY 448 (509)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence 455667777889999999888887789999999999999999999999999999999988655
Q ss_pred hhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035554 500 VLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCA 542 (562)
Q Consensus 500 ~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 542 (562)
+.+ ++|+..|...++..+++....++..
T Consensus 449 d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 449 DIT---------------GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred ecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence 432 2245667777777777776655554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=142.70 Aligned_cols=180 Identities=17% Similarity=0.118 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHH-H
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-GRYLTCVTFQA-F 111 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~i~~~~~-~ 111 (562)
.|.+|++.++.++.++..|++..|.|+|+.++.|+|..++++.++.|..++..++++.||+|||++ |||....+.+. .
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999999999998 77766654443 3
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+....+ |+ .+..+..++.+.+|+..-+..-.+.....|..|.+- .|++
T Consensus 331 i~~~~~~~w~~---~~------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA 383 (448)
T COG2271 331 ITASLVLYWLA---PN------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA 383 (448)
T ss_pred HHHHHHHHHcC---CC------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence 44444444443 32 245666677777887777766666667788877666 7899
Q ss_pred HHHHHHHHhH-HHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 192 YSYFYIALNL-GCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 192 ~~~~~~~~~l-g~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+...++..+ |+.++....+++.+.+||...|.+..++.+++.+++...
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999998999999988777766666655544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.3e-14 Score=149.91 Aligned_cols=179 Identities=9% Similarity=0.059 Sum_probs=131.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
+++.....+...++.++.+|++..++|.|+++.+|++..+.+.......++..++.+++|+++|| +|||+++.++.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 44555555555566778999999999999999999999888888888889999999999999999 79999998887654
Q ss_pred HHHHHH-HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 113 IIGLLG-LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 113 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.++... +..... .....+++++++.+++.+...+....+..+.+|++. |+++
T Consensus 327 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~ 379 (490)
T PRK10642 327 FVLAIPAFILINS---------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSA 379 (490)
T ss_pred HHHHHHHHHHHhC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHH
Confidence 433322 222110 124556778888888777777777888889999988 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.++.+....+++.++|.+.+++.+.. +|+.++++..+..+++.+..++
T Consensus 380 ~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 380 LAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 99855556677788999999887654 4666665544444444444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=144.86 Aligned_cols=184 Identities=13% Similarity=-0.021 Sum_probs=134.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+++++.....+...++..+++|....+++.|+++.+|++......+.....+...++.++.|+++|| +||||++..+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~ 324 (438)
T PRK09952 246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGAL 324 (438)
T ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHH
Confidence 3455555555556777888999999999999999999998766655556667778888999999999 799999988876
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+.+..... . ......+++..++.+++.+...+...++.+|.+|.+. |++
T Consensus 325 ~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t 379 (438)
T PRK09952 325 IGTLSAFPFFMALE--A-----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS 379 (438)
T ss_pred HHHHHHHHHHHHHH--c-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence 65554433322210 0 0123344445566678888878888999999999887 888
Q ss_pred hHHH-HHHHHhHHHHHHhhhhhhccccc--chhHHHHHHHHHHHHHHHHHHhc
Q 035554 191 FYSY-FYIALNLGCLFSETVLVYAENMG--YWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 191 ~~~~-~~~~~~lg~~~~~~~~~~l~~~~--~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+.++ +..+..+|+.++|.+.+++.+.. +|...+.+..++.+++.+..+..
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 8888 44455689999999999987643 47888877777666666655443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-11 Score=116.30 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=136.0
Q ss_pred HHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q 035554 47 ANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSF 126 (562)
Q Consensus 47 ~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~ 126 (562)
.|...-++-+.+ .-+++++|.|.+.+|.+.+.-.+...+..+++.+|+.| +|.++.+..++++.++|..+=...
T Consensus 24 LR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~---- 97 (395)
T COG2807 24 LRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG---- 97 (395)
T ss_pred cchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc----
Confidence 445555555544 34788999999999999999999999999999999999 799999999999998888765443
Q ss_pred ccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHH
Q 035554 127 LLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFS 206 (562)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~ 206 (562)
+...++.+-.+.|.|.+......++++.+.||.+. +..+++|....++|+.++
T Consensus 98 --------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl~~~aaLa 150 (395)
T COG2807 98 --------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSLGAGAALA 150 (395)
T ss_pred --------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHHHHHHHHH
Confidence 36678889999999999999999999999998544 688999999999999999
Q ss_pred hhhhhhccccc-chhHHHHHHHHHHHHHHHHHHhc
Q 035554 207 ETVLVYAENMG-YWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 207 ~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+.+...+.+.. ||+.....-++..++++++++..
T Consensus 151 a~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 151 AALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred hhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998888776 79998888777777777777654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-10 Score=119.94 Aligned_cols=371 Identities=13% Similarity=0.099 Sum_probs=219.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHH-HHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTC-VTFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i-~~~~~ 110 (562)
|+-+.--...+..++.+-.+..++..|.++.+|+++..+|.++.+.-+.=++.-|+.|.++||. +||+|-. +.+.+
T Consensus 12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i 91 (467)
T COG2211 12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI 91 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence 4445555666777777778888999999999999999999999999999999999999999975 6766554 46667
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..++...++..+ |. -+........++--++.++++.....+..++.+++.++.+ | |.+
T Consensus 92 p~~i~~~l~F~~---p~--------------~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E---R~~ 149 (467)
T COG2211 92 PFAIVAVLLFIT---PD--------------FSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E---RAS 149 (467)
T ss_pred HHHHHHHHHHcC---CC--------------cccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H---HHH
Confidence 777777777665 31 0112345666677778889999999999999999876533 3 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhccc-------ccchhHHHHHHHHHHHHHHHHH-HhcCcceeecCCCCC-chhHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAEN-------MGYWVLGFWICAGCDILAFSSL-LSGTLRYRHFKPSGN-PLSRFSQVI 261 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~-------~~~~~~~f~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 261 (562)
..++...+.++|..+...+.+.+.. ..||+..-.+.+++..+..+.. .-.++|...+.|.++ ...+....+
T Consensus 150 l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~ 229 (467)
T COG2211 150 LTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSF 229 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHH
Confidence 9999999999997776555544432 2356655554444444333332 223333332222221 111111111
Q ss_pred HHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHH
Q 035554 262 VASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLF 341 (562)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (562)
....+++ .++.+-...++. ....++.+....|
T Consensus 230 ~~~~~Nr-------------------------------p~~~~l~~~l~~-----------------~~~~~i~~s~~~y 261 (467)
T COG2211 230 LLIFKNR-------------------------------PLLLLLLMNLLL-----------------FIAFNIRGSIMVY 261 (467)
T ss_pred HHHHccc-------------------------------hHHHHHHHHHHH-----------------HHHHHHHhhhhhe
Confidence 1111110 000000000000 0000000011111
Q ss_pred HHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHH-hhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 035554 342 VEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVP-LYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVE 420 (562)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~ 420 (562)
+.++ .+..................+...+..| +.+|+++ .+....+.++.+++.....+..
T Consensus 262 y~~y----------~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gk--------k~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 262 YVTY----------VLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGK--------KKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred eEEE----------EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhch--------HHHHHHHHHHHHHHHHHHHhhc
Confidence 1111 0110001110111111111222122223 3344433 2355667777777777665651
Q ss_pred HHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCC-------chhHHHHHHHHHHHHHHHHHHHHH
Q 035554 421 QRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIP-------NGLKSLGIALSMSSTAIGTYVCSM 493 (562)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gl~~~~~~lg~~lg~~ 493 (562)
..+.++.+...++.++|.+...+..++...+.+. .+..|...|.+.++.=+|..++..
T Consensus 324 ---------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~ 388 (467)
T COG2211 324 ---------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF 388 (467)
T ss_pred ---------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 2455666777799999999999888888887654 466788899999999999999999
Q ss_pred HHHHhHhhhhcCCCCCCCCCC
Q 035554 494 ILSVVMVLTTKNGKPGWVPPN 514 (562)
Q Consensus 494 l~~~i~~~~~~~~~~~w~~~~ 514 (562)
+.+.+.... |+.++.
T Consensus 389 ~~g~~L~~~------Gyv~~~ 403 (467)
T COG2211 389 IPGWILGAI------GYVPNV 403 (467)
T ss_pred HHHHHHHHc------CCCCCc
Confidence 888877654 566554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=135.69 Aligned_cols=177 Identities=18% Similarity=0.112 Sum_probs=133.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
++|..+..+....+....++....++|.|+++++|++..+.+.+.+...++..++.+++|+++|| +|||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHH
Confidence 44444444444455555666667789999999999999999998888778888899999999999 79999888776555
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.+....+... + +.+.+++.+++.+++.|...+....+..|.+| ++ |+++.
T Consensus 293 ~~~~~~~~~~---~--------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~------~g~~~ 342 (393)
T PRK15011 293 VCFYAGMLMA---H--------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQ------AGSAT 342 (393)
T ss_pred HHHHHHHHHH---h--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC------cchHH
Confidence 5444333322 1 24556667777777766666667777888876 34 67899
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
++++...++|..++|.++|.+.+..||+..|++..++.+++.++.+..
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 998888999999999999999988899999998887777776665543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=138.47 Aligned_cols=173 Identities=14% Similarity=0.061 Sum_probs=133.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+++.++......++....++.+..++|.|+++++|.+..+.+.......++..++.++.|+++|| +|||+.+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~ 294 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVL 294 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHH
Confidence 333457777777888888899999999999999999999999999999999999999999999999 7999988766554
Q ss_pred HHHHH-HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SIIGL-LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+.. ....... . ....+.+++...+.+++.+...+...+++.|.+|+++ |++
T Consensus 295 ~~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~ 348 (394)
T TIGR00883 295 AALLAVPLLMALL--D------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYT 348 (394)
T ss_pred HHHHHHHHHHHHh--c------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eee
Confidence 43332 2221110 0 0124556667777888888888999999999999888 888
Q ss_pred hHHH-HHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHH
Q 035554 191 FYSY-FYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDI 231 (562)
Q Consensus 191 ~~~~-~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~ 231 (562)
+.++ ++....+|..++|.++|++.+..| |+..++...++.+
T Consensus 349 ~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 349 GASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred EeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 8888 456667899999999999988777 7776665554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=137.70 Aligned_cols=176 Identities=15% Similarity=0.088 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+|.+.+..++....++++..++|.|+++++|+|..++++......++..++.+++|+++|| +|||+.+.....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHH
Confidence 568888888888888899999999999999999999999999999999999999999999999 7999887765544443
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..+..+.. . .+....++.+++.|+..............|.+|++. |+++.++
T Consensus 337 ~~~~~~~~~--~-------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi 389 (467)
T PRK09556 337 IFTLGVYQH--A-------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGI 389 (467)
T ss_pred HHHHHHHHh--c-------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHH
Confidence 332222220 0 124445566666665443333333456679999888 9999999
Q ss_pred HHHHHhH-HHHHHhhhhhhccc------------ccchhHHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNL-GCLFSETVLVYAEN------------MGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 195 ~~~~~~l-g~~~~~~~~~~l~~------------~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.+...++ |+.++|.+.|++.+ ..+|+..|++..++.+++.+..+
T Consensus 390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 9999997 77999999999988 56899999888777776655544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=134.06 Aligned_cols=171 Identities=14% Similarity=0.091 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..+.+....++..+.......+.+.|. +++|.+..+.+.+.+.+.++..++.++.|+++|| +|||+.+.++.++..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~ 282 (377)
T TIGR00890 205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAV 282 (377)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHH
Confidence 4555555566666666666666677775 4688999899999999999999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.+. +. .....++...++.+++.+...+..+++..|.+|+++ |++..++
T Consensus 283 ~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~ 335 (377)
T TIGR00890 283 GMAAMLFI---PM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGF 335 (377)
T ss_pred HHHHHHHc---cc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHH
Confidence 87766554 21 112334455667788888887888889999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAF 234 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~ 234 (562)
++...++|..++|.+.+++.+..||+..|.+.+++.+++.
T Consensus 336 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 336 LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999988999999988877665543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-09 Score=115.28 Aligned_cols=388 Identities=13% Similarity=0.017 Sum_probs=206.3
Q ss_pred HHHHhhHHHHHHHHHHhhCCC-----------------------------hhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQT-----------------------------NAEASNTFSRWMGSLYLSSLMGAFLSDSYL 99 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s-----------------------------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~ 99 (562)
+....+..++|.|+++...-+ .+-.+...++..+...+..|+.|.++|+ -
T Consensus 19 f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~~all~P~lGa~aD~-~ 97 (477)
T PF11700_consen 19 FATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLLQALLAPFLGAIADY-G 97 (477)
T ss_pred chhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcc-c
Confidence 345556778889988764211 1223566778888888999999999998 6
Q ss_pred cchHHHHHHH-HHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCC
Q 035554 100 GRYLTCVTFQ-AFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFD 178 (562)
Q Consensus 100 Grk~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 178 (562)
|+||-++... .+.+++..++.+.. |. +.+...+..++..++.+.......+++.|+.+
T Consensus 98 ~~Rk~~l~~~~~~~~~~~~~l~~v~--~~-------------------~~~~~~~l~iia~v~~~~~~vfyna~LP~la~ 156 (477)
T PF11700_consen 98 GRRKRFLLIFTLLGVLATALLWFVS--PG-------------------QWWLALVLFIIANVGYEASNVFYNAYLPDLAR 156 (477)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhC--cc-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 8777666544 45555666665541 22 23444444445567777778889999999988
Q ss_pred CCCchhh--------------------hhhhhhHHHHHHHHhHHHHHHhhhhhhccc--------ccchhHHHHHHHHHH
Q 035554 179 EEDPKEK--------------------KSKTSFYSYFYIALNLGCLFSETVLVYAEN--------MGYWVLGFWICAGCD 230 (562)
Q Consensus 179 ~~~~~~~--------------------~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~--------~~~~~~~f~i~~~~~ 230 (562)
+++...+ ..|++..+.-+...++|+.+...+.-.+.. ..+.|..+.+.++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww 236 (477)
T PF11700_consen 157 PEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWW 236 (477)
T ss_pred CChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHH
Confidence 7762000 001677777777778888877665543321 123577777777665
Q ss_pred HHHHHH-HHhcCccee-ecCCCC-CchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHH
Q 035554 231 ILAFSS-LLSGTLRYR-HFKPSG-NPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRA 307 (562)
Q Consensus 231 ~~~~~~-~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (562)
++..+- ++..+++.. ...|.. +..+.-.+.+...+|+.+. +++...++-..
T Consensus 237 ~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~--------------------------~~~~~~fLia~ 290 (477)
T PF11700_consen 237 LVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRK--------------------------LRQLFLFLIAY 290 (477)
T ss_pred HHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHh--------------------------ChHHHHHHHHH
Confidence 444443 333333322 111111 2223333333333332110 00111111000
Q ss_pred HhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhh
Q 035554 308 AIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLK 387 (562)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r 387 (562)
.+.. ..+..+......|..+..+++.. .+..+ .+..-+...+...+...+.+|
T Consensus 291 ~l~~-----------------dg~~ti~~~~~i~a~~~lg~s~~---------~l~~~-~l~~~i~a~~Ga~~~g~l~~r 343 (477)
T PF11700_consen 291 FLYS-----------------DGVNTIISFAGIYATEVLGMSTT---------QLIVF-GLVVQIVAIIGALLFGWLQDR 343 (477)
T ss_pred HHHH-----------------HHHHHHHHHHHHHHHHhcCcCHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00001111333444433333211 11111 111111112222222223334
Q ss_pred hccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 035554 388 VAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQ 467 (562)
Q Consensus 388 ~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~ 467 (562)
++. .+.+.+.+.+++..+..+...+.... .. ....+.+...+.-++.|+..+...+..-++..++
T Consensus 344 ~g~------k~~~~l~~~l~~~~~i~~~g~~G~~~------~~---~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~L 408 (477)
T PF11700_consen 344 FGP------KTKRTLLISLILWIIIPLYGLFGFWP------SF---FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRL 408 (477)
T ss_pred hCC------chhHHHHHHHHHHHHHHHHHHHHhhh------cc---cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 432 11133334333332222222221000 00 0113444555667789999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 468 IPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 468 ~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
+|+++.+...|++.+..-..+++||.+.+.+.+.+. +....+..+.++.++++++.+.+
T Consensus 409 iP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 409 IPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998877552 11344555566666666655444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=137.57 Aligned_cols=178 Identities=11% Similarity=-0.008 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCC--------hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT--------NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVT 107 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~ 107 (562)
.++.+++..++..........+++.|+.+ .|.+ ....+...+...++..++.++.|+++|| +|||+++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~ 286 (418)
T TIGR00889 209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLL 286 (418)
T ss_pred CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHH
Confidence 44455555555555555566777888764 4544 3567888999999999999999999999 799999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKS 187 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 187 (562)
+.++..++..++.... ++ ....+.+++..++.|++.+...+....++.|++|+++
T Consensus 287 ~~~~~~v~~~l~~~~~--~~-----------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------ 341 (418)
T TIGR00889 287 SLVAWALRFGFFAYGD--PE-----------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------ 341 (418)
T ss_pred HHHHHHHHHHHHHHcC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 9998888776665531 10 0124567778889999998888998999999999888
Q ss_pred hhhhHHHHH-HHHhHHHHHHhhhhhhcccc------cchhHHHHHHHHHHHHHHHHHHhc
Q 035554 188 KTSFYSYFY-IALNLGCLFSETVLVYAENM------GYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 188 r~~~~~~~~-~~~~lg~~~~~~~~~~l~~~------~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|++++++.+ ....+|..++|.++|++.+. +||+..|.+.+++.+++.++++..
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 56789999999999999876 469999988877766655554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=133.56 Aligned_cols=172 Identities=13% Similarity=-0.043 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..+.+....++....++....++|.|+++ .|++..+.+.....+.++..++.++.|+++|| +|||+.+..+.+...++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~ 298 (406)
T PRK11551 221 ATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILAS 298 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 34444455556667777888889999875 79999999999999999999999999999999 79999988876666655
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+++... + +.+.+.+..++.|++.+...+...++..|.+|+++ |+++.++.
T Consensus 299 ~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 349 (406)
T PRK11551 299 LAALAAA---P--------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAA 349 (406)
T ss_pred HHHHHhc---C--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHH
Confidence 5544433 1 24445566667788777778888999999999888 99999999
Q ss_pred HHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHHHH
Q 035554 196 YIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+...++|..++|.+.|++.+.. +|...+++...+.+++.++.+
T Consensus 350 ~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 350 VAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 456666666655555544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6e-12 Score=132.07 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGL 116 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~ 116 (562)
.+.......+..+++..+..+++.|+.+ .|+ .+.+...+.+.++..++.++.|+++|| +||||.+..+..+..++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~ 293 (399)
T PRK05122 218 VWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGL 293 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 3333333444556677777888888865 455 345666777888889999999999999 799999998888877777
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFY 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (562)
+++... + +.+.+++..++.|++.+...|.......|.+|+++ |+++.++++
T Consensus 294 ~~~~~~---~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~ 344 (399)
T PRK05122 294 LLLWLA---P--------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYS 344 (399)
T ss_pred HHHHHh---c--------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 666554 1 25556677888999998888888888888888777 899999999
Q ss_pred HHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcce
Q 035554 197 IALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRY 244 (562)
Q Consensus 197 ~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~ 244 (562)
...++|..+++.+.|++.+..||+..|++.+++.+++.+..+...++.
T Consensus 345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999888999999988887777766655544443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-12 Score=129.88 Aligned_cols=173 Identities=16% Similarity=0.045 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..+.+....++...+......+++.|+++++|.+..+.+.+.........++.+++|+++|| +|||+++.++.++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~ 278 (375)
T TIGR00899 200 DTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAF 278 (375)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHH
Confidence 34444444445555555566778999999999999999988888777778888999999999 79999998877665555
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
....... + +.+.+++.+++.+++.+...+....+..|..|+ + ++++.+++
T Consensus 279 ~~~~~~~---~--------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~ 328 (375)
T TIGR00899 279 YTGLAAD---N--------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLY 328 (375)
T ss_pred HHHHHHH---H--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHH
Confidence 4443332 1 245566677788888888888888888887764 3 55899999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+...++|..++|.+.|++.+..||+..|++.+++.+++.++...
T Consensus 329 ~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 329 TNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999998889999999888877777665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-11 Score=118.07 Aligned_cols=179 Identities=11% Similarity=0.044 Sum_probs=122.2
Q ss_pred HHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcC
Q 035554 61 FAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLC 140 (562)
Q Consensus 61 y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (562)
-++..-|.+..+..++......+..+++-..|.++|+ +||||...+..+...+...+-..+ |
T Consensus 103 ~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s---p-------------- 164 (528)
T KOG0253|consen 103 ALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS---P-------------- 164 (528)
T ss_pred HHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC---C--------------
Confidence 3455667788889999999999999999999999999 799999988876655444433222 3
Q ss_pred CCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchh
Q 035554 141 DPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWV 220 (562)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~ 220 (562)
++..+.+.|.+.++|.|+ .|...++-.|..|..+ |....-+. ....+|.++...+.-.+..+.|||
T Consensus 165 ------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr 230 (528)
T KOG0253|consen 165 ------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR 230 (528)
T ss_pred ------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 477899999999999999 7999999999988877 55555444 566788888877776667778999
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 221 LGFWICAGCDILAFSSLLSG--TLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 221 ~~f~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
+..........+...+.++. .+|+.. ..+++.+ ....+....+.++.+.|.
T Consensus 231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~--~~G~~~k-AletL~kiArmNg~qlpl 283 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAARFLVWVYESPRFYL--AKGDDYK-ALETLHKIARMNGKQLPL 283 (528)
T ss_pred HHHHHHHhHHHHHHHHHhhcccCcchhh--hcCChHH-HHHHHHHHHHhcCCCCCc
Confidence 87665554333333333332 233322 2233222 233444444555555554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=130.99 Aligned_cols=172 Identities=10% Similarity=0.033 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.++.+.+..++...+++++..++|.|+++++|+|..+.+.+.+.+.++..++.+++|+++|| +|||+.+.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 456667777777778888999999999999999999999999999999999999999999999 7999998877766665
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
...+.... + +...+.+..++.|++.+...+...+...+..|+ + +++..++
T Consensus 284 ~~~~~~~~---~--------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~g~ 333 (394)
T PRK03699 284 LMYLFVNT---D--------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A------SPKLVNF 333 (394)
T ss_pred HHHHHHHc---C--------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C------CHHHHHH
Confidence 55444333 1 133445566677887777778877777776653 2 3456777
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
.+...++|+.++|.+.|++.+..|++..|++..++.+++.+..
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 7788899999999999999998899999887777666665443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-11 Score=128.41 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..+.+.+..++...+++++..++|.|+.+ +|++..+++...+.+.++..++.++.|+++|| +|||+.+.++..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHH
Confidence 456666666777788899999999999986 79999999999999999999999999999999 7999999988877777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~ 193 (562)
+..++... +. +.... ..++.|++.+...|.......+.+++ ++ +++.++
T Consensus 283 ~~~~~~~~---~~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g 332 (393)
T PRK09705 283 GFCGFIWL---PL-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVA 332 (393)
T ss_pred HHHHHHHc---cc-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHH
Confidence 66654432 11 11112 23456788888888877777777753 34 789999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.+...++++.++|.+.|++.+..| |+..|++.+++.+++.+......+
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998765 888888877776666555444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-09 Score=110.21 Aligned_cols=375 Identities=15% Similarity=0.069 Sum_probs=214.2
Q ss_pred HHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----chHH-HHHHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 035554 62 AKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG-----RYLT-CVTFQAFSIIGLLGLSFATQSFLLRPHGCGK 135 (562)
Q Consensus 62 ~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rk~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (562)
+..+++++..-.+.+++...+... ..+..|+.||++ + ||-- +..|.++...+..+++++.-.-. .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~----- 76 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--E----- 76 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--c-----
Confidence 355789999999988888766655 578999999995 6 5544 44666677766666655522111 0
Q ss_pred CCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 136 IGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
+.+.-+.+.........++..+.|+|.+...++..++.+|..|+|+ |.+..++.+...-+|..++..+.+.+.+
T Consensus 77 ~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 77 SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000011111223345566667899999999999999999999988 9999999999999999999999988777
Q ss_pred ccchhHHH----HHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccC
Q 035554 216 MGYWVLGF----WICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANG 291 (562)
Q Consensus 216 ~~~~~~~f----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (562)
.++..-.. ..+.+..++..+..+-..++.+...+..++.+..++ .++++-..
T Consensus 151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~---~a~~~~~~--------------------- 206 (403)
T PF03209_consen 151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFR---EAWRQVWA--------------------- 206 (403)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHH---HHHHHHHh---------------------
Confidence 66543222 222233333333344333333222100000000000 00000000
Q ss_pred cccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCc--ccccCcc---ccccch
Q 035554 292 TRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVS--NFQIPPA---SMTAFD 366 (562)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~ 366 (562)
..+..+++-. ++ .....++.++ ..++ .|+ .|.++.+ .++...
T Consensus 207 -----~~~a~~f~~f---------------------l~-----l~t~a~~~QD-~iLE-Pygg~Vfgmsv~eTT~Lta~~ 253 (403)
T PF03209_consen 207 -----SPQARRFFVF---------------------LF-----LGTLAFFMQD-VILE-PYGGEVFGMSVGETTRLTAFW 253 (403)
T ss_pred -----CCChhHHHHH---------------------HH-----HHHHHHHhhH-HHcC-CchhHHcCCCHHHHHHHHHHH
Confidence 0000011000 00 0012222221 1111 111 2344432 334444
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHH
Q 035554 367 IVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQY 446 (562)
Q Consensus 367 ~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (562)
....++...+...+.. |. .++.+....|..+.++++....... ...+.+.+-+..
T Consensus 254 ~~G~L~G~~~~g~~l~----~~-------~~~~~~a~~G~~~~~~~f~lii~a~--------------~~~~~~~~~~~~ 308 (403)
T PF03209_consen 254 GGGTLLGMLLAGFLLS----RR-------LGKKRTAALGCLLGALAFALIILAG--------------PLGSPWLFRPGV 308 (403)
T ss_pred HHHHHHHHHHHHHHhc----CC-------CCchHHHHHHHHHHHHHHHHHHHHH--------------hcccchHHHHHH
Confidence 5555555555554322 21 1223334455555555554443331 123556777899
Q ss_pred HHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHH
Q 035554 447 VLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFL 526 (562)
Q Consensus 447 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~ 526 (562)
+++|++.++......+...+.++++..|..+|.|...++++..++..+.+.+.+.... +. ++-....|...|.+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~-----~~-~~~~~~aY~~VF~l 382 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA-----LF-GNSPALAYGVVFAL 382 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hc-cCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988775521 11 10012344555666
Q ss_pred HHHHHHHHHHHHH
Q 035554 527 SATVTAMNLGVFV 539 (562)
Q Consensus 527 ~~~~~~~~~~~~~ 539 (562)
-++..++++.+..
T Consensus 383 Ea~ll~~a~~ll~ 395 (403)
T PF03209_consen 383 EAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=138.07 Aligned_cols=134 Identities=12% Similarity=0.044 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHH
Q 035554 76 TFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISI 155 (562)
Q Consensus 76 ~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (562)
......++..++.+++|+++|| +|||+++.++.++.+++.+++.+. ++ ...+++.+
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~---~s--------------------~~~ll~~~ 655 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFG---NS--------------------ESAMIALL 655 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH---cc--------------------HHHHHHHH
Confidence 3455668889999999999999 799999999999888888777665 21 44466667
Q ss_pred HHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 156 YLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 156 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
++.++..++..+...++++|++|++. |++++++.+...++|++++|.+++++.+. +...+|++.+++.+++.+
T Consensus 656 ~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l 728 (742)
T TIGR01299 656 CLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL 728 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 77787777788899999999999988 99999999999999999999999987663 456778777776666655
Q ss_pred HHHhc
Q 035554 236 SLLSG 240 (562)
Q Consensus 236 ~~~~~ 240 (562)
+.++.
T Consensus 729 l~~~L 733 (742)
T TIGR01299 729 LALKL 733 (742)
T ss_pred HHHhC
Confidence 54443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=125.15 Aligned_cols=174 Identities=26% Similarity=0.288 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL-TCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~-~i~~~~~~~~ 113 (562)
|..+...+..++..........+.+.|.++.+|.+..+.+.......++..++.++.|+++|| +|||+ .+..+..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHH
Confidence 444555666677778888888899999998889999999999999999999999999999999 79999 9999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+... + +.+.+++..++.+++.+...+...++..|..|+++ |++.++
T Consensus 254 i~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 304 (352)
T cd06174 254 LGLLLLALA---P--------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASG 304 (352)
T ss_pred HHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHH
Confidence 888877664 1 26677888999999999999999999999999877 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++...++|..++|.+.+++.+..+|+..|++..++.+++.+...
T Consensus 305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999888999999988887777666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=131.48 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=115.8
Q ss_pred HHHHHHHH-HHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVN-QGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~-~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
..+.+... .++....+|++..++|.|+++++|++..+.+...+...++..++.++.|+++|| +|||+.+.++.++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~ 321 (432)
T PRK10406 243 RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAAL 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 33443333 344578899999999999999999999999988888888888999999999999 7999988876654433
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
......... +. ..+....+....+..+..+...+....+..|.+|++. |+++.++
T Consensus 322 ~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~ 376 (432)
T PRK10406 322 FTVPILSAL--QN-----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGL 376 (432)
T ss_pred HHHHHHHHH--Hc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhH
Confidence 332221110 00 0012222222222223333344566788899999999 9999999
Q ss_pred HHHHHh-HHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 195 FYIALN-LGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 195 ~~~~~~-lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.+...+ +++..+|.+.+++.....|...+++.++..+++.+..++
T Consensus 377 ~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 377 SYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 766555 445568888887654334666666655555555554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=129.47 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChh---hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNA---EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+...++.......+.++++.|+.+..+.... ..+.+.++..++..++.+..|+++|| +|||+++..+..+..++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~ 303 (408)
T PRK09874 225 FVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLI 303 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHH
Confidence 3333444455556677788888775543221 24555666778888899999999999 7999999988887776666
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
.+... + +.+.+++.+++.|++.+...|...++..+..|+++ |++.+++++.
T Consensus 304 ~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (408)
T PRK09874 304 PMSFV---Q--------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS 354 (408)
T ss_pred HHHHh---c--------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence 55443 1 25667788888999999999999999988888777 8999999999
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
..++|..++|.++|++.+..||+..|++.+++.+++.+..+..
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998999999999888777776655443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=132.22 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--cchHHHH-HHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL--GRYLTCV-TFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grk~~i~-~~~~~ 111 (562)
+.+|...+..++.....+++..++|.|++++.|++..+++.+...+.++..++.+++|+++|| + |||+... ....+
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l 331 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 331 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHH
Confidence 567778888888888889999999999999999999999999888999999999999999999 6 4554332 22233
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++.+. +. .+....+++.++.|.+.....+....+..|.+|+++ |+++
T Consensus 332 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~ 384 (452)
T PRK11273 332 VTIATIVYWLN---PA------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 384 (452)
T ss_pred HHHHHHHHHHh---cc------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhH
Confidence 33333332221 11 113333444445555433323333456678898888 9999
Q ss_pred HHHHHHHHhHHHHH-HhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLF-SETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~~~~~~~lg~~~-~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.++++...++|+.+ +|.+.|++.+..||+..|++.+++.+++.+...
T Consensus 385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 385 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999988998765 799999999988999999888876666655544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=115.16 Aligned_cols=181 Identities=19% Similarity=0.151 Sum_probs=146.4
Q ss_pred CCCCccccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 035554 23 GKPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY 102 (562)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk 102 (562)
+.|...+.+.....+|.+.+..++...+.+=..+.-+.++++.+|+|+..++.+.+.....+....++.|.++|| .|++
T Consensus 252 e~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n 330 (459)
T KOG4686|consen 252 EEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFN 330 (459)
T ss_pred CCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcce
Confidence 456666667777899999999999999888888888999999999999999999999999999999999999999 6998
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC
Q 035554 103 LTCVTFQA-FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED 181 (562)
Q Consensus 103 ~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 181 (562)
-..+.+.. ....+...+.++ .+--+.++.+.|+......-+..+.++-..|+++
T Consensus 331 ~~wv~~a~~~tl~~H~~l~Ft-------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q 385 (459)
T KOG4686|consen 331 LWWVASACILTLLGHSGLFFT-------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ 385 (459)
T ss_pred ehhHHHHHHHHHHHhhhHHhh-------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH
Confidence 87775544 556666666664 3335667778888888877778889999999999
Q ss_pred chhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccc---hhHHHHHHHHHHHHHHH
Q 035554 182 PKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGY---WVLGFWICAGCDILAFS 235 (562)
Q Consensus 182 ~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~---~~~~f~i~~~~~~~~~~ 235 (562)
.|++++..+...|+|-.+.|++.|.+.+.-| |--.|.+....+++..+
T Consensus 386 ------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~sv 436 (459)
T KOG4686|consen 386 ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSV 436 (459)
T ss_pred ------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987543 44455555544444333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=124.69 Aligned_cols=177 Identities=18% Similarity=-0.007 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV-TFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~-~~~~~~~ 113 (562)
|..+...+..++.....+.+..+++.|+++.+|.+..+.+++.+...++..++.+++|+++|| +|||+... .......
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHH
Confidence 567778888888889999999999999999999999999999999999999999999999999 79986211 1111111
Q ss_pred HHH---HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 114 IGL---LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 114 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
++. .+..+.. .. ....+.......+.+.+.+ ..+...++..|.+|+++ |++
T Consensus 294 ~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~ 347 (399)
T TIGR00893 294 IAGLVLSLLMFAT--NY-----------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGL 347 (399)
T ss_pred HHHHHHHHHHHHh--cc-----------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHH
Confidence 111 1111110 00 0112333333333344444 78899999999999888 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~ 238 (562)
..++.+...++|..++|.+.+++.+..| |+..|++.+++.+++.++.+
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888 99999887777666655443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=129.47 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--cchHHH-HHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL--GRYLTC-VTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grk~~i-~~~~~~ 111 (562)
+.++.+.+..++....++++..++|.|+++++|++..+++...+.+.++..++.+++|+++|| + ++|+.. ....+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~r~~~~~~~~~~ 321 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDK-LFNGNRGPMNLIFAAG 321 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCccHHHHHHHHH
Confidence 456777777777778888888999999988899999999999999999999999999999999 5 223332 222211
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..+....+... +. .+.....+..++.|++.............|.+|+++ |+++
T Consensus 322 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 374 (434)
T PRK11663 322 ILLSVGSLWLM---PF------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAA 374 (434)
T ss_pred HHHHHHHHHHc---cc------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhH
Confidence 12222111111 11 012223333333444332222233456688888777 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+..+
T Consensus 375 ~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 375 TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999988887766655444
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-12 Score=131.85 Aligned_cols=172 Identities=15% Similarity=0.057 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh---CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVL---RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
++.+.+..++....+......++.|+.+.+ +.+..+.|.+.+...++..++.+++|+++|| +|||+.+..+.++..
T Consensus 225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~ 303 (420)
T PRK09528 225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMA 303 (420)
T ss_pred eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHH
Confidence 333333344444445555556778877654 5666788999999999999999999999999 799999999888888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.++ + +.+.+++.+++.+++.+...+....++.|.+|++. |++..+
T Consensus 304 ~~~~l~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~ 354 (420)
T PRK09528 304 VRIIGSGFA---T--------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYL 354 (420)
T ss_pred HHHHHHHhc---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeee
Confidence 887777665 1 25667778888888888777777888899888777 677766
Q ss_pred H-HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 194 Y-FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 194 ~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
. ++...++|.+++|.+.|++.+..||+..|.+.+++.++..++.+
T Consensus 355 ~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 355 VGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 5 67788999999999999999988999999987776665554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-11 Score=125.05 Aligned_cols=169 Identities=8% Similarity=-0.106 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++...+.+....+.+.|+++ +|.+..+.|.+.+...++..++.++.|++.|| +|+|+.+.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHH
Confidence 667777777888888888889999999975 89999999999999999999999999999999 7999999999999998
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+++++. + +.+.+++...+.|+..+...+....++.+. |+++ |+++.++
T Consensus 283 ~~~~~~~~---~--------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~ 332 (382)
T TIGR00902 283 RWAIIGAI---E--------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQAL 332 (382)
T ss_pred HHHHHHhH---h--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHH
Confidence 88887765 2 367788889999999999999999999987 7777 7888888
Q ss_pred HH-HHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 195 FY-IALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 195 ~~-~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
++ ....+|.+++|.++|++.+..|+ ..|++.+++.+++.++
T Consensus 333 ~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 333 YNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 76 46689999999999999998886 5677666665555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-11 Score=125.44 Aligned_cols=171 Identities=15% Similarity=0.058 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..+...+..++...++..+..+.+.|+++ .|++ +.+.....+.++..++.++.|++.|| +|+||.+..+..+..++
T Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~ 292 (392)
T PRK12382 217 LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVG 292 (392)
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHH
Confidence 33333333344556666777788888865 4554 35566667788888999999999999 79999999998888888
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+++.+. + +.+.++++.++.|++.+...|...+...|.+|+++ |++..+++
T Consensus 293 ~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 343 (392)
T PRK12382 293 LLLLWLA---P--------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGY 343 (392)
T ss_pred HHHHHHc---c--------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHH
Confidence 7766553 2 25566778888899998888888888899888877 99999999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+...++|..++|.+.+++.+..||+..|.+.+++.+++.++.+.
T Consensus 344 ~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 344 AAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999899999999888877776665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=126.65 Aligned_cols=160 Identities=14% Similarity=0.054 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGL 116 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~ 116 (562)
+..+.....+.+....+...++|.|+++++|++..+.+.+.+...++..++.++.|+++|| +|||+.+.++..+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~ 318 (405)
T TIGR00891 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLI 318 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHH
Confidence 3444444555566667777889999999999999999999999999999999999999999 799999988876553332
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFY 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (562)
...... . .+.+.+.++.++.++..+...+..++++.|.+|+++ |++.+++.+
T Consensus 319 ~~~~~~---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~ 370 (405)
T TIGR00891 319 IPVFAI---G-------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTY 370 (405)
T ss_pred HHHHHh---C-------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHH
Confidence 222111 1 124455566566666666677888899999999888 999999999
Q ss_pred HHHhHHHHHHhhhhhhcccccc-hhHHHHH
Q 035554 197 IALNLGCLFSETVLVYAENMGY-WVLGFWI 225 (562)
Q Consensus 197 ~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i 225 (562)
...++|+.++|.+.|++.+..| |+..+..
T Consensus 371 ~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 371 QLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999887 7766654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=121.97 Aligned_cols=174 Identities=11% Similarity=-0.072 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
.++......++.....++...+++.|+++++|.|..+.+++.+...++..++.++.|+++|| +|||+.+ .+..+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~ 283 (390)
T PRK03545 206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVC 283 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHH
Confidence 44555555566666777777888899988899999999999999999999999999999999 7988654 444444444
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
..+.... + .+.+.+++..++.|++.+...+...+.+.+..| ++ |+++.+++
T Consensus 284 ~~~l~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~ 334 (390)
T PRK03545 284 LLLLLPA---A-------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALF 334 (390)
T ss_pred HHHHHHH---h-------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHH
Confidence 3332221 1 125566677778888888777777788877765 45 78899999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+...++|..+||.++|++.+..|++..|++.+.+.+++.+.....
T Consensus 335 ~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 335 SGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888777776665443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=115.35 Aligned_cols=137 Identities=14% Similarity=0.139 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 035554 54 VEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGC 133 (562)
Q Consensus 54 ~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (562)
-..-+..+++.+.++..++..++.++|..-..+.++++|++.||.+|-|..-++-+.+..+|.+..+...-
T Consensus 62 ~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi--------- 132 (459)
T KOG4686|consen 62 APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI--------- 132 (459)
T ss_pred CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH---------
Confidence 44556778888888888889999999999999999999999999999877666666666667766544311
Q ss_pred CCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhc
Q 035554 134 GKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l 213 (562)
...+|.+..+|+++|+|.-....+.+.+...+|..++ ....++++.....+|...-..+.+++
T Consensus 133 -----------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 133 -----------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred -----------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHH
Confidence 1359999999999999999989999999999999988 89999999999999988777777777
Q ss_pred ccc
Q 035554 214 ENM 216 (562)
Q Consensus 214 ~~~ 216 (562)
.++
T Consensus 196 y~~ 198 (459)
T KOG4686|consen 196 YDT 198 (459)
T ss_pred HHH
Confidence 654
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-11 Score=124.11 Aligned_cols=189 Identities=19% Similarity=0.163 Sum_probs=141.2
Q ss_pred CCCccccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-
Q 035554 24 KPAIKDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKS-VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGR- 101 (562)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr- 101 (562)
++.....+.+||.+++..+..++..+.++...+.+-.|+++ +.+.+.+..|++++...++..++.+..|+-+.| .|+
T Consensus 23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~ 101 (488)
T KOG2325|consen 23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSV 101 (488)
T ss_pred cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCc
Confidence 34445567899999999999999999999998889999885 467788889999999999999999999999999 575
Q ss_pred hHHHHHHHHHHHHHHHHH-HhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCC
Q 035554 102 YLTCVTFQAFSIIGLLGL-SFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEE 180 (562)
Q Consensus 102 k~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 180 (562)
|+-++.+.++.++|.++. ++. ..|+ ...++++++|++.|+|.|. ....-+++++.-..+
T Consensus 102 k~Pli~s~ii~~~g~llY~~l~-~~~~------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~ 161 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNLLYLALA-YVPN------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVE 161 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHH-hccc------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCcc
Confidence 888888999999999888 443 2232 2588999999999999876 467788999876666
Q ss_pred CchhhhhhhhhHHHHHHHHhHHHHHHhhhh----hhcccc---------cchhHHHHHHHHHHHHHHHHHHh
Q 035554 181 DPKEKKSKTSFYSYFYIALNLGCLFSETVL----VYAENM---------GYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 181 ~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~----~~l~~~---------~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+ |.++++....+..+|..+||.+. +...+. .-|..+-|+.++.-++..+.+..
T Consensus 162 d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~ 227 (488)
T KOG2325|consen 162 D------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF 227 (488)
T ss_pred c------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence 6 77887776665555555555544 333221 12445555555555444444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-11 Score=126.61 Aligned_cols=158 Identities=17% Similarity=0.132 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.........++....++++..++|.|+++.+|++..+.++....+.++..++.+++|+++|| +||||++..+.++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~ 316 (434)
T PRK15075 238 RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAIL 316 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 333333444455667788899999999999899999999988888889999999999999999 7999998876554332
Q ss_pred HHH-HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLL-GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
... ...... +. .......+...+.+++.+...+...++..|.+|++. |+++.+
T Consensus 317 ~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g 370 (434)
T PRK15075 317 TAYPALSWLV--AA------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFS 370 (434)
T ss_pred HHHHHHHHHH--cC------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchhee
Confidence 221 111110 00 112233333444556666666777788999999888 889999
Q ss_pred HHHHHH-hHHHHHHhhhhhhcccccch
Q 035554 194 YFYIAL-NLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 194 ~~~~~~-~lg~~~~~~~~~~l~~~~~~ 219 (562)
+.+... .+++.++|.+.+++.+..|+
T Consensus 371 ~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 371 LAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 854444 45678899999999887775
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.9e-11 Score=125.41 Aligned_cols=158 Identities=14% Similarity=-0.041 Sum_probs=129.5
Q ss_pred HHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 035554 51 FAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRP 130 (562)
Q Consensus 51 ~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
..++..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|| .++++.+..+.++.+++.+++.+. +
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~---~---- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLM---P---- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHcc---c----
Confidence 45677788999998899999999999999999999999999999999 688888888887777777665543 2
Q ss_pred CCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhh
Q 035554 131 HGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVL 210 (562)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~ 210 (562)
+.+...++.++.|++.+...+...+++.|.+|++. |+++.++++...++|..++|.+.
T Consensus 311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHH
Confidence 24556677777888888777777888899998877 89999999999999999999999
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 211 VYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 211 ~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
|++.+..|++..+++.+++..+..++..
T Consensus 369 G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 396 (417)
T PRK10489 369 GGLGAMMTPVASASASGFGLLIIGVLLL 396 (417)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 9999988988888776665554444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-11 Score=122.20 Aligned_cols=161 Identities=12% Similarity=0.136 Sum_probs=125.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhh
Q 035554 44 QGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFAT 123 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~ 123 (562)
.+.....+.....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++|| +|+|+++..+.++..++.++.. .
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~- 284 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h-
Confidence 333344455556678888875 69999999999999999999999999999999 7999999888777776655432 1
Q ss_pred cccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHH
Q 035554 124 QSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGC 203 (562)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~ 203 (562)
.......+.+.+++.+...|...+.+.|..|+++ ++...+.++...++|.
T Consensus 285 ------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 1123345566677777778888888899887665 6677778888889999
Q ss_pred HHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 204 LFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++|.++|++.+.++|++.|.+.+.+.++..+.++
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999988777766655444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=107.48 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHH
Q 035554 77 FSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIY 156 (562)
Q Consensus 77 ~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (562)
.+.+.++..++.++.|+++|| +|||+.+..+..+..++.+.+... + +.+.+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~ 59 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALS---S--------------------NITVLIIARF 59 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHh---c--------------------cHHHHHHHHH
Confidence 345667888999999999999 799999999988888887776654 1 3667888899
Q ss_pred HHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 157 LFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 157 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
+.|++.+...+...++..|.+|+++ |++..++.+...++|..++|.+.+++.+..+|+..|++..+..+++.+.
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888 9999999999999999999999999988889999998877766655554
Q ss_pred HHh
Q 035554 237 LLS 239 (562)
Q Consensus 237 ~~~ 239 (562)
...
T Consensus 134 ~~~ 136 (141)
T TIGR00880 134 LAF 136 (141)
T ss_pred Hhh
Confidence 443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=121.69 Aligned_cols=176 Identities=15% Similarity=0.060 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV-TFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~-~~~~~~~ 113 (562)
|.++...+..++...++++...++|.|+++ +|++..+.+.+.+...++..++.++.|+++|| +|||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHH
Confidence 566777777788888999999999999864 89999999999999999999999999999999 79988764 3333333
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+... +. ....+.+..++..++.|++.+...+ ..+...|.. +++ |+++++
T Consensus 300 ~~~~~l~~~---~~---------------~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~------~g~~~g 353 (402)
T TIGR00897 300 IFTLALYYI---PQ---------------HFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKH------KGAAMS 353 (402)
T ss_pred HHHHHHHHH---HH---------------ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cch------hHHHHH
Confidence 333222222 10 0011345556667777877776544 345566654 345 899999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++...++|..++|.+++++.+..||...|++.+++.+++.++..
T Consensus 354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999988877766655544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=126.45 Aligned_cols=151 Identities=13% Similarity=0.004 Sum_probs=115.9
Q ss_pred HhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 52 AGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 52 ~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
+.+..++|.|+++++|++..+.+.+.+.+.++..++.+++|+++|| +|||+++..+.++..++.++.... +.
T Consensus 292 ~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~---~~---- 363 (496)
T PRK03893 292 WPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAI---GG---- 363 (496)
T ss_pred chHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhc---cc----
Confidence 3466789999998999999999999999999999999999999999 799999888876665554433322 10
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
...+...+..++.+.......+..++++.|.+|+++ |++.+++++...++|+.++|.++|
T Consensus 364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHH
Confidence 123333344444333333345677788899998877 899999999999999999999999
Q ss_pred hcccccchhHHHHHHHHHH
Q 035554 212 YAENMGYWVLGFWICAGCD 230 (562)
Q Consensus 212 ~l~~~~~~~~~f~i~~~~~ 230 (562)
++.+..||+..+...+.+.
T Consensus 424 ~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 424 LIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHhccCChHHHHHHHHHHH
Confidence 9999889988776554433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-09 Score=110.25 Aligned_cols=345 Identities=14% Similarity=0.077 Sum_probs=188.6
Q ss_pred hhHHHHHHHHHHhhCC---Ch----hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHHHHHHHHHhhhc
Q 035554 53 GVEVNMVLFAKSVLRQ---TN----AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL-TCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 53 ~~~~~~~~y~~~~lg~---s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~-~i~~~~~~~~~~~~~~~~~~~ 124 (562)
.+.+.+|+|+++..+- +. +-.+...++..+...+..|+-|.++|. .|+|| .+.+..++..+..+.+.+.
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i-- 109 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFI-- 109 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHh--
Confidence 3556789999987665 33 335666777788888888999999999 68555 5556666777777777665
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
|. ....+..++...+..++.........+++.|..++++ .++..+.-+...++|+.
T Consensus 110 -~~-----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~ 165 (438)
T COG2270 110 -PP-----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSV 165 (438)
T ss_pred -CC-----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccch
Confidence 22 1235556666777888888889999999999988776 44555554455566665
Q ss_pred HHhhhhhhc---c---------------cccchhHHHHHHHHHHHHHHHHHHhcCcceeec-CCCCCchhHHHHHHHHHH
Q 035554 205 FSETVLVYA---E---------------NMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF-KPSGNPLSRFSQVIVASL 265 (562)
Q Consensus 205 ~~~~~~~~l---~---------------~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (562)
+.-+++... . +...-|..+.++++..++..+=+++..++.+.. .|..+....-.+.++..+
T Consensus 166 i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~ 245 (438)
T COG2270 166 ILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTF 245 (438)
T ss_pred HHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 554433111 1 112346666666665554444444333332221 122222233233333333
Q ss_pred hhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHh
Q 035554 266 RKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQG 345 (562)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 345 (562)
|+.+. +++...|+-...+.. ..+.....+-..|-...
T Consensus 246 k~i~~--------------------------~~~i~~FLiA~~~~~-----------------DGv~til~~~~~fg~~~ 282 (438)
T COG2270 246 KEIRG--------------------------RKNLVLFLIARFFYI-----------------DGVNTILAMGGVFGAAD 282 (438)
T ss_pred HHHhc--------------------------ccchHHHHHHHHHHH-----------------hhHHHHHHHHHHHHHHH
Confidence 32100 111112221110000 00000000111111111
Q ss_pred hhccCCCcccccCccccccchhHHHHHHHHHHHHHHHH-hhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035554 346 AAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVP-LYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRL 424 (562)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~ 424 (562)
.+.+ ...+.. .+..+........++.+ +-+|++. ...+..++++..+..+...+.+
T Consensus 283 ~gls---------~~~lll--~g~~~~vvA~lg~ii~g~Ld~rfg~--------k~vl~~~lvi~~~~~~~~~~~~---- 339 (438)
T COG2270 283 LGLS---------STELLL--IGIALSVVAALGAIIAGFLDERFGS--------KPVLMIGLVILSIAALYLIFLE---- 339 (438)
T ss_pred cCcc---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCC--------ceeehHHHHHHHHHHHHHHHcc----
Confidence 1111 111111 11111111122222223 3334433 2345566665555544443331
Q ss_pred hhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 035554 425 KYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTT 503 (562)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~ 503 (562)
.+.. ..+.-++.|...+......=++..+.+|++..+...|++++....++++||.+++.+..++.
T Consensus 340 ----------~~~~---f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 340 ----------GELD---FWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ----------ccHH---HHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 1122 23444777888888888888999999999999999999999999999999999998887663
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=123.16 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHH-HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFS-RWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
.+.+....++...+.+....+.+.|+.+++|++..+.+.+.. ...++..++.+++|+++|| +|+||.+.++.++.+++
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 444444445666666677778888988889999999999875 5567999999999999999 79999888776655554
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+.+......+ .+...+.+..++..+..|...++..++..++.+++. +++.+++.
T Consensus 303 ~l~~~~l~~~~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~ 357 (491)
T PRK11010 303 NAGYWLLSITD-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALL 357 (491)
T ss_pred HHHHHHHHhcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHH
Confidence 43332211000 123334444555555555555677888888888877 77889999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
+...++|..+++.+.|++.+..||+..|.+..++.+.+.+.....+
T Consensus 358 ~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 358 SALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888999999989999999988888877766655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=115.29 Aligned_cols=164 Identities=9% Similarity=-0.011 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSV--LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
|..++..+..++.-.+-.++..|++.|+++. +|++..+.+...+.+..+..++.+++++++|| +|+||++.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHH
Confidence 4566666666665556778889999999854 79999999999999999999999999999999 79999998888777
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
+++.++.... +. . ....+.++.|++.+...|...+...+.+|++. +.+.
T Consensus 219 ~~~~~l~~~~---~~--------------------~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~as 267 (310)
T TIGR01272 219 VLLSIGAALT---HG--------------------Y-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGS 267 (310)
T ss_pred HHHHHHHHHc---CC--------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhH
Confidence 7766544432 11 1 12335557899999999999998888776533 2333
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDI 231 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~ 231 (562)
++. ....+|+++.|.+.|.+.+..|.+.+|++..++.+
T Consensus 268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~ 305 (310)
T TIGR01272 268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL 305 (310)
T ss_pred HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 443 46679999999999999998898888886665543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.5e-11 Score=124.70 Aligned_cols=178 Identities=14% Similarity=0.078 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+|.+.+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++|| +|+++....+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHH
Confidence 456777777777778888999999999999899999999999999999999999999999999 6754433333322221
Q ss_pred ---HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 115 ---GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+.+.+... +. .+.+...+..+..|++.............|.+|+++ |+++
T Consensus 330 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 382 (438)
T TIGR00712 330 VTIAVIVYWMN---PA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 382 (438)
T ss_pred HHHHHHHHHhc---CC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeee
Confidence 11111111 10 012223333444454433322333345678888877 8999
Q ss_pred HHHHHHHHhHHH-HHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 192 YSYFYIALNLGC-LFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 192 ~~~~~~~~~lg~-~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.++++...++|+ +++|.+.|.+.+..||...|++..+..+++.+..+..
T Consensus 383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 999998888875 6899999999998899999988777666665554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=118.04 Aligned_cols=185 Identities=11% Similarity=0.006 Sum_probs=145.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|..|.+.+..+.+.-++.++..++|.|+++++|.++.++|.....+.+.+.+..+++|+|||| +|.+|+..+....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999 799999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++..+..+. +.. .........++...+.+++..|.-......++...+|+ + -+...+
T Consensus 296 ~~~~~l~~~---~~~-------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~------~G~v~G 352 (417)
T COG2223 296 LAAALLSLF---LTG-------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-E------TGAVTG 352 (417)
T ss_pred HHHHHHHcc---ccc-------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-h------hhHHHH
Confidence 888777664 210 00012344444444445555555555667777777754 3 478888
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.....++|+..-|...+...+..| +...|++...+.+++.+..+....
T Consensus 353 ~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 353 IVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999888888888777666 888999888887777776554433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-10 Score=118.93 Aligned_cols=186 Identities=14% Similarity=0.026 Sum_probs=154.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch--HHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY--LTCVTFQA 110 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk--~~i~~~~~ 110 (562)
+.|.....+++.++.+-+...+......|.++++|++..+...+..+..+...+++++.|++.|| +|.| +++.++++
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHH
Confidence 34788888999999999999999999999999999999999999999999999999999999999 7999 89888887
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
++.+..+.-.+. ..+. .....+.+.+++.-++.|+..|...+..-++.+++.|+++ .+.
T Consensus 358 ~~~~i~~~g~~G-~~~~--------------~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~e 416 (477)
T PF11700_consen 358 LWIIIPLYGLFG-FWPS--------------FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAE 416 (477)
T ss_pred HHHHHHHHHHHH-hhhc--------------ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhH
Confidence 764433332221 0011 0011246678888889999999999999999999999988 899
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.|+++....-..+.+||++.+.+.+..| .|.++....++.+++++++...
T Consensus 417 fFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 417 FFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988765 8889888888888887776554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-10 Score=114.09 Aligned_cols=177 Identities=18% Similarity=0.115 Sum_probs=145.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.++..+...++...+.|...+++.+|+++..|+|....+++...|.++..++.+++|+++|| +.|+++.....+.++
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 578888889999999999999999999999999999999999999999999999999999999 888888888888877
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+.+.+.. . +.+...+..++.|++..........-.++.. +|+ +..+.++
T Consensus 289 ~~l~l~~~~---~-------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl 339 (394)
T COG2814 289 ALLALTFTG---A-------------------SPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSL 339 (394)
T ss_pred HHHHHHHhc---c-------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHH
Confidence 777766652 1 3455556666677776665555555555522 344 6799999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+....|+|-.+|..++|.+.+.+|+....++.++..+++.++.+...+
T Consensus 340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988888777655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.5e-11 Score=121.42 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVE-VNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~-~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|.++.+....++....+++.. .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.|| +|||+.+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 456666666777777777776 778888888899999999999999999999999999999999 799999988877766
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.++..+. + . +.+.+++..++.|++.+...+...+++.|.+|+++ |++..+
T Consensus 289 ~~~~~~~~~---~------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~ 340 (365)
T TIGR00900 289 LAILVVGLT---P------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFG 340 (365)
T ss_pred HHHHHHHhh---c------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence 666655543 1 0 25667778888999999999999999999999877 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhccccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMG 217 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~ 217 (562)
+++...++|..++|.++|++.+..
T Consensus 341 ~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 341 AQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999987754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.9e-10 Score=119.69 Aligned_cols=158 Identities=10% Similarity=-0.056 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+...+...++...++.......|.|++..+|.+..+.+++.....++..++.++.|+++|| +|||+++..+.++..+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~ 339 (471)
T PRK10504 261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLAL 339 (471)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 456666777777777777777788889988899999999999888888888888999999999 7999999999887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++.+. +. ....+.+.+..++.|++.+...+....+..+.+|+++ ++.++++
T Consensus 340 ~~~~~~~~---~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 393 (471)
T PRK10504 340 VSLLFMLV---AL-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSL 393 (471)
T ss_pred HHHHHHhc---cc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHH
Confidence 76665543 11 0123334455667788888888888899999998877 8999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccch
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
++...++|..+|+.+++.+.+..++
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999888665554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-10 Score=120.04 Aligned_cols=171 Identities=14% Similarity=0.012 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHH--HH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY-LGRYLTCVTFQ--AF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grk~~i~~~~--~~ 111 (562)
|.++......++..++++....+++.|+++ +|++..+++.+.+...++..++.+++|+++||. +++|+...++. ++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 456777777778888888888999999875 799999999999999999999999999999973 23343333332 22
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
..++.+++... + +.+.+++.+++.|++.+...++..+++.|.+|+++ +++.
T Consensus 320 ~~l~~ll~~~~---~--------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~ 370 (455)
T TIGR00892 320 NGLTHLLCALA---G--------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSA 370 (455)
T ss_pred HHHHHHHHHHh---c--------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhH
Confidence 33333333332 1 36667788889999999999999999999998877 8999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHH
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFS 235 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~ 235 (562)
+++++...++|..++|.++|++.+.. +|+..|++.+++.+++.+
T Consensus 371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999998876 599999988876665554
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-10 Score=118.07 Aligned_cols=175 Identities=14% Similarity=-0.025 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMG-SLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
..+..+...++...+......+.+.|+++ .|++..+.|++...... ...++.+++|+++|| +|+||.+..+.++.++
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 45555556666767777777788889876 79999999998887754 666778999999999 7999999887766533
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~ 193 (562)
..+....... .. ........+....+.+++.+...+...+...+..++ +. +++.++
T Consensus 287 ~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~ 343 (390)
T TIGR02718 287 LALLWFAQAA-FW----------------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVT 343 (390)
T ss_pred HHHHHHHHHH-cc----------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHH
Confidence 3332221111 00 001133334444455666777777777887777665 55 789999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
+++...++|..++|.++|++.+..||+..|++.+++.+++.+
T Consensus 344 ~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 344 AVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999887776655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=117.45 Aligned_cols=178 Identities=16% Similarity=-0.002 Sum_probs=124.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH--------
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTC-------- 105 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i-------- 105 (562)
++.+|...+..++....++.+..++|.|+++.+|++..+.++..+...++..++.+++|+++|| +++|+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHH
Confidence 4678888899999999999999999999999999999999999999999999999999999999 5654321
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
..+......+..++... ... ......++...+.+.+.+...+.......|..|. .
T Consensus 339 ~~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~---- 393 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALP-YLS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F---- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHH-HcC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H----
Confidence 11111111111111111 000 1133334444455555555555555555555442 4
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhcccc---cchhHHHHHHHHHHHHHHHHHHh
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENM---GYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
++...++.+...++|+.++|.+.|++.+. .+|...|.+.++..+++.++...
T Consensus 394 --~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 --LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 78999999999999999999999998764 34888898888777776665443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=103.65 Aligned_cols=184 Identities=10% Similarity=-0.042 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAF---AGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~---~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
++.|.++++..+.+++. +.-......|.++.+| +...+-|...+|.+.+....+.+-|+.|+ +|-|...+++..+
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~l 118 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVL 118 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHH
Confidence 34444444444444333 2222334567777778 77778899999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHH--HHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETA--IFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 189 (562)
..+|..+=.++ +.|.+. +.++ +.+.+-.+.+..+-.+...-+-+..-||++++ |.
T Consensus 119 n~iGa~Ir~is-s~p~v~----------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra 175 (480)
T KOG2563|consen 119 NGIGAWIRLIS-SLPFVP----------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RA 175 (480)
T ss_pred HHHHHHHhhhc-cCcccc----------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hh
Confidence 99998877665 334311 2344 66677777777776665555566778899999 88
Q ss_pred hhHHHHHHHHhHHHHHHhhhhhhcccc------cchhH--HHHHHHHHHHHHHHHHHhcCcc
Q 035554 190 SFYSYFYIALNLGCLFSETVLVYAENM------GYWVL--GFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 190 ~~~~~~~~~~~lg~~~~~~~~~~l~~~------~~~~~--~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
.+-++-..++.+|.+++.++...+..+ .+|.. .|+...++.++.+++..+.+++
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~ 237 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTK 237 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 887776667677777776665555443 24544 3444444443333333344433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-10 Score=118.75 Aligned_cols=181 Identities=12% Similarity=-0.038 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+...+..+........+..+.+.+ .+++|++..+.++......++..++.+++|+++|| +|||+.+.+++++..++.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~ 364 (481)
T TIGR00879 287 LGVVLQWFQQFTGINAIMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLF 364 (481)
T ss_pred HHHHHHHHHHHhCCeehHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHH
Confidence 333333333334444444444444 45689999888888889999999999999999999 7999999999888777776
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCC-CchHHHHHHHHH-HHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHS-PAETAIFYISIY-LFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
++.+...... ++.+ ......+....+ ..+.+.+ ..+....+..|.+|+++ |+++.++.
T Consensus 365 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~------~~~~~~~~ 424 (481)
T TIGR00879 365 VLGILGASFV-------------TGSSKSSGNVAIVFILLFIAFFAMG-WGPVPWVIVSEIFPLSL------RPKGISIA 424 (481)
T ss_pred HHHHHhhccc-------------CCcccchhHHHHHHHHHHHHHHHcc-ccCeehhhhhccCChHH------HHHHHHHH
Confidence 6653211010 0000 001222222222 2223322 34666777799999887 89999999
Q ss_pred HHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 196 YIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+...++|++++|.+.+++.+..+|++.|++.+++.+++.++.+..
T Consensus 425 ~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 425 VAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhee
Confidence 999999999999999999888899999988777766666554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=113.72 Aligned_cols=166 Identities=8% Similarity=-0.070 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.+.+..++...++......++.|++ +.|.+..+.|.+.+...++..+..++.|++.|| +|+|+.+..+.++..+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 56676677677777777777788899996 489999999999998889999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++... + +.+.+++..++.|++.+...+....+..+. ++++ +++..++
T Consensus 283 ~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~ 332 (382)
T PRK11128 283 RWGLMGST---T--------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQAL 332 (382)
T ss_pred HHHHHHhh---h--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHH
Confidence 77666554 1 366777888889999888888888877775 4444 5677887
Q ss_pred HH-HHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 035554 195 FY-IALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 195 ~~-~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~ 233 (562)
++ ....+|..++|.++|++.+..|+. .|+..+++.+++
T Consensus 333 ~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 333 YSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 65 555778899999999999988874 555555544444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=122.87 Aligned_cols=161 Identities=17% Similarity=0.063 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.+++..++...+++......+.|.+..++ +..+.+.+.+...++..++.++.|+++|| +|||+++.++.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 566777777778888877776666666666666 55667777788889999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCc-hhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP-KEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~ 193 (562)
+.+.+.+. +. +.+.+++..++.+++.+...+...++++|..|.++- ..++.++..++
T Consensus 300 ~~~~~~~~---~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 357 (437)
T TIGR00792 300 GYLIFFFA---GS-------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYS 357 (437)
T ss_pred HHHHHHHc---ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHH
Confidence 77766553 11 245566677788999999899999999998775431 11222688999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccch
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
+++...++|..+++.+.|++.+..||
T Consensus 358 ~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 358 VRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999988766555
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=118.25 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--HH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA--FS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~--~~ 112 (562)
|.++.+.+..++.....+++..+++.|+++++|++..+.+...+.+.++..++.++.|+++||..+||+....... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4667777777888888888999999999999999999999999999999999999999999983234433322211 11
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++....... +. .+.....+..++.|+......+....+..|.+|+++ |+++.
T Consensus 296 ~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 348 (379)
T TIGR00881 296 IVSLLVYWLN---PA------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAA 348 (379)
T ss_pred HHHHHHHhcC---cc------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHH
Confidence 1122211111 11 123444455556666555556666778899999888 99999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGF 223 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f 223 (562)
++++...++|..++|.+.|++.+..||+..|
T Consensus 349 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 349 GFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 9999999999999999999999988987654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-09 Score=111.67 Aligned_cols=173 Identities=16% Similarity=-0.041 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+...+.....+......|.|+.+++|++..+.+.......++..++.++.|+++|| +|+|+.+.++.++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~ 293 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVA 293 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 455666666666666666677778889988999999999988887888889999999999999 7999999999888877
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.++..+....+ ....++++++.++.++|.+...+......... ++++ |++..+.
T Consensus 294 g~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~ 348 (406)
T PRK15402 294 GLLLAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAA 348 (406)
T ss_pred HHHHHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHH
Confidence 777766541100 11355567788888999888777666555433 3355 8899999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~ 233 (562)
++...++|..+|+.+.+++.+..++....+.+.++.++.
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999999988777665555544444433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-09 Score=115.20 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKS-VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTC-VTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i-~~~~~~~ 112 (562)
+.+|...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++|| ++||+.. ....++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHH
Confidence 456777788888889999999999999987 357788899999999999999999999999999 7977753 3343344
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++..+.... + .....+.+..+.++|.....+.......|.+|+++ |+.++
T Consensus 321 ~~~~~~~~~~---~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~ 371 (412)
T TIGR02332 321 AAGWLLASAT---D--------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAI 371 (412)
T ss_pred HHHHHHHHhc---C--------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHH
Confidence 4333222111 1 11122222233334433333444455566677766 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGC 229 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~ 229 (562)
++.+...++|++++|.+.+.+.+.. +|+.+|++.+++
T Consensus 372 g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 372 AVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999998876 599988876653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=114.42 Aligned_cols=172 Identities=13% Similarity=0.042 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh---CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL---RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
|.++.+.+..++....+.....+.+.|+++.+ +.+....|.+.+...+...++.++.|++.|| +|||+.+.++.++
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l 293 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTI 293 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHH
Confidence 34455555555555555566667888888765 5566677888888888889999999999999 7999999999888
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++..+.... + +.+.+++..++.|++..........+..+..+++. +++.
T Consensus 294 ~~l~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~ 344 (396)
T TIGR00882 294 MSVRIIGSSFA---T--------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATI 344 (396)
T ss_pred HHHHHHHHHhc---C--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEe
Confidence 88877665543 1 25566777888888765554445555666666555 6666
Q ss_pred HHH-HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 192 YSY-FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 192 ~~~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
.+. ++...++|..+++.++|++.+..||+.+|.+.+++..+..+.
T Consensus 345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 345 YLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred ehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 666 677889999999999999999889999999877766555443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-09 Score=110.96 Aligned_cols=172 Identities=15% Similarity=0.009 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..+..+...++.+.+.+....+++.|+.+.+|++..+.+.+.+...++..++.++.|+++|| +|+|+.+..+..+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~ 278 (382)
T PRK10091 200 APWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLA 278 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHH
Confidence 34555555555556666666778889988899999999999999999999999999999999 79999999888877777
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccC-CCCCchhhhhhhhhHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQF-DEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~ 194 (562)
.++..... + ..+...+..++.+++.+...+.......+.. +++. ++.+ .
T Consensus 279 ~~~~~~~~--~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~ 328 (382)
T PRK10091 279 LLMLFFFG--G--------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--G 328 (382)
T ss_pred HHHHHHHH--h--------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--H
Confidence 65554321 1 1333444555555655444444443333333 3222 3333 3
Q ss_pred HHHHHhHHHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENM-GYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
.+...++|..+||.++|++.+. .+|+..+.+.++..++......
T Consensus 329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 3566789999999999998874 6899999887766655554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-09 Score=111.83 Aligned_cols=150 Identities=10% Similarity=-0.096 Sum_probs=110.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcc
Q 035554 46 LANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQS 125 (562)
Q Consensus 46 ~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~ 125 (562)
+.....+.+..++|.|+++ .|.+..+.+.+.+...++..++.++.|+++|| +|||+.+..+.++..++.++....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~--- 316 (426)
T PRK12307 242 SIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRI--- 316 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHH---
Confidence 3334445567788999886 59999999999999999999999999999999 799999998887766655444332
Q ss_pred cccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHH
Q 035554 126 FLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLF 205 (562)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~ 205 (562)
+. .....+.+..+..+++.....+..+.++.|.+|++. |+++.++.+...++|+.+
T Consensus 317 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~ 372 (426)
T PRK12307 317 PQ------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTF 372 (426)
T ss_pred cc------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHH
Confidence 11 012222222222233333445666778899999888 899999999999999999
Q ss_pred HhhhhhhcccccchhHHHH
Q 035554 206 SETVLVYAENMGYWVLGFW 224 (562)
Q Consensus 206 ~~~~~~~l~~~~~~~~~f~ 224 (562)
+|.+.+++.+..|+....+
T Consensus 373 gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 373 NSMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHHHHHHHcccHHHHHH
Confidence 9999999998888665433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-08 Score=101.72 Aligned_cols=161 Identities=17% Similarity=0.103 Sum_probs=115.4
Q ss_pred HHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc--cc-chH-HHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 56 VNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY--LG-RYL-TCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 56 ~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G-rk~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
.....|+++++|+++.+.....+...+- ...-++.|.++|-+ +| ||| -++++.++..++.+.++.. |.
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~---- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PA---- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---cc----
Confidence 3455688999999999988766665443 45557999999985 34 444 4456666665555555443 22
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
...+.....+..++..+|.+......-+++.|....+... |+...++.+....+|+.++..+.|
T Consensus 82 ------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 82 ------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSG 145 (433)
T ss_pred ------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1123445566777788999999999999999987544421 678889999999999999999999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 212 YAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 212 ~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+.+..+++..|.+..++..+..+..+..
T Consensus 146 ~l~~~~~~~~~f~i~~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 146 PLLDSFGPQGVFLISAALPLLMLIVALFL 174 (433)
T ss_pred hhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence 99998899999988876655554443333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-09 Score=109.39 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-GRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~i~~~~~~~~ 113 (562)
|..+.+.+..++....++++..++|.|+++ .|++..+.+.+.+.+.++..++.++.|+++|| + +||+.+.++.++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~ 274 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQL 274 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHH
Confidence 456666666677778888999999999975 69999999999999999999999999999999 7 56667777777777
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+.+.+. +. .... +...+.|++.|...|...+...+..++++ + ++...+
T Consensus 275 ~~~~~~~~~---~~--------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~---~--~g~~~~ 325 (355)
T TIGR00896 275 VGLCGLLFA---PM--------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA---Q--AAALSA 325 (355)
T ss_pred HHHHHHHHh---hh--------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH---H--HHHHHH
Confidence 777666554 21 1111 23467799999988887777776554322 1 578888
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY 218 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~ 218 (562)
+.+...++|..++|.+.|++.+..|
T Consensus 326 ~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 326 MAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888889999999999999987654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=114.02 Aligned_cols=174 Identities=13% Similarity=-0.029 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKS--VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~--~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
|.++......++..+.+.....+.+.|+.. +.+.+....+.+...+.+......++.|++.|| .++|+.+..+.++.
T Consensus 206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~ 284 (395)
T PRK10054 206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCF 284 (395)
T ss_pred ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHH
Confidence 455666666666666666565667777754 345556667777777777777778889999999 79999999998888
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++...+.+.. .+.+.++++..+.++|.+...|...+++.+..|++. |++.+
T Consensus 285 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~ 336 (395)
T PRK10054 285 VIGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYF 336 (395)
T ss_pred HHHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehH
Confidence 87776665431 124556667788899998888888889999998877 78888
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+.++ ...+|..+||.++|++.+..|....|++.+.+..+++++..
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 8654 56789999999999999999988888887776666665554
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=115.93 Aligned_cols=174 Identities=15% Similarity=0.065 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+..++...++.++....+...+|.+.++.+|.+....|++.+++.+|..++.++.+++.+| +++++.+..+.+++++
T Consensus 218 ~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 218 PPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFAL 296 (524)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHH
Confidence 344444455555566666667778999999999999999999999999999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+.+++. + +.+...++.++.|++.........+.+-+..|++. ||+.+++
T Consensus 297 ~~~~lal~---~--------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 297 ALLLLALS---P--------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred HHHHHhcc---h--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 87777765 2 36677778888899888888888888888888888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
++...+.+..+|.++.|.+.+..|.+..+.+++++.+++.++..
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888887776665555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=114.60 Aligned_cols=174 Identities=11% Similarity=-0.027 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-------HHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL-------TCVTF 108 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~-------~i~~~ 108 (562)
..|.+.+..++.....+.+..++|.|+.+++|++..+++.+.+.+.++..++.+++|+++|| +|||+ ...+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~ 331 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIV 331 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHH
Confidence 45556655556666667778889999999999999999999999999999999999999999 68762 22222
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
.++..+..+++... .+.+...+..++.+++.+...+...++..+..| ++ |
T Consensus 332 ~~l~~i~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~ 381 (476)
T PLN00028 332 QTLGGVFCIWLGRA-----------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------L 381 (476)
T ss_pred HHHHHHHHHHhccc-----------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------c
Confidence 22222222222211 123334444555555554444555555555433 44 7
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
+...++.+...++|+.++|.+.+ .....+|+.+|++.+++.+++.++.++.+
T Consensus 382 g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 382 GVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 88999988888888888776644 22345799999988887777777665543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=116.09 Aligned_cols=156 Identities=15% Similarity=0.067 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++..+++++...++|.|+++.+|.+..+++.......++..++.+++|++.|| +|||+.+.++..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHH
Confidence 456666777778888889999999999999999999999999999999999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..++.+... + ....+.+....++.|+|.+...+.......+.+|+++ |+++.++
T Consensus 334 ~~~~~~~~~~-~------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 388 (485)
T TIGR00711 334 GFYWRAFTFT-P------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSL 388 (485)
T ss_pred HHHHHhccCC-C------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHH
Confidence 7776653211 1 1134556666778899998887777777778788777 8999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccc
Q 035554 195 FYIALNLGCLFSETVLVYAENM 216 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~ 216 (562)
++...++|+.+|+.+.+.+.+.
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=112.62 Aligned_cols=161 Identities=19% Similarity=0.132 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+..++...++..++........+.|.+..+|.+ ...+.......++..++.++.++++|| +|+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHH
Confidence 67888888888988999888888999999988877 567777888899999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCch-hhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPK-EKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~ 193 (562)
+.+++.+... .+.+.+++...+.|++.+...+...++.+|..+.++-+ .+|..+..++
T Consensus 303 ~~~~~~~~~~---------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 303 GFLLLFFLGP---------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHHh---------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 9888877620 24778888899999999999999999999998865532 1223578889
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY 218 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~ 218 (562)
.+.....+|..+++.+.+.+.+..|
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998887755444
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=112.41 Aligned_cols=148 Identities=13% Similarity=0.031 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..+.+....++....++.+..++| ++.+++|.+..+.+...+...++..++.+++|+++|| +|||+.+....+....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 327 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHH
Confidence 4455566666677788888888888 6667789999999999999999999999999999999 7999555444333333
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..++.... . +.+.+++..++.|++.+...+...++..|.+|+++ |++++++
T Consensus 328 ~~~~~~~~---~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 378 (398)
T TIGR00895 328 AVLVGSTL---F--------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW 378 (398)
T ss_pred HHHHHHHh---h--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence 33322211 1 24556677788899999999999999999999887 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhc
Q 035554 195 FYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l 213 (562)
.+...++|..++|.++|++
T Consensus 379 ~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 379 AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999998875
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=115.44 Aligned_cols=154 Identities=16% Similarity=0.051 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+....+..++...++++...++|.|+++.+|+|..++|.....+.++..++.++.|++.|| +|+|+.+..+.++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 455666677777888888888999999999999999999999999999999999999999999 7999999988888887
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++..... ..+.+...+..++.|+|.|...+.......+..|+++ ++.+.++
T Consensus 338 ~~~~l~~~~~--------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~ 391 (495)
T PRK14995 338 SFYGLAMTDF--------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAI 391 (495)
T ss_pred HHHHHHHhcC--------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHH
Confidence 7766554310 1124445667788899999988888888888888877 8899999
Q ss_pred HHHHHhHHHHHHhhhhhhccc
Q 035554 195 FYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~ 215 (562)
++...++|+.+|+.+.+.+.+
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888754
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.7e-09 Score=107.95 Aligned_cols=174 Identities=15% Similarity=0.077 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWM-GSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
.++.+++..++...+......+.+.|+.+++|++..+.+++..... ++..++.+++|+++|| +|||+.+..+.++..+
T Consensus 210 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l 288 (402)
T PRK11902 210 GAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAV 288 (402)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Confidence 3444444444444333333334556777889999999999886654 4678899999999999 7999988877766655
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHH----HHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIY----LFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+.+......+. +.+.++++.. ..+++.+...+....++.+.+|+++
T Consensus 289 ~~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------- 340 (402)
T PRK11902 289 SNLGYWVLAVTPK-------------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ--------- 340 (402)
T ss_pred HHHHHHHHHhcCC-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH---------
Confidence 5443322111011 2344444443 3445555555555666665555333
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+++++...++|...++.++|++.+..||+..|.+.+++.+++.++...
T Consensus 341 -~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 341 -YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777766678999999999999999988877776655433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-08 Score=99.00 Aligned_cols=85 Identities=12% Similarity=-0.029 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc----------
Q 035554 147 ETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM---------- 216 (562)
Q Consensus 147 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---------- 216 (562)
++..++++.++.|.|.+...+..+++++++.++++ +.+.+++...+..+|..++|.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 58889999999999999999999999999988877 78999999999999999999999977631
Q ss_pred ------cchhHHHHHHHHHHHHHHHHH
Q 035554 217 ------GYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 217 ------~~~~~~f~i~~~~~~~~~~~~ 237 (562)
..|+++|++.+.+..+..+++
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888885555444333333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=110.83 Aligned_cols=169 Identities=14% Similarity=0.096 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFA-KSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|.++...+..++.....++...+++.|+ ++.+|.++.+++.....+.++..++.+++|++.|| +||||++..+.++..
T Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~ 336 (438)
T PRK10133 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 3344445555666677777778888896 56789999999999999999999999999999999 799999998877766
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.++..+. +. . ..+....+.|++.+...|+..+...+.++++. +.+.+
T Consensus 337 ~~~~~~~~~---~~--------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~ 385 (438)
T PRK10133 337 ALCLISAFA---GG--------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS 385 (438)
T ss_pred HHHHHHHHc---CC--------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence 665544432 11 1 22455677899999999999999999876532 34444
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSS 236 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~ 236 (562)
+.. ...+|+.++|.+.|++.+..| -+..|++..++.+.....
T Consensus 386 l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 443 234678888889999988777 788888777766554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=105.12 Aligned_cols=166 Identities=6% Similarity=-0.040 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+...+...+....++....+.|.|+++++|.++.+.+.+.....++..++.++.|+++|| +|||+.+..+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 284 (385)
T TIGR00710 206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAV 284 (385)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 445555555666667777788888999999999999999999999999999999999999999 7999999988887777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+++......+ ......+++...+.|++.+...+.......|..| ++ ++++.++
T Consensus 285 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 339 (385)
T TIGR00710 285 SAVLLEITAILG------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASAL 339 (385)
T ss_pred HHHHHHHHHHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHH
Confidence 776665441101 0123345555667888888888888888888765 45 7888998
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWIC 226 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~ 226 (562)
++.....++.+.+.+.+.+.+..+|...+...
T Consensus 340 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 340 FGTLRLVLGAIVGYLVSLIHGNTAWPMSLSCL 371 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccccChHHHHHHHH
Confidence 77777654444444455665555555444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.9e-09 Score=109.06 Aligned_cols=178 Identities=15% Similarity=-0.006 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-------chHHHH-
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG-------RYLTCV- 106 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-------rk~~i~- 106 (562)
+.+|.+.++.++++.+++.+..++|.|+.+.+|++..+.|+..+.-.+...+..+++|.++||... +||.+-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 688999999999999999999999999999999999999999999999999999999999999522 223332
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 107 TFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
++....++..+.+.+. +. ++ .......+.++..+.|+..++. ..-..|..| ++
T Consensus 338 i~~~~~ai~l~~l~~~---~~------~~--------~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~ap-q~----- 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFT---SD------EH--------RLLAVILLTIAIGLSGFNISGF----YKNHQDIAP-QH----- 390 (466)
T ss_pred HHHHHHHHHHHeeeec---CC------Cc--------chHHHHHHHHHHHHcccchhhh----Hhhhhhccc-hH-----
Confidence 3333344444444333 11 00 0001111222222222222221 222222232 33
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhcccc---cchhHHHHHHHHHHHHHHHHHHhc
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYAENM---GYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~---~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
-+..+++.+...++.+.++|.+.+.+.+. ..|+..|++.+++.+++.+++.+.
T Consensus 391 -a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 -AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 47899999999999999999999999843 379999999999888887766554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=111.08 Aligned_cols=145 Identities=15% Similarity=0.098 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWM-GSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
..+.+++..++.+++++....+++.|+++ +|++..+.+.+.+... ++..++.+++|+++|| +||||.+..+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence 46777777777889999999999999987 9999999998887765 5778999999999999 7999999988888777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.....+..+... + ++-...+.+.+..+.++.+++.+...+...++..|.+|+++ |++.+++
T Consensus 288 ~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 349 (356)
T TIGR00901 288 TNAGFVWLASNGH----------H--DGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMAL 349 (356)
T ss_pred HHHHHHHHHhcCc----------c--cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHH
Confidence 6665544311000 0 00000234566777778899999999999999999999999 9999999
Q ss_pred HHHHHh
Q 035554 195 FYIALN 200 (562)
Q Consensus 195 ~~~~~~ 200 (562)
++...|
T Consensus 350 ~~~~~~ 355 (356)
T TIGR00901 350 LSSLSA 355 (356)
T ss_pred HHHHHh
Confidence 887765
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.1e-09 Score=112.35 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhh------------HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASN------------TFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
....++..+.+|++..+.|.+++ +.|++..+.+. ......++..++.+++++++|| +|||++++++
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~ 371 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHH
Confidence 34445566788898888888886 57876543221 1223344556677889999999 7999999988
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 109 QAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
.++.+++.+++.+... +. . ....+.+..+...++.....+....+..|.+|++. |
T Consensus 372 ~~~~~~~~~~l~~~~~-~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R 426 (502)
T TIGR00887 372 FFILTVLFFVLGFAYN-HL-----------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------R 426 (502)
T ss_pred HHHHHHHHHHHHHHHH-hc-----------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------H
Confidence 8777776655554311 00 0 01111111112222222334566777899999988 9
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhcccc----------cchhHHHHHHHHHHHHHHHHH
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAENM----------GYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~----------~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+++.++.+...++|++++|.+.+++.+. .++...|++.+++.+++.+..
T Consensus 427 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988763 234556666665555554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=110.92 Aligned_cols=145 Identities=23% Similarity=0.295 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCC-hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT-NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
.+|.++...++..+.++....+++.|+.+++|++ ..+.+...+...+...++.++.|+++|| +|+|+..........+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 285 (352)
T PF07690_consen 207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLIL 285 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 3455666666667788889999999999999999 7899999999999999999999999999 7998888888777777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.+.+.+.... .+....++..++.|++.+...+...++..|.+|+++ |++..++
T Consensus 286 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 339 (352)
T PF07690_consen 286 GALGLLLLPFS--------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGL 339 (352)
T ss_dssp HHHHHCCSHHH--------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHH
T ss_pred HHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence 77666554211 135566667788899999999999999999998888 9999999
Q ss_pred HHHHHhHHHHHHh
Q 035554 195 FYIALNLGCLFSE 207 (562)
Q Consensus 195 ~~~~~~lg~~~~~ 207 (562)
++...++|+.++|
T Consensus 340 ~~~~~~~~~~igP 352 (352)
T PF07690_consen 340 FNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 9999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-09 Score=108.24 Aligned_cols=170 Identities=11% Similarity=0.052 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGL 116 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~ 116 (562)
++...+..+.....+.....++|.|+++..+ ++.+.+++.+...++...+..+.+++.||+++.++.+..+.++..++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 288 (400)
T PRK11646 210 FVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM 288 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 3333333333333334455678899887666 677888888877766665555556666553676777777777777777
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFY 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (562)
+++... + +.+.+.+...+.+++.+...|...+++.|..|+++ |++.+++++
T Consensus 289 ~~l~~~---~--------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~ 339 (400)
T PRK11646 289 FPIGMV---S--------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSR 339 (400)
T ss_pred HHHHHh---h--------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHH
Confidence 666554 1 24455566677788888888999999999999888 999999999
Q ss_pred HHHhHHHHHHhhhhhhccccc---c-hhHHHHHHHHHHHHHHHH
Q 035554 197 IALNLGCLFSETVLVYAENMG---Y-WVLGFWICAGCDILAFSS 236 (562)
Q Consensus 197 ~~~~lg~~~~~~~~~~l~~~~---~-~~~~f~i~~~~~~~~~~~ 236 (562)
...++|..+||.++|++.+.. + ....|++..+..+++.+.
T Consensus 340 ~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 340 LGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999998753 2 345555555555444444
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-08 Score=107.89 Aligned_cols=162 Identities=12% Similarity=0.006 Sum_probs=112.3
Q ss_pred HHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 035554 51 FAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRP 130 (562)
Q Consensus 51 ~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
++.+..+.|.+ .+++|.+....++......+...++.+++|+++|| +|||+.++.+.++.+++.+++..... +.
T Consensus 287 ~~~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~-~~--- 360 (479)
T PRK10077 287 INVVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFY-TQ--- 360 (479)
T ss_pred hhHHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHh-cC---
Confidence 33444444444 45688887777777777788889999999999999 79999999999988888877654411 00
Q ss_pred CCCCCCCCcCCCCCCchHHHHHHHHHHHHHhccc-chhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 131 HGCGKIGQLCDPHSPAETAIFYISIYLFALGIGA-PEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
. .......+..+.+++.+. ..|....++.|.+|+++ |+++.++.+...++|..+++.+
T Consensus 361 --------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~ 419 (479)
T PRK10077 361 --------------A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWT 419 (479)
T ss_pred --------------c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112233334444444433 34677899999999888 9999999999888888887555
Q ss_pred hh------hcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 210 LV------YAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 210 ~~------~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.+ ++.+..+|+..|++.++..+++.++.+.
T Consensus 420 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 420 FPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred hHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 44 4445678888888877665555554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=105.52 Aligned_cols=185 Identities=14% Similarity=-0.003 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..|++.+..++...++.+...++|.|+++.+. ............+...+..|++|+|+|| +|+||++.++.++.++
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHH
Confidence 467888888888888888898899999988653 3333333444567888899999999999 7999999999887776
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCC----------C---
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEE----------D--- 181 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~----------~--- 181 (562)
+....... .|. ....+++.+.+..+...+..|.-..+...++.+.+|++ +
T Consensus 329 ~~~~~~l~--lp~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 329 FSALLFLT--LPG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHH--hcc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 66443332 121 01234666666666655666666667777777777641 0
Q ss_pred --chhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHHHHh
Q 035554 182 --PKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM-GYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 182 --~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
...++.-+...++......+|+.+-|.+.+...+. .++...|+...+..+++.++-+.
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 01112356777888888888888888777766554 45888888888777777666443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=121.28 Aligned_cols=164 Identities=16% Similarity=0.031 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChh-hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNA-EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
+.++..++..++.....+....+++.|+++.+|++.. +.+++.+...++..++.++.|+++|| +++++++.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHH
Confidence 4556666666666677777888899999999999999 99999999999999999999999999 799999988888777
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.+.. +.+.++++.++.|++.+...+...+++.+..|++. |+++++
T Consensus 311 ~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~ 361 (1146)
T PRK08633 311 LSLFLLPTAP-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLA 361 (1146)
T ss_pred HHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhH
Confidence 7776665541 25567777888899999988899999999999888 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhccc-ccchhHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAEN-MGYWVLGFWICAG 228 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~f~i~~~ 228 (562)
+++...++|.++++.+++.+.. .+++...|++.+.
T Consensus 362 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 362 ANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999888877776643 2345555554443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-07 Score=95.14 Aligned_cols=363 Identities=16% Similarity=0.130 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhh-hhhHHHHH----HHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE-ASNTFSRW----MGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~-~~~~~~~~----~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
....+.+...+.....+..+.....+....++.+... .+...... .+...+..++-|.++|| +|||..+.....
T Consensus 22 ~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~ 100 (463)
T KOG2816|consen 22 HLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLF 100 (463)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHH
Confidence 3444444444444444444466666666665554433 33333333 57888899999999999 699999999888
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
...+..+.+.+. .+++++ ..-..-+.+.......++++|...+++ |..
T Consensus 101 ~~~l~~~~~~~~-------------------------~~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~------R~~ 148 (463)
T KOG2816|consen 101 GTILPALCLLFQ-------------------------GYWFFL-LLGLSGGFSAIFSVGFAYVADISSEEE------RSS 148 (463)
T ss_pred HHHHhHHHHHHH-------------------------HHHHhh-hcccccchhhhhhhhhhheeeccchhH------HHH
Confidence 777777666554 233333 111122334456777888999887777 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCC-CchhHHHHHHHHHHhhhc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSG-NPLSRFSQVIVASLRKIN 269 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (562)
.+++.+.....+..++|.+++++.+..|.-..|.++.+..++..+..+...|+...++.+. .+.. +
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~-------------~ 215 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR-------------E 215 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc-------------c
Confidence 9999999899999999999999999999999999999988887776555444332221111 0000 0
Q ss_pred ccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhcc
Q 035554 270 LEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMN 349 (562)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 349 (562)
. .+ .+...+..++.. ..... ...++ ..+.++... .......-....+
T Consensus 216 ~-~~--~~~~~~~~~~~~--~~~~~-~~~~r-----------------------~~l~l~l~~----~~~~~~~~~~~~~ 262 (463)
T KOG2816|consen 216 L-TP--GSLDSSHVADAF--QSLTK-VGPDR-----------------------LLLLLLLVA----FLSSLPEAGGASD 262 (463)
T ss_pred c-CC--Ccccchhhhhhh--hhhcc-cCCCc-----------------------cchHHHHHH----HHHHHHHhcCcee
Confidence 0 00 000000000000 00000 00000 000000000 0000000000000
Q ss_pred CCC-c---ccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 350 TGV-S---NFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLK 425 (562)
Q Consensus 350 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~ 425 (562)
..+ + .++........+ ....-........+..|...+... ..+.+..|++...++.++.++.+
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~-~~~~~~~~~i~~l~~~~~l~~~l~-------~~~~i~lGl~~~~~~~~~~af~~----- 329 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDL-LSLVSILGIISQLLLLPLLSSILG-------EKRLISLGLLSEFLQLLLFAFAT----- 329 (463)
T ss_pred EEEEEEeeecCcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh-------hhhHhhHHHHHHHHHHHHHHHhc-----
Confidence 000 0 001111000000 001111112222222333334322 22267889999999998888873
Q ss_pred hhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 035554 426 YASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTT 503 (562)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~ 503 (562)
+. |+.-...+.........|...+++...+.++.+|+..++.....++.+.+++.+.+.+...+.
T Consensus 330 ------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 330 ------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred ------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 22 334444555666677889999999999999999999999999999999999999998877553
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-08 Score=102.51 Aligned_cols=167 Identities=6% Similarity=-0.055 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++..++..++...+.++...+.+.++.+++|++..+.+.+...+.++..++.++.|++.|| .++ +.+..+..+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~-~~l~~~~~~~~~ 293 (394)
T PRK10213 216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVK-LALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-hHHHHHHHHHHH
Confidence 455555555566666677766776454456789999999999999999999999999999999 454 444444444333
Q ss_pred H-HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 G-LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
. .++.... + +.+.+.+..++.|++.+...+...+++.+..|+ + +++..+
T Consensus 294 ~~~~l~~~~---~--------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~ 343 (394)
T PRK10213 294 SALVLTLWG---S--------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGS 343 (394)
T ss_pred HHHHHHHHh---h--------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHH
Confidence 3 3332222 1 255666777888999999989888888887763 3 345566
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILA 233 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~ 233 (562)
++....++|..+||.++|++.+..|++..+...++...+.
T Consensus 344 ~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 344 IQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 6677778999999999999999889888888776654433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=103.58 Aligned_cols=151 Identities=7% Similarity=-0.045 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+...+..++...+.+....+.+.++.+++|++..+.+.......++..++.++.|+++|| +||||.+..+..+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFI 272 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH
Confidence 344555555556666667777777888888899999999999999999999999999999999 7999999988776544
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+.+......+ ...+.+.++..+.+.+.+...+.......|..| ++ +++..++
T Consensus 273 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~ 326 (377)
T PRK11102 273 MGIWLVVSALLD-------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSL 326 (377)
T ss_pred HHHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHH
Confidence 333322221001 123444444444555555555555566666655 45 6777777
Q ss_pred HHHHH-hHHHHHHhhhhhh
Q 035554 195 FYIAL-NLGCLFSETVLVY 212 (562)
Q Consensus 195 ~~~~~-~lg~~~~~~~~~~ 212 (562)
++... .+|..+++.+++.
T Consensus 327 ~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 327 AGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 55443 4666677665443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=120.13 Aligned_cols=184 Identities=13% Similarity=-0.063 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++.++.++++..++|.|+++.+|.+..+.|++.+.+.++..++.++.|+++|+ .++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHH
Confidence 577777887888888888888999999999999999999999999999999999999999998 5777766666555555
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcC-CCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLC-DPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+.+.+.+... ....+ .. . .... .-....+.+.++++.++.|++.+...+...+++.+.+|++. |+++++
T Consensus 304 ~~~~l~~~~~-~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g 373 (1140)
T PRK06814 304 FGLDLAFASS-SVPAE-PA-Q-LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIA 373 (1140)
T ss_pred HHHHHHhccc-ccccc-cc-c-ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeH
Confidence 4443333100 00000 00 0 0000 00000235667778888999999999999999999999999 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhccc-ccchhHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAEN-MGYWVLGFWICAGC 229 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~f~i~~~~ 229 (562)
.++...++|..+++.+.+.+.. ..++...|++.+++
T Consensus 374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999888863 34666666554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.4e-08 Score=95.18 Aligned_cols=171 Identities=16% Similarity=0.076 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+..|.+.+-.-+.++.+|.+..|+|.++.+ -|+|..++|++.+...+......+...++++|.-.+|+..+...+++.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~ 286 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV 286 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 467888888889999999999999999885 6999999999999999999999999999999877889999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
|.+.+.+. |. +. .+...+++|+|.|..+|....++.+..++.+ + -++..++
T Consensus 287 G~~G~~~~---P~-------------------~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgm 337 (395)
T COG2807 287 GLVGLLLA---PG-------------------QL--PILWALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGM 337 (395)
T ss_pred HHHHHHHh---hh-------------------hH--HHHHHHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHH
Confidence 99888876 43 12 2222578899999999999999998765533 2 4566777
Q ss_pred HHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFS 235 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~ 235 (562)
-+....+=+.+||.+.|++.|.. +|+..+..-+.+.++..+
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 77777888889999999998865 688776655554444333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-08 Score=100.97 Aligned_cols=166 Identities=10% Similarity=-0.028 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch---HHHH-HHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY---LTCV-TFQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk---~~i~-~~~~ 110 (562)
|.+|.+....++....+|++..|+|.|+++ .|++.. .+.......+... +..++++|| ..|| +... ...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHH
Confidence 677889899999999999999999999965 678764 5555444444444 446888888 5654 3322 2333
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+.++......... +....++...+.+++.....+...++.+|.+|++. |++
T Consensus 266 ~~a~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt 316 (368)
T TIGR00903 266 LIAAFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGK 316 (368)
T ss_pred HHHHHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCc
Confidence 3333333332221 12233444555667777777788899999999999 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~ 237 (562)
+.++.+...++|+..+|.+.+.+.. +....|.+.++..+++.+..
T Consensus 317 ~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 317 AAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887763 66667766666555555544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-08 Score=100.99 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=146.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+...+++.++.+=+...+......|-...+|++..+.........+...+++++.|+|.|| +|-|+++.+++++..+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHH
Confidence 477778888888887888888888999999999999999999889999999999999999999 7999999999998877
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
..+...+.. ...-+.+.-++.|+..|......-++.++.+|+++ -++.|++
T Consensus 331 ~~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgl 381 (438)
T COG2270 331 AALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGL 381 (438)
T ss_pred HHHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeeh
Confidence 776655541 12335555567899999999999999999999988 7899999
Q ss_pred HHHHHhHHHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHHHHhc
Q 035554 195 FYIALNLGCLFSETVLVYAENMG-YWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~-~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|+.....+..+||++.+.+.+.. +-|..+...+++..+++++++..
T Consensus 382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v 428 (438)
T COG2270 382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV 428 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence 99999999999999999887754 46777776666666666655433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-07 Score=89.78 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=109.9
Q ss_pred HhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCC
Q 035554 64 SVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH 143 (562)
Q Consensus 64 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (562)
++.|++..+++.++.+....+.+..++.|.++|| +||||..+..+++++++.+..-. +
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~----~----------------- 119 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHS----S----------------- 119 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhc----c-----------------
Confidence 5789999999999999999999999999999999 79999999999999888765432 2
Q ss_pred CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC-chhhhhhhhhHHHHH-HHHhHHHHHHhhhhhhcccccch--
Q 035554 144 SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED-PKEKKSKTSFYSYFY-IALNLGCLFSETVLVYAENMGYW-- 219 (562)
Q Consensus 144 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~-~~~~lg~~~~~~~~~~l~~~~~~-- 219 (562)
++..++++|++-|++......+..+.......+++ |++. .+.-++... ..+.+-+..+..++-++.+..+.
T Consensus 120 ---~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~ 194 (354)
T PF05631_consen 120 ---NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP 194 (354)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence 48889999999999999988888776643322211 2111 233333322 23334455555566666665544
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCc
Q 035554 220 VLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 220 ~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
..+|..+.++.+++.++.....+
T Consensus 195 vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 195 VAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred cchHHHHHHHHHHHHHHHHhccc
Confidence 77899888888877776554444
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-08 Score=107.06 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++|| +|+|+++.++.++.++
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 567777777777788888877777888888889877666555555567778899999999999 7999999999988888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCch-hhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPK-EKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~ 193 (562)
+.+++.+. +. .+.+.+++..++.++|.+...+...++.+|..|.++-+ .+|.++..++
T Consensus 307 ~~~~~~~~---~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~ 365 (448)
T PRK09848 307 GYLLFFWV---SV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYS 365 (448)
T ss_pred HHHHHHHc---Cc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHH
Confidence 87766553 21 13556667778889999999999999999988755421 1122578889
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccch
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
.++....+|..+++.+.+.+.+..||
T Consensus 366 ~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 366 LFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999988876544443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=108.53 Aligned_cols=165 Identities=14% Similarity=0.041 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.++...++.+.+.+......+.|++..++ +....+.+.+...++..++.++.++++|| +|+|+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence 778888888888888877777776666655554 55566777777778889999999999999 7999999988887776
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC-chhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED-PKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~ 193 (562)
+.+.+.+....+ ....+.+++..++.+++.+...+...++++|..|.++ +..+|..+..++
T Consensus 309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 665544321001 1135566667778889999999999999999987543 112222466888
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccch
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
+..+...+|..+++.+.|++.+..||
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999988887654444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-08 Score=102.67 Aligned_cols=77 Identities=10% Similarity=0.005 Sum_probs=62.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhh
Q 035554 45 GLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFA 122 (562)
Q Consensus 45 ~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~ 122 (562)
.+...+......+.+.|+++++|++..+.+.+.....++..++.++.|++.|| +|||+.+.++..+..++.+.+.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 213 TLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455566778888999999999999999999999999999999999 799999999988888877776654
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-08 Score=108.27 Aligned_cols=161 Identities=13% Similarity=0.035 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.++...++...+........+.|.+..++. ....+.+.....+...++.++.++++|| +|+|+.+..+.++.++
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~ 306 (444)
T PRK09669 229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVI 306 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 4555555555555555544444444444444443 3344455556677788888999999999 7999999988776665
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCc--hhhhhhhhhH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP--KEKKSKTSFY 192 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~ 192 (562)
+.....+. +. .+.+.+++..++.|++.+...+...++++|..|.++. ++++ .+..+
T Consensus 307 ~~~~~~~~---~~------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~-~g~~~ 364 (444)
T PRK09669 307 LSALIFFI---PP------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRL-DGLVF 364 (444)
T ss_pred HHHHHHHh---Cc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCc-chHHH
Confidence 44333332 11 1356677777889999999999999999999875442 2222 46778
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccch
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGYW 219 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~~ 219 (562)
+.+++..++|..+++.++|++.+..||
T Consensus 365 s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 365 STNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999887665555
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-07 Score=98.86 Aligned_cols=161 Identities=11% Similarity=-0.148 Sum_probs=119.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhc
Q 035554 45 GLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 45 ~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
.+.+.+.......++.|+++.+|.++.+.|.+.....++..++.++.|++.|| .++|+++..+..+ .+..+++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~-- 290 (393)
T PRK11195 215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ-- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH--
Confidence 34455556666677888988999999999999999999999999999999999 6999988877533 3333333322
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
+ +.+...+..++.|++.+...++..+.+.+..|++. +++++.++.+...++|..
T Consensus 291 -~--------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~ 344 (393)
T PRK11195 291 -H--------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAML 344 (393)
T ss_pred -h--------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHH
Confidence 1 24555666778899988888888888776543321 158899999999999999
Q ss_pred HHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 205 FSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
++..+.+.+ +.+|-+..+.+..++.+++..+
T Consensus 345 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 345 LMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 999888866 4567777776666555555444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-07 Score=96.53 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGL 116 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~ 116 (562)
.+...+...+....++....+.|.|+++ +|++..+.+.......++..++.++++++.|| +|+|+.+....+..+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~ 282 (401)
T PRK11043 205 YLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSV 282 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHH
Confidence 3333334444455666667778888764 79999999988888888889999999999999 799998776665555544
Q ss_pred HHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHH
Q 035554 117 LGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFY 196 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 196 (562)
+.+......+. .+.+.+++...+.+++.+...|...+...|..| ++ ++++.++++
T Consensus 283 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~ 337 (401)
T PRK11043 283 IAIWLASLLSH------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQN 337 (401)
T ss_pred HHHHHHHHhcc------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHH
Confidence 43322211011 124445556667788888888888887777765 45 789999999
Q ss_pred HHHhHHHHHHhhhhhhcccccchhHH
Q 035554 197 IALNLGCLFSETVLVYAENMGYWVLG 222 (562)
Q Consensus 197 ~~~~lg~~~~~~~~~~l~~~~~~~~~ 222 (562)
.....++..++.+.+.+.+.......
T Consensus 338 ~~~~~~~~~~~~~~g~l~~~~~~~~~ 363 (401)
T PRK11043 338 TLQLGLCFLASLLVSALISTPLLTTG 363 (401)
T ss_pred HHHHHHHHHHHHHHHHccCCChhHHH
Confidence 88888888888888888764444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-10 Score=119.91 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=2.9
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
...++.......-+.+.|+++.+++|++.+.+.++..+..++..+..+| -.|-|.+.+|.+++++|.+++++-+.+-.
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~- 93 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSG- 93 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcC-
Confidence 6666777777778899999999999999999999999999999999999 58888899999999999998876322111
Q ss_pred CCCCCCCC----------CCcC-------------------CCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC
Q 035554 129 RPHGCGKI----------GQLC-------------------DPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE 179 (562)
Q Consensus 129 ~~~~~~~~----------~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 179 (562)
++.++.. .+.| +........+++++.++.|+|.....+...+++=|-.++
T Consensus 94 -~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~ 172 (539)
T PF03137_consen 94 -PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK 172 (539)
T ss_dssp -----------------------------------------------------------SSS------------------
T ss_pred -CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence 1111110 1223 111112356788899999999999999999988887776
Q ss_pred CCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc---------------------c-cchhHHHHHHHHHHHHHHHHH
Q 035554 180 EDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN---------------------M-GYWVLGFWICAGCDILAFSSL 237 (562)
Q Consensus 180 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~---------------------~-~~~~~~f~i~~~~~~~~~~~~ 237 (562)
++ -...+++.+....+|.++|-++++...+ + ..||.+|.+.+++.++..+-+
T Consensus 173 ~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 173 KN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 5688899999999999999888876532 1 148889998888777766666
Q ss_pred HhcCcceeec
Q 035554 238 LSGTLRYRHF 247 (562)
Q Consensus 238 ~~~~~~~~~~ 247 (562)
+...++.+..
T Consensus 247 ~~FPk~lp~~ 256 (539)
T PF03137_consen 247 FFFPKKLPGT 256 (539)
T ss_dssp ----------
T ss_pred HcCCccCCCc
Confidence 6655555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-08 Score=103.67 Aligned_cols=176 Identities=19% Similarity=0.167 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH--HHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL--TCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~--~i~~~~~~~ 112 (562)
+.++.+.+...+..++++.-..+++.|.+ ..|++..+++.+.++..+...++.++.|+++|+ ...++ +..++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHH
Confidence 57778888888889999999999999988 789999999999999999999999999999999 56434 334555555
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.++.+.++++. +++.++....+.|+..|......+..+.|..+.++ ...++
T Consensus 376 gl~~~~~p~~~-----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~ 426 (509)
T KOG2504|consen 376 GLARLFLPFAT-----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAY 426 (509)
T ss_pred HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHH
Confidence 55555555541 36778888889999999998888889999999988 89999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
++......++..++|.+.|++.+..+ |...|+.+.++.+++...++...
T Consensus 427 Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 427 GLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999988776 99999999999888887766554
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.5e-07 Score=96.22 Aligned_cols=202 Identities=12% Similarity=0.109 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.+..++....+....+.+.......-+.+.|+++.++.|++.+.+.++..+...+..+.+-| .-|-|.+-+|++++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHH
Confidence 556666666666665666888888888999999999999999999999999999999999999 5888899999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCC----------------------------CCcCC---CCCCchHHHHHHHHHHHHHhcc
Q 035554 115 GLLGLSFATQSFLLRPHGCGKI----------------------------GQLCD---PHSPAETAIFYISIYLFALGIG 163 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~---~~~~~~~~~~~~~~~l~g~g~g 163 (562)
+.++.++-+.+.. ++.++.. .+.|. .++...+.+++++.++.|+|..
T Consensus 175 gsll~alPHf~~~--~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 175 GSLLFALPHFFSG--PYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHHHhChHHhcC--cchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 9998876422111 1111110 01110 1111234467788899999999
Q ss_pred cchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccc-------------------cchhHHHH
Q 035554 164 APEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENM-------------------GYWVLGFW 224 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~-------------------~~~~~~f~ 224 (562)
.+.+...+++=|-...++ -...+++.+....+|.++|.++++++.+. ..||..|+
T Consensus 253 pi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL 326 (735)
T KOG3626|consen 253 PIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL 326 (735)
T ss_pred CCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence 998888888877666555 56889999999999999999888776421 13899999
Q ss_pred HHHHHHHHHHHHHHhcCccee
Q 035554 225 ICAGCDILAFSSLLSGTLRYR 245 (562)
Q Consensus 225 i~~~~~~~~~~~~~~~~~~~~ 245 (562)
+++.+..+..+.+++..+..+
T Consensus 327 i~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 327 ICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHhCcccCc
Confidence 999888887777776655443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.9e-08 Score=104.18 Aligned_cols=131 Identities=17% Similarity=0.075 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHH
Q 035554 79 RWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLF 158 (562)
Q Consensus 79 ~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (562)
...+....+.+++++++|| +|||+.+.++.++..++.+++.+. +. ...+...+..++.
T Consensus 363 ~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~---~~------------------~~~~~~~~~~~~~ 420 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFV---PV------------------DLYFLRTALAVLG 420 (505)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHc---CC------------------CchHHHHHHHHHH
Confidence 4456667788899999999 799999999988888777766654 21 0123344444555
Q ss_pred HHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 159 ALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 159 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+++.+...+....+..|.+|++. |+++.++.+....+|+.++|.+.+ +.+ .++...+++.+++.+++.++.+
T Consensus 421 ~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
T TIGR00898 421 KFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGILTL 492 (505)
T ss_pred HHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence 66666677888899999999888 999999999999999999999888 433 4566677766665555555444
Q ss_pred h
Q 035554 239 S 239 (562)
Q Consensus 239 ~ 239 (562)
+
T Consensus 493 ~ 493 (505)
T TIGR00898 493 F 493 (505)
T ss_pred c
Confidence 3
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-07 Score=96.56 Aligned_cols=181 Identities=9% Similarity=-0.013 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|+....++..++...+.-....+.+.|+++.-|.+....+.+.+...++-...-.+.+++-.| +|-|+++.++.+.+++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~v 285 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAV 285 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 345555555566666666677888999987655777788887777778778888899999999 7999999999999888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
=..+.+.... |. ........++..+.|+..|....+...++.+..|++. |+++-++
T Consensus 286 R~~l~a~~~~-~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l 341 (400)
T PF03825_consen 286 RWLLYAYFSD-PW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL 341 (400)
T ss_pred HHHHHHHhcC-Cc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence 7777666511 11 0012223344567899999999999999999999999 8999999
Q ss_pred HHHH-HhHHHHHHhhhhhhcccccchh------HHHHHHHHHHHHHHHHHHhc
Q 035554 195 FYIA-LNLGCLFSETVLVYAENMGYWV------LGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 195 ~~~~-~~lg~~~~~~~~~~l~~~~~~~------~~f~i~~~~~~~~~~~~~~~ 240 (562)
++.. ..+|..+|..++|++.+.+|-+ ..+.++++..++..+++++.
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 7765 4799999999999999876533 44555555544444444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=93.77 Aligned_cols=171 Identities=13% Similarity=0.017 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--CCCh----hhhhh-------------HHHHHHHHHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL--RQTN----AEASN-------------TFSRWMGSLYLSSLMGAFL 94 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l--g~s~----~~~~~-------------~~~~~~~~~~~~~~~~G~l 94 (562)
.|..+++....|...+.||++.-......+.+. |.++ .+.-. =..+..+...-+.++.|++
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence 356677778888889999998876666555432 1111 11111 0223356667788999999
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhh
Q 035554 95 SDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGA 174 (562)
Q Consensus 95 aDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 174 (562)
.|| +||||++..+++++.+..+++..+-+ +. ....++..+|+.+.. .+.+.+.+-.
T Consensus 405 ver-lGRKkTMal~l~~f~iflfll~~c~~-rn------------------~~tvllf~arafisg----~fqvaYvYtP 460 (528)
T KOG0253|consen 405 VER-LGRKKTMALSLILFGIFLFLLTTCKT-RN------------------AYTVLLFTARAFISG----AFQVAYVYTP 460 (528)
T ss_pred HHH-hcchhHHHHHHHHHHHHHHHHHHhcC-cc------------------hhHHHHHHHHHHHhc----hheEEEEecC
Confidence 999 89999999999999888877765511 11 123345556655433 3445678899
Q ss_pred ccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 175 DQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 175 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
|.+|+.. |+.+.+.......+|+.++|.++.. .+ .+-..+..+...+.+++.+.
T Consensus 461 EVyPTav------RatgvGtcSsmaRIggI~~p~iA~~-~e-~s~sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 461 EVYPTAV------RATGVGTCSSMARIGGIFSPVIAMR-AE-LSTSLPIFVYGALFILAGIA 514 (528)
T ss_pred cccchhh------hhcchhhhhhHHhhhhhhhhHHHHH-hc-cceeehHHHHHHHHHHHHHH
Confidence 9999988 9999999999999999999988832 22 23333444444444444444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=100.12 Aligned_cols=142 Identities=18% Similarity=0.090 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+.+.+..++.....+.+..+++.|+++.+|++..+++.+...+.+...++.+++|+++|| +|||+.+..+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAM 303 (366)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHH
Confidence 345666666666667778888999999999999999999999999999999999999999999 7999988887776666
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..++.+... + ..+.+.+++...+.+++.|...+...++..+.+| ++ +++..++
T Consensus 304 ~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~ 357 (366)
T TIGR00886 304 GAFLVVLGLV-S------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGL 357 (366)
T ss_pred HHHHHHhcCC-C------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHH
Confidence 6655544311 0 0024444455555566666666677778888776 45 7899999
Q ss_pred HHHHHhHHH
Q 035554 195 FYIALNLGC 203 (562)
Q Consensus 195 ~~~~~~lg~ 203 (562)
.+...++|+
T Consensus 358 ~~~~~~~g~ 366 (366)
T TIGR00886 358 VGAIGNLGG 366 (366)
T ss_pred HHHhccCCC
Confidence 888877763
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-07 Score=97.29 Aligned_cols=166 Identities=14% Similarity=0.041 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSV-LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~-lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|..+...+..++......+...+++.|.++. .+.+....+...+.+..+..++.+++|+++|| +++||++.++.++.+
T Consensus 232 ~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~ 310 (410)
T TIGR00885 232 RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGM 310 (410)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 3445555556665555557778889998653 24455555666777778889999999999999 799999988888777
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+..++..+. +. . .......+.|+..+.++|...+...+..+++. ......
T Consensus 311 ~~~ll~~~~---~~--------------------~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~ 360 (410)
T TIGR00885 311 ALCLGSIFA---GG--------------------H-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAG 360 (410)
T ss_pred HHHHHHHHc---CC--------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHH
Confidence 777666654 11 1 23456667788888889999999999887554 222222
Q ss_pred HHHHHHhHHHHHHhhhhhhccccc------chhHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMG------YWVLGFWICAGCDILA 233 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~------~~~~~f~i~~~~~~~~ 233 (562)
+ ... -+|+++.|.+.|++.|.. +.+..|+++.+|.+..
T Consensus 361 l-~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 361 L-VMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred H-HHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 2 222 399999999999999843 5888999888877644
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-07 Score=95.58 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=103.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhc
Q 035554 45 GLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQ 124 (562)
Q Consensus 45 ~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
++...+........+.|+++.+|.+..+.+++.....++..++.++.+++.|| +|++.... .....++.+.......
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~--~~~~~~~~~~~~~~~~ 293 (394)
T PRK11652 217 IGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQS--VICCLLAGLLMWIPGW 293 (394)
T ss_pred HHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 33333344444556778888899999999998888888888899999999999 57433332 2222222222111100
Q ss_pred ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHH
Q 035554 125 SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCL 204 (562)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 204 (562)
.. ....+.+.++..+.+++.+...|...+...|.+| ++ ++...++.+...++|+.
T Consensus 294 -~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~ 348 (394)
T PRK11652 294 -FG-----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSG 348 (394)
T ss_pred -hc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHH
Confidence 00 0124556777788899999999999999988876 34 67888999989999999
Q ss_pred HHhhhhhhcccccchhHHH
Q 035554 205 FSETVLVYAENMGYWVLGF 223 (562)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~f 223 (562)
+++.+++++.+...+....
T Consensus 349 ~~~~~~~~~~~~~~~~~~~ 367 (394)
T PRK11652 349 LAALLSAMLPQTGQFSLGL 367 (394)
T ss_pred HHHHHHHHccCCchHHHHH
Confidence 9999999887654444333
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=98.00 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=128.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|.+.++++..++...++....+.+..|.+..+|.++............+..++.++...|++| +|+|+++..+.++.+
T Consensus 235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~ 313 (467)
T COG2211 235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLA 313 (467)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHH
Confidence 3666777777777777777777778888888899998888888888888888989999999999 799999999999999
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC--chhhhhhhhh
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED--PKEKKSKTSF 191 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~~ 191 (562)
++.+++.+. |. .+.+++++..++.++|.+...+...++++|..+-++ .+.|+ -|..
T Consensus 314 i~~~~~~f~---~~------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~-eGi~ 371 (467)
T COG2211 314 VGYLLLYFT---PA------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR-EGIV 371 (467)
T ss_pred HHHHHHHhh---cC------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc-hhhH
Confidence 999998887 21 247788888889999999999999999999876554 23333 4667
Q ss_pred HHHHHHHHhHHHHHHhhhhhhccc
Q 035554 192 YSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
++.+....=+|.+++..+.|++..
T Consensus 372 ~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 372 YSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777788887776666543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-07 Score=95.60 Aligned_cols=189 Identities=16% Similarity=-0.002 Sum_probs=124.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+++..+..+...++..++-.-........+-..-|++..++.++.....+...++.+++.++.|| +|||+.++++..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~ 344 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSL 344 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHH
Confidence 344566666666666665544444444455555679999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhccc-chhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGA-PEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
..+..+++......... ......+..+++.++..++.+. ..|...-+.+|++|.+. |..
T Consensus 345 ~~~~~~~~~~~~~l~~~--------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~a 404 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNS--------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSA 404 (485)
T ss_pred HHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHH
Confidence 88888777665332220 0000011223444443333322 35677788899999888 889
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.++-...+.+...+-.+.-..+.+..|- ..|.+..+..++..+..+...|
T Consensus 405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lP 455 (485)
T KOG0569|consen 405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLP 455 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCc
Confidence 99887777777777666666666665553 3444444444444444443333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=90.77 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC---CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLR---QTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
|.+|.+.+........|+..-.-.+.|.+..+. .++...|.+.+...+.-.+.-.++.++.+| +|.|+.++++..+
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 678877777766666777766668888886543 344567888888888888888899999999 8999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+.+=..+++++ + +.+.+.+...+-++-.+....+..-++++.+|++- ..+.
T Consensus 299 ~~iRi~~~~~~---~--------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~ 349 (412)
T PF01306_consen 299 MAIRIIGSGFA---T--------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATL 349 (412)
T ss_dssp HHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHH
T ss_pred HHHHHHHHhhh---c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHH
Confidence 98888887776 2 37788899999999999999999999999998766 5677
Q ss_pred HHH-HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 035554 192 YSY-FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 192 ~~~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
+.+ ++.+..+|..+.+.++|++.+..|++..|++.+.+.++..++-.
T Consensus 350 y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~ 397 (412)
T PF01306_consen 350 YLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISA 397 (412)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhe
Confidence 777 56788899999999999999999999999877766655555433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.8e-06 Score=90.33 Aligned_cols=185 Identities=10% Similarity=-0.027 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhh----hhhHHHHHHHHHHHHHHHHHH----HhhhcccchHHH--
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAE----ASNTFSRWMGSLYLSSLMGAF----LSDSYLGRYLTC-- 105 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~----~~~~~~~~~~~~~~~~~~~G~----laDr~~Grk~~i-- 105 (562)
.+..+++...+.+..+.-+.+.++.|.++..+.+... .+++.+...+...+.+++..+ +.||..+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 3445555556666777777888888888765544322 667777777777777777554 444311223333
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
.+|.++.+++.+.+.+..... +.+...+.+++++..++.++|.....|...++..+..|++.
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~--------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~---- 414 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFA--------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL---- 414 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 677888887877766531100 01112468889999999999999999999999999999888
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|++.+++++....+|..+++.+.....+..+|...|...++..++..++++..
T Consensus 415 --~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 415 --MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877666678877776666555555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.8e-06 Score=70.51 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHH
Q 035554 401 RVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALS 480 (562)
Q Consensus 401 ~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~ 480 (562)
.+..+.++..++.+..... .+.+......++.+++.+...+..+.+..|..|++.|++.+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T TIGR00880 30 VLLVGLFIFVLSTAMFALS-----------------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLM 92 (141)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHH
Confidence 4455555555555554432 34556677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035554 481 MSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCA 542 (562)
Q Consensus 481 ~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 542 (562)
++...+|..+++.+.+.+.+. .++...|.+.+++.++..+..+...
T Consensus 93 ~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 93 SAGIALGPLLGPPLGGVLAQF----------------LGWRAPFLFLAILALAAFILLAFLL 138 (141)
T ss_pred HHhHHHHHHHhHHhHHHHhcc----------------cchHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999888765431 1234566666666666655555443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-05 Score=84.69 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+..++...++..............|.+..+|. ....+.+.+.+.++..++.+++++++|| +|+|+++..+..+..+
T Consensus 228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAV 305 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 4555555555555555555555555566655554 3345567778888899999999999999 7999988765554444
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC--chhhhhhhhhH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED--PKEKKSKTSFY 192 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~ 192 (562)
..++..+. |. .....+++..++.|++.+...+...++.+|..+.++ .+.|+ .+..+
T Consensus 306 ~~~~~~~~---~~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~-~g~~~ 363 (460)
T PRK11462 306 ISLAMFFV---PM------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRL-TGISF 363 (460)
T ss_pred HHHHHHHh---ch------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCc-hHHHH
Confidence 33333332 11 112234444556677777777777888888776433 22222 34556
Q ss_pred HHHHHHHhHHHHHHhhhhhhcccccc
Q 035554 193 SYFYIALNLGCLFSETVLVYAENMGY 218 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~~~~~ 218 (562)
+.......+|..+++.++|++.+..|
T Consensus 364 a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 364 AGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77778888888888888777654333
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-07 Score=96.61 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=116.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchh
Q 035554 360 ASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSI 439 (562)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (562)
+.++....+...++.|+.+.+ .+|++| .+.++.|..+..++++..++. ...
T Consensus 71 Gll~~vf~v~~~i~sPl~gyL----adryNR--------~~v~~vG~~iW~~Av~~~~fs-----------------~~F 121 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYL----ADRYNR--------KRVIAVGIFIWTLAVFASGFS-----------------NHF 121 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHH----HhhcCc--------ceEEeeHHHHHHHHHHHHHHH-----------------HHH
Confidence 455555566666777777733 345543 346788999999999888776 345
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchh
Q 035554 440 FWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGH 519 (562)
Q Consensus 440 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~ 519 (562)
|.++++=.+.|+||+...|...+++.+..|...||+..++++++...|+.+|....+.+... ..+
T Consensus 122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~---------------~~~ 186 (493)
T KOG1330|consen 122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL---------------TFW 186 (493)
T ss_pred HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC---------------ccc
Confidence 77778899999999999999999999999999999999999999999999997766554432 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhh
Q 035554 520 LDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQEG 555 (562)
Q Consensus 520 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (562)
|++.|...++++++.+++..++.++-+++..++.+.
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~ 222 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG 222 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCccccccccccc
Confidence 577888889999888888887777666554444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=82.48 Aligned_cols=164 Identities=17% Similarity=0.115 Sum_probs=132.3
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhccccc
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLL 128 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
+++++=-..+=+|--+.||.+..++.-+......+..++-.+.|++..|..++|++-..++.+.+++..+..+++...
T Consensus 222 ~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~-- 299 (403)
T PF03209_consen 222 LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG-- 299 (403)
T ss_pred HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 333333334446778889999999999999999999999999999998658899998899999999888877774322
Q ss_pred CCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 129 RPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+.+.+..+.+++|++.|.+....-+..-|+.++++ .+..++.+.....+...++..
T Consensus 300 ------------------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~ 355 (403)
T PF03209_consen 300 ------------------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTF 355 (403)
T ss_pred ------------------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999988899999988777 789999999999988888888
Q ss_pred hhhhccc----------ccchhHHHHHHHHHHHHHHHHHH
Q 035554 209 VLVYAEN----------MGYWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 209 ~~~~l~~----------~~~~~~~f~i~~~~~~~~~~~~~ 238 (562)
++|.+.| ..+|..+|.+-++.++++..++.
T Consensus 356 ~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 356 LGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 8876543 23677888888877776666543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00026 Score=74.16 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHH
Q 035554 77 FSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIY 156 (562)
Q Consensus 77 ~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (562)
..+-+....+.+++++.+.|+ +|.|..+.++...+..-.+..... +-+.++++-.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfssa 110 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSSA 110 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHHH
Confidence 556677778888999999999 899999999988877655554442 3667888999
Q ss_pred HHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 157 LFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 157 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
+.|+|.+..+.-.-.++++..+++. +.+..++.....+.+..+|..+
T Consensus 111 llG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 111 LLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred HhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHh
Confidence 9999999988888888888766555 6677777666666666655443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-05 Score=81.83 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++.-.+..|+.--.=.....+++.|+.+..|.+..+++...+.+..+.+++..++-++-.| +-..|.+.+.++..++
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~il 314 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAIL 314 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHH
Confidence 556666666666655556677889999999899999999999999999999999999999999 7999999988776666
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
-.+...++. ...-+.+.++.|+.++..+|++.+...+..|++.+ .+++
T Consensus 315 l~~~~~l~~------------------------g~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~--- 362 (422)
T COG0738 315 LLLAVALIG------------------------GVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG--- 362 (422)
T ss_pred HHHHHHHhc------------------------ChHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce---
Confidence 555555541 13344556678999999999999999999995542 2222
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHH-HHHHHHHHH
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFW-ICAGCDILA 233 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~-i~~~~~~~~ 233 (562)
.-...-+|+++-|.+-|++.|..+-...+. ++.+|.+..
T Consensus 363 ~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 222345899999999999999888776665 455554433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-05 Score=75.03 Aligned_cols=166 Identities=8% Similarity=0.005 Sum_probs=108.8
Q ss_pred HHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccC
Q 035554 50 AFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLR 129 (562)
Q Consensus 50 ~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
..|..-. ....+++.+|+|.+|...+-....++..++ ++.|.+.|+ +|.+.++.+|.+...+|+.++..+-+ .
T Consensus 17 t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~--~-- 89 (250)
T PF06813_consen 17 TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVS--G-- 89 (250)
T ss_pred cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHh--C--
Confidence 3344432 345578899999999999999999999876 789999999 79999999999999999988877621 0
Q ss_pred CCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 130 PHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
.......|.+.+..++.+.+.+....+......+-|| ++ ||.+.++.-....+++.+-..+
T Consensus 90 ------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~------RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 90 ------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RS------RGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred ------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cc------cCceehhhhHHHHhHHHHHHHH
Confidence 1112346666666667667766655555555557787 46 7899888666666655554434
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 210 LVYAENMGYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 210 ~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
...+.+.-.-...+.++....+++++...+.+
T Consensus 151 ~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 151 YSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 43333322223333444444444444444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-05 Score=82.35 Aligned_cols=169 Identities=14% Similarity=0.007 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...+..++....++......|.|+++.+|++..+.++.......+..++..+.+.+.++ .+++|.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHH
Confidence 567777777777788888888888999999999999999998877788888877777776655 3555554444444444
Q ss_pred HHHHHHhhhc-ccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQ-SFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+..++..... .+. ..+..+++.++.++|.+...|+.....- .+.+.+ ++++.+
T Consensus 297 g~~l~~~~~~~~~~-------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~a 350 (413)
T PRK15403 297 GLALLIVGNLLWPH-------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVSA 350 (413)
T ss_pred HHHHHHHHHHHccc-------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHHH
Confidence 4444333210 011 2334567888888998888888775332 332222 567778
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDI 231 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~ 231 (562)
+++.....+...++...+++... +-.++|.+..++..
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 351 SLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 87888888888888888888654 44666665554443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-05 Score=75.28 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=92.6
Q ss_pred HHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCc
Q 035554 60 LFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQL 139 (562)
Q Consensus 60 ~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (562)
.|+-++.|+...+.|.++-+.....+++..+.|-|+|| .|||+..+..++.+ .+.++.-..|
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitY----iLsCiTKhSp------------- 122 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITY----ILSCITKHSP------------- 122 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHH----HHHHHhhcCC-------------
Confidence 45667789999999988877777777777889999999 79999876655444 4555542222
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccchhhhhhhh-hccCCCCCchhhhhhhhhHHH-HHHHHhHHHHHHhhhhhhccccc
Q 035554 140 CDPHSPAETAIFYISIYLFALGIGAPEPALATFG-ADQFDEEDPKEKKSKTSFYSY-FYIALNLGCLFSETVLVYAENMG 217 (562)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~~~~~~~~~l~~~~ 217 (562)
++-.++++|.+-|+..+..+.+..+.. +|.-+.++-.+.+ ...-++= ....+.+-+.++...+-.+.++.
T Consensus 123 -------qYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqW-ls~TFskA~ffgNglvAiiaGlfgn~lvd~~ 194 (454)
T KOG4332|consen 123 -------QYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQW-LSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF 194 (454)
T ss_pred -------ceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhh-hhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 355689999999999988777766644 3332221111110 0011111 11223334444444555555544
Q ss_pred --chhHHHHHHHHHHHHHHHHHH
Q 035554 218 --YWVLGFWICAGCDILAFSSLL 238 (562)
Q Consensus 218 --~~~~~f~i~~~~~~~~~~~~~ 238 (562)
|-..+|-.+++..+++..+.+
T Consensus 195 slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 195 SLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred ccCCCCchHHHHHHHHHHHHHHH
Confidence 456677766666666655544
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-05 Score=76.06 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=112.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCCCh--hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhh
Q 035554 46 LANLAFAGVEVNMVLFAKSVLRQTN--AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFAT 123 (562)
Q Consensus 46 ~~~~~~~~~~~~~~~y~~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~ 123 (562)
.............+.+..+ ++.+. ...++..+.+.+...++.++.|+++|| .|||+.+..+.....++.+.+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T COG0477 13 LLGLDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAP 90 (338)
T ss_pred HHHHhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCc
Confidence 3333333444445554443 44444 578899999999999999999999999 6999888888776555555554441
Q ss_pred cccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCC-CCchhhhhhhhhHHHHHH-HHhH
Q 035554 124 QSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDE-EDPKEKKSKTSFYSYFYI-ALNL 201 (562)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~l 201 (562)
. ...+.+++.|...|++.+...+...+++.|.+|+ ++ |+...+.... ...+
T Consensus 91 ~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 143 (338)
T COG0477 91 N---------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGAL 143 (338)
T ss_pred c---------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHH
Confidence 1 2377788899989999999999999999999886 33 7788888777 5778
Q ss_pred HHHHHhhhhhhcccc--cchhHHHHHHHHHH
Q 035554 202 GCLFSETVLVYAENM--GYWVLGFWICAGCD 230 (562)
Q Consensus 202 g~~~~~~~~~~l~~~--~~~~~~f~i~~~~~ 230 (562)
|..++|.+++.+... .+|+..|.+.....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 144 GLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 888888776666543 57888666555444
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00021 Score=74.77 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHH
Q 035554 401 RVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALS 480 (562)
Q Consensus 401 ~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~ 480 (562)
.+..|+.+..+=++.+... .|+|..++.-++-|+..+.+..+.-+++...+|++++.+++|+.
T Consensus 438 v~~lgLa~~~~Rf~~~S~L-----------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~ 500 (618)
T KOG3762|consen 438 VMYLGLACNVGRFLYYSYL-----------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLL 500 (618)
T ss_pred eeeehhhHHHHHHHHHHHh-----------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHH
Confidence 4556666666666665554 46677777889999999999999999999999999999999997
Q ss_pred HHHH-HHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035554 481 MSST-AIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCA 542 (562)
Q Consensus 481 ~~~~-~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 542 (562)
.... ++|-.+|+.+.|.+.+. .+....|...++.+++..+.+..+-
T Consensus 501 ~g~f~GlG~g~GslIGG~~v~~----------------fg~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 501 QGIFHGLGKGLGSLIGGFVVER----------------FGARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred HHHhcccCcchhhhhhhhhhee----------------ehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5444 77777777776655442 1224566776766666655555443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=85.97 Aligned_cols=172 Identities=16% Similarity=0.058 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc--chHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLG--RYLTCVTFQAFSI 113 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rk~~i~~~~~~~~ 113 (562)
.++...+..-..+.+.-..-+.+++++.+.+..+..+.|....-..+.+.+++.+.|.++|| ++ |...-..+++...
T Consensus 271 ~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl~~~G 349 (464)
T KOG3764|consen 271 YILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGLATVG 349 (464)
T ss_pred hHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHHHHHH
Confidence 44555555555566666777889999999999777899999999999999999999999999 69 5444444444444
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
.......++ .+...+++-+...+++.+....+..+....+.+.++.++-...+..++
T Consensus 350 ~~~~~iP~~-----------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVya 406 (464)
T KOG3764|consen 350 VSSGPIPFA-----------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYA 406 (464)
T ss_pred HHhchhHhh-----------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHH
Confidence 333333333 135557777777788888887888888888777655331112678899
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDI 231 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~ 231 (562)
+...+..+|..+||.++|.+.+..|++|...+.++.-+
T Consensus 407 Iad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~ 444 (464)
T KOG3764|consen 407 IADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNL 444 (464)
T ss_pred HHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHH
Confidence 99999999999999999999999999887665555433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.7e-05 Score=83.22 Aligned_cols=175 Identities=10% Similarity=-0.070 Sum_probs=115.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHH--hhCCCh------hhhhhHHHHHHHHHHHHHHHH----HHHhhhcccchHHHHHHHHH
Q 035554 44 QGLANLAFAGVEVNMVLFAKS--VLRQTN------AEASNTFSRWMGSLYLSSLMG----AFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~--~lg~s~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grk~~i~~~~~~ 111 (562)
.++....+|.+..-++.++.. ..+.+. ...+++.+...+...+..++. +++.|| ++..+.+.+|.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHH
Confidence 335556666666666666543 111111 125566666666666776676 555666 4666888899999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++.+.+........ +....+.+++.+..+++++|.+...|...+++.+..|++. |++.
T Consensus 360 ~~l~f~~l~~~~~~~~--------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~ 419 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN--------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFI 419 (500)
T ss_pred HHHHHHHHHHHHHhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHH
Confidence 9999888777632111 1112346688889999999999999999999999999888 9999
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcc----------cccchhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSYFYIALNLGCLFSETVLVYAE----------NMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~----------~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
++.+.....+|..++..+..... ...++...|...++..++..++++.
T Consensus 420 ~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 420 MGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888877766654321 1123666776655544433333333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00073 Score=69.76 Aligned_cols=157 Identities=18% Similarity=0.099 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHh-hCCChhhhh-hHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 54 VEVNMVLFAKSV-LRQTNAEAS-NTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 54 ~~~~~~~y~~~~-lg~s~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
.-+++..|+.+. .|++..|.. -+.-+..=.....-++...+.|. +|-|++++++.+...+...++.+..
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~-------- 92 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT-------- 92 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC--------
Confidence 346778899887 899998865 44444555666777889999998 7999999999888888888877763
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhh
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLV 211 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~ 211 (562)
+...+-+.-+..|++.+. ..+..+++-...|+++ -.++.++...+.-+|..++..++-
T Consensus 93 ---------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 93 ---------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred ---------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255566777777777665 5666677766666554 456677777777777777776665
Q ss_pred hccc--ccchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 212 YAEN--MGYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 212 ~l~~--~~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
.+.. ..++...+++......++++..++.+
T Consensus 151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 151 LLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5543 34677788888877777766655443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.2e-05 Score=83.37 Aligned_cols=150 Identities=11% Similarity=0.025 Sum_probs=105.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhCCCh----hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHH-------HHHHHHHH
Q 035554 44 QGLANLAFAGVEVNMVLFAKSVLRQTN----AEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLT-------CVTFQAFS 112 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~y~~~~lg~s~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~-------i~~~~~~~ 112 (562)
..+....+......++.|.++..+.+. ....++.+...+...+..++.|++.|| +|+|+. +.+|.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHH
Confidence 444556666666788888875333221 123445555566777888889999999 798873 77787777
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
+++.+.++....... +.....+.+++....++.|+|.+...|...+++.+..|++. ++.+.
T Consensus 357 ~~~~~~~~~~~~~~~-------------~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~ 417 (489)
T PRK10207 357 SLGFLTAAAAGMWFA-------------DAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFIL 417 (489)
T ss_pred HHHHHHHHHHHHhhc-------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHH
Confidence 777654432100000 00012346777788889999999999999999999999887 88999
Q ss_pred HHHHHHHhHHHHHHhhhhhhc
Q 035554 193 SYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l 213 (562)
++++...++|..++..++.+.
T Consensus 418 g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 418 GMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988777554
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.7e-06 Score=89.36 Aligned_cols=147 Identities=9% Similarity=-0.121 Sum_probs=112.1
Q ss_pred HHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCC
Q 035554 63 KSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDP 142 (562)
Q Consensus 63 ~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (562)
++.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++.+++.+...+..+-..+. ..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~-~g---------- 347 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLA-FG---------- 347 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccc-cC----------
Confidence 45799999999999999999999999999999999 7999999999998888776543221001000 00
Q ss_pred CCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccc----
Q 035554 143 HSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGY---- 218 (562)
Q Consensus 143 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~---- 218 (562)
-...+.....-++.+++.+....+...++.+..|++. +++.++++....|+|..+++.+++++.+..|
T Consensus 348 --i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~ 419 (468)
T TIGR00788 348 --ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCD 419 (468)
T ss_pred --CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 0112234445567788888888888999999999988 8999999999999999999999999988766
Q ss_pred -hhHHHHHHHHH
Q 035554 219 -WVLGFWICAGC 229 (562)
Q Consensus 219 -~~~~f~i~~~~ 229 (562)
++..+.+..++
T Consensus 420 ~~~~~~~~i~i~ 431 (468)
T TIGR00788 420 NSNNLWLLILGH 431 (468)
T ss_pred cccchHHHHHHH
Confidence 55554443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.7e-05 Score=81.80 Aligned_cols=208 Identities=11% Similarity=-0.084 Sum_probs=141.2
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCChh-----h-----hhhHHHHHHHHHHHHHHHHHHHhh
Q 035554 28 KDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKS-VLRQTNA-----E-----ASNTFSRWMGSLYLSSLMGAFLSD 96 (562)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~-~lg~s~~-----~-----~~~~~~~~~~~~~~~~~~~G~laD 96 (562)
+..++.||.++.+...+++.+++++.+..+.+.|+.+ .++-++. + ..+....+.+...+..++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999875 4553321 1 223344455555677777888999
Q ss_pred hcccc-hHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhh
Q 035554 97 SYLGR-YLTCVTFQAFSIIGLLGLSFATQSFL-LRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGA 174 (562)
Q Consensus 97 r~~Gr-k~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 174 (562)
+ +|+ |++..++.++.+++.....+.+++++ .. +.++-++.. .+.....+..++...+.|+..+.....=.++++
T Consensus 331 ~-~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s 406 (477)
T TIGR01301 331 G-WGAGKRLWGIVNIILAICLAATVLVTYVAKNSR--YYDGDGESL-PPPTGIKASALIVFAILGIPLAITYSIPFALAS 406 (477)
T ss_pred H-hccchhHHHHHHHHHHHHHHHHHHHHhhhhccc--ccccccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 9 795 67778888888888887776533211 00 000000000 010111356667777889999888888889999
Q ss_pred ccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccc--hhHHHHHHHHHHHHHHHHHHhcCcc
Q 035554 175 DQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGY--WVLGFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 175 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~--~~~~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
+..++++ ++.|..++++|.++.+.-.+..+..|.+.+..| -...+.+.++..+++.++.+...|+
T Consensus 407 ~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 407 IRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 9887543 116899999999999999888877776554433 4567788888887777766655554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=60.84 Aligned_cols=69 Identities=14% Similarity=0.048 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 42 VNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
...++...+.-.+.++++.|+++ .|++..++|.+.++..+...+++++.|+++|| .|++|.++....+.
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 34455556666788999999985 99999999999999999999999999999999 69998888765543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.3e-05 Score=81.54 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i~~~~~~ 111 (562)
..+|...++.++.....|+...++|.|+++-.|+|..+++.+...+.+++.++.+++|+++||. ..+|..+.....+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4788999999999999999999999999996779999999999999999999999999999992 2455555555544
Q ss_pred HHH-HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SII-GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+.+ +...+..... ......+......+.+...++...-..+-...+. | |..
T Consensus 353 ~~~~g~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----k-~~~ 404 (495)
T KOG2533|consen 353 YAIIGAISLLAAAV-----------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----K-ALT 404 (495)
T ss_pred HHHHHHHHHHhhcc-----------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH----H-hHH
Confidence 433 4344333211 1112222222223333333444444444332222 2 455
Q ss_pred hHHHHHHHHhHHHHHH-hhhhhhcccccchhHHHHHH
Q 035554 191 FYSYFYIALNLGCLFS-ETVLVYAENMGYWVLGFWIC 226 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~-~~~~~~l~~~~~~~~~f~i~ 226 (562)
..+.+..+.+.++.++ ++.-+.....++|...|...
T Consensus 405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 405 TVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 5555555555544444 44445555567888888433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.045 Score=58.27 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCC-----hhhhhhHHHHHHHHHHHH-HHHHHHHhhhcccchHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT-----NAEASNTFSRWMGSLYLS-SLMGAFLSDSYLGRYLTCVT 107 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grk~~i~~ 107 (562)
+|.++...+..+|..+.|+.+.+ +++.+..+ .....++.+...+...+. .++-+++++| ++|+|.+.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHH
Confidence 46788888888999999888877 67777663 245666666655554444 7889999999 799999988
Q ss_pred HHHHHHHHHHHHHhhhcccccC---CC-CCCCCCCcCCC-CC----------CchHHHHHHHHHHHHHhcccchh-hhhh
Q 035554 108 FQAFSIIGLLGLSFATQSFLLR---PH-GCGKIGQLCDP-HS----------PAETAIFYISIYLFALGIGAPEP-ALAT 171 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~-~~----------~~~~~~~~~~~~l~g~g~g~~~~-~~~~ 171 (562)
....++.-.++..+.- .|.-. |+ .+|+ .... +. ......+++..-+.+. .... ...+
T Consensus 80 ~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~---~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~---~vvS~lFW~ 152 (472)
T TIGR00769 80 VISPFLGFFALFAFVI-YPLSDLLHPTALADK---LLSLLPPGFMGFIAILRIWSFALFYVMAELWGS---VVLSLLFWG 152 (472)
T ss_pred HHHHHHHHHHHHHHHH-hcchhhcCCcHHHHH---HHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7776666555544431 12200 00 0000 0000 00 0011133333333222 2232 6788
Q ss_pred hhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcc
Q 035554 172 FGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAE 214 (562)
Q Consensus 172 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~ 214 (562)
+..|.+..++ -.|.+++++.+.|+|..+++.+..++.
T Consensus 153 fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 153 FANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998777 669999999999999999998888875
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.038 Score=57.25 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILS 496 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~ 496 (562)
.++|.+.+..+..|+-.+..+......+.+..|++.|..++|...+.-.+|..+++.+.-
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 466777778888899999999999999999999999999999999999999988876543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.5e-07 Score=100.47 Aligned_cols=182 Identities=15% Similarity=-0.010 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
+.....+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.|| +|||+.++.+..+.++
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccc
Confidence 3444444445455444444444444555556676666 222223345566777788899999 7999999999888777
Q ss_pred HHHHHH-hhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 115 GLLGLS-FATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+.+.+. .....+. .+.......+...............+....+..|.+|++. |.++.+
T Consensus 329 ~~~~~~~~~~~~~~--------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~ 388 (451)
T PF00083_consen 329 CSLILGIIFFLGVS--------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIG 388 (451)
T ss_pred cccccccccccccc--------------cccccccccceeeeeccccccccccccccccccccccccc------cccccc
Confidence 776664 1100010 0000011111111111111222334566688899999999 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+.+....+++.+++.+...+.+..+-...|.+.+.+.++..+..+.
T Consensus 389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~ 434 (451)
T PF00083_consen 389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF 434 (451)
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence 9999999999999988888877665344555555544444444333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.2e-05 Score=77.22 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=124.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHHH-HHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSY---LGRYLTCVT-FQA 110 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grk~~i~~-~~~ 110 (562)
+.++.+....+...+++-.=..++++|++ .+|++..-.+.+-.+.-+.+.+.+|+.|..+||. +||||-++. +.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 67777777777777888877888889887 5899999999999999999999999999999986 788887764 455
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCC----chHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSP----AETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKK 186 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (562)
..+++.++..+++.+-. -.|++... ....+++++.-+.=+.+-..+.++-++.+|+...+++
T Consensus 111 ~i~~~l~Lig~aaDig~----------~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~---- 176 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGL----------LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK---- 176 (498)
T ss_pred HHHHHHhhhhhHhhhhH----------HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh----
Confidence 67778888777743221 12222222 3556777788788888878889999999999866552
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhhhc
Q 035554 187 SKTSFYSYFYIALNLGCLFSETVLVYA 213 (562)
Q Consensus 187 ~r~~~~~~~~~~~~lg~~~~~~~~~~l 213 (562)
+.++.+++...+.+|+.+|-..+++.
T Consensus 177 -~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 177 -KTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred -hhccchhHHHHHHhcceeeeeccccc
Confidence 12288889999999998887776654
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=80.32 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=104.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhc--------
Q 035554 359 PASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRR--LKYAS-------- 428 (562)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~--~~~~~-------- 428 (562)
.+.+.+.+.+...+..+++. .+.+|.+| .+.+.+|.++++++.+++++.+-.. +++..
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~----~~~~r~~r--------~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~ 137 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVS----YFGTKLHR--------PIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL 137 (633)
T ss_pred ceeeeehhhHHHHHHHHHHH----HhhcccCc--------ceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence 34555555555555555555 23335433 2256788888888888877654211 11100
Q ss_pred -----c-----------------CCCCCc--cchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHH
Q 035554 429 -----F-----------------GGEETS--SLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSST 484 (562)
Q Consensus 429 -----~-----------------~~~~~~--~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~ 484 (562)
. +|+... ......+++.-++.|+|++...+...+++.|.+|++.|+++.|++....
T Consensus 138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~ 217 (633)
T TIGR00805 138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA 217 (633)
T ss_pred cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence 0 000000 1134456678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhcCC------------CCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 035554 485 AIGTYVCSMILSVVMVLTTKNG------------KPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVC 541 (562)
Q Consensus 485 ~lg~~lg~~l~~~i~~~~~~~~------------~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 541 (562)
.+|..+|+.+.+.+.....++. ++.| .+.|...|.+.+++.++..+.++++
T Consensus 218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW------iGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW------IGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH------HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998887665332110 0111 1234555777777666655544443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00019 Score=75.12 Aligned_cols=169 Identities=9% Similarity=-0.070 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 035554 41 LVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLS 120 (562)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~ 120 (562)
++..+...++.-.+.+++--+++ +++-.+...|........+-++.-++.+++..| +|+-+++..+++...+=++..+
T Consensus 377 f~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHH
Confidence 33334444444445555544444 456566666766666677777888899999999 7999999999999888887777
Q ss_pred hhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH-HHHHH
Q 035554 121 FATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY-FYIAL 199 (562)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 199 (562)
... +.|+.+..-+++|+..+..+.++.+++.+..|++- |.++-++ ....-
T Consensus 455 ~L~-----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~ 505 (618)
T KOG3762|consen 455 YLQ-----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFH 505 (618)
T ss_pred Hhc-----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhc
Confidence 762 37778888899999999999999999999999888 7788877 44445
Q ss_pred hHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 200 NLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 200 ~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+|-.+|.+++|.+.+.+|-+..|.+.++..++.++.+...
T Consensus 506 GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 506 GLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred ccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999998888888888777666665554443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.6e-05 Score=77.03 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhh--------HHHHHHHHHH-HHHHHHHHHhhhcccchHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASN--------TFSRWMGSLY-LSSLMGAFLSDSYLGRYLTC 105 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~--------~~~~~~~~~~-~~~~~~G~laDr~~Grk~~i 105 (562)
+.++......|+.-.++|+...+...-++ ..|+.+.+... ...+....+. -+..++.++.|+ +|||+..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence 45556666777777888888766655444 45554433222 2222222222 255677889999 8999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHH-HHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETA-IFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
+.|.+++.+..+.++.. ++ | ..+...+. ...+..++..+| ...+...+.+|.||++.
T Consensus 382 ~~GF~~~~i~~~~~~~~---y~----------~---~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParv--- 439 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGP---YN----------Q---LENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARV--- 439 (538)
T ss_pred HhhHHHHHHHHHHHcCC---cc----------c---ccccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHH---
Confidence 99999998888777664 11 0 11112222 222333333444 34455667789999988
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHhhhhhhccc-----ccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 185 KKSKTSFYSYFYIALNLGCLFSETVLVYAEN-----MGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 185 ~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~-----~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
|+...++-....-+|+.++.....++.+ ..+.+..|++.+.++.++.+.-++.
T Consensus 440 ---R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 440 ---RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred ---hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 9999999888889999999988888888 6788999999999888777654443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.12 Score=54.36 Aligned_cols=190 Identities=13% Similarity=-0.081 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+.+-...++.+..--+...-.+.|+.+-+.-+.--.+..-.+-.+...++.+..|...|| ..|.|++..+.+..-+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNL 80 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHH
Confidence 456677778888877777777788888887655455445554455567777888899999999 6999998887665333
Q ss_pred HHHH----HHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 115 GLLG----LSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 115 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..+ +...-..+.. ...++.....++.+..++-++..-+......+.=.|+...=..+.+..+.+
T Consensus 81 sv~~s~~~~~~l~~~~~~-----------~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~ 149 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPSS-----------SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALAR 149 (432)
T ss_pred HHHHHHHHHHHHHhCCcc-----------ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHH
Confidence 2222 1111110110 000001111122222222223322222333333455533211001111223
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSS 236 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~ 236 (562)
.-+...-.=-+--.++|++.|.+....+......+.++.-++++.+
T Consensus 150 ~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 150 MNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 3333222334467789999999988788877766666666666554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=66.72 Aligned_cols=152 Identities=13% Similarity=0.029 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFA-KSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGR-YLTCVTFQAFSI 113 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-k~~i~~~~~~~~ 113 (562)
..+..+....+.+.-.|...-+...++ .+.+|+++.|+|-+++...+.+.+.+..-....||..|. +-.+..++.+..
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 445555555555555555555555555 356999999999988887777777777777777774333 334445555555
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
-..++...+ + ....++++..+-.+..+...++...++....|.++ |+...+
T Consensus 341 P~~llls~~---~--------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~G 391 (451)
T KOG2615|consen 341 PAFLLLSLA---R--------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNG 391 (451)
T ss_pred HHHHHHhcc---c--------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHH
Confidence 555555554 1 24568888999999999999999999999999888 999999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccc
Q 035554 194 YFYIALNLGCLFSETVLVYAENM 216 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~ 216 (562)
+......++-++||.++|.+..+
T Consensus 392 i~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 392 IFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHHHHhhhhhhheeEEE
Confidence 99999999999999999888653
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0022 Score=69.79 Aligned_cols=151 Identities=13% Similarity=-0.051 Sum_probs=86.0
Q ss_pred CchHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGL-ANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 33 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
.+|..........+ ...++..+..+.+..+ +..|.+... .+...+..+...++..++.++.|| +|||+.++.+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHH
Confidence 44545444444444 4444455555555554 455665443 444445566777777888999999 7999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHH--HHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFY--ISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKT 189 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 189 (562)
+.++.+++........ ++. . ......++.+ +......+. ....|....+..|.+|.+- |+
T Consensus 369 m~~~~~~~~~~~~~~~---------~~~-~-~~~~~~~~~~~~~~~~v~~f~-~g~g~v~w~~~sEifp~~~------r~ 430 (513)
T KOG0254|consen 369 MSICLVILAVVGVFAL---------YYP-N-SSKGAGWLAIVFLCLFIFSFA-IGWGPVPWVIVSEIFPLRL------RS 430 (513)
T ss_pred HHHHHHHHHHHHHHhc---------cCC-C-cccchhHHHHHHHHHHHHHHh-cccccchhhhhhccCcHhH------Hh
Confidence 9999888776522111 000 0 0011112222 222222333 2334455568899999887 77
Q ss_pred hhHHHHHHHHhHHHH
Q 035554 190 SFYSYFYIALNLGCL 204 (562)
Q Consensus 190 ~~~~~~~~~~~lg~~ 204 (562)
.+.++....+.+...
T Consensus 431 ~~~s~~~~~n~~~~~ 445 (513)
T KOG0254|consen 431 KGASLAVAVNWLWNF 445 (513)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777774444444333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0043 Score=65.26 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHH
Q 035554 400 QRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIAL 479 (562)
Q Consensus 400 ~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl 479 (562)
+.+..+.+..++..++.++. .+.+.+.+.-+++|++|+... +...++++.+|++.|++++|+
T Consensus 93 ~vL~l~~l~Wsl~t~L~~fa-----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi 154 (511)
T TIGR00806 93 PVLVLQALSFVCVWLLLLLG-----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAY 154 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHH
Confidence 36677777777777777775 356778889999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035554 480 SMSSTAIGTYVCSMILSV 497 (562)
Q Consensus 480 ~~~~~~lg~~lg~~l~~~ 497 (562)
++....+|.++++++.+.
T Consensus 155 ~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 155 SRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999887
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0063 Score=65.27 Aligned_cols=155 Identities=6% Similarity=-0.082 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-----CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch-H------H
Q 035554 37 GTLLLVNQGLANLAFAGVEVNMVLFAKSVL-----RQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY-L------T 104 (562)
Q Consensus 37 ~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l-----g~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk-~------~ 104 (562)
...+++...+-+..|.=..+.+..|.++.. |+. ...++..+...+...+..|+.+++=.| .+|| | =
T Consensus 270 ~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~~~K 347 (493)
T PRK15462 270 IVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRIWGK 347 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCcHHH
Confidence 334444444445555556677777776643 332 236677777778778888888888777 5432 2 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 105 CVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
+.+|+++..++++.+.++..... ++...+.+++++..+++++|.-+..|...++++++.|++-
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~~--------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~--- 410 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWSA--------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV--- 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC--------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH---
Confidence 66788888888877776532111 1112467788888999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHH-hHHHHHHhhhhhhc
Q 035554 185 KKSKTSFYSYFYIAL-NLGCLFSETVLVYA 213 (562)
Q Consensus 185 ~~~r~~~~~~~~~~~-~lg~~~~~~~~~~l 213 (562)
++..++.+.... .+|..++..+.++.
T Consensus 411 ---~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 411 ---TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999987644 67777776666655
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.004 Score=67.75 Aligned_cols=154 Identities=11% Similarity=-0.064 Sum_probs=108.8
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChh---hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Q 035554 29 DRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNA---EASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTC 105 (562)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i 105 (562)
++.+++|.+...++..++....+|++..+.|....+.++-|.. +.++....+.++..++.++.|.+.-+ ++|-|..
T Consensus 304 ~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~ 382 (599)
T PF06609_consen 304 RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQ 382 (599)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHH
Confidence 3445567888888888999989999988899888887776653 56777788888899999999999988 6876655
Q ss_pred -HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 106 -VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
+++.+++.++..+++... |. + ....+...++.|+|.|...........-..|+++
T Consensus 383 li~~~~~~ta~~Gama~~~--~~-----------------n--~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~--- 438 (599)
T PF06609_consen 383 LIFGSVLMTAFCGAMAAVR--PD-----------------N--KNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED--- 438 (599)
T ss_pred HHHHHHHHHHHHHHHHHcc--CC-----------------C--cchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH---
Confidence 466666665555544331 11 1 2223445567778877766555555544456666
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHhhhh
Q 035554 185 KKSKTSFYSYFYIALNLGCLFSETVL 210 (562)
Q Consensus 185 ~~~r~~~~~~~~~~~~lg~~~~~~~~ 210 (562)
.+.+.++......+|+.++..+-
T Consensus 439 ---ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 439 ---IGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHH
Confidence 88888888888888888776543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=69.67 Aligned_cols=174 Identities=14% Similarity=0.038 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-CC-Chhhhhh-HHHHHHHHHHHHHHHHHHHhhhcccchH--------
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL-RQ-TNAEASN-TFSRWMGSLYLSSLMGAFLSDSYLGRYL-------- 103 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l-g~-s~~~~~~-~~~~~~~~~~~~~~~~G~laDr~~Grk~-------- 103 (562)
..+|+++...+|...+-..+..++-. +-+.+ |. ++.+... .++.+.+++.+|.+.+|+++.. .-||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N~~q-I~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFNARF-IYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeecHHH-HHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchh
Confidence 47899999988887776666666543 45567 76 3332233 7889999999999999999833 23333
Q ss_pred -HHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCc
Q 035554 104 -TCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDP 182 (562)
Q Consensus 104 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 182 (562)
.+.+..+ +.++.+++++. .| ...++++-++.|+++|..++...+...|+|. ++
T Consensus 431 ~~l~~~~~-~~~~~lll~~~--~p---------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~- 484 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLT--LP---------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD- 484 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHH--CC---------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc-
Confidence 2333333 66677766664 22 1358999999999999999999999999999 77
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHH-hhhhhhcccc-------------cchhHHHHHHHHHHHHHHHHHHhcC
Q 035554 183 KEKKSKTSFYSYFYIALNLGCLFS-ETVLVYAENM-------------GYWVLGFWICAGCDILAFSSLLSGT 241 (562)
Q Consensus 183 ~~~~~r~~~~~~~~~~~~lg~~~~-~~~~~~l~~~-------------~~~~~~f~i~~~~~~~~~~~~~~~~ 241 (562)
-+.-+++....+-+|..+- -.+.|.+.+. --++..|.+.++...++.++-....
T Consensus 485 -----~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~ 552 (591)
T PTZ00207 485 -----PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVH 552 (591)
T ss_pred -----hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhee
Confidence 6788888888888887764 3455555431 1277888888777777766644443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0075 Score=54.00 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHH
Q 035554 75 NTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYIS 154 (562)
Q Consensus 75 ~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (562)
.-.++......+.+++++.+.++ +|.|+.+++|.+.+.+-...... | +.+.++.+
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~----~--------------------~~~~l~~~ 95 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY----P--------------------NSYTLYPA 95 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh----h--------------------hHHHHHHH
Confidence 33445566677777888889999 89999999998887754433222 2 36678888
Q ss_pred HHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhh
Q 035554 155 IYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETV 209 (562)
Q Consensus 155 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~ 209 (562)
-.+.|++.+..+.+...++.+..++++ +++..+++....+.+..+|.++
T Consensus 96 s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 96 SALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766555 6777777777777766666544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.09 Score=53.24 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=95.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhh-----hcccchHH
Q 035554 30 RTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSD-----SYLGRYLT 104 (562)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laD-----r~~Grk~~ 104 (562)
.++..+++.++++..... ..-+|+...+|..++ .-|.|-++.+.....+. =+---++...+.| | +||||.
T Consensus 26 ~~~d~~~illLl~LYllQ-GiP~GL~~~iP~lL~-ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~-~Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQ-GIPLGLIGAIPLLLQ-AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKR-FGRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHc-CCchhHhhhhHHHhc-CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHh-hccccc
Confidence 345556777777666655 445666666666666 45777777664333221 1122345666777 8 899997
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 105 CVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
-++=+ -+.+|.++..++...+. ..+ ++...+....+....++..+..+....++-...-.+..+++
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~----~~g------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--- 166 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDR----GLG------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--- 166 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCc----ccc------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh---
Confidence 55332 12334444444421111 111 12223334444455566677777777788888888887777
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHhhhh
Q 035554 185 KKSKTSFYSYFYIALNLGCLFSETVL 210 (562)
Q Consensus 185 ~~~r~~~~~~~~~~~~lg~~~~~~~~ 210 (562)
.+.+.+.+..+.+.|.+++..+.
T Consensus 167 ---lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 167 ---LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred ---cCchhHHHHHHHhhhHHhhccee
Confidence 88898899999999999886544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=69.39 Aligned_cols=149 Identities=21% Similarity=0.115 Sum_probs=114.1
Q ss_pred hHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHH-HHhhhcccchHHHHHHHHHH
Q 035554 35 RCGTL-LLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGA-FLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~-l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grk~~i~~~~~~~ 112 (562)
|..+. .+...+..-.-.-+-...++.|++..++++..+.+...+...+...++.++.. .+.-. +|-|+++..|++..
T Consensus 240 r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~ 318 (463)
T KOG2816|consen 240 RLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSE 318 (463)
T ss_pred ccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHH
Confidence 44444 33333333333333332446788889999999999999999999999988877 77777 89999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhH
Q 035554 113 IIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFY 192 (562)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 192 (562)
.+..+..+++. +.|.++....+. ...+...|...++.+.+.+.++ +++.+
T Consensus 319 ~~~~~~~af~~-----------------------~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~e------~g~v~ 368 (463)
T KOG2816|consen 319 FLQLLLFAFAT-----------------------ETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPEE------QGKVF 368 (463)
T ss_pred HHHHHHHHHhc-----------------------cchhhhHHHHHH-HhhcchhHHHHhHHHhhccccc------ccchh
Confidence 99999998872 255566666554 4556778999999999999888 99999
Q ss_pred HHHHHHHhHHHHHHhhhhhhcc
Q 035554 193 SYFYIALNLGCLFSETVLVYAE 214 (562)
Q Consensus 193 ~~~~~~~~lg~~~~~~~~~~l~ 214 (562)
++......+.+.++|.+-+.+.
T Consensus 369 ~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 369 GIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999999988776653
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0059 Score=48.28 Aligned_cols=72 Identities=7% Similarity=-0.060 Sum_probs=61.8
Q ss_pred HHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhh
Q 035554 49 LAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFA 122 (562)
Q Consensus 49 ~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~ 122 (562)
++.+..++.+|. ++++.++|..+.|++-+...+++.++.+...++.++ ..+++.+..++++..+..+.+.+.
T Consensus 6 igRFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 6 IGRFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hHHHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555565554 677899999999999999999999999999999998 688899999999999899888876
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.092 Score=56.95 Aligned_cols=172 Identities=16% Similarity=0.033 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHHHH-HHHHH
Q 035554 40 LLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV-TFQAFS-IIGLL 117 (562)
Q Consensus 40 l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~-~~~~~~-~~~~~ 117 (562)
+....++..++..+......-.+...+|-+..+.+.+++++..+..++..++|+++++ .-|+...+ ++..+. .++..
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~~~e~~i~l~~~~~~~ 97 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFVAVELLLALLGGLSAL 97 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556655555666666777789899999999999999999999999988755 23332222 111111 11111
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
++.....+.. .....++...++.++..|+..|....+..+... ++ -++..+-.|.
T Consensus 98 ll~~~~~~~~------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~ 152 (521)
T PRK03612 98 ILYAAFAFQG------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLA 152 (521)
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHh
Confidence 1111110000 011222333445667777777776666554221 12 2345566677
Q ss_pred HHhHHHHHHhhhhhhccc-ccch-hHHHHHHHHHHHHHHHHH
Q 035554 198 ALNLGCLFSETVLVYAEN-MGYW-VLGFWICAGCDILAFSSL 237 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~-~~~~-~~~f~i~~~~~~~~~~~~ 237 (562)
...+|+++|.++.+++.- ..|- ...+.++.+..+++++++
T Consensus 153 ~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 153 ADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 777888888777776543 4453 344444444444444333
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0051 Score=64.93 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=126.9
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHH-HHHHHH-HHHHHHHhhhc--ccchH
Q 035554 28 KDRTGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWM-GSLYLS-SLMGAFLSDSY--LGRYL 103 (562)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~-~~~~~~-~~~~G~laDr~--~Grk~ 103 (562)
+..+..|+..+.+++..+...+.+..+.+..+.+....++++..++-...+... +.+.+. .+...+.--|. +.+|+
T Consensus 255 ~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~ 334 (488)
T KOG2325|consen 255 KKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRR 334 (488)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccce
Confidence 334455678888888888888888888888888888888888877554444331 122222 22222222230 23344
Q ss_pred HHHHHHHHHHHHHHHH--HhhhcccccC--C--C-CCCCC-CCcCCCCCCchHHHHHHHHH-HHHHhcccchhhhhhhhh
Q 035554 104 TCVTFQAFSIIGLLGL--SFATQSFLLR--P--H-GCGKI-GQLCDPHSPAETAIFYISIY-LFALGIGAPEPALATFGA 174 (562)
Q Consensus 104 ~i~~~~~~~~~~~~~~--~~~~~~~~~~--~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~-l~g~g~g~~~~~~~~~~~ 174 (562)
.+..++++........ +..-....+. + + .|+.. |+-|+..+....+.++++.. ++|.+.-.......++-+
T Consensus 335 ~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlyS 414 (488)
T KOG2325|consen 335 IILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYS 414 (488)
T ss_pred eeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHH
Confidence 4544433332222221 1110000000 1 0 11111 35677777777777777654 456666666777888889
Q ss_pred ccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 035554 175 DQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLR 243 (562)
Q Consensus 175 ~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~ 243 (562)
+...+.+ .+..-+.+.....++..++|++...+....|.++.+.+..+..++...++....+|
T Consensus 415 kiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~r 477 (488)
T KOG2325|consen 415 KILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLKR 477 (488)
T ss_pred HHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998877 67777788888889999999988888888888888777776666555554444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00039 Score=75.55 Aligned_cols=176 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhc-ccchHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMG-SLYLSSLMGAFLSDSY-LGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grk~~i~~~~~~~ 112 (562)
+.+..+.++..++.+...++.+++|.|++++|+.++++++.+.+...+ +..++.+++|++..|+ ++.|++.....+..
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 456677888888999999999999999999999999999999887755 6778999999999995 34566665555544
Q ss_pred HHHHHHH----Hhhhccc---ccCCCC-CCCC-------CCcC----------------CCCCCchHHHHHHHHHHHHHh
Q 035554 113 IIGLLGL----SFATQSF---LLRPHG-CGKI-------GQLC----------------DPHSPAETAIFYISIYLFALG 161 (562)
Q Consensus 113 ~~~~~~~----~~~~~~~---~~~~~~-~~~~-------~~~~----------------~~~~~~~~~~~~~~~~l~g~g 161 (562)
.++.++. .+.+..+ .+...+ .... ...| +..-......+++..++..+.
T Consensus 385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~ 464 (539)
T PF03137_consen 385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF 464 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence 4444331 1111100 011001 0000 0122 111112345566666665555
Q ss_pred cccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHH-hHHHHHHhhhhhhcccc
Q 035554 162 IGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIAL-NLGCLFSETVLVYAENM 216 (562)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~lg~~~~~~~~~~l~~~ 216 (562)
.+..........-+.+++++ |..+.++..... -+|..=+|++-|.+.+.
T Consensus 465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 55555555666678899888 899999966555 56777889888888774
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.048 Score=57.34 Aligned_cols=155 Identities=12% Similarity=-0.029 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..++.-++..+.+++.-+.-..+..|++++ |+++...|..-+...+.+..+.+...++.+| +|.-|+=+.++......
T Consensus 259 ~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~ 336 (432)
T PF06963_consen 259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVC 336 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHH
Confidence 455555666666666666777888999987 9999999999999999999999999999999 79999888887776655
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
..++...-..|. ++....+...++.+..+-=+|.=++.-+..-++-|..|+++ |+...+..
T Consensus 337 L~~~v~~~~~~~-------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq 397 (432)
T PF06963_consen 337 LALCVVSFWAPG-------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQ 397 (432)
T ss_pred HHHHHHHHhcCC-------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHH
Confidence 544443311121 00012345566677777778888888888898999898888 99999999
Q ss_pred HHHHhHHHHHHhhhhh
Q 035554 196 YIALNLGCLFSETVLV 211 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~ 211 (562)
+...|+.-++...++-
T Consensus 398 ~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 398 NSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999998887765443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=62.46 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=82.9
Q ss_pred HhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHH
Q 035554 383 PLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQME 462 (562)
Q Consensus 383 ~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~ 462 (562)
++..+++| | ..+..++++..++-+..++. .+.+..++.-++.|++........+.
T Consensus 140 ~lsD~~GR-k-------~~~~~~~~~~~i~~~~~a~a-----------------~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 140 PLSDRFGR-K-------PVLLVSLLLFIIFGILTAFA-----------------PNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred ehHhhccc-H-------HHHHHHHHHHHHHHHHHHHh-----------------CcHHHHHHHHHHHHhhccchhHHhHh
Confidence 55557554 2 24566777776666666664 67788888999999999999999999
Q ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 035554 463 FFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGV 537 (562)
Q Consensus 463 ~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~ 537 (562)
+..|..+++.|+.+..+ ......++.+++...+.+.. +| .+.+++..+...+..+.
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWIISIPSGLFLLL 250 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999 77777777777777665543 34 56666666666655544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.016 Score=59.90 Aligned_cols=183 Identities=13% Similarity=0.023 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.+.+++++....-..+|++.+.+..-+. .-|++...+|.......+++.++.+++|.++||.-.-|++.++......+
T Consensus 266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 266 RQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV 344 (480)
T ss_pred ccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 56677777777777777777766654333 34667788999999999999999999999999943334444444444444
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhcc-CCCCCchhhhhhhhhHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQ-FDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~ 193 (562)
+...+...+. . ....+.++.-..+.|+......|...-+..|. +|..+ +.-.|
T Consensus 345 ~~~~l~~~t~-~------------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsG 398 (480)
T KOG2563|consen 345 GTLMLLTCTL-F------------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSG 398 (480)
T ss_pred HHHHHHHhhc-c------------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccce
Confidence 4322211111 1 11234455555566777777778777777776 45544 34445
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc----hhHHHHHHHHHHHHHHHHHHhcCcce
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY----WVLGFWICAGCDILAFSSLLSGTLRY 244 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~----~~~~f~i~~~~~~~~~~~~~~~~~~~ 244 (562)
..+...++-+.+-.++-+...+..+ +...-+.......+..++..+.++++
T Consensus 399 ll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 399 LLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred eEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence 5555566656655666666666555 33333333333334444444444443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.029 Score=61.99 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhc-ccchHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMG-SLYLSSLMGAFLSDSY-LGRYLTCVTFQAFS 112 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grk~~i~~~~~~~ 112 (562)
+-..+..++..++...+-++.+++|.|+.+++|.+.+.+..+++...+ +..++.+++|++.-|+ ++.|.+.....+..
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 355677888889999999999999999999999999999999977655 4558888999999986 44566665555544
Q ss_pred HHHHHHH---Hh-hhcc-------------cccCCCC-----------CC---------CC---C---------------
Q 035554 113 IIGLLGL---SF-ATQS-------------FLLRPHG-----------CG---------KI---G--------------- 137 (562)
Q Consensus 113 ~~~~~~~---~~-~~~~-------------~~~~~~~-----------~~---------~~---~--------------- 137 (562)
.++.+.+ .+ .+.. |....++ |+ .. |
T Consensus 472 ~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~ 551 (735)
T KOG3626|consen 472 VLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTS 551 (735)
T ss_pred HHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCC
Confidence 4444331 11 1110 1111111 11 11 0
Q ss_pred -------C-cCCC----------------CCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 138 -------Q-LCDP----------------HSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 138 -------~-~~~~----------------~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+ .|-+ .-...+..|++..++..+-.+...+....++-+.+++++ |..+.+
T Consensus 552 ~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG 625 (735)
T KOG3626|consen 552 DGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALG 625 (735)
T ss_pred CCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhH
Confidence 0 2322 112234444444444444445555666677788899988 899999
Q ss_pred HHHHHH-hHHHHHHhhhhhhccc
Q 035554 194 YFYIAL-NLGCLFSETVLVYAEN 215 (562)
Q Consensus 194 ~~~~~~-~lg~~~~~~~~~~l~~ 215 (562)
+..+.. -+|..=+|++-|++.+
T Consensus 626 ~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 626 FQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred HHHHHHHHHhcCCchHhhhhhHh
Confidence 966666 5677778999999876
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.038 Score=57.34 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCch---hHHHHH
Q 035554 401 RVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNG---LKSLGI 477 (562)
Q Consensus 401 ~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~~~ 477 (562)
.+..|.++..+|.+...+.... . ..+...+...+.+++.+.++|.++.=|+...+..++.+++ .|..+-
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~------~--~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F 74 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP------P--SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFF 74 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS------S--SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhc------c--hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhH
Confidence 4667788888888775554211 0 0011233456778889999999999999999999999987 355555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 035554 478 ALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSI 548 (562)
Q Consensus 478 gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 548 (562)
..+-++.++|+.++..+.+.+.+ +.++...|.+.++.++++.+.++.-.++++++
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred HHHHHHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 66778889999999887776654 23457788888888888888888776666665
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.14 Score=54.01 Aligned_cols=182 Identities=15% Similarity=-0.005 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch-------HHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSV-----LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY-------LTC 105 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk-------~~i 105 (562)
+.+++...+-+..+-=..+.+..|.++. +|+ +-...+..+...+...+..|+..++.-+ ++++ .-+
T Consensus 287 ~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~-~vp~~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KF 364 (498)
T COG3104 287 IPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGF-EVPPAWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKF 364 (498)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhcccccce-ecCHHHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHH
Confidence 3334333344444444556666676553 331 2345667777778888888888888887 4655 134
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
.++..+...+.+.+........ +++...+.++++..-+++++|.=+..|...++++.+.|+.-
T Consensus 365 alGl~l~g~~fl~l~~~~~~~~-------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~---- 427 (498)
T COG3104 365 ALGLILAGLGFLILLLAGIWFG-------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL---- 427 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH----
Confidence 4555566666655554411010 11233568899999999999999999999999999998765
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhc------ccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYA------ENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l------~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+..++.+.+....|..++..+.+.- .+.......|+..+...++..+.++..
T Consensus 428 --~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 428 --KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred --HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 67888888888888887776666531 122334556666665555444444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.19 Score=48.85 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHH
Q 035554 398 ELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGI 477 (562)
Q Consensus 398 ~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~ 477 (562)
|...+.+|.++..+|........+.+ -.+.+.|.+....++.+.+....+........+..|. .||++.
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~~----------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vv 133 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSGR----------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVV 133 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc----------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCcee
Confidence 55566788888888877765543321 1125667776677788888877777777777788985 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 035554 478 ALSMSSTAIGTYVCSMILSVV 498 (562)
Q Consensus 478 gl~~~~~~lg~~lg~~l~~~i 498 (562)
|+-....++++.+-..+...+
T Consensus 134 gilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 134 GILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred hhhhHHHHhHHHHHHHHHHHH
Confidence 999999999987766655443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.83 Score=40.90 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVV 498 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i 498 (562)
.+.+.+.+.-++.|++.+....+.-.+..+...++.+++..++++.....+.++|+.+.-.+
T Consensus 87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999888887765443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.15 Score=52.96 Aligned_cols=142 Identities=13% Similarity=0.020 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--HHHHHHH
Q 035554 40 LLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA--FSIIGLL 117 (562)
Q Consensus 40 l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~--~~~~~~~ 117 (562)
+....++|++...++.+.+. +.+.+.-...+.-+...+|.+|..++.--.-. +--|++.+.+.+ +-.+..+
T Consensus 252 L~lVY~aEY~InqGv~~tl~--fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~-----~rir~lwils~LQ~~nl~~~~ 324 (402)
T PF02487_consen 252 LFLVYFAEYFINQGVAPTLL--FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPF-----FRIRRLWILSLLQVINLVFLL 324 (402)
T ss_pred HHHHHHHHHHHHhchHHHhc--CCccCCCHHHHHHHHHHHHHHHHhhhhcceee-----eehhhHHHHHHHHHHHHHHHH
Confidence 45556666666666554321 22223333445666666676666665533221 222444443332 2222222
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
+.+.-..+| +.+..++..+..|+..|+...+....+.|..++++ |...++....
T Consensus 325 l~s~~~fip--------------------si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsv 378 (402)
T PF02487_consen 325 LQSWYRFIP--------------------SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSV 378 (402)
T ss_pred HHHHHHHhh--------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHH
Confidence 222222222 36667777788899999999999999998877766 8899999999
Q ss_pred HHhHHHHHHhhhhhhcc
Q 035554 198 ALNLGCLFSETVLVYAE 214 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~ 214 (562)
+-++|..++.+++-++.
T Consensus 379 sds~GI~lAgll~l~le 395 (402)
T PF02487_consen 379 SDSLGILLAGLLGLPLE 395 (402)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 99999998887766554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=93.81 E-value=2.3 Score=47.51 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchh---HH
Q 035554 398 ELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGL---KS 474 (562)
Q Consensus 398 ~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~---rg 474 (562)
..+.+..+.++..++..+..+.... ..............+.+.++|.+..-|+..++..++.+++. +-
T Consensus 53 ~~~tIl~~~ii~~lG~~llai~a~~---------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~ 123 (654)
T TIGR00926 53 KFKTILYLSIVYVVGHALLSFGAIP---------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRS 123 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCc---------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHH
Confidence 3445677777777777666543100 00000112234567888999999999999999999987654 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 475 LGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 475 ~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
....++-++.++|+.+++.+.+.+.... .+.+ ...++...|.+.++.++++.++++...+++++
T Consensus 124 s~F~~fY~~iNiGSlis~~i~~~l~~~~---~~fg------~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~ 187 (654)
T TIGR00926 124 RFFSFFYFAINAGSLISTIITPILRGDV---GCFG------CQDCYPLAFGVPAILMILALIVFMAGSKMYKK 187 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccc------cCcchHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 4555566667888888877776554210 0000 01134667888888888888887766665543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.11 Score=54.03 Aligned_cols=130 Identities=14% Similarity=0.061 Sum_probs=91.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchh
Q 035554 360 ASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSI 439 (562)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (562)
+.+....++.-++..|+++...+..-.|++|||| -+..+.++.+++++..++..+......+....+.....+
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP-------fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP-------FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred cccccccccccceecccccccccccccccccccc-------hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 4455666778888889999999889999998776 467788888888888888766544333322211222333
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 035554 440 FWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSL-GIALSMSSTAIGTYVCSMILS 496 (562)
Q Consensus 440 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-~~gl~~~~~~lg~~lg~~l~~ 496 (562)
...++.+-++=++.-.+..+.=++..+.+-.+.+-+ +++.+.++.++|+.+|-.+.+
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 444555666666665666555677888777777777 999999999999999966543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=10 Score=39.39 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMI 494 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l 494 (562)
+-+|.+....++|+..+-.....+.++.+.+|++.+..+-.+..+....|-..|..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 446778889999999999999999999999999999888888888877777777554
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=92.71 E-value=14 Score=39.52 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 440 FWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILS 496 (562)
Q Consensus 440 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~ 496 (562)
..++..+++..+.....+.+.+++-.+++.+..=|++|-+-|+..++|+---..++-
T Consensus 406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL 462 (544)
T PF13000_consen 406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVL 462 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHH
Confidence 334567888888888999999999999999999999999999999999855544433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.26 Score=52.31 Aligned_cols=156 Identities=15% Similarity=-0.013 Sum_probs=89.3
Q ss_pred HHhhC---CChhhhhhHHHHHHHHHHHHHHHHH-HHhhhcccchHHHHHHHHHHHHHHHHHHhh-hcccccCCCCCCCCC
Q 035554 63 KSVLR---QTNAEASNTFSRWMGSLYLSSLMGA-FLSDSYLGRYLTCVTFQAFSIIGLLGLSFA-TQSFLLRPHGCGKIG 137 (562)
Q Consensus 63 ~~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grk~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 137 (562)
++..+ +|+...+.+..+..++..++..+.. +++|+ .-|+++....++.++..+...+. ..+.. ..++.+
T Consensus 244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~--~~R~~~~~t~~~~~~~~l~~~~lv~~~n~--~~Gi~d-- 317 (433)
T PF03092_consen 244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW--SWRRIFVVTTLVSVLASLFDLLLVTRWNL--DLGIPD-- 317 (433)
T ss_pred eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcccEEEEEEEee--eeCcCC--
Confidence 34566 8888888777666777776666543 44443 66777776666655544432221 11000 000100
Q ss_pred CcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccccc
Q 035554 138 QLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMG 217 (562)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~ 217 (562)
.+..+.--++..+..+...-....+.+++.|+.. -++.+++.....|+|..++..++..+.+..
T Consensus 318 ----------~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 318 ----------QWFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred ----------eEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111112223344444444555677899999888 789999999999999999998888776544
Q ss_pred c--------hhHHHHHHHHHHHHHHHHHHhc
Q 035554 218 Y--------WVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 218 ~--------~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
+ -++..+++.++.++.+.+..+.
T Consensus 382 ~vt~~~f~~l~~lili~~~~~ll~l~ll~lL 412 (433)
T PF03092_consen 382 GVTRDDFSNLWLLILICSVIQLLPLPLLFLL 412 (433)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHc
Confidence 3 2334444444444444433333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=5.4 Score=42.30 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhhhc--ccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC--CchHHHHHHHHH
Q 035554 81 MGSLYLSSLMGAFLSDSY--LGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS--PAETAIFYISIY 156 (562)
Q Consensus 81 ~~~~~~~~~~~G~laDr~--~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 156 (562)
..+..++..+.+.+++|. +||++.+.++..+..++.++..+. .|.-.|... ...++. .+......+.-+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~--~p~dap~~~-----t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLS--FPNDAPLRP-----TDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcc--ccccCCCCC-----CcccccccccchhHHHHHHH
Confidence 445555556666666543 789999999999888888776554 242111000 000111 123445566667
Q ss_pred HHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhh
Q 035554 157 LFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSET 208 (562)
Q Consensus 157 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~ 208 (562)
+.|++.+........++++.+| ++ |..+++++-.-..++..++..
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999984 45 567777766666666554433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.75 E-value=2.1 Score=41.66 Aligned_cols=140 Identities=19% Similarity=0.122 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccchH---HHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHH
Q 035554 73 ASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL---TCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETA 149 (562)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (562)
-|.+++.+..+++++.-+...+..| .|.| .+.+..++.++...+..+. +.-+ +...+..
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~--s~~~ve~ymqivf~vs~a~l~Lpilt-~~vs---------------P~kes~~ 345 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSR--SSPKVESYMQIVFLVSIAALLLPILT-SSVS---------------PSKESPS 345 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhc--CCcccchHHHHHHHHHHHHHHHHHHH-hccC---------------CCcCCch
Confidence 5788888888888888877777766 2332 3444444444444333332 1111 1123455
Q ss_pred HHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHH
Q 035554 150 IFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGC 229 (562)
Q Consensus 150 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~ 229 (562)
.-+++..++-...|.++|.+.-+=.+..|++. |...++++..-.|+-.-++....-.-....+-|..|-++...
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~ 419 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAF 419 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHH
Confidence 55777778888889999999999899899888 899999998888876654432110001123456788888877
Q ss_pred HHHHHHH
Q 035554 230 DILAFSS 236 (562)
Q Consensus 230 ~~~~~~~ 236 (562)
..++.+.
T Consensus 420 ~~~a~i~ 426 (454)
T KOG4332|consen 420 LFVASIL 426 (454)
T ss_pred HHHHHHH
Confidence 7666554
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.57 E-value=7.2 Score=39.54 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCC--CCC
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWV--PPN 514 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~--~~~ 514 (562)
.++|+.-.+|+++....++..+....-+++....+.-|..-|++.+..-+-+.+-..++. + . -++ +--
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iVv---d----~---~g~~L~ir 393 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIVV---D----D---RGLGLDIR 393 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEEE---c----c---cccCCCcc
Confidence 567888889999999998888777677776677788888888887665554444333221 1 0 011 000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 515 LNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 515 l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
.+..-+..+|.+++++.++.....+...++
T Consensus 394 ~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~ 423 (433)
T KOG3810|consen 394 TQFVVYSSYFIVLGVIFLIGFGIEYLMCRR 423 (433)
T ss_pred eeEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 011123457888888888876665544443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=89.53 E-value=34 Score=36.90 Aligned_cols=167 Identities=14% Similarity=0.043 Sum_probs=92.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCC---ChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQ---TNAEASNTFSRWMG-SLYLSSLMGAFLSDSYLGRYLTCV 106 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~---s~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~i~ 106 (562)
+.-++.++.+.+..+|..+.|..+.. +++.+=. ++.....+-....+ ...+..++-.+++|+ ++|.+++.
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy 93 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 34457788888888888777665543 3443322 23333333332222 445566778999999 79999988
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCC---CCCCchH---------H---HHHHHHHHHHHhcccchhhhhh
Q 035554 107 TFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCD---PHSPAET---------A---IFYISIYLFALGIGAPEPALAT 171 (562)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------~---~~~~~~~l~g~g~g~~~~~~~~ 171 (562)
+....+..-..+.++.- .|.-. .-|-+..|+ .....++ | ++++.-=+.| .-...-....
T Consensus 94 ~~~~~F~~fF~~f~~vl-yP~~~---~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwg--svvlSlLFW~ 167 (491)
T PF03219_consen 94 IIIIPFLGFFALFAFVL-YPNRD---ILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWG--SVVLSLLFWG 167 (491)
T ss_pred HHHHHHHHHHHHHHHHH-hhchh---hcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 77666555444444331 13200 000000000 0000111 1 1222111111 1111123577
Q ss_pred hhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 172 FGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 172 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
+..|.+..++ -.+.++++..+.|+|..+++.+..++.+
T Consensus 168 fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 168 FANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777 5699999999999999999888887766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.56 E-value=42 Score=35.61 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMIL 495 (562)
Q Consensus 438 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~ 495 (562)
+-++..+..+++|+..|......+.+..+.++++.|..+..+..++..+|-..|..+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677799999999999999999999999999999999999999999988887654
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.00 E-value=6.6 Score=39.41 Aligned_cols=114 Identities=17% Similarity=0.033 Sum_probs=68.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
..-|.++.+-...+....+|-+.. ++.......+| ....+. ........+++.+.+..+ +|-|.++.++...
T Consensus 26 ~~~knv~i~s~~fl~~f~a~~gl~-nlq~~vn~~lg--~~sl~~----~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~ 97 (390)
T KOG3097|consen 26 GILKNVLILSIAFLLTFTAYLGLQ-NLQTSVNYDLG--TVSLGA----LYLSLIDSSMFMPLLIRF-LGTKWTMVLAVFP 97 (390)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhcCcc--cchhhh----hhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 344677777776666666666553 44444433222 222222 234445555666678887 8999999988766
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccC
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQF 177 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 177 (562)
+..... ++-.| .+..++.+-...|+|.+..+..-.+++++.-
T Consensus 98 Y~lyiA----~Nl~p--------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 98 YALYIA----ANLEP--------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHH----hhcch--------------------hHHhhccHHHhhccccccccccCcceecHHH
Confidence 653332 21112 3445666777789999988887777776643
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.40 E-value=56 Score=34.91 Aligned_cols=168 Identities=15% Similarity=0.013 Sum_probs=101.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCC---hhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQT---NAEASNTFSRWMG-SLYLSSLMGAFLSDSYLGRYLTCVTF 108 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s---~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grk~~i~~~ 108 (562)
-++.+..+.+..+|..+.++.+.. +++.+..+ +.....+-+.... ++.+..++-+++.++ +.|.+++.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHH
Confidence 456777888888888777776654 45555444 4455666666655 677888899999999 7999999887
Q ss_pred HHHHHHHHHHHHhhhcccccC--CCCCCCCCC--cCCCCC-C--------chHHHHHHHHHHHHHhcccchhhhhhhhhc
Q 035554 109 QAFSIIGLLGLSFATQSFLLR--PHGCGKIGQ--LCDPHS-P--------AETAIFYISIYLFALGIGAPEPALATFGAD 175 (562)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~-~--------~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 175 (562)
+..+....+++++. -.|.-. |+...-.+| ...+.. . .+...+++.-=+.|.- ...-....+..|
T Consensus 99 ~~~F~~fF~LFa~V-i~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgsl--V~S~lFw~faNe 175 (509)
T COG3202 99 LGFFLGFFALFAFV-IYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSL--VLSLLFWQFANE 175 (509)
T ss_pred HHHHHHHHHHHHHH-HhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 77777666666554 113200 000000000 000100 0 0112222222222211 112234566777
Q ss_pred cCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc
Q 035554 176 QFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN 215 (562)
Q Consensus 176 ~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~ 215 (562)
....++ -.|.+++++...|++..++..+..++.+
T Consensus 176 itt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 176 ITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777766 6799999999999999999988888865
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=84.79 E-value=4.2 Score=43.18 Aligned_cols=154 Identities=12% Similarity=-0.045 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-CCChh-hhhhHHHHHHHHHHHHHHHHHHHhhhcccch-HHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVL-RQTNA-EASNTFSRWMGSLYLSSLMGAFLSDSYLGRY-LTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~l-g~s~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk-~~i~~~~~~ 111 (562)
|.+|...+..++..+....+.+-.....+..- +.++. -.-..+.+|.++=.+|..+..+.. . -++| +.+.+..+.
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~ 346 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFL 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHH
Confidence 56666666666655555544443333323221 22332 334455566666666665444321 1 1222 133333333
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCC-CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH-SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
=.+-..+..+++.-|.. +.+ --.+-+..++..++.|+.+|........+..+..++++ |..
T Consensus 347 R~iFIPlf~lcn~~~~~------------~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~ 408 (437)
T TIGR00939 347 RVLFIPLFLLCNYPQRS------------RLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REV 408 (437)
T ss_pred HHHHHHHHHHhcCCccc------------cCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHH
Confidence 22222222222111100 000 00235566677889999999998888888888877655 556
Q ss_pred hHHHHHHHHhHHHHHHhh
Q 035554 191 FYSYFYIALNLGCLFSET 208 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~ 208 (562)
+-.+...+.++|-.+|..
T Consensus 409 aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 409 AGALMVIFLLVGLALGAV 426 (437)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666777666654
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.79 E-value=3.4 Score=42.80 Aligned_cols=109 Identities=11% Similarity=0.011 Sum_probs=64.1
Q ss_pred HHHHHHHHHhh---CCChhhhhhHHHH-HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 035554 56 VNMVLFAKSVL---RQTNAEASNTFSR-WMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPH 131 (562)
Q Consensus 56 ~~~~~y~~~~l---g~s~~~~~~~~~~-~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
...|.+..+.- ..++.-.-..... |.+.-.+|.+.+.++-++ +||+.....++ =.+-..+..+++..|. .
T Consensus 264 siFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v~l-R~lfiPlF~~cn~~~~-~-- 337 (406)
T KOG1479|consen 264 SIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPVLL-RLLFIPLFLLCNYPPL-P-- 337 (406)
T ss_pred EecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHHHH-HHHHHHHHHHhccCCC-C--
Confidence 34555554432 2233445555555 888888888888888776 56665554443 2222222222221110 0
Q ss_pred CCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCC
Q 035554 132 GCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEED 181 (562)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 181 (562)
.--.+-+++++...++|+.+|-.......+..+..++++
T Consensus 338 -----------v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 338 -----------VVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred -----------ceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 001246677788889999999988888888888777555
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.41 E-value=37 Score=34.04 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035554 437 LSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMIL 495 (562)
Q Consensus 437 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~ 495 (562)
.++|.....++.-|+-.+..+...+--+.+..+++.|..+|+...+.-.+|..+.+.+.
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 34444333444444444444555555566888899999999999988888888876653
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=81.10 E-value=83 Score=33.74 Aligned_cols=57 Identities=11% Similarity=-0.065 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhhh-hHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 035554 444 PQYVLLGVSEAFVYV-AQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMV 500 (562)
Q Consensus 444 ~~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~ 500 (562)
..|+...+-...+.. .-|.++.|....++-.+..++.....++|..+|+.+...+..
T Consensus 133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 778999999999999999999999999999999988776553
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 562 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 6e-11 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 323 bits (830), Expect = e-104
Identities = 108/540 (20%), Positives = 184/540 (34%), Gaps = 78/540 (14%)
Query: 49 LAFAGVEVNMVLFAKSVLRQ------TNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRY 102
+F G+ + F + L A A + F ++ +Y L+G +++D + G+Y
Sbjct: 26 FSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY 85
Query: 103 LTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGI 162
T + +G L+ FY ++L ALG
Sbjct: 86 NTILWLSLIYCVGHAFLAI----------------------FEHSVQGFYTGLFLIALGS 123
Query: 163 GAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVY-AENMGYWVL 221
G +P +++F DQFD+ + + + FY +N G F+ + +N G +
Sbjct: 124 GGIKPLVSSFMGDQFDQSNKSLAQK---AFDMFYFTINFGSFFASLSMPLLLKNFG-AAV 179
Query: 222 GFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFE 281
F I +A G RY H P F VI ++L +E N G +
Sbjct: 180 AFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK-VEGKGNIGLVLA 238
Query: 282 VHVREYEANGTRRILHTNDFKFLDRAAIMTSADIT-TNEDQNPNQWRLCTVTQVEE---- 336
+ A I L A ++ + Q + V+
Sbjct: 239 LIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSV 298
Query: 337 -------------------MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLY 377
S ++ Q M V PA M A + + I
Sbjct: 299 LRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWFEPAMMQALNPLLVMLLIPFN 355
Query: 378 DKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSL 437
+ ++ P +R + L+++G G+AI ++ I+ G ++ + S+L
Sbjct: 356 NFVLYPA----IERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM--------DGGSAL 403
Query: 438 SIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSV 497
SIFWQ Y LL E V +EF SQ P +K ++ S +G +
Sbjct: 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVS 463
Query: 498 VMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQEGES 557
V + V ++ FFF A + VF + AR Y+ +Q S
Sbjct: 464 V---KSPTVTEQIVQTGMSVTAFQMFFF--AGFAILAAIVFALYARSYQMQDHYRQATGS 518
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 34/203 (16%), Positives = 75/203 (36%), Gaps = 32/203 (15%)
Query: 49 LAFAGVEVNMVLF-----AKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYL 103
++ G+ ++ + + L T A A++ + + +YLS +G F++D +G
Sbjct: 27 FSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP 86
Query: 104 TCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIG 163
++G + L+ P + + SI L +G G
Sbjct: 87 AVFWGGVLIMLGHIVLAL-----------------------PFGASALFGSIILIIIGTG 123
Query: 164 APEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGF 223
+P ++T +DE D + + + +S F +NLG + ++ A+ + + F
Sbjct: 124 FLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAF 179
Query: 224 WICAGCDILAFSSLLSGTLRYRH 246
+ A + G +
Sbjct: 180 SLAAIGMFIGLLVYYFGGKKTLD 202
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 373 FILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGE 432
FI+LY L+ K +P +P+ + +GL A ++ ++ +
Sbjct: 331 FIMLYTPFFAWLWTAWKKNQPSSPT---KFAVGLMFAGLSFLL--------MAIPGALYG 379
Query: 433 ETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCS 492
+ +S W + L+ + E + + P S +++ S+++G+ + +
Sbjct: 380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439
Query: 493 MI 494
+
Sbjct: 440 QL 441
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.91 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.84 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.5 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.41 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.37 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.29 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.02 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.26 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=269.48 Aligned_cols=458 Identities=21% Similarity=0.270 Sum_probs=275.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC------CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHH
Q 035554 32 GGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLR------QTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL-GRYLT 104 (562)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grk~~ 104 (562)
.++|.++.+.+..++.++++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 445778889999999999999999999999999999 999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchh
Q 035554 105 CVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKE 184 (562)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 184 (562)
+.++.++..++.+++.++ + .+.+.++++|++.|++.+...|+..+++.|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 142 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIF---E-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHHT---S-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred HHHHHHHHHHHHHHHHHh---c-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence 999999999999888776 2 037788999999999999999999999999999887
Q ss_pred hhhhh---hhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHH
Q 035554 185 KKSKT---SFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVI 261 (562)
Q Consensus 185 ~~~r~---~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (562)
|+ ..+++++...++|..++|.+++++.+..+|++.|++.+++.+++.++++...++.+.++|++++..+..+..
T Consensus 143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 64 455669999999999999999999888899999999888777766665554443332223222211111111
Q ss_pred HHHHhhhcccC-------------------CCCCCC-c--------cccchhhhhcc--------Cc-ccccccCchhHH
Q 035554 262 VASLRKINLEM-------------------PTNGGG-L--------FEVHVREYEAN--------GT-RRILHTNDFKFL 304 (562)
Q Consensus 262 ~~~~~~~~~~~-------------------~~~~~~-~--------~~~~~~~~~~~--------~~-~~~~~~~~~~~~ 304 (562)
....++++... ...... . +...+...... .. ......+..+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
T 2xut_A 220 RSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVL 299 (524)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHH
T ss_pred HHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHH
Confidence 11111110000 000000 0 00000000000 00 000000000000
Q ss_pred HHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHh
Q 035554 305 DRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPL 384 (562)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 384 (562)
....... ..........+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+.
T Consensus 300 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (524)
T 2xut_A 300 RILVLFA--------------LVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPA 362 (524)
T ss_dssp HHHHHHT--------------TSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----
T ss_pred HHHHHHH--------------HHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 0000000 000000111123334444433333221 1 2455566666777777777877665555
Q ss_pred hhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHH
Q 035554 385 YLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFF 464 (562)
Q Consensus 385 ~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~ 464 (562)
.+|+++ +.++.+.+..|.++.+++++...+....+ +.....+.+++++.+++.+++++...+..++++
T Consensus 363 ~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 430 (524)
T 2xut_A 363 IERMGV----KLTALRKMGAGIAITGLSWIVVGTIQLMM--------DGGSALSIFWQILPYALLTFGEVLVSATGLEFA 430 (524)
T ss_dssp ------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 23455667778877777776654431100 001124567778899999999999999999999
Q ss_pred HhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 035554 465 ASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP-NLNDGHLDRFFFLSATVTAMNLGVFVVCAR 543 (562)
Q Consensus 465 ~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~-~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 543 (562)
.+.+|+++||+++|++++..++|+.+++.+.+.+.+.+. .+|.++ ..+. ....|++.+++++++.++++++.+
T Consensus 431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999886543110 012100 0010 122377778888888888777777
Q ss_pred cccccchhhh
Q 035554 544 RYKSISLQKQ 553 (562)
Q Consensus 544 ~~~~~~~~~~ 553 (562)
+++++..++.
T Consensus 505 ~~~~~~~~~~ 514 (524)
T 2xut_A 505 SYQMQDHYRQ 514 (524)
T ss_dssp ----------
T ss_pred Hhccchhhhh
Confidence 7666554433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=261.22 Aligned_cols=434 Identities=15% Similarity=0.225 Sum_probs=283.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSV-----LRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTC 105 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i 105 (562)
++++|..+.+.+..++.++++|++.++++.|++++ +|++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 45678899999999999999999999999999998 9999999999999999999999999999999933999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhh
Q 035554 106 VTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEK 185 (562)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 185 (562)
.++.++..++.+++.++ + +.+.++++|++.|++.+...|+..+++.|++|+++++
T Consensus 89 ~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALP---F--------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHSC---C--------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH--
T ss_pred HHHHHHHHHHHHHHHHh---h--------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc--
Confidence 99999999999888775 2 3667899999999999999999999999999987622
Q ss_pred hhhhhhHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeec---CCCCC-chhHHHHHH
Q 035554 186 KSKTSFYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHF---KPSGN-PLSRFSQVI 261 (562)
Q Consensus 186 ~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~ 261 (562)
|+.++++++...++|..++|.+++++.+..||++.|++.++..+++.++++...++...+ +|+.+ ..++..+..
T Consensus 144 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 144 --RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred --ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 677888899999999999999999999889999999998877766666554443322211 11111 111111100
Q ss_pred H---------------HHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHh-hhccc-cc-ccCCCCC
Q 035554 262 V---------------ASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAI-MTSAD-IT-TNEDQNP 323 (562)
Q Consensus 262 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~ 323 (562)
. ....+ +. . ..+....... ......... ..... .. ...+.+.
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~-~~------~-~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVG-WN------S-LPAYINLLTI------------VAIAIPVFYFAWMISSVKVTSTEHLR 281 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHS-SC------C-TTHHHHHHHH------------HHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHhcc-Cc------c-cccchhhhhH------------HHHHHHHHHHHHHhhcccccHHHHHH
Confidence 0 00000 00 0 0000000000 000000000 00000 00 0000000
Q ss_pred --ccceeeh--------hhhhhhhhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCC
Q 035554 324 --NQWRLCT--------VTQVEEMLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRP 393 (562)
Q Consensus 324 --~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~ 393 (562)
..+.+.. ........+.|..+..+.+ ..+.+.....+.+..++..++.+++ .+|+++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~~r~- 350 (491)
T 4aps_A 282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS------WFPVSWFQSLNPLFIMLYTPFFAWL----WTAWKKNQ- 350 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS------SSCSGGGTTHHHHHHHHHHHHHHHH----HHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC------ccCHHHHhccchHHHHHHHHHHHHH----HHHHhccC-
Confidence 0000000 0001112333444322221 1345666677777777777777654 34655422
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhH
Q 035554 394 KTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLK 473 (562)
Q Consensus 394 ~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 473 (562)
......+..+.++.++++....+..... + .....+.++.++.+++.+++++...|..++++.+..|++.|
T Consensus 351 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 351 --PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G-TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN 420 (491)
T ss_dssp ----CHHHHHHHHHHHHHHHTTTHHHHHHC-------C-CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C-CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 3455667788888888877776653210 0 01234667788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 035554 474 SLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSIS 549 (562)
Q Consensus 474 g~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (562)
|+++|++++...+|..+++.+.+.+.+ .++...|.+.++++++..++.++..++.+++.
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776543 12245677788888887777777766655543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=233.88 Aligned_cols=398 Identities=10% Similarity=0.019 Sum_probs=247.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 035554 33 GWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFS 112 (562)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~ 112 (562)
+++.++.+.+..++..+..+.+.+.++.+.+ ++ .+..+.|++.+.+.++..++.++.|+++|| +|||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHH
Confidence 3456667777777777777777777766554 56 999999999999999999999999999999 79999999999999
Q ss_pred HHHHHHHHh----hhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhh
Q 035554 113 IIGLLGLSF----ATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSK 188 (562)
Q Consensus 113 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 188 (562)
+++.+++++ + + +.+.++++|++.|++.+...++..+++.|++|+++ |
T Consensus 103 ~~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT---S--------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHHCHHHH---S--------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHHhhhhcc---c--------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 999998887 5 2 26678999999999999999999999999999887 9
Q ss_pred hhhHHHHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhh
Q 035554 189 TSFYSYFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRK 267 (562)
Q Consensus 189 ~~~~~~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (562)
++++++.+...++|..++|.+++++.+..+ |++.|++.+++.++..++.+...++.+.+....+. ++ .
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~ 222 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE----------Y 222 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT----------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh----------h
Confidence 999999999999999999999999888788 99999988876665554433332221111100000 00 0
Q ss_pred hcccCCCCCCCccccchhhhhccCccc----ccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHH
Q 035554 268 INLEMPTNGGGLFEVHVREYEANGTRR----ILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVE 343 (562)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 343 (562)
+...+ . +.++++......++ ...++. .+.......... .........+.+.|..
T Consensus 223 -~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 280 (451)
T 1pw4_A 223 -KNDYP---D---DYNEKAEQELTAKQIFMQYVLPNK-LLWYIAIANVFV--------------YLLRYGILDWSPTYLK 280 (451)
T ss_dssp -CCC-------------------CCTHHHHHHTSSCH-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHBT
T ss_pred -ccccc---c---cchhhhhcccccccchHHHHHcCH-HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 00000 0 00000000000000 000000 000000000000 0000000112222222
Q ss_pred HhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhh--ccCCCCCCChhHHHHHHHHHHH-HHHHHHHHHH
Q 035554 344 QGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKV--AKRRPKTPSELQRVGIGLAIAT-VAMIIAGIVE 420 (562)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~--~~~~~~~~~~~~~i~~g~ll~~-~~~~~~~~~~ 420 (562)
+..+.+ ....+.......+..++..++.. .+.+|+ ++ .+.+..+.++.. ++++...+.
T Consensus 281 ~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~- 341 (451)
T 1pw4_A 281 EVKHFA------LDKSSWAYFLYEYAGIPGTLLCG----WMSDKVFRGN--------RGATGVFFMTLVTIATIVYWMN- 341 (451)
T ss_dssp TBSCCC------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHTSTTC--------HHHHHHHHHHHHHHHHHHTTSC-
T ss_pred HhcCCC------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCC--------chhHHHHHHHHHHHHHHHHHHh-
Confidence 111110 11112222233333333333333 233343 22 223334433333 444333221
Q ss_pred HHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhH
Q 035554 421 QRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMSSTAI-GTYVCSMILSVVM 499 (562)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~l-g~~lg~~l~~~i~ 499 (562)
...+.+......++.|++.+...+..+.+..+..|++.||+++|+.+....+ |..+++.+.+.+.
T Consensus 342 --------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 342 --------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1125556667778888888888888899999999999999999999999999 9999999998776
Q ss_pred hhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 035554 500 VLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARR 544 (562)
Q Consensus 500 ~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 544 (562)
+.. ++...|++.+++.+++.+..+...++
T Consensus 408 ~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 408 DFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 521 23567777777777777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-23 Score=215.94 Aligned_cols=359 Identities=13% Similarity=0.012 Sum_probs=229.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 035554 31 TGGWRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQA 110 (562)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~ 110 (562)
+.+++.++.+....++..+......+.+|. +.+++|++..+.+++.+.+.++..++.++.|+++|| +|||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 344566666667777777777666665555 677899999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+++......+ +.+.++++|++.|++.+...+...+++.|++|+++ |++
T Consensus 100 ~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 153 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM--------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_dssp HHHHHHHHHHHHHHTT--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred HHHHHHHHHHhccccc--------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence 9999998883321112 38889999999999999999999999999999988 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhcC-cc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAE-NMGY-------------------------WVLGFWICAGCDILAFSSLLSGT-LR 243 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~-~~~~-------------------------~~~~f~i~~~~~~~~~~~~~~~~-~~ 243 (562)
.+++++...++|..++|.+++++. +..+ |++.|++.++...+..++++..+ |+
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999987 5444 89999776665555444443322 11
Q ss_pred eeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCC
Q 035554 244 YRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNP 323 (562)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (562)
.+.+++++++..+..... ... .+++..+.-.......
T Consensus 234 ~~~~~~~~~~~~~~~~~~-------------------------------~~~-~~~~~~~~~~~~~~~~----------- 270 (438)
T 3o7q_A 234 LQSDNHSDAKQGSFSASL-------------------------------SRL-ARIRHWRWAVLAQFCY----------- 270 (438)
T ss_dssp CTTTCCCCSSTTSHHHHH-------------------------------HHH-TTCSHHHHHHHHHHHH-----------
T ss_pred ccccccccccccchhhhH-------------------------------HHH-HhChHHHHHHHHHHHH-----------
Confidence 110000000000000000 000 0011001000000000
Q ss_pred ccceeehhhhhhhhhhHH-HHHhhhccCCCcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHH
Q 035554 324 NQWRLCTVTQVEEMLSLF-VEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRV 402 (562)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i 402 (562)
.........+.+.| ..+..+.+. ...+.......+..++..++.. .+.+|.+ +.+.+
T Consensus 271 ----~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g----~l~~r~~--------~~~~~ 328 (438)
T 3o7q_A 271 ----VGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTGT----WLISRFA--------PHKVL 328 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHH----HHHHHSC--------HHHHH
T ss_pred ----HHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHHH----HHHHHhc--------chHHH
Confidence 00000111234445 443222221 1112222232333333333333 3334443 23345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHHHH
Q 035554 403 GIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALSMS 482 (562)
Q Consensus 403 ~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~~~ 482 (562)
..+.++.+++++...+. .+. +.....++.+++.+...|..+++..+..|++ ++.++++..
T Consensus 329 ~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 388 (438)
T 3o7q_A 329 AAYALIAMALCLISAFA-----------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHHHHHHHHHC-----------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHc-----------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence 56666666665554432 222 3345568888898989999999999999977 999999877
Q ss_pred HHHHHHHHHHHHHHHhHhhh
Q 035554 483 STAIGTYVCSMILSVVMVLT 502 (562)
Q Consensus 483 ~~~lg~~lg~~l~~~i~~~~ 502 (562)
...+|..+++.+.+.+.+..
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 67799999999999876643
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=216.19 Aligned_cols=408 Identities=12% Similarity=0.084 Sum_probs=221.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHH
Q 035554 70 NAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETA 149 (562)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (562)
..+.|++.+.+.++..+++++.|+++|| +|||+++.++.+++.++.++++++.......... ..-......+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~-----~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPD-----NTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS-----SSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch-----hHHHHHHhhhHH
Confidence 3567888999999999999999999999 7999999999999999999887641000000000 000000023588
Q ss_pred HHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccc--------ccchhH
Q 035554 150 IFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAEN--------MGYWVL 221 (562)
Q Consensus 150 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~--------~~~~~~ 221 (562)
.++++|+++|+|.|...+..+.++.|..|+++ |++..++++.+..+|..+++.++..+.. ..+|+.
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 89999999999999999999999999999888 9999999999999999988877665432 235676
Q ss_pred HHHHHHHHHHHHHHHHHhcC--cceeecCCCCCchhHHHHHHHHHHhhhcccCCCCCCCccccchhh--hhccCcccccc
Q 035554 222 GFWICAGCDILAFSSLLSGT--LRYRHFKPSGNPLSRFSQVIVASLRKINLEMPTNGGGLFEVHVRE--YEANGTRRILH 297 (562)
Q Consensus 222 ~f~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 297 (562)
.+.+..+..++..+..+... |++...+.+.++. .+.+.....+.... ....+..+.. ...........
T Consensus 202 ~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a---~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 273 (491)
T 4gc0_A 202 MFASECIPALLFLMLLYTVPESPRWLMSRGKQEQA---EGILRKIMGNTLAT-----QAVQEIKHSLDHGRKTGGRLLMF 273 (491)
T ss_dssp HHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHH---HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTHHHHS
T ss_pred HhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHH---HHhHHHhcCCchhH-----HHHHHHHHHHHhhhhhhhHHHHh
Confidence 77666655544443332221 1221112111111 11111100000000 0000000000 00000000000
Q ss_pred cCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhh--hhhHHHHHhhhccCCCcccccCccccccchhHHHHHHHH
Q 035554 298 TNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEE--MLSLFVEQGAAMNTGVSNFQIPPASMTAFDIVSTTAFIL 375 (562)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (562)
......+.... ....+... ....|...... +.... ............+..++...
T Consensus 274 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 274 GVGVIVIGVML--------------------SIFQQFVGINVVLYYAPEVFK-TLGAS--TDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp CCTHHHHHHHH--------------------HHHHHHTCHHHHHHHHHHHHH-HSSCC--HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHH--------------------HHHHHHhhhhHHHhcchHHHH-hcCCC--ccchhhHHHHHHHHHHHHHH
Confidence 00000000000 00000000 11111111110 00000 00011111111112222222
Q ss_pred HHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccchhHHHHHHHHHHHHHHH-
Q 035554 376 LYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEETSSLSIFWQTPQYVLLGVSEA- 454 (562)
Q Consensus 376 l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~- 454 (562)
+...+.+|+++ | ..+..+....+++++..+..... ..+.+..+...+++..+..
T Consensus 331 ----~~~~l~dr~Gr-r-------~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 385 (491)
T 4gc0_A 331 ----LAIMTVDKFGR-K-------PLQIIGALGMAIGMFSLGTAFYT-------------QAPGIVALLSMLFYVAAFAM 385 (491)
T ss_dssp ----HHHHHHHHHCS-H-------HHHHHHHHHHHHHHHHHHHHHHT-------------TCCHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHhhcC-c-------chhccchHHHHHHHHHHHHHHhc-------------ccchHHHHHHHHHHHHHHHh
Confidence 22234456654 1 23455666666666555444221 1122222333333333333
Q ss_pred hhhhhHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 035554 455 FVYVAQMEFFASQIPNGLKSLGIALSMSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPPNLNDGHLDRFFFLSATVTAMN 534 (562)
Q Consensus 455 ~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~l~~~~~~~~f~~~~~~~~~~ 534 (562)
...|..+.+..|..|.+.|++++|+.+..+.+++++++.+.+.+.... |. ....+....|++++++++++
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~---~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WL---VAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HH---HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HhhhhhhHHHHHHHHHHHHH
Confidence 344777899999999999999999999999999999988776553311 00 00011234678889999999
Q ss_pred HHHHHHHhhcccccchhhhhh
Q 035554 535 LGVFVVCARRYKSISLQKQEG 555 (562)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~ 555 (562)
.++.+++.||+|+|++||.|+
T Consensus 456 ~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 456 ALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHHHCCCCTTCCHHHHGG
T ss_pred HHHHHheecCCCCCCHHHHHH
Confidence 999999999999999998663
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-22 Score=202.91 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLL 117 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~ 117 (562)
+.+....++..+......+.++.+ .+++|.+..+.+++.+.+.++..++.++.|+++|| +||||++..+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHH
Confidence 455666677777777777777664 56799999999999999999999999999999999 7999999999999999998
Q ss_pred HHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHH
Q 035554 118 GLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYI 197 (562)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 197 (562)
++.++. +.+.++++|++.|++.+...+...+++.|.+|+++ |++..++++.
T Consensus 81 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 131 (375)
T 2gfp_A 81 VAVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNM 131 (375)
T ss_dssp HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHH
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHH
Confidence 888762 37789999999999999999999999999999888 9999999999
Q ss_pred HHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 035554 198 ALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFS 235 (562)
Q Consensus 198 ~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~ 235 (562)
..++|..++|.+++++.+..+|+..|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999987776655444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=198.74 Aligned_cols=395 Identities=10% Similarity=0.007 Sum_probs=218.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|..+.+....++..+++..+.++++.|+++++|+|..+.|++.+.+.++..+++++.|+++|| +||||++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 677777777777778888888999999999999999999999999999999999999999999 7999999988876654
Q ss_pred HHHHH---HhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 115 GLLGL---SFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 115 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
+...+ .+. +. ....++.++.+.+++.+...+...+...+..++.. +.++..
T Consensus 86 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~ 139 (417)
T 2cfq_A 86 MFAPFFIFIFG---PL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFE 139 (417)
T ss_dssp CHHHHHHHTHH---HH-------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCC
T ss_pred HHHHHHHHHHH---HH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccc
Confidence 32111 111 00 00012334444444444443333444433332111 115666
Q ss_pred HHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhccc
Q 035554 192 YSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLE 271 (562)
Q Consensus 192 ~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (562)
++..+...++|..++|.+++++.+ .+|+..|++.++..++..+..+...++. ++..+.. +. ..
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------~~-~~ 202 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATVA------------NA-VG 202 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCSS------------SS-SS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---ccccccc------------cc-cc
Confidence 777777789999999999999876 5899999877665433333222221110 0000000 00 00
Q ss_pred CCCCCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCC
Q 035554 272 MPTNGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTG 351 (562)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (562)
. ..... ... +... ..+++. +.......... ........++.+.|+.+..+.+ .
T Consensus 203 -~-~~~~~-~~~-------~~~~-~~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~ 255 (417)
T 2cfq_A 203 -A-NHSAF-SLK-------LALE-LFRQPK-LWFLSLYVIGV--------------SCTYDVFDQQFANFFTSFFATG-E 255 (417)
T ss_dssp -S-CCCCC-CHH-------HHHH-HTTCHH-HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTSSSH-H
T ss_pred -c-ccccc-cHH-------HHHH-HhcCCc-hhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcc-C
Confidence 0 00000 000 0000 000100 00000000000 0000011123344443221100 0
Q ss_pred CcccccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 035554 352 VSNFQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGG 431 (562)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~ 431 (562)
.. ....+.....+.+...+...+.. .+.+|+++ .+.+..+.++.+++.+...+.
T Consensus 256 ~~--~~~~g~~~~~~~~~~~~~~~~~g----~l~dr~g~--------~~~l~~~~~~~~~~~~~~~~~------------ 309 (417)
T 2cfq_A 256 QG--TRVFGYVTTMGELLNASIMFFAP----LIINRIGG--------KNALLLAGTIMSVRIIGSSFA------------ 309 (417)
T ss_dssp HH--THHHHHHHHHHHHHHHHHHHHHH----HHHHHHCH--------HHHHHHHHHHHHHHHHHHTTC------------
T ss_pred CC--hhHHHHHHHHHHHHHHHHHHHHH----HHHHHhcH--------HHHHHHHHHHHHHHHHHHHHh------------
Confidence 00 00001122222222222333333 34445543 224455666555554443221
Q ss_pred CCCccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhcCCCCCC
Q 035554 432 EETSSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIAL-SMSSTAIGTYVCSMILSVVMVLTTKNGKPGW 510 (562)
Q Consensus 432 ~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl-~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w 510 (562)
.+.+.++...++.+++.....+..+.+..|..|++.||++.++ ++...++|+.+++.+.+.+.+.
T Consensus 310 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~--------- 375 (417)
T 2cfq_A 310 -----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES--------- 375 (417)
T ss_dssp -----CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---------
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---------
Confidence 2344555566677777777777788999999999999999998 5888899999999998866541
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 035554 511 VPPNLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKS 547 (562)
Q Consensus 511 ~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 547 (562)
.++...|.+.+++++++.+..++..++.++
T Consensus 376 -------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 376 -------IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp -------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred -------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 134567788888888777776655554333
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-14 Score=145.76 Aligned_cols=179 Identities=14% Similarity=0.098 Sum_probs=152.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--cchHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYL--GRYLTCVTFQAF 111 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grk~~i~~~~~~ 111 (562)
.|.++.+.+..++..+.++++..+++.|+++.+|++..+.+.+.+...++..++.++.|+++|| + |||+.+.++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3678888888999999999999999999999899999999999999999999999999999999 8 999999888776
Q ss_pred HH-HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 112 SI-IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 112 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
.. ++.+++.+. +. .+.+.+.+..++.|++.+...+...++..|.+|+++ |++
T Consensus 330 ~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 382 (451)
T 1pw4_A 330 LVTIATIVYWMN---PA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 382 (451)
T ss_dssp HHHHHHHHTTSC---CT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHH
T ss_pred HHHHHHHHHHHh---cc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhh
Confidence 66 555554433 11 135667777788899888888888999999999888 999
Q ss_pred hHHHHHHHHhH-HHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 035554 191 FYSYFYIALNL-GCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 191 ~~~~~~~~~~l-g~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
++++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999998899999998888777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=134.45 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLF-AKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y-~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
|.++...+..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++|| +|||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 567778888888888899999999999 888889999999999999999999999999999999 799999999998888
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
++.+++.+. + +.+ ..+..++.+++.+...|...++..|.+|++ ++.+.+
T Consensus 337 ~~~~~~~~~---~--------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 337 ALCLISAFA---G--------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHC---C--------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHc---C--------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 887776664 2 122 344457788999999999999989988732 344555
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGY-WVLGFWICAGCDILAFSS 236 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~-~~~~f~i~~~~~~~~~~~ 236 (562)
+.. ...+|+.++|.+.|++.+..| ++..|++.+++.++..+.
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 544 567999999999999998888 999998876665554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=134.09 Aligned_cols=175 Identities=9% Similarity=-0.036 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCC---ChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQ---TNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF 111 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~---s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~ 111 (562)
|..+...+..++....++....++|.|+++.++. +....+...+...++..++.++.|+++|| +|||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHH
Confidence 4555555554555556666667788898876653 23445677777777888899999999999 7999999988888
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhh
Q 035554 112 SIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSF 191 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 191 (562)
.+++.+++.+. + +.+.+++..++.+++.+...+....+..|.+|++. |+++
T Consensus 299 ~~~~~~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~ 349 (417)
T 2cfq_A 299 MSVRIIGSSFA---T--------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATI 349 (417)
T ss_dssp HHHHHHHHTTC---C--------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHH
T ss_pred HHHHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence 77776655443 1 24555666666677766666777889999998877 8898
Q ss_pred HHH-HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 192 YSY-FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 192 ~~~-~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
.++ ++...++|+.++|.++|++.+..|+...|.+.+++.+++.++.+.
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 888 577888999999999999988788888998877777666665444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=129.69 Aligned_cols=185 Identities=12% Similarity=-0.024 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-----HHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCV-----TFQA 110 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~-----~~~~ 110 (562)
..+.+.+..++....+......++.|.++.++.+..+.+.+.....++..++.++.|+++|| +|||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 45566666677778888888899999999889887888888899999999999999999999 79987654 6666
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhh
Q 035554 111 FSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTS 190 (562)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 190 (562)
+..++.+++.+...... +....+.+.+.++.++.|++.+...|...++..|.+|++. |++
T Consensus 363 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 422 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQ 422 (491)
T ss_dssp HHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSS
T ss_pred HHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHH
Confidence 66666665555321000 0111245667778888999999989999999999999998 999
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 191 FYSYFYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 191 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+.++++...++|..++|.+.+++.+ .++...|.+.+++.+++.++.+...+
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876 46777787777666666555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-09 Score=112.61 Aligned_cols=182 Identities=13% Similarity=0.013 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 035554 36 CGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIG 115 (562)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~ 115 (562)
..........+..+..+........++.+..+.+............+...++.++++++.|| +|||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHH
Confidence 33333333344443333333344455566778888887777777888899999999999999 79999999998888877
Q ss_pred HHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH
Q 035554 116 LLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF 195 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 195 (562)
.+.+........ ........+.....+++. ...|....+.+|.+|++. |+++.++.
T Consensus 356 ~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~ 411 (491)
T 4gc0_A 356 MFSLGTAFYTQA-----------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIA 411 (491)
T ss_dssp HHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHH
T ss_pred HHHHHHHHhccc-----------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence 766654421111 111112222222223333 335677889999999999 99999999
Q ss_pred HHHHhHHHHHHhhhhhhcccc------cchhHHHHHHHHHHHHHHHHHHhcCc
Q 035554 196 YIALNLGCLFSETVLVYAENM------GYWVLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 196 ~~~~~lg~~~~~~~~~~l~~~------~~~~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+...++|+.+++.+.+.+.+. .++...|++.+++.+++.+..++..|
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 999999999998887766542 24455677766666666555444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.2e-11 Score=120.47 Aligned_cols=165 Identities=13% Similarity=-0.005 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH-HH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAF-SI 113 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~-~~ 113 (562)
|.++...+..++...+.+++..++|.|+++++|.+..+.+.+.+...++..++.++.|+++|| +|++ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 567788888888889999999999999999899999999999999999999999999999999 6872 2333322 22
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
.+..+...... + ..+.+.+++..++.+++.+...+...++..|.+| ++ |+++.+
T Consensus 276 ~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g 329 (375)
T 2gfp_A 276 AGLLMWIPDWF-G------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGA 329 (375)
T ss_dssp TSSSSSHHHHH-H------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHH
T ss_pred HHHHHHHHhhh-c------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHH
Confidence 22221111100 0 0135556677788899999999999999999887 55 899999
Q ss_pred HHHHHHhHHHHHHhhhhhhcccccchhHHHHHHHH
Q 035554 194 YFYIALNLGCLFSETVLVYAENMGYWVLGFWICAG 228 (562)
Q Consensus 194 ~~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~ 228 (562)
+++...++|..++|.+.+.+.+..+|...+++..+
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999999887778877776443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=93.65 Aligned_cols=150 Identities=14% Similarity=0.059 Sum_probs=95.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh----hhcccc----hHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCC
Q 035554 72 EASNTFSRWMGSLYLSSLMGAFLS----DSYLGR----YLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPH 143 (562)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~G~la----Dr~~Gr----k~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (562)
..+.+.....++..+..++.|++. || .|+ ++.+.++.++.+++.+++.+..... +..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~ 400 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIER-MGVKLTALRKMGAGIAITGLSWIVVGTIQLMM--------------DGG 400 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--------------TTT
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCC
Confidence 345544444555666666666664 45 343 2456677777777766655431000 000
Q ss_pred CCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHHHHHHhHHHHHHhhhhhhccccc--ch--
Q 035554 144 SPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYFYIALNLGCLFSETVLVYAENMG--YW-- 219 (562)
Q Consensus 144 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~~~~~l~~~~--~~-- 219 (562)
...+.+.++++.++.|++.+...+...++..|.+|++. |+++.++++...++|..++|.+.+.+.+.. +|
T Consensus 401 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~ 474 (524)
T 2xut_A 401 SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIV 474 (524)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 11245667778888999999999999999999999988 999999999999999999999999987632 23
Q ss_pred -------hHHHHHHHHHHHHHHHHHHhcCc
Q 035554 220 -------VLGFWICAGCDILAFSSLLSGTL 242 (562)
Q Consensus 220 -------~~~f~i~~~~~~~~~~~~~~~~~ 242 (562)
+..|++.+++.+++.++.+...+
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 475 QTGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23366666655555555444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.41 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.29 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=5.1e-25 Score=228.93 Aligned_cols=176 Identities=11% Similarity=0.070 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHh---hHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 38 TLLLVNQGLANLAFAG---VEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 38 ~~l~~~~~~~~~~~~~---~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|.++...++..+..|. ....+.++++ ++|+|..+.|++.+++.++..++.+++|+++|| +|||+++.++.++..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHH
Confidence 4444444444444432 2334445666 589999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+.++++++..... +.+.++++|++.|++.|...++..+++.|++|+++ |++++++
T Consensus 102 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~ 156 (447)
T d1pw4a_ 102 VMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSV 156 (447)
T ss_dssp HHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHH
T ss_pred HHhhccccchhhh-------------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccc
Confidence 8888776522111 36678999999999999999999999999999888 9999999
Q ss_pred HHHHHhHHHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHHHHhc
Q 035554 195 FYIALNLGCLFSETVLVYAENM-GYWVLGFWICAGCDILAFSSLLSG 240 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~-~~~~~~f~i~~~~~~~~~~~~~~~ 240 (562)
.+.+.++|..++|.+++.+.+. .+|++.|++.+++.++..++.+..
T Consensus 157 ~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 157 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHh
Confidence 9999999999999888876554 479998888777665555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.9e-22 Score=205.27 Aligned_cols=404 Identities=8% Similarity=-0.038 Sum_probs=231.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 035554 35 RCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSII 114 (562)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~ 114 (562)
|+.|.+.+..++..+++....+.++.|+++++|+|..+.|++.+++.++..++.++.|+++|| +||||+++++..+..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHH
Confidence 789999999999999998899999999999999999999999999999999999999999999 7999999999888888
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHH
Q 035554 115 GLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSY 194 (562)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 194 (562)
+..+..+....+. .....++.+.+.+.+.+...+.......+..+++ .+.+....+.
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 142 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGR 142 (417)
T ss_dssp THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHH
T ss_pred HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHH
Confidence 7777766521111 1112233344444444433333333333322211 1114566677
Q ss_pred HHHHHhHHHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHhhhcccCCC
Q 035554 195 FYIALNLGCLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLSGTLRYRHFKPSGNPLSRFSQVIVASLRKINLEMPT 274 (562)
Q Consensus 195 ~~~~~~lg~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (562)
.......+..++|.+++.+.+. +|+..+........+..++.....++.+..++++++ +.+. .
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~- 205 (417)
T d1pv7a_ 143 ARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA-------------VGAN--H- 205 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHH-------------HHSC--C-
T ss_pred Hhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhh-------------hhhh--c-
Confidence 7778888899999998888764 455555544444444444433333322111111100 0000 0
Q ss_pred CCCCccccchhhhhccCcccccccCchhHHHHHHhhhcccccccCCCCCccceeehhhhhhhhhhHHHHHhhhccCCCcc
Q 035554 275 NGGGLFEVHVREYEANGTRRILHTNDFKFLDRAAIMTSADITTNEDQNPNQWRLCTVTQVEEMLSLFVEQGAAMNTGVSN 354 (562)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (562)
........ .........+........ . .. .................. .
T Consensus 206 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-----------------~-~~-~~~~~~~~~~~~~~~~~~--~ 253 (417)
T d1pv7a_ 206 SAFSLKLA-----------LELFRQPKLWFLSLYVIG-----------------V-SC-TYDVFDQQFANFFTSFFA--T 253 (417)
T ss_dssp CCCCHHHH-----------HHHTTSSHHHHHHHHHHH-----------------H-HH-HHHHHHHHHHHHHTTSSS--C
T ss_pred cccccccc-----------ccccccccccchhhhhHH-----------------H-HH-HHHhhhcccccccccccc--c
Confidence 00000000 000000000000000000 0 00 000000000000000000 0
Q ss_pred cccCccccccchhHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 035554 355 FQIPPASMTAFDIVSTTAFILLYDKLIVPLYLKVAKRRPKTPSELQRVGIGLAIATVAMIIAGIVEQRRLKYASFGGEET 434 (562)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~i~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (562)
........ ........+...+...+...+.+|.+ +.+.+..+.++.+++.+...+.
T Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~--------~~~~~~~~~~~~~~~~~~~~~~--------------- 309 (417)
T d1pv7a_ 254 GEQGTRVF-GYVTTMGELLNASIMFFAPLIINRIG--------GKNALLLAGTIMSVRIIGSSFA--------------- 309 (417)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTTHHHHHHHHC--------HHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred cccchhhh-cccccccccccccchhhhhhhhcccc--------cccchhhhHHHHHHhhhccccc---------------
Confidence 00000000 01111111111222222223333432 3445666767666666655442
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhHHHHHHhhCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhhcCCCCCCCCC
Q 035554 435 SSLSIFWQTPQYVLLGVSEAFVYVAQMEFFASQIPNGLKSLGIALS-MSSTAIGTYVCSMILSVVMVLTTKNGKPGWVPP 513 (562)
Q Consensus 435 ~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gl~-~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~ 513 (562)
.+.+...+..++.+++.+...+...++..+.+|++.||++.|+. ++...+|..+++.+.|.+.+..
T Consensus 310 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~----------- 376 (417)
T d1pv7a_ 310 --TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------- 376 (417)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-----------
T ss_pred --cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 46677778889999999999999999999999999999999975 5678899999999988776532
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Q 035554 514 NLNDGHLDRFFFLSATVTAMNLGVFVVCARRYKSISLQKQ 553 (562)
Q Consensus 514 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (562)
+++..|++.++++++..++.++..++.+..+++++
T Consensus 377 -----g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~ 411 (417)
T d1pv7a_ 377 -----GFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRR 411 (417)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhHh
Confidence 34567888888888887777777665555544433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=6.9e-13 Score=136.11 Aligned_cols=181 Identities=14% Similarity=0.071 Sum_probs=142.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 035554 34 WRCGTLLLVNQGLANLAFAGVEVNMVLFAKSVLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSI 113 (562)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~ 113 (562)
.|.++.+....++.....+++..+.+.|+.+.++.+..+.+.......++..++.+++|+++|| ++|++..........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 326 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHH
Confidence 4677888888889999999999999999999999999999999999999999999999999999 688765554444333
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCcCCCCCCchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHH
Q 035554 114 IGLLGLSFATQSFLLRPHGCGKIGQLCDPHSPAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYS 193 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 193 (562)
+...........+ ..+.+...+..++.|++.+...+....+..|.+|++. |+++.+
T Consensus 327 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g 382 (447)
T d1pw4a_ 327 LVTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAG 382 (447)
T ss_dssp HHHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHH
T ss_pred HHHHHHHHHHhcc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 3222222221101 1246667777778888888888999999999999877 899999
Q ss_pred HHHHHHhHH-HHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 035554 194 YFYIALNLG-CLFSETVLVYAENMGYWVLGFWICAGCDILAFSSLLS 239 (562)
Q Consensus 194 ~~~~~~~lg-~~~~~~~~~~l~~~~~~~~~f~i~~~~~~~~~~~~~~ 239 (562)
+.+...+++ ..++|.+.|++.+.+||+..|++.+++.+++.++...
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 998888874 5668999999999999999998877766666555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1e-12 Score=132.10 Aligned_cols=146 Identities=9% Similarity=-0.051 Sum_probs=121.5
Q ss_pred hhCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCcCCCCC
Q 035554 65 VLRQTNAEASNTFSRWMGSLYLSSLMGAFLSDSYLGRYLTCVTFQAFSIIGLLGLSFATQSFLLRPHGCGKIGQLCDPHS 144 (562)
Q Consensus 65 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grk~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (562)
..+.+....+.......++..++.++.|++.|| +|+|+++.++.++..++.+++.+. +
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~---~------------------ 310 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFA---T------------------ 310 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTC---C------------------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhccccc---c------------------
Confidence 344455667778888889999999999999999 799999999999888888877665 2
Q ss_pred CchHHHHHHHHHHHHHhcccchhhhhhhhhccCCCCCchhhhhhhhhHHHH-HHHHhHHHHHHhhhhhhcccccchhHHH
Q 035554 145 PAETAIFYISIYLFALGIGAPEPALATFGADQFDEEDPKEKKSKTSFYSYF-YIALNLGCLFSETVLVYAENMGYWVLGF 223 (562)
Q Consensus 145 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~lg~~~~~~~~~~l~~~~~~~~~f 223 (562)
+.+.+++..++.|++.+...+...+++.|.+|++. |++..++. +....+|..++|.+.|++.+..|++..|
T Consensus 311 --~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~ 382 (417)
T d1pv7a_ 311 --SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred --ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 36777888888999999999999999999999888 89999985 5567799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 035554 224 WICAGCDILAFSSLLSG 240 (562)
Q Consensus 224 ~i~~~~~~~~~~~~~~~ 240 (562)
++.+++.++..++..+.
T Consensus 383 ~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 383 LVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88777666555554433
|