Citrus Sinensis ID: 035575

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLAKL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHcccEEEEEEcccccEEEEEEccccccEEEEEccccccccccHHHHHHcccccccHHHHHHHHHHHHHccEEEEEEcHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHcccEEEEEEcccccEEEEEEccccccEEEEEccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIvdqrgvrrisgepsgrSIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLAKL
Flexible Loop (DISEMBL)
MSASSLVAESVWKSiestrsvtedQLSILHFlfgknieratrivdqrgvrrisgepsgrsifkvvgesrRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLAKL
Low Complexity Region (SEG)
MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLAKL
Disordered region (IsUnstruct)
***********W********VTEDQLSILHFLFGKNIERATRIVDQRGVRRI*******SIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLL***
Disordered Region (DISOPRED)
****SLV*ESVWKSIE****VTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLAKL
Disordered Region (DISEMBL)
**********VWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLAKL
Disordered Region (DISPRO)
****SLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLAKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLAKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
A4FVI0	140	Zinc finger SWIM domain-c	yes	no	0.924	0.871	0.384	7e-17
Q19AV6	140	Zinc finger SWIM domain-c	yes	no	0.909	0.857	0.352	6e-15
Q9CWQ2	152	Zinc finger SWIM domain-c	yes	no	0.856	0.743	0.358	7e-14
Q55FI7	156	Zinc finger SWIM domain-c	yes	no	0.825	0.698	0.271	3e-09

>sp|A4FVI0|ZSWM7_DANRE Zinc finger SWIM domain-containing protein 7 OS=Danio rerio GN=zswim7 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 8/130 (6%)

Query: 7   VAESVWKSIESTRS----VTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIF 62
           VAE + K ++ T S    + +D L  L F+FG    +A  +VDQ  V  +S  PSGR  F
Sbjct: 8   VAEQLLKDLQRTYSEIKQIPDDLLIALRFVFGPCALQALDLVDQHSVTCVSS-PSGRKAF 66

Query: 63  KVVGESRRKEEYLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVS 121
           +V+G S R   Y CF   +YC C +F + ++ + E L CKH LA  L+ A+G C +  VS
Sbjct: 67  QVLGGSGRL--YTCFTSCHYCPCPAFSFTVLRRNESLMCKHLLAVILSQAMGLCQQEQVS 124

Query: 122 DEQLALLLAK 131
           D+Q+  +L++
Sbjct: 125 DQQMTHILSR 134

Involved in early stages of the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents.
Danio rerio (taxid: 7955)

>sp|Q19AV6|ZSWM7_HUMAN Zinc finger SWIM domain-containing protein 7 OS=Homo sapiens GN=ZSWIM7 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 75/125 (60%), Gaps = 5/125 (4%)

Query: 6   LVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVV 65
           L++E      ES R + ++ L  L FLFG +  +A  +VD++ +  IS  PSGR +++V+
Sbjct: 12  LLSEMAAAVQESAR-IPDEYLLSLKFLFGSSATQALDLVDRQSITLISS-PSGRRVYQVL 69

Query: 66  GESRRKEEYLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQ 124
           G S +   Y C A  +YC+C +F + ++ K + + CKH LA  L+  +  C +++VSD+Q
Sbjct: 70  GSSSKT--YTCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQLSVSDKQ 127

Query: 125 LALLL 129
           L  +L
Sbjct: 128 LTDIL 132

Involved in early stages of the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents.

Homo sapiens (taxid: 9606)

>sp|Q9CWQ2|ZSWM7_MOUSE Zinc finger SWIM domain-containing protein 7 OS=Mus musculus GN=Zswim7 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 4/117 (3%)

Query: 14  SIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEE 73
           ++  +  + ++ L  L F+FG +  +A  +VD+  V  IS  PSGR +++V+G S +   
Sbjct: 19  AVRDSARIPDELLLSLEFVFGSSAIQALDLVDRESVTLISS-PSGRRVYQVLGSSGKT-- 75

Query: 74  YLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLL 129
           Y C A  +YC+C +F + ++ K + L CKH LA  L+  L  C +++VSD+QL  LL
Sbjct: 76  YTCLASCHYCSCPAFSFSVLRKSDSLLCKHLLAIYLSQLLRNCQQLHVSDKQLTDLL 132

Involved in early stages of the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents.

Mus musculus (taxid: 10090)

>sp|Q55FI7|ZSWM7_DICDI Zinc finger SWIM domain-containing protein 7 homolog OS=Dictyostelium discoideum GN=zswim7 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 66/114 (57%), Gaps = 5/114 (4%)

Query: 18  TRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCF 77
           T +++E+ L  L+++F + I  +  ++D+  + +   +PS R  +  V E R+  +Y+C 
Sbjct: 28  TNTISEETLLSLYYIFDQTIFASLELIDKELITKYVFQPSNRYFY--VVEGRKGAKYMCL 85

Query: 78  AE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALG--ACVEVNVSDEQLALL 128
            + +YC+C SF + ++ K + + CKHQ+++ LA  +     +E + S+ Q  +L
Sbjct: 86  IQGDYCSCPSFNFSVLLKSDSVYCKHQISSILAEIISNVKVIEFDDSEYQSQIL 139

May be involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
225429345	132	PREDICTED: zinc finger SWIM domain-conta	1.0	1.0	0.833	3e-60
449469114	132	PREDICTED: zinc finger SWIM domain-conta	1.0	1.0	0.818	4e-59
255555245	132	conserved hypothetical protein [Ricinus	1.0	1.0	0.818	6e-59
255556870	132	conserved hypothetical protein [Ricinus	1.0	1.0	0.795	6e-57
356517808	132	PREDICTED: zinc finger SWIM domain-conta	1.0	1.0	0.772	7e-55
224105661	132	predicted protein [Populus trichocarpa]	1.0	1.0	0.840	2e-54
357470835	130	Zinc finger SWIM domain-containing prote	0.969	0.984	0.75	4e-53
356510231	132	PREDICTED: zinc finger SWIM domain-conta	1.0	1.0	0.727	7e-52
357456089	131	Zinc finger SWIM domain-containing prote	0.992	1.0	0.727	3e-51
21592474	132	unknown [Arabidopsis thaliana]	1.0	1.0	0.681	9e-50

>gi|225429345|ref|XP_002272459.1| PREDICTED: zinc finger SWIM domain-containing protein 7 [Vitis vinifera] gi|296083085|emb|CBI22489.3| unnamed protein product [Vitis vinifera]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/132 (83%), Positives = 123/132 (93%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           M  SSLVAE+VWK IEST SVT+DQ+SI+HFLFGKN ERATRIVDQRGV+RI GEPSGR 
Sbjct: 1   MGPSSLVAETVWKEIESTHSVTDDQISIMHFLFGKNFERATRIVDQRGVKRIVGEPSGRW 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+VVGESR+KEEY CFAE+YCACYSFFYDIVN+GEQLCCKHQLAARLA+++GACVEV V
Sbjct: 61  IFQVVGESRKKEEYFCFAEHYCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACVEVKV 120

Query: 121 SDEQLALLLAKL 132
           SDEQLALLL+KL
Sbjct: 121 SDEQLALLLSKL 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469114|ref|XP_004152266.1| PREDICTED: zinc finger SWIM domain-containing protein 7-like [Cucumis sativus] gi|449484320|ref|XP_004156850.1| PREDICTED: zinc finger SWIM domain-containing protein 7-like [Cucumis sativus]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/132 (81%), Positives = 123/132 (93%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           MSAS +VAE+VWK IESTR VT+DQLSILHFLFGKN ERATRIVDQRGV++ISG PS RS
Sbjct: 1   MSASIVVAEAVWKQIESTRLVTDDQLSILHFLFGKNFERATRIVDQRGVKKISGHPSTRS 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+VVGESRRKEEYLCF EN+CACYSFFYDIVN+GEQLCCKHQLAARLA+++GAC+EV V
Sbjct: 61  IFQVVGESRRKEEYLCFPENFCACYSFFYDIVNRGEQLCCKHQLAARLAASVGACIEVKV 120

Query: 121 SDEQLALLLAKL 132
           SDE+LA+LL+ L
Sbjct: 121 SDEELAILLSNL 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555245|ref|XP_002518659.1| conserved hypothetical protein [Ricinus communis] gi|223542040|gb|EEF43584.1| conserved hypothetical protein [Ricinus communis]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 108/132 (81%), Positives = 120/132 (90%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           M  S+LVA++VWKS+E TRSVT+DQLSILHFLFGKN ERATRIVDQRGV+RISGEPSGR 
Sbjct: 1   MPISNLVADTVWKSVELTRSVTDDQLSILHFLFGKNFERATRIVDQRGVKRISGEPSGRC 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+VVGESRRKE+Y CF E+YCACYSFFYD VN+GEQLCCKHQLAARLAS LG CV+V V
Sbjct: 61  IFQVVGESRRKEDYFCFPEHYCACYSFFYDTVNRGEQLCCKHQLAARLASVLGTCVDVAV 120

Query: 121 SDEQLALLLAKL 132
           SDE+LALLL KL
Sbjct: 121 SDEELALLLVKL 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556870|ref|XP_002519468.1| conserved hypothetical protein [Ricinus communis] gi|223541331|gb|EEF42882.1| conserved hypothetical protein [Ricinus communis]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 105/132 (79%), Positives = 117/132 (88%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           M  S+L A++VWKS+E TRSVT+DQLSILH LFGKN ERATRIVDQRGV+RI+GEPSGR 
Sbjct: 1   MPISNLFADTVWKSVELTRSVTDDQLSILHLLFGKNFERATRIVDQRGVKRITGEPSGRC 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+VVGESRRKE+Y CF E+YCACYSFFYD VN GEQLCCKHQLAARLAS LG CV+V V
Sbjct: 61  IFQVVGESRRKEDYFCFPEHYCACYSFFYDTVNGGEQLCCKHQLAARLASVLGTCVDVAV 120

Query: 121 SDEQLALLLAKL 132
           SDE+LALLL KL
Sbjct: 121 SDEELALLLVKL 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517808|ref|XP_003527578.1| PREDICTED: zinc finger SWIM domain-containing protein 7-like [Glycine max]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 118/132 (89%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           MSASSLVAE+VWK IEST SV +DQL  LHFLFGKN E ATRIVDQRGV +IS  PSGR 
Sbjct: 1   MSASSLVAEAVWKEIESTHSVNDDQLWTLHFLFGKNFEGATRIVDQRGVSKISAHPSGRF 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+V GESRRK++YLCFAEN+CACYSFFYD+VN+GEQLCCKHQLAARLA++LG+ VEV V
Sbjct: 61  IFQVTGESRRKDQYLCFAENFCACYSFFYDVVNRGEQLCCKHQLAARLAASLGSYVEVKV 120

Query: 121 SDEQLALLLAKL 132
           SDE+LA+LL+K+
Sbjct: 121 SDEELAVLLSKV 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105661|ref|XP_002313892.1| predicted protein [Populus trichocarpa] gi|222850300|gb|EEE87847.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 127/132 (96%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           MSASSLVA++VWK+IEST+SVTE+QLSILHFLFGKN+ERAT+IVDQRGV++ISG+PSGRS
Sbjct: 1   MSASSLVADTVWKTIESTQSVTEEQLSILHFLFGKNLERATKIVDQRGVKKISGQPSGRS 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+VVGESRRKEEY CF E+YCACYSFFYDIVN+GEQLCCKHQLAARLA+ALGA ++V V
Sbjct: 61  IFQVVGESRRKEEYFCFPEHYCACYSFFYDIVNRGEQLCCKHQLAARLAAALGAFIDVKV 120

Query: 121 SDEQLALLLAKL 132
           SDEQLALLL KL
Sbjct: 121 SDEQLALLLIKL 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470835|ref|XP_003605702.1| Zinc finger SWIM domain-containing protein [Medicago truncatula] gi|355506757|gb|AES87899.1| Zinc finger SWIM domain-containing protein [Medicago truncatula]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/128 (75%), Positives = 115/128 (89%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           MSAS+LV + VWK IEST++V +DQL ILHFLFGKN E ATRIVDQRGV+RISG PSGR 
Sbjct: 1   MSASNLVTDEVWKQIESTQTVNDDQLYILHFLFGKNFEGATRIVDQRGVKRISGNPSGRF 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+V GESR+K++YLCFAEN+CACYSFFYD+VN+GEQLCCKHQLAAR+A++LG+ VEV V
Sbjct: 61  IFQVTGESRKKDQYLCFAENFCACYSFFYDVVNRGEQLCCKHQLAARVAASLGSYVEVKV 120

Query: 121 SDEQLALL 128
           SDE+LA +
Sbjct: 121 SDEELAFV 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510231|ref|XP_003523843.1| PREDICTED: zinc finger SWIM domain-containing protein 7-like [Glycine max]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 96/132 (72%), Positives = 115/132 (87%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           MSASS+VAE++WK IEST +V +D L  LHFLFGKN E ATRIVD RGV +IS  PSGR 
Sbjct: 1   MSASSVVAETIWKEIESTHTVNDDHLWSLHFLFGKNFEGATRIVDLRGVSKISAHPSGRF 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+V GES+RK++YLCFAEN+CACYSFFYD+VN+GEQLCCKHQLAARLA++LG+ VEV V
Sbjct: 61  IFQVTGESQRKDQYLCFAENFCACYSFFYDVVNRGEQLCCKHQLAARLAASLGSYVEVKV 120

Query: 121 SDEQLALLLAKL 132
           SDE+LA LL+K+
Sbjct: 121 SDEELAALLSKI 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456089|ref|XP_003598325.1| Zinc finger SWIM domain-containing protein [Medicago truncatula] gi|355487373|gb|AES68576.1| Zinc finger SWIM domain-containing protein [Medicago truncatula]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/132 (72%), Positives = 119/132 (90%), Gaps = 1/132 (0%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           MSAS+LVA+ VWK IEST++   +  ++LHFLFGKN E ATRIVDQRGV++ISG+PSGR 
Sbjct: 1   MSASNLVADQVWKQIESTQTGI-NLCNVLHFLFGKNFEGATRIVDQRGVKKISGDPSGRF 59

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+V GESR+K++YLCFAEN+CACYSFFYD+VN+GEQLCCKHQLAARLA++LG+ VEV V
Sbjct: 60  IFQVTGESRKKDQYLCFAENFCACYSFFYDVVNRGEQLCCKHQLAARLAASLGSYVEVKV 119

Query: 121 SDEQLALLLAKL 132
           SDE+LALLL+K+
Sbjct: 120 SDEELALLLSKI 131

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592474|gb|AAM64425.1| unknown [Arabidopsis thaliana]

 Score =  201 bits (510), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 90/132 (68%), Positives = 116/132 (87%)

Query: 1   MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
           M+ + LVA++VW +IEST SVTE+QLSILH LFGKN+E+ATRI+D+RGV++ISG PSGRS
Sbjct: 1   MNVTLLVADAVWSNIESTGSVTEEQLSILHLLFGKNLEKATRIIDKRGVKKISGLPSGRS 60

Query: 61  IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
           IF+VVGES+++EEYLCF  +YC CYSFFYD+V++GE  CCKHQLAARLAS+LG   E+ V
Sbjct: 61  IFQVVGESQKREEYLCFPGDYCGCYSFFYDVVSRGEHPCCKHQLAARLASSLGTYNEIEV 120

Query: 121 SDEQLALLLAKL 132
           SD+ LAL+L+K+
Sbjct: 121 SDDHLALMLSKI 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:505006552	132	SSN2 "suppressor of sni1 2" [A	1.0	1.0	0.674	1.8e-46
UNIPROTKB|E1BR46	140	ZSWIM7 "Uncharacterized protei	0.946	0.892	0.404	1.5e-19
ZFIN|ZDB-GENE-030131-4255	140	zswim7 "zinc finger, SWIM-type	0.946	0.892	0.392	7.5e-18
UNIPROTKB|F1MPX2	145	ZSWIM7 "Uncharacterized protei	0.810	0.737	0.387	8.6e-17
UNIPROTKB|Q19AV6	140	ZSWIM7 "Zinc finger SWIM domai	0.924	0.871	0.356	1.4e-16
UNIPROTKB|E2RG87	142	ZSWIM7 "Uncharacterized protei	0.856	0.795	0.341	2.9e-16
MGI|MGI:1916997	152	Zswim7 "zinc finger SWIM-type	0.856	0.743	0.358	9.8e-16
RGD|1310324	152	Zswim7 "zinc finger, SWIM-type	0.909	0.789	0.352	2e-15
DICTYBASE|DDB_G0268092	156	DDB_G0268092 "SWIM-type zinc f	0.825	0.698	0.289	5.8e-11

TAIR|locus:505006552 SSN2 "suppressor of sni1 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 89/132 (67%), Positives = 115/132 (87%)

Query:     1 MSASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRS 60
             M+ + LVA++VW +IEST SVTE+QLSIL  LFGKN+E+ATRI+D+RGV++ISG PSGRS
Sbjct:     1 MNVTLLVADAVWSNIESTGSVTEEQLSILQLLFGKNLEKATRIIDKRGVKKISGLPSGRS 60

Query:    61 IFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNV 120
             IF+VVGES+++EEYLCF  +YC CYSFFYD+V++GE  CCKHQLAARLAS+LG   E+ V
Sbjct:    61 IFQVVGESQKREEYLCFPGDYCGCYSFFYDVVSRGEHQCCKHQLAARLASSLGTYNEIEV 120

Query:   121 SDEQLALLLAKL 132
             SD+ LAL+L+K+
Sbjct:   121 SDDHLALMLSKI 132

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

UNIPROTKB|E1BR46 ZSWIM7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 53/131 (40%), Positives = 82/131 (62%)

Query:     3 ASSLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIF 62
             A  L+ E + K+ + T  V +D L  L F+FG +   A  +VDQR V R+   PSGR+ +
Sbjct:     9 AEELLKE-IRKAFQETSHVPDDLLLGLKFIFGPSAVPALDLVDQRSVTRVVS-PSGRTAY 66

Query:    63 KVVGESRRKEEYLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVS 121
             +V+G S +   Y C++  ++C C +F + ++ K E L CKH LA  L+ A+GAC E+ VS
Sbjct:    67 QVLGSSGKL--YTCYSSCHFCTCPAFGFTVLQKSESLLCKHILAVYLSQAMGACQELTVS 124

Query:   122 DEQL-ALLLAK 131
             +EQL ++LLA+
Sbjct:   125 EEQLTSILLAE 135

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0097196 "Shu complex" evidence=IEA

ZFIN|ZDB-GENE-030131-4255 zswim7 "zinc finger, SWIM-type containing 7" [Danio rerio (taxid:7955)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 53/135 (39%), Positives = 78/135 (57%)

Query:     4 SSLV--AESVWKSIESTRS----VTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPS 57
             SSLV  AE + K ++ T S    + +D L  L F+FG    +A  +VDQ  V  +S  PS
Sbjct:     3 SSLVSVAEQLLKDLQRTYSEIKQIPDDLLIALRFVFGPCALQALDLVDQHSVTCVSS-PS 61

Query:    58 GRSIFKVVGESRRKEEYLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACV 116
             GR  F+V+G S R   Y CF   +YC C +F + ++ + E L CKH LA  L+ A+G C 
Sbjct:    62 GRKAFQVLGGSGRL--YTCFTSCHYCPCPAFSFTVLRRNESLMCKHLLAVILSQAMGLCQ 119

Query:   117 EVNVSDEQLALLLAK 131
             +  VSD+Q+  +L++
Sbjct:   120 QEQVSDQQMTHILSR 134

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|F1MPX2 ZSWIM7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 43/111 (38%), Positives = 69/111 (62%)

Query:    21 VTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCFAE- 79
             + ++ L  L F+FG +  +A  +VD+R V  IS  PSGR +++V+G S R   Y C A  
Sbjct:    31 IPDEHLLSLKFVFGSSAVQALDLVDRRSVTLISS-PSGRRVYQVLGSSGRT--YTCLASC 87

Query:    80 NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLLA 130
             +YC+C +F + ++ KG+ L CKH LA  L+     C +++VSD+QL  +L+
Sbjct:    88 HYCSCPAFAFSVLRKGDSLLCKHLLAVYLSQITRTCQQLSVSDKQLTDILS 138

GO:0097196 "Shu complex" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q19AV6 ZSWIM7 "Zinc finger SWIM domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 46/129 (35%), Positives = 77/129 (59%)

Query:     6 LVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVV 65
             L++E      ES R + ++ L  L FLFG +  +A  +VD++ +  IS  PSGR +++V+
Sbjct:    12 LLSEMAAAVQESAR-IPDEYLLSLKFLFGSSATQALDLVDRQSITLISS-PSGRRVYQVL 69

Query:    66 GESRRKEEYLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQ 124
             G S +   Y C A  +YC+C +F + ++ K + + CKH LA  L+  +  C +++VSD+Q
Sbjct:    70 GSSSKT--YTCLASCHYCSCPAFAFSVLRKSDSILCKHLLAVYLSQVMRTCQQLSVSDKQ 127

Query:   125 LA--LLLAK 131
             L   LL+ K
Sbjct:   128 LTDILLMEK 136

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0050821 "protein stabilization" evidence=IMP

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

GO:0097196 "Shu complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2RG87 ZSWIM7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 40/117 (34%), Positives = 71/117 (60%)

Query:    14 SIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEE 73
             +++    + ++ LS L F+FG +  +A  +VD++ +  IS  PSGR +++V+G S   E 
Sbjct:    20 AVQEEARIPDEHLSSLKFIFGPSAIQALDLVDRQSITLISS-PSGRRVYQVLGSSG--ET 76

Query:    74 YLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLL 129
             Y C A  +YC+C +F + ++ K + L CKH LA  ++  +  C ++ VSD+QL  +L
Sbjct:    77 YTCLASCHYCSCPAFAFSVLRKSDSLLCKHLLAVYVSQVMRTCRQLKVSDKQLTDIL 133

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1916997 Zswim7 "zinc finger SWIM-type containing 7" [Mus musculus (taxid:10090)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 42/117 (35%), Positives = 70/117 (59%)

Query:    14 SIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEE 73
             ++  +  + ++ L  L F+FG +  +A  +VD+  V  IS  PSGR +++V+G S +   
Sbjct:    19 AVRDSARIPDELLLSLEFVFGSSAIQALDLVDRESVTLISS-PSGRRVYQVLGSSGKT-- 75

Query:    74 YLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQLALLL 129
             Y C A  +YC+C +F + ++ K + L CKH LA  L+  L  C +++VSD+QL  LL
Sbjct:    76 YTCLASCHYCSCPAFSFSVLRKSDSLLCKHLLAIYLSQLLRNCQQLHVSDKQLTDLL 132

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=ISO

GO:0097196 "Shu complex" evidence=ISO

RGD|1310324 Zswim7 "zinc finger, SWIM-type containing 7" [Rattus norvegicus (taxid:10116)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 44/125 (35%), Positives = 74/125 (59%)

Query:     6 LVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVV 65
             L++E +  ++  +  + ++ L  L F+FG +  +A  +VD+  V  IS  PSGR +++V+
Sbjct:    12 LLSE-IAAAVRDSARIPDELLLSLKFVFGSSAIQALDLVDRESVTLISS-PSGRRVYQVL 69

Query:    66 GESRRKEEYLCFAE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALGACVEVNVSDEQ 124
             G S     Y C A  +YC+C +F + ++ K + L CKH LA  L+  L  C +++VSD+Q
Sbjct:    70 GSSGTT--YTCLASCHYCSCPAFSFSVLRKSDSLLCKHLLAIYLSQLLRNCQQLSVSDKQ 127

Query:   125 LALLL 129
             L  LL
Sbjct:   128 LTDLL 132

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=ISO

GO:0097196 "Shu complex" evidence=ISO

DICTYBASE|DDB_G0268092 DDB_G0268092 "SWIM-type zinc finger domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 33/114 (28%), Positives = 67/114 (58%)

Query:    18 TRSVTEDQLSILHFLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLCF 77
             T +++E+ L  L+++F + I  +  ++D+  + +   +PS R  F VV E R+  +Y+C 
Sbjct:    28 TNTISEETLLSLYYIFDQTIFASLELIDKELITKYVFQPSNR-YFYVV-EGRKGAKYMCL 85

Query:    78 AE-NYCACYSFFYDIVNKGEQLCCKHQLAARLASALG--ACVEVNVSDEQLALL 128
              + +YC+C SF + ++ K + + CKHQ+++ LA  +     +E + S+ Q  +L
Sbjct:    86 IQGDYCSCPSFNFSVLLKSDSVYCKHQISSILAEIISNVKVIEFDDSEYQSQIL 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      132       132   0.00091  102 3  11 22  0.36    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.26u 0.22s 11.48t   Elapsed:  00:00:01
  Total cpu time:  11.26u 0.22s 11.48t   Elapsed:  00:00:01
  Start:  Thu May  9 22:25:03 2013   End:  Thu May  9 22:25:04 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4FVI0	ZSWM7_DANRE	No assigned EC number	0.3846	0.9242	0.8714	yes	no
Q19AV6	ZSWM7_HUMAN	No assigned EC number	0.352	0.9090	0.8571	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
COG5431	117	Uncharacterized metal-binding protein [Function un	99.71
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.35
COG4279	266	Uncharacterized conserved protein [Function unknow	97.42
COG4715	587	Uncharacterized conserved protein [Function unknow	97.4
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	95.58
PRK13717	128	conjugal transfer protein TrbI; Provisional	83.03

>COG5431 Uncharacterized metal-binding protein [Function unknown]

Probab=99.71  E-value=1.3e-17  Score=116.44  Aligned_cols=91  Identities=19%  Similarity=0.341  Sum_probs=80.1

Q ss_pred             HHHHHHHHhc-CCeEEEeeCCCcceEEEEeccCCCCceeEEccCCCccCccchhhhhccCCCccchHHHHHHHHHHhCCe
Q 035575           37 IERATRIVDQ-RGVRRISGEPSGRSIFKVVGESRRKEEYLCFAENYCACYSFFYDIVNKGEQLCCKHQLAARLASALGAC  115 (132)
Q Consensus        37 l~~Al~lld~-~~V~~~~~~~s~r~~y~V~g~s~~~~~Y~v~~~~~CsC~~F~~~vl~~~~~~~CKHlLA~~la~~lg~~  115 (132)
                      +.+|+..+.+ |+........+.-.+|++.|.   .++|++ .++|||||+|..+|+.+|..+ |+|+++++.|...|++
T Consensus        10 llka~~v~g~~Grfv~l~l~~~~~~~fVyvG~---~rdYIl-~~gfCSCp~~~~svvl~Gk~~-C~Hi~glk~A~~~gk~   84 (117)
T COG5431          10 LLKALLVFGKRGRFVFLYLKRSKVKFFVYVGK---ERDYIL-EGGFCSCPDFLGSVVLKGKSP-CAHIIGLKVAKITGKY   84 (117)
T ss_pred             HhhHHHHhcccCcEEEEeeCCceEEEEEEEcc---ccceEE-EcCcccCHHHHhHhhhcCccc-chhhhheeeeeecCcE
Confidence            5677777776 888888766665669999998   789999 677999999999999999765 9999999999999999


Q ss_pred             EEEEeCHHHHHHHHhcC
Q 035575          116 VEVNVSDEQLALLLAKL  132 (132)
Q Consensus       116 ~~~~v~d~~~~~ll~~~  132 (132)
                      ..+++...++.++|.|+
T Consensus        85 ~~I~~y~~d~~~Il~e~  101 (117)
T COG5431          85 DYIDAYYVDYPDILREK  101 (117)
T ss_pred             EEEEEecccHHHHHHHH
Confidence            99999999999999874

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.35  E-value=2.9e-07  Score=53.42  Aligned_cols=27  Identities=33%  Similarity=0.550  Sum_probs=23.2

Q ss_pred             cCCCccCccchhhhhccCCCccchHHHHHHHHH
Q 035575           78 AENYCACYSFFYDIVNKGEQLCCKHQLAARLAS  110 (132)
Q Consensus        78 ~~~~CsC~~F~~~vl~~~~~~~CKHlLA~~la~  110 (132)
                      ..++||||+|.+.      ..+|||++|+.++.
T Consensus        13 ~~~~CsC~~~~~~------~~~CkHi~av~~~~   39 (40)
T PF04434_consen   13 EQASCSCPYFQFR------GGPCKHIVAVLLAL   39 (40)
T ss_pred             cccEeeCCCcccc------CCcchhHHHHHHhh
Confidence            5889999999964      67999999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>COG4279 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.0006  Score=54.61  Aligned_cols=89  Identities=22%  Similarity=0.288  Sum_probs=60.0

Q ss_pred             HhhChhHHHHHHHHhcCCeEEEeeCCCcceEEEEeccCC-----------------------------------CC----
Q 035575           31 FLFGKNIERATRIVDQRGVRRISGEPSGRSIFKVVGESR-----------------------------------RK----   71 (132)
Q Consensus        31 ~lf~~~l~~Al~lld~~~V~~~~~~~s~r~~y~V~g~s~-----------------------------------~~----   71 (132)
                      +.|+.|+.++....-+|.|+.+.. ..|+..-.|.|+-.                                   .|    
T Consensus        24 ~~d~gRlsRgr~YaR~GnV~si~i-~~g~V~A~VqGS~~~pY~vti~~~~~s~e~w~~vi~~ia~ka~~aakLL~gemP~  102 (266)
T COG4279          24 FRDDGRLSRGRSYARNGNVTSIQI-LEGKVTALVQGSEEEPYVVTIGIPTFSKEQWREVIATIAQKANYAAKLLSGEMPE  102 (266)
T ss_pred             hcccchHHHhHHHHhcCceEEEEe-ecceEEEEEecCCCCCeEEEEecCCCcHHHHHHHHHHHHhhhHHHHHHhcCCCCc
Confidence            456789999999999999999874 45677777777620                                   00    


Q ss_pred             --ceeEE------ccC------CCccCccchhhhhccCCCccchHHHHHHH--HHHhCC-----eEEEEeCHHHHHHHH
Q 035575           72 --EEYLC------FAE------NYCACYSFFYDIVNKGEQLCCKHQLAARL--ASALGA-----CVEVNVSDEQLALLL  129 (132)
Q Consensus        72 --~~Y~v------~~~------~~CsC~~F~~~vl~~~~~~~CKHlLA~~l--a~~lg~-----~~~~~v~d~~~~~ll  129 (132)
                        .+.++      ||.      .-||||+++.         +|||+-|+.+  |+.+..     ++-.-.+.+++...|
T Consensus       103 sIedvf~~~GL~LfP~t~~dl~~dCSCPD~an---------PCKHi~AvyY~lae~f~~dPflif~lRG~~k~eL~a~l  172 (266)
T COG4279         103 SIEDVFVGNGLSLFPFTLRDLSTDCSCPDYAN---------PCKHIAAVYYLLAEKFDEDPFLIFKLRGRNKEELLALL  172 (266)
T ss_pred             hHHHHHHhcCcccCCCchhhcccccCCCCccc---------chHHHHHHHHHHHHHhccCCeeeeeecCCCHHHHHHHH
Confidence              01111      242      4699999983         7999999976  555542     344556777766655

>COG4715 Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.00052  Score=60.25  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=54.4

Q ss_pred             HHHHhhChh-HHHHHHHHhcCCeEEEeeCCCcceEEEEeccCCCCceeEE---c--c--CCCccCccchhhhhccCCCcc
Q 035575           28 ILHFLFGKN-IERATRIVDQRGVRRISGEPSGRSIFKVVGESRRKEEYLC---F--A--ENYCACYSFFYDIVNKGEQLC   99 (132)
Q Consensus        28 ~L~~lf~~~-l~~Al~lld~~~V~~~~~~~s~r~~y~V~g~s~~~~~Y~v---~--~--~~~CsC~~F~~~vl~~~~~~~   99 (132)
                      .|..--+++ +.+.....+.|+|.+++ .+.+...-+|.|+    +.|.+   +  +  ..-||||.   +     ..+.
T Consensus        18 ~lr~~~d~r~~~kG~~y~e~G~V~~i~-~~g~~v~A~V~Gs----~~y~v~vtL~~~~~ss~CTCP~---~-----~~ga   84 (587)
T COG4715          18 DLRRWADARSFQKGEAYLEAGAVLKIT-IRGGTVRAVVEGS----RRYRVRVTLEGGALSSICTCPY---G-----GSGA   84 (587)
T ss_pred             HHHHHhcchHhhhhHHHHhcCCceEEe-ecCCeEEEEEecc----ceeeEEEEeecCCcCceeeCCC---C-----CCcc
Confidence            444455555 67999999999999999 7888889999987    44554   2  1  57899995   2     1468


Q ss_pred             chHHHHHHHHHHh
Q 035575          100 CKHQLAARLASAL  112 (132)
Q Consensus       100 CKHlLA~~la~~l  112 (132)
                      |||+.|+.+.-.-
T Consensus        85 CKH~VAvvl~~~~   97 (587)
T COG4715          85 CKHVVAVVLEYLD   97 (587)
T ss_pred             hHHHHHHHHHHhh
Confidence            9999999886543

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=95.58  E-value=0.0093  Score=32.09  Aligned_cols=24  Identities=33%  Similarity=0.729  Sum_probs=19.6

Q ss_pred             CccCccchhhhhccCCCccchHHHHHHHHH
Q 035575           81 YCACYSFFYDIVNKGEQLCCKHQLAARLAS  110 (132)
Q Consensus        81 ~CsC~~F~~~vl~~~~~~~CKHlLA~~la~  110 (132)
                      .|||.-|...      ..+|.|.+|+....
T Consensus         2 ~CsC~~~~~~------gipC~H~i~v~~~~   25 (28)
T smart00575        2 TCSCRKFQLS------GIPCRHALAAAIHI   25 (28)
T ss_pred             cccCCCcccC------CccHHHHHHHHHHh
Confidence            5999988865      68999999987543

>PRK13717 conjugal transfer protein TrbI; Provisional

Probab=83.03  E-value=5.9  Score=28.84  Aligned_cols=48  Identities=13%  Similarity=0.189  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHhhChhHHHHHHHHh-cCCeEEEe
Q 035575            5 SLVAESVWKSIESTRSVTEDQLSILHFLFGKNIERATRIVD-QRGVRRIS   53 (132)
Q Consensus         5 ~~v~~~~~~~i~~~~~ltd~~l~~L~~lf~~~l~~Al~lld-~~~V~~~~   53 (132)
                      .+..++..+++. ...+||+..++|..-|+..|.++|+-.. ++++..++
T Consensus        53 K~Tld~F~~Q~~-~~~lte~q~e~lt~rF~~aL~~~L~~yq~~H~~VILV  101 (128)
T PRK13717         53 KQTVDAFFDSAS-QKQLSEAQSKALSARFNTALEASLQAWQQKHHAVILV  101 (128)
T ss_pred             HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence            356788888887 6669999999999999999999999888 56777765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00