Citrus Sinensis ID: 035579
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 814 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR4 | 1054 | Putative disease resistan | yes | no | 0.433 | 0.334 | 0.342 | 3e-50 | |
| Q9LRR5 | 1424 | Putative disease resistan | no | no | 0.332 | 0.190 | 0.401 | 1e-43 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.426 | 0.351 | 0.304 | 2e-28 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.396 | 0.329 | 0.291 | 3e-26 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.418 | 0.343 | 0.288 | 4e-26 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.380 | 0.319 | 0.315 | 2e-23 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.266 | 0.166 | 0.282 | 5e-09 | |
| P26337 | 630 | Putative adenylate cyclas | N/A | no | 0.347 | 0.449 | 0.284 | 5e-07 | |
| P23799 | 630 | Putative adenylate cyclas | N/A | no | 0.353 | 0.457 | 0.255 | 1e-06 | |
| P0CB16 | 1201 | Putative disease resistan | no | no | 0.514 | 0.348 | 0.227 | 2e-05 |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 198/377 (52%), Gaps = 24/377 (6%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTL 60
+ NLI L +L+ T L +MP G+L LQTL+ F V GSR+ EL L L G L
Sbjct: 645 ISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKL 703
Query: 61 HISKLENVTDIGDAKEAQLDVKENLRELLLQW----TRSTDGSSSWKAETEMGVLDMLKP 116
I +L+ V D+ DA EA L+ K++LRE+ W + S + ++ + + E V + L+P
Sbjct: 704 KIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRP 763
Query: 117 HKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGM 176
H+++E+ I Y G +FP WL D SFS +V ++ ++C CT+LPS+GQL LK L + GM
Sbjct: 764 HRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGM 823
Query: 177 SRVKSLGSEFYGN------DSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLREL 230
++S+G +FY + PF LETLRF+N+ +W++W+ +R +G + FP L++L
Sbjct: 824 VGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKL 882
Query: 231 HIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQN-SVVCRDT 289
I+ C +L GT P LP SL I C + ++ +N + +
Sbjct: 883 FILRCPELTGTLPTFLP---------SLISLHIYKCGLLDFQPDHHEYSYRNLQTLSIKS 933
Query: 290 SNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLV 349
S + PL L++L++ D Y + NE L+ +LR L I C LQ L
Sbjct: 934 SCDTLVKFPLN-HFANLDKLEV-DQCTSLYSLELSNEHLRGPNALRNLRINDCQNLQLLP 991
Query: 350 AEEEKDQQQQLCELSCR 366
Q Q+ +CR
Sbjct: 992 KLNALPQNLQVTITNCR 1008
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/284 (40%), Positives = 161/284 (56%), Gaps = 13/284 (4%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTL 60
+ LI L L+ T L EMP GI KL LQ LSNFV+G+ SG+ L ELK L++LRGTL
Sbjct: 639 IAELINLRLLDLVGT-PLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTL 697
Query: 61 HISKLENVTDIGDAKEAQLDVKENLRELLLQWTRS----TDGSSSWKAETEMGVLDMLKP 116
IS+L+NV +AK+A L K L L+L+WT GS + A + VL ML+P
Sbjct: 698 RISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEP 757
Query: 117 HKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGM 176
H +L+ F I Y G FP WLGD SF + ++ C +C +LP VGQL SLK+L++
Sbjct: 758 HPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKF 817
Query: 177 SRVKSLGSEFY---GNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHII 233
+ ++ +G +F+ N +PF L+ L+F M W++WI + G+ FP L++L I
Sbjct: 818 NILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQ 875
Query: 234 SCSKLQGTFPEHLPALEMLVIEGSLCKFE-IGGCKKVVWRSATD 276
C L+ FPE LP+ + I S C + G + RS T+
Sbjct: 876 RCPSLRKKFPEGLPSSTEVTI--SDCPLRAVSGGENSFRRSLTN 917
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 178/388 (45%), Gaps = 41/388 (10%)
Query: 18 LEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKEA 77
L P IG LTCL+TL F+VG G +L ELK L L G++ I+ LE V + DA EA
Sbjct: 609 LTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNLN-LCGSISITHLERVKNDTDA-EA 666
Query: 78 QLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWL 137
L K NL+ L + W DG + ++++ E+ VL+ LKPH NL+ I +GG +FP+W+
Sbjct: 667 NLSAKANLQSLSMSW--DNDGPNRYESK-EVKVLEALKPHPNLKYLEIIAFGGFRFPSWI 723
Query: 138 GDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVR-GMSRVK-----SLGSEFYGNDS 191
+++++ K C C LP G+L L++L ++ G + V+ + S F S
Sbjct: 724 NHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLELQNGSAEVEYVEEDDVHSRFSTRRS 783
Query: 192 PIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEM 251
FP L+ LR + + L ++G E FP L E+ I+ C FP
Sbjct: 784 ---FPSLKKLRIWFFRSLKG---LMKEEGEEKFPMLEEMAILYCPLF--VFP-------- 827
Query: 252 LVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKI 311
S+ K E+ G S+ +L + S+ L + L LE L
Sbjct: 828 --TLSSVKKLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSF 885
Query: 312 NDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLI 371
D K + S L + +L+RL I SC L+S +Q E L L
Sbjct: 886 FDFKNLKDLPTS----LTSLNALKRLQIESCDSLESF--------PEQGLEGLTSLTQLF 933
Query: 372 LSCCEGLVKLPQSSLSLCSLREIGIYKC 399
+ C+ L LP+ L +L +G+ C
Sbjct: 934 VKYCKMLKCLPEGLQHLTALTNLGVSGC 961
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 173/422 (40%), Gaps = 99/422 (23%)
Query: 17 SLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKE 76
SL P IG LTCL++LS FV+GK G +L ELK L L G++ I+KL+ V DAKE
Sbjct: 607 SLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNLN-LYGSISITKLDRVKKDTDAKE 665
Query: 77 AQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTW 136
A L K NL L L W DG + +E VL+ LKPH NL+ I G+GG + P W
Sbjct: 666 ANLSAKANLHSLCLSW--DLDGKHRYDSE----VLEALKPHSNLKYLEINGFGGIRLPDW 719
Query: 137 LGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFP 196
+ N+V+++ + C C+ LP G+L P
Sbjct: 720 MNQSVLKNVVSIRIRGCENCSCLPPFGEL------------------------------P 749
Query: 197 CLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFP----EHLPALEML 252
CLE+L +++ G FP LR+L I S L+G + P LE +
Sbjct: 750 CLESLELHTGSADVEYVEDNVHPG--RFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEM 807
Query: 253 VIEGSLC-KFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKI 311
C F I V T + ++ V R SN L L L I
Sbjct: 808 TF--YWCPMFVIPTLSSV----KTLKVIVTDATVLRSISN-----------LRALTSLDI 850
Query: 312 NDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLI 371
+D E T S P +++ + L+YL
Sbjct: 851 SDNVEAT----------------------SLP--------------EEMFKSLANLKYLK 874
Query: 372 LSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP--SKLEKIHIGACDALKSLP 429
+S L +LP S SL +L+ + C +L S PE + + L ++ + C LK LP
Sbjct: 875 ISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLP 934
Query: 430 EA 431
E
Sbjct: 935 EG 936
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 128/444 (28%), Positives = 182/444 (40%), Gaps = 103/444 (23%)
Query: 18 LEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKEA 77
L MP IG LTCL+TL FVVG+ G +L EL+ L LRG + I+ LE V + +AKEA
Sbjct: 617 LTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLN-LRGAISITHLERVKNDMEAKEA 675
Query: 78 QLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWL 137
L K NL L + W R S E+ VL+ LKPH NL+ I + G P W+
Sbjct: 676 NLSAKANLHSLSMSWDRPNRYESE-----EVKVLEALKPHPNLKYLEIIDFCGFCLPDWM 730
Query: 138 GDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPC 197
N+V++ C C+ LP G+L PC
Sbjct: 731 NHSVLKNVVSILISGCENCSCLPPFGEL------------------------------PC 760
Query: 198 LETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQG----TFPEHLPALEMLV 253
LE+L ++ +++ FP LR+LHI L+G E P LE
Sbjct: 761 LESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLE--- 817
Query: 254 IEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKIND 313
+ +I C V+ P L +++L+I
Sbjct: 818 ------EMKISDCPMFVF-----------------------------PTLSSVKKLEI-- 840
Query: 314 MKEQTYMWKSHN----ELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEY 369
W + + ++ +L L I S + SL+ E K+ + L Y
Sbjct: 841 -------WGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLEN--------LIY 885
Query: 370 LILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP--SKLEKIHIGACDALKS 427
L +S E L +LP S SL +L+ + I C +L S PE L S L ++ + C+ LK
Sbjct: 886 LSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKC 945
Query: 428 LPEAWMCDTNSSLEILYIEGCRSL 451
LPE T +L L I GC L
Sbjct: 946 LPEGLQHLT--TLTSLKIRGCPQL 967
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 162/361 (44%), Gaps = 51/361 (14%)
Query: 15 TDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDA 74
+ SL MP IG LTCL+TL FVVG+ G +L EL L L G++ IS LE V + DA
Sbjct: 606 SQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNLN-LYGSIKISHLERVKNDKDA 664
Query: 75 KEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFP 134
KEA L K NL L + W + G +++E E+ VL+ LKPH NL I G+ G P
Sbjct: 665 KEANLSAKGNLHSLSMSW--NNFGPHIYESE-EVKVLEALKPHSNLTSLKIYGFRGIHLP 721
Query: 135 TWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVR-GMSRVKSLGSEFYGNDSPI 193
W+ N+V++ + C+ LP G L L+ L + G + V+ + E D
Sbjct: 722 EWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYV--EEVDIDVHS 779
Query: 194 PFPCLETLRFENMQEWEDW-----IPLRSDQGVEGFPKLRELHIISC------------- 235
FP +RF ++++ + W L +G E FP L E+ I C
Sbjct: 780 GFPT--RIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALT 837
Query: 236 ------SKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDT 289
+K+ +FPE EM +L I C + + L S N++ +
Sbjct: 838 SLRICYNKVATSFPE-----EMFKNLANLKYLTISRCNNL--KELPTSLASLNAL--KSL 888
Query: 290 SNQVFLAGPLKPR-----LPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPK 344
Q+ A P L L EL + E M K E LQ + +L L IR CP+
Sbjct: 889 KIQLCCALESLPEEGLEGLSSLTELFV----EHCNMLKCLPEGLQHLTTLTSLKIRGCPQ 944
Query: 345 L 345
L
Sbjct: 945 L 945
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 31/248 (12%)
Query: 345 LQSLVAEEEKD--QQQQLCEL-----SCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIY 397
+QSL + E D + + L E+ + +LE LIL+ C+ LV LP + +L L + +
Sbjct: 769 IQSLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMK 828
Query: 398 KCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV 457
+C+ L P S LE + + C +L+S P + TN + LY+E A
Sbjct: 829 ECTGLEVLPTDVNLSSLETLDLSGCSSLRSFP---LISTN--IVWLYLENT------AIE 877
Query: 458 QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELP 517
++PS++ NL +K T E +P+ S LE L + GC SL P
Sbjct: 878 EIPSTIGNLHRLVRLEMKKCTGLEVLPTD----VNLSSLETLDLSGCSSL------RSFP 927
Query: 518 ATLESLS--VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQR 575
ES+ + + +E I + L T+L+ + +N C++L LP+ + NL++L ++
Sbjct: 928 LISESIKWLYLENTAIEEIPD-LSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKE 986
Query: 576 CGNLVSFP 583
C L P
Sbjct: 987 CTGLEVLP 994
|
Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 145/327 (44%), Gaps = 44/327 (13%)
Query: 328 LQDIC---SLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQS 384
L+++C +LR L I C L S V + + L +C+ + L+ E LV L +
Sbjct: 294 LEELCKFSNLRELDISGCLVLGSAVVLKNLINLKVLSVSNCK-NFKDLNGLERLVNLDKL 352
Query: 385 SLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444
+LS C + S VA S L+++ I C++L + D N+ LE+LY
Sbjct: 353 NLS----------GCHGVSSLGFVANLSNLKELDISGCESLVCFDG--LQDLNN-LEVLY 399
Query: 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGC 504
+ +S T + A++ S ++ L + GC I +L+ E + LE LS+ GC
Sbjct: 400 LRDVKSFTNVGAIKNLSKMRELDLSGCERITSLSGLETLKG----------LEELSLEGC 449
Query: 505 P---SLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSG 561
S I+S + L L V +C LE ++ L+ T LE + ++ C
Sbjct: 450 GEIMSFDPIWSLHHLRV----LYVSECGNLEDLSG-LEGITGLEELYLHGCRKCTNFGP- 503
Query: 562 LHNLRQLREITIQRCGNLVSFPEGGLPC-AKLSELRIFQCERLEALPKG-LHNLTSLQEL 619
+ NLR + + + C NL GL C L EL + CE E P G + NL +L+ L
Sbjct: 504 IWNLRNVCVVELSCCENLEDLS--GLQCLTGLEELYLIGCE--EITPIGVVGNLRNLKCL 559
Query: 620 TIGGALPSLEEDGLP--TNLHSLDIRG 644
+ E GL NL LD+ G
Sbjct: 560 STCWCANLKELGGLDRLVNLEKLDLSG 586
|
May be involved in the postranscriptional regulation of genes in VSG expression sites. Trypanosoma equiperdum (taxid: 5694) |
| >sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 143/352 (40%), Gaps = 64/352 (18%)
Query: 328 LQDIC---SLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQS 384
L+++C +LR L I C L S V + + L +C+ + L+ E LV L +
Sbjct: 294 LEELCKFSNLRELDISGCLVLGSAVVLKNLINLKVLSVSNCK-NFKDLNGLERLVNLEKL 352
Query: 385 SLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444
+LS C + S VA S L+++ I C++L + D N+ LE+LY
Sbjct: 353 NLS----------GCHGVSSLGFVANLSNLKELDISGCESLVCFDG--LQDLNN-LEVLY 399
Query: 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGC 504
+ +S T + A++ S ++ L + GC I +L+ E + LE LS+ GC
Sbjct: 400 LRDVKSFTNVGAIKNLSKMRELDLSGCERITSLSGLETLKG----------LEELSLEGC 449
Query: 505 PSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHN 564
+ F L L V +C LE + SGL
Sbjct: 450 GEIMS-FDPIWSLYHLRVLYVSECGNLEDL-------------------------SGLQC 483
Query: 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ---CERLEALPKGLHNLTSLQELTI 621
L L E+ + C +F P L + + + CE L+ L GL LT L+EL +
Sbjct: 484 LTGLEEMYLHGCRKCTNFG----PIWNLRNVCVLELSCCENLDDLS-GLQCLTGLEELYL 538
Query: 622 GGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673
G + G+ NL +L W + ++ G R +L L + GC
Sbjct: 539 IGC-EEITTIGVVGNLRNLKCLST--CWCANLKELGGLERLVNLEKLDLSGC 587
|
May be involved in the postranscriptional regulation of genes in VSG expression sites. Trypanosoma brucei brucei (taxid: 5702) |
| >sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 113/497 (22%), Positives = 195/497 (39%), Gaps = 78/497 (15%)
Query: 142 FSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETL 201
L L +DC + + + L L L V G S + ++ +F+ N + + L L
Sbjct: 467 LKKLRVLVIRDCDLIDNIDKLSGLQGLHVLEVSGASSLVNIPDDFFKNMTQLQSLNLSGL 526
Query: 202 RFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQG--TFPEHLPALEMLVIEGSLC 259
++ S +E LR + CS+LQ F LE++ I G+
Sbjct: 527 AIKS-----------SPSTIEKLSMLRCFILRHCSELQDLPNFIVETRKLEVIDIHGAR- 574
Query: 260 KFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTY 319
K E + W+ D+ G + Q+ L L K+ L I +K+ T
Sbjct: 575 KLESYFDRVKDWK---DYKGKNKNFA------QLQLLEHLDFSETKIIRLPIFHLKDSTN 625
Query: 320 MWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLV 379
+ + + L RL +R+C +L+ L Q + L L IL C
Sbjct: 626 DFST-------MPILTRLLLRNCTRLKRL------PQLRPLTNLQ------ILDACGATD 666
Query: 380 KLPQSSLSLCSLREIGIYKCSSLVSFPE----VALPSKLEKIHIGACDALKSLPEAWMCD 435
+ + L +E+ I S S PE +A L K+ + C ++ LP +
Sbjct: 667 LVEMLEVCLEEKKELRILDMSK-TSLPELADTIADVVNLNKLLLRNCSLIEELPS---IE 722
Query: 436 TNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSI 495
+ LE+ + GC LKN I+G + + E + ++ S I
Sbjct: 723 KLTHLEVFDVSGC------------IKLKN--INGSFGEMSYLHEVNLSETNLSELPDKI 768
Query: 496 -----LEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGIN 550
L+ L I C L + + +L LE V C++LE+I +N + L + ++
Sbjct: 769 SELSNLKELIIRKCSKLKTLPNLEKL-TNLEIFDVSGCTELETIEGSFENLSCLHKVNLS 827
Query: 551 FCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ---CERLEALP 607
NL LP+ + L L+E+ ++ C L + P KL+ L IF C L+ +
Sbjct: 828 ET-NLGELPNKISELSNLKELILRNCSKLKALPN----LEKLTHLVIFDVSGCTNLDKIE 882
Query: 608 KGLHNLTSLQELTIGGA 624
+ +++ L E+ + G
Sbjct: 883 ESFESMSYLCEVNLSGT 899
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 814 | ||||||
| 400131587 | 1388 | FB_MR5 [Malus x robusta] | 0.879 | 0.515 | 0.406 | 1e-131 | |
| 284026888 | 1424 | CC-NBS-LRR protein [Quercus suber] | 0.912 | 0.521 | 0.400 | 1e-127 | |
| 45826061 | 739 | resistance protein [Quercus suber] | 0.878 | 0.967 | 0.402 | 1e-121 | |
| 356554923 | 1399 | PREDICTED: putative disease resistance R | 0.859 | 0.500 | 0.380 | 1e-119 | |
| 225449649 | 1418 | PREDICTED: putative disease resistance p | 0.898 | 0.515 | 0.394 | 1e-116 | |
| 224059584 | 1418 | cc-nbs-lrr resistance protein [Populus t | 0.907 | 0.521 | 0.385 | 1e-113 | |
| 359487253 | 1390 | PREDICTED: putative disease resistance p | 0.891 | 0.522 | 0.366 | 1e-111 | |
| 225450023 | 1396 | PREDICTED: putative disease resistance p | 0.861 | 0.502 | 0.369 | 1e-110 | |
| 359495024 | 1390 | PREDICTED: putative disease resistance p | 0.879 | 0.515 | 0.390 | 1e-110 | |
| 451798992 | 1440 | disease resistance protein At3g14460-lik | 0.859 | 0.486 | 0.363 | 1e-110 |
| >gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 329/810 (40%), Positives = 453/810 (55%), Gaps = 94/810 (11%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKD---SGSRLPELKLLTYLR 57
M NL+ L HLNNSN LE+MP +G+L LQ+L+ FVV S + EL+ L +LR
Sbjct: 646 MSNLVNLRHLNNSNVSLLEDMPPQLGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLR 705
Query: 58 GTLHISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPH 117
GTL IS+LENVTD+ DA+ A L+ KE L L+L+W+ S+D ETE VLDML+PH
Sbjct: 706 GTLCISRLENVTDVEDAQRANLNCKERLDSLVLEWSHSSDTR-----ETESAVLDMLQPH 760
Query: 118 KNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMS 177
L++ I Y G +F +W+G FSN+V ++ ++C C +LP +G+L LK L +RGM+
Sbjct: 761 TKLKELTIKSYAGKEFSSWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHLKELYIRGMN 820
Query: 178 RVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSK 237
V+S+G+EFYG S +PFP LETL F +MQ W+ W+P ++D FP L+ L + CSK
Sbjct: 821 AVESVGAEFYGECS-LPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLVRKCSK 879
Query: 238 LQGTFPEHLPALEMLVI------------EGSLCKFEIGGCKKVVWRSATDHLGSQNSVV 285
L+G PE+L +L L I L + I GCK VV +A S+
Sbjct: 880 LEGKLPENLDSLASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFELLESLY 939
Query: 286 CRDTSNQVFL-AGPL-KPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCP 343
+ S L G L + L + +LKIN +E T K+ LLQ + SL RL I
Sbjct: 940 LSNISELTSLQTGELCRNGLNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLEIED-- 997
Query: 344 KLQSLVAEE---EKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCS 400
SL+ EE E D+ QL L C+LE+L L C+ L+KLP+ L SL+E+ I++CS
Sbjct: 998 --NSLLVEELGKEADELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECS 1055
Query: 401 SLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLP 460
SLVSFP+V LP L+ I I C SL Y A Q+P
Sbjct: 1056 SLVSFPDVGLPPSLKDIEITEC--------------------------HSLIYFAKSQIP 1089
Query: 461 SSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATL 520
+L+ +QI C ++++L E + S SSS + + LE+L+I C SLT + ++L L
Sbjct: 1090 QNLRRIQIRDCRSLRSLVDNEAVGSCSSSSH--NCLEYLNIERCQSLTLLSLSDQLVRAL 1147
Query: 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLV 580
L +Y C +LE +A G+ FC N L N R I+RC NL
Sbjct: 1148 RELDIYDCEQLEFLAPD----------GL-FCNNTNYF---LENFR------IRRCQNLK 1187
Query: 581 SFPE--GGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGL----P 634
S P GG+ + L E+RI C+RLEALP+ +HN SL++L I +GL P
Sbjct: 1188 SLPRLSGGIRGSNLREIRITDCDRLEALPEDMHNFNSLEKLIID------YREGLTCSFP 1241
Query: 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLP 694
NL SL I ++ KS+ E G HR +SLR+L I G D DMVSFPP+ R+ T LP
Sbjct: 1242 ANLTSLMI-WKVKSCKSLWELEWGLHRLTSLRYLWIGGEDPDMVSFPPDMVRMETLLP-- 1298
Query: 695 ASLTDLEIGRFPNLERLSSSIVD-LQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753
SLT+L IG FPNL++LSS L +L L L DCPKL P++GLP SL L I CP
Sbjct: 1299 KSLTELSIGGFPNLKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCP 1358
Query: 754 LIEEKCRKDGGQYWDLLTHIPFVRIDDKWV 783
+++E+C+ G+YW ++HIP++ ID K +
Sbjct: 1359 VLKERCQPGKGRYWHKISHIPYIDIDWKMI 1388
|
Source: Malus x robusta Species: Malus x robusta Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 322/804 (40%), Positives = 446/804 (55%), Gaps = 61/804 (7%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGK-DSGSRLPELKLLTYLRGT 59
G L L HLN ++ LE MPL IG L+ LQTLSNFVVGK DS + EL L +LRGT
Sbjct: 646 FGKLFNLRHLNIFGSNLLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGT 705
Query: 60 LHISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKN 119
L ISKLENVT +A+++ L K++L E++++W S++ + S ET++ VL+ML+P+
Sbjct: 706 LCISKLENVTKAQEARDSYLYGKQDLNEVVMEW--SSNLNESQDEETQLEVLNMLQPNVK 763
Query: 120 LEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRV 179
L++ + YGGTKFPTW+GD SFSNLV L+F++C C +LP VGQL LK L ++GM+ V
Sbjct: 764 LKELTVKCYGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGV 823
Query: 180 KSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQ 239
KS+G EFYG PF LETL FE+M W +WIPL + E F L +L II C L
Sbjct: 824 KSVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPLGVN---EAFACLHKLSIIRCHNLV 880
Query: 240 GTFPEHLPALEMLVIEG------------SLCKFEIGGCKKVVWRSATDHLGSQNSVVCR 287
P+HLP+L+ LVI G LC I GCK+V S+ GS S+
Sbjct: 881 RKLPDHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESSVG-FGSPYSMAFS 939
Query: 288 DTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQS 347
S L + K+E LKI D ++ T +W+ E L + LR L+I CP L S
Sbjct: 940 KISEFGNATAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVS 999
Query: 348 LVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK-LPQSSL----SLCSLREIGIYKCSSL 402
A L+ + + C GL LP+ +L + C L + + +C S+
Sbjct: 1000 FPAS----------GFPSMLKVIQIKSCSGLKSLLPEGTLHSRENAC-LERLCVVRCDSM 1048
Query: 403 VSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSS 462
S LP+ L+K+ I C L+ + + ++SS RS T+
Sbjct: 1049 KSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSSSSSGMHDEDINNRSKTH--------- 1099
Query: 463 LKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522
L+ L I C ++ TLT +P++ L HL + CP L C+ S +LPA L+
Sbjct: 1100 LQYLDIKSCPSLTTLTSSGKLPAT---------LTHLLLRECPKLMCLSSTGKLPAALQY 1150
Query: 523 LSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSF 582
L + SKL+ IAERL NTSLE I I C LK LP LHNL +LR+ I C + SF
Sbjct: 1151 LEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSF 1210
Query: 583 PEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSL--EEDGLPTNLHSL 640
P GLP + L L I C+ L+ALP G+ NLTSLQ+L I L SL ++GLPTNL L
Sbjct: 1211 PAAGLP-SNLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQEGLPTNLIEL 1269
Query: 641 DIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDL 700
++ +++ +K M E G + +SL L+I G D+ S+P E + G + LP SL+ L
Sbjct: 1270 NMH-DLKFYKPMFE--WGLQQPTSLIKLSIHGECLDVDSYPGEREN-GVMMLLPNSLSIL 1325
Query: 701 EIGRFPNLERLS-SSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLIEEKC 759
I F NLE LS +L +L +L + +C KL P++GLP SL +L I +CPL+ + C
Sbjct: 1326 CISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHC 1385
Query: 760 RKDGGQYWDLLTHIPFVRIDDKWV 783
+ GQ W + HIP V ID+K++
Sbjct: 1386 NNEKGQEWSKIAHIPCVLIDNKFI 1409
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 315/782 (40%), Positives = 435/782 (55%), Gaps = 67/782 (8%)
Query: 15 TDSLEEMPLGIGKLTCLQTLSNFVVGK-DSGSRLPELKLLTYLRGTLHISKLENVTDIGD 73
++ LE MPL IG LTCLQTLSNFVVGK DS + EL L +LRGTL ISKLENVT +
Sbjct: 1 SNLLEGMPLSIGNLTCLQTLSNFVVGKADSLCVIRELGPLVHLRGTLCISKLENVTKAQE 60
Query: 74 AKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKF 133
A+++ L K++L E++++W S++ + S ET++ VL+ML+P+ L++ + YGGTKF
Sbjct: 61 ARDSYLYGKQDLNEVVMEW--SSNLNESEDEETQLEVLNMLQPNVKLKELTVKCYGGTKF 118
Query: 134 PTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193
PTW+GD SFSNLV L+F++C C +LP VGQL LK L ++GM+ VKS+G EFYG
Sbjct: 119 PTWIGDPSFSNLVLLRFENCDKCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSR 178
Query: 194 PFPCLETLRFENMQEWEDWIPLRSDQGV-EGFPKLRELHIISCSKLQGTFPEHLPALEML 252
PF LETL FENM WE WIPL GV E F LR+L II C L P+HLP+L+ L
Sbjct: 179 PFQSLETLHFENMPRWEKWIPL----GVSEAFACLRKLSIIRCHNLVRKLPDHLPSLKKL 234
Query: 253 VIEGS------------LCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLK 300
VI G LC I G K+V S+ GS S+V S + L
Sbjct: 235 VIHGCWNLVVSVSNLPMLCVLAIEGYKRVECESSVG-FGSPYSMVFSKISEFGHVTAGLM 293
Query: 301 PRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQL 360
+ K+E LKI D ++ T +W+ E L + LR L+I CP L S A
Sbjct: 294 HGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDCPTLVSFPAS--------- 344
Query: 361 CELSCRLEYLILSCCEGLVK-LPQSSL----SLCSLREIGIYKCSSLVSFPEVALPSKLE 415
L+ + + C GL LP+ +L + C +R + + +C S+ S LP+ L+
Sbjct: 345 -GFPSMLKVIQIKSCSGLKSLLPEGTLHSRENACLVR-LCVVRCDSMKSIARGQLPTTLK 402
Query: 416 KIHIGACDALKSLPEAWMCDTNSSLEILYIEGC--RSLTYIAAVQLPSSLKNLQIHGCYN 473
++ I C L+ + +SS +++ E RS T+ L+ L I C +
Sbjct: 403 RLEISHCMNLQCALDEGE--GSSSSSVMHDEDINNRSKTH---------LQYLDIKSCPS 451
Query: 474 IKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLES 533
+ TLT +P++ L HL + CP L C+ S +LPA L+ L + KL+
Sbjct: 452 LTTLTSSGKLPAT---------LTHLLLRECPKLMCLSSTGKLPAALQYLEIQSIPKLQK 502
Query: 534 IAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLS 593
IAERL NT LE I I C LK LP LHNL +LR+ I C + SFP GLP +
Sbjct: 503 IAERLHQNTFLECIKIWNCHGLKSLPEDLHNLSKLRQFQIVWCTSFSSFPAAGLP-SNPR 561
Query: 594 ELRIFQCERLEALPKGLHNLTSLQELTIGGALPSL--EEDGLPTNLHSLDIRGNMEIWKS 651
L I C+ L+ALP G+ NLTSLQ+L I L SL ++GLPTNL L++ +++ +K
Sbjct: 562 VLGIKNCKNLKALPNGMRNLTSLQKLDISNRLDSLPSPQEGLPTNLIELNMI-DLKFYKP 620
Query: 652 MIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL 711
M E G + +SL L+I G D+ SFP E + G + LP SL+ L I F NLE L
Sbjct: 621 MFE--WGLQQLTSLIKLSIHGECLDVDSFPGEREN-GAMMLLPNSLSILCISYFQNLECL 677
Query: 712 S-SSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLIEEKCRKDGGQYWDLL 770
S +L +L +L + +C KL P++GLP SL +L I +CPL+ + C + GQ W +
Sbjct: 678 SPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKI 737
Query: 771 TH 772
H
Sbjct: 738 AH 739
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 315/827 (38%), Positives = 428/827 (51%), Gaps = 127/827 (15%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTL 60
M +LI L HL+ + + SL MP GIGKLT LQTLSNFVVG S + EL L+ +RG L
Sbjct: 651 MSDLINLRHLDITRSHSLTRMPHGIGKLTHLQTLSNFVVG---SSGIGELMKLSNIRGVL 707
Query: 61 HISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNL 120
+S+LE+VTD +A EA ++ K + L L+WT + S E VL ML+PHKNL
Sbjct: 708 SVSRLEHVTDTREASEAMINKKVGIDVLKLKWTSCMNNQS--HTERAKEVLQMLQPHKNL 765
Query: 121 EQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVK 180
+ I YGGT FP W+GD S+ +LV LK KDC CT+LP++G L +LK L + GM V
Sbjct: 766 AKLTIKCYGGTSFPKWIGDPSYKSLVFLKLKDCAHCTSLPALGNLHALKELYIIGMKEVC 825
Query: 181 SLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQG 240
+ EF GN PFP LE L F +M++WE+W +++ + F L++L I+ C KL G
Sbjct: 826 CIDGEFCGNACLRPFPSLERLYFMDMEKWENWFLSDNNEQNDMFSSLQQLFIVKCPKLLG 885
Query: 241 TFPEHLPALEMLVIEG------------SLCKFEIGGCKKVVWRSATDHLGSQNSVVCRD 288
PE+LP+L+ ++++ L K EI GCK +V A + S NS+
Sbjct: 886 KLPENLPSLKHVIVKECEQLLVTISSLPVLYKLEIEGCKGLVLNCANE-FNSLNSMSVSR 944
Query: 289 TSNQVFLAGPLKPRLPKLEELKI----------NDMKEQTYMWKSHNELLQDICSLRRLT 338
FL L +EELKI ND+ + + L I LR +
Sbjct: 945 ILEFTFLMERLVQAFKTVEELKIVSCALDETVLNDLWVNEVWLEKNPHGLSSI--LRLIE 1002
Query: 339 IRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYK 398
IR+C ++S+ V + S L + I
Sbjct: 1003 IRNCNIMKSIPK----------------------------VLMVNSHF----LERLYICH 1030
Query: 399 CSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTN----------------SSLEI 442
C S+V LP L+ + I C L+ L + C ++ S LE
Sbjct: 1031 CDSIVFVTMDQLPHSLKSLEISNCKNLRCLLDNGTCTSSSIIMHDDNVQHGSTIISHLEY 1090
Query: 443 LYIEGCRSLTYIA-AVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSI 501
+YI C SLT I+ + +LP S+K+L I
Sbjct: 1091 VYIGWCPSLTCISRSGELPESVKHLFIW-------------------------------- 1118
Query: 502 VGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSG 561
C L+C+ K +LP ++E L + C KLESIA RL NTSLE+I I CENLK LP G
Sbjct: 1119 -NCSELSCLSMKGQLPKSIERLEIQSCPKLESIANRLHRNTSLESIQIWNCENLKSLPEG 1177
Query: 562 LHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTI 621
LH L L+EI I C NLVSFPE GLP + LSEL I CE+L ALP ++NL SL+EL I
Sbjct: 1178 LHFLVNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEI 1237
Query: 622 GGALPSLE---EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMV 678
G PS++ E P NL SL I + ++M G ++ S LR LTI G +
Sbjct: 1238 GYC-PSIQYFPEINFPDNLTSLWI-NDHNACEAMF--NWGLYKLSFLRDLTIIGGN---- 1289
Query: 679 SFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPE 737
F P +K LGT LP++LT L + FP+LE LSS L +L++L + +CPKL PE
Sbjct: 1290 LFMPLEK-LGTM--LPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPE 1346
Query: 738 KGLPSSLLRLSILSCPLIEEKCRKDGGQYWDLLTHIPFVRIDDKWVF 784
KGLPSSLL L I CP ++E+CRKD G+ W + +P+V ID K+++
Sbjct: 1347 KGLPSSLLELYIQDCPFLKEQCRKDKGRDWLKIADVPYVEIDGKFIY 1393
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 318/807 (39%), Positives = 436/807 (54%), Gaps = 76/807 (9%)
Query: 3 NLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHI 62
NLI L HL+ ++T LE MP +GKL LQTLS F+VGK + EL L +LRG L I
Sbjct: 658 NLINLRHLDIAHTHQLEVMPPQMGKLKSLQTLSKFIVGKSKELGIKELGDLLHLRGKLSI 717
Query: 63 SKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQ 122
L+NV DI DA++A L K +L ELL++W+ S S E+ VL L+P+ NL++
Sbjct: 718 LDLQNVVDIQDARDANLKDKHHLEELLMEWS-SNMFDDSQNETIELNVLHFLQPNTNLKK 776
Query: 123 FGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSL 182
I YGG FP W+GD SFS +V L+ C CT LPS+G+LSSLK L V+GM VKS+
Sbjct: 777 LTIQSYGGLTFPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSV 836
Query: 183 GSEFYGNDS--PIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQG 240
G EFYG S PFP LE LRFE+M EWE+W E +P+LREL I C KL
Sbjct: 837 GIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWC------SSESYPRLRELEIHHCPKLIQ 890
Query: 241 TFPEHLPALEMLVIEGS------------LCKFEIGGCKKVVWRSATDHLGSQNSVVCRD 288
P HLP+L L I L + C + + RS D L S ++ +
Sbjct: 891 KLPSHLPSLVKLDIIDCPKLVAPLPSLPFLRDLIVAECNEAMLRSGGD-LTSLITLRLEN 949
Query: 289 TSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSL 348
SN FL L L LE L+I + E ++ +S +++ +R L I CPKL L
Sbjct: 950 ISNLTFLNEGLVRFLGALEVLEICNCSELKFLLQS-GVGFENLSCIRHLVIVMCPKL-VL 1007
Query: 349 VAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEV 408
+AE++ L C LEYL ++ C L KLP SL SLRE+ I KC L S E+
Sbjct: 1008 LAEDQP--------LPCNLEYLEINKCASLEKLPIGLQSLTSLRELSIQKCPKLCSLAEM 1059
Query: 409 ALPSKLEKIHIGACDALKSLPEAWMCDTNSS----LEILYIEGCRSLTYIAAVQLPSSLK 464
P L + + C+ L+SLP+ M + + LE L I C SL +LPS LK
Sbjct: 1060 DFPPMLISLELYDCEGLESLPDGMMINGENRNFCLLECLKIVHCPSLICFPRGELPSKLK 1119
Query: 465 NLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524
L+I C +++L EG+ + + LE L I CP L+ F + LP+T++ L
Sbjct: 1120 ELEIIDCAKLQSLP--EGLILGDHTCH----LEFLRIHRCPLLSS-FPRGLLPSTMKRLE 1172
Query: 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFP 583
+ C +LESI+ L ++T+LE + I + LKI SG LH+L+ L E+ I C L SFP
Sbjct: 1173 IRNCKQLESIS-LLSHSTTLEYLRI---DRLKINFSGCLHSLKHLIELHIYSCSGLESFP 1228
Query: 584 EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGA--LPSLEEDGLPTNLHSLD 641
E G L L I C+ L++LP + + TSL++L I L S E+GL NL S
Sbjct: 1229 ERGFSSPNLKMLHIDDCKNLKSLPLQMQSFTSLRDLRIYDCPNLVSFAEEGLSLNLTSFW 1288
Query: 642 IRGNMEIWKSMIERGRGFHRFSSLRHLTIDG----CDDDMVSFPPEDKRLGTALP-LPAS 696
IR + + + G H +SL+ I+ CD D +LP LP +
Sbjct: 1289 IRNCKNLKMPLYQ--WGLHGLTSLQTFVINNVAPFCDHD-------------SLPLLPRT 1333
Query: 697 LTDLEIGRFPNLERLSSSIVDLQNLTELCLRD---CPKLKYF-PEKGLPSSLLRLSILSC 752
LT L I +F NLE LSS + LQNLT L + + CPKL+ F P++GL ++L L I C
Sbjct: 1334 LTYLSISKFHNLESLSS--MGLQNLTSLEILEIYSCPKLQTFLPKEGLSATLSNLRIKFC 1391
Query: 753 PLIEEKCRKDGGQYWDLLTHIPFVRID 779
P+IE +CRK+ G+ W +++HIP + +D
Sbjct: 1392 PIIEARCRKNKGEDWPMISHIPRIDMD 1418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 309/801 (38%), Positives = 416/801 (51%), Gaps = 62/801 (7%)
Query: 2 GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLH 61
GNLI L HL+ ++TD+L EMP +G LT LQ LS F VGK G + EL+ L L G L
Sbjct: 654 GNLIDLCHLDITDTDNLFEMPSWMGNLTGLQKLSKFTVGKKEGCGIEELRGLQNLEGRLS 713
Query: 62 ISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLE 121
I L NV D A A L K NL EL L+W++S + +M VLD L+PH NL+
Sbjct: 714 IMALHNVIDARHAVHANLRGKHNLDELELEWSKSDIKDED--RQHQMLVLDSLQPHTNLK 771
Query: 122 QFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKS 181
+ I YGGT+FP+W+G SFS +V LK C CT LP +G+L L+ L ++G+ V++
Sbjct: 772 ELKISFYGGTEFPSWVGHPSFSKIVHLKLSCCRKCTVLPPLGRLPLLRDLCIQGLDAVET 831
Query: 182 LGSEFYGNDSPI-PFPCLETLRFENMQEWEDWIPLRSD-QGVEGFPKLRELHIISCSKLQ 239
+G EFYG+ S + PFP L+TL FE+MQEW+ W + D + E FP L EL + +C KL
Sbjct: 832 VGHEFYGDCSSVKPFPSLKTLTFEDMQEWKSWSAVGVDGEAEEQFPSLSELTLWNCPKLL 891
Query: 240 GTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSAT-DHLGSQNSVVCRDTSNQVFLAGP 298
G FP LP S K I C +V LG C + +
Sbjct: 892 GRFPSCLP---------SCVKITIAKCPMLVDSDEKLPVLGELKLEECDEVKPKCMFHNS 942
Query: 299 LKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSL------VAEE 352
L LK+ M TY+ +LLQ + +L+ L I PKL SL +
Sbjct: 943 ------SLITLKLGSMSRLTYL---KGQLLQSLGALKVLMISDFPKLTSLWQKGTGLENF 993
Query: 353 EKDQQQQLCELSCRLEYLI--LSCCEGLVKLPQSSLS-LCSLREIGIYKCSSLVSFPEVA 409
E Q L E+ + LS C+ L LP ++ L SL ++ I C +LVS PE
Sbjct: 994 EHPQFVSLTEIGMPSTHKSSKLSGCDKLDLLPIHTVHMLLSLEDLCIESCPNLVSIPEAG 1053
Query: 410 LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIH 469
L S L + + C AL+SLP+ +N LE L IE C SL LP++LK L+I
Sbjct: 1054 LLSSLRHLVLRDCKALRSLPDGM---SNCPLEDLEIEECPSLECFPGRMLPATLKGLKIR 1110
Query: 470 GCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCS 529
C +K+L E + + + T EHL I+GCPSL F +LP L++L ++ CS
Sbjct: 1111 YCTELKSLP--EDLMHNKNGPGTLCHFEHLEIIGCPSLKS-FPDGKLPTRLKTLKIWDCS 1167
Query: 530 KLESIAER-LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLP 588
+L+ ++E L ++ SLE + I+ CE L P L + + L E+ + C L FP G P
Sbjct: 1168 QLKPLSEMMLHDDMSLEYLAISDCEALSSFPECLSSFKHLSELNLSNCSALKLFPGVGFP 1227
Query: 589 CAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG--ALPSLEEDGLPTNLHSLDI---- 642
A L L I+ C+ L++LP + LTSLQELTI AL S +P +L SL+I
Sbjct: 1228 PANLRTLTIYNCKNLKSLPNEMRKLTSLQELTICSCPALKSFPNGDMPPHLTSLEIWDCD 1287
Query: 643 --RGNMEIWKSMIERGRGFHRFSSLRHLTI-DGCDDDMVSFPPEDKRLGTALPLPASLTD 699
G + W + LR +I GC VSFP E LP +LT
Sbjct: 1288 NLDGCLSEW--------NLQSLTCLRDFSIAGGCFSHTVSFPDE------KCLLPTNLTS 1333
Query: 700 LEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLIEEKC 759
+ IGR PNLE LS + L L EL + DCPKLK P LP +L R SI CPL+ ++C
Sbjct: 1334 VWIGRLPNLESLSMQLQSLAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQRC 1393
Query: 760 RKDGGQYWDLLTHIPFVRIDD 780
K G YW L++HIP V IDD
Sbjct: 1394 SKLKGVYWPLISHIPCVEIDD 1414
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487253|ref|XP_003633548.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 305/833 (36%), Positives = 430/833 (51%), Gaps = 107/833 (12%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTL 60
+ N+ L HLN T L+ MP+ +GKLT LQTLSNFVVGK GS + +LK L+ LRG L
Sbjct: 605 LKNVTNLRHLN-IETSGLQLMPVDMGKLTSLQTLSNFVVGKGRGSGIGQLKSLSNLRGKL 663
Query: 61 HISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNL 120
IS L+NV ++ DA EA+L+ KE L +L+L+W DG+ K E E +LDML+PH+NL
Sbjct: 664 SISGLQNVVNVRDAIEAKLEDKEYLEKLVLEWIGIFDGTRDEKVENE--ILDMLQPHENL 721
Query: 121 EQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVK 180
+ I YGGT+FP+W+GD SFS + L K C C +LPS+GQL LK L + GM +K
Sbjct: 722 KNLSIEYYGGTEFPSWVGDPSFSKMEYLNLKGCKKCISLPSLGQLPLLKELIIEGMDGIK 781
Query: 181 SLGSEFYGND--SPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKL 238
+G +FYG+D S PF LETL+FEN++EWE+W D GVEGFP LREL I C KL
Sbjct: 782 HVGPQFYGDDYSSIDPFQSLETLKFENIEEWEEWSSF-GDGGVEGFPCLRELSIFKCPKL 840
Query: 239 QGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLA-- 296
F +LE L IE C+++ +A L S ++ D L
Sbjct: 841 T-RFSHRFSSLEKLCIE---------RCQEL---AAFSRLPSPENLESEDFPRLRVLRLV 887
Query: 297 -----GPLKPRLPKLEELKINDMKEQTYMWK-----------SHNELLQDICSLRRLTIR 340
L LP LE + I+D ++ + K S+ E+L + LR LT
Sbjct: 888 RCPKLSKLPNYLPSLEGVWIDDCEKLAVLPKLVKLLNLDLLGSNVEILGTMVDLRSLTFL 947
Query: 341 SCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLS---LCSLREIGIY 397
++ +L E QQ S +LE L + C LV L L L SLR + I
Sbjct: 948 QINQISTLKIFPEGFMQQ-----SAKLEELKIVNCGDLVALSNQQLGLAHLASLRRLTIS 1002
Query: 398 KCSSLVSFPEVA--LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIA 455
C LV+ P+ +P +LE + I C L+ LP+ SL L +EGC+ L
Sbjct: 1003 GCPKLVALPDEVNKMPPRLESLDIKDCHNLEKLPDELF--KLESLSELRVEGCQKLESFP 1060
Query: 456 AVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNE 515
+ LPS LK L I C +K +++G S++S LE L I C SL + +
Sbjct: 1061 DMGLPSKLKRLVIQNCGAMK--AIQDGNLRSNTS------LEFLEIRSCSSLVSVL-EGG 1111
Query: 516 LPATLESLSVYKCSKLESI-AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQ 574
+P TL+ + + C L+S+ E ++N+ SLE + I C +L P G + L+ + I
Sbjct: 1112 IPTTLKYMRISYCKSLKSLPVEMMNNDMSLEYLEIEACASLLSFPVG-ELPKSLKRLEIS 1170
Query: 575 RCGN------------------------LVSFPEGGLPCAKLSELRIFQCERLEALPKGL 610
CGN L FP GLP L +L I C++L+ LP
Sbjct: 1171 ICGNFLSLPSSLLNLVHLDFLHLENCPLLEYFPNTGLPTPNLRKLTIATCKKLKFLPNRF 1230
Query: 611 HNLTSLQELTIGG--ALPSLEEDGLPTNLHSLDIR-----GNMEIWKSMIERGRGFHRFS 663
HNL SLQ+L + +L SL + GLPTNL SL+I ++ WK H+ +
Sbjct: 1231 HNLKSLQKLALSRCPSLVSLPKQGLPTNLISLEITRCEKLNPIDEWK--------LHKLT 1282
Query: 664 SLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTE 723
+LR +G +VSF LP S+T L I P+L +S + +L +L
Sbjct: 1283 TLRTFLFEGI-PGLVSF-------SNTYLLPDSITFLHIQELPDLLSISEGLQNLTSLET 1334
Query: 724 LCLRDCPKLKYFPEKGLPSSLLRLSILSCPLIEEKCRKDGGQYWDLLTHIPFV 776
L +RDC KL+ P++GLP++L L+I +CPLI+ +C++D G+ W + IP V
Sbjct: 1335 LKIRDCHKLQALPKEGLPATLSSLTIKNCPLIQSRCKQDTGEDWSKIMDIPNV 1387
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450023|ref|XP_002272823.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi|451798994|gb|AGF69195.1| disease resistance protein At3g14460-like protein 2 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 302/818 (36%), Positives = 420/818 (51%), Gaps = 117/818 (14%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTL 60
+GNL L HL+ +NT+ LEEMP I KL LQ LSNF+VGKD+G + EL+ + L+G L
Sbjct: 660 IGNLNNLRHLDVTNTN-LEEMPPRICKLKGLQVLSNFIVGKDNGLNVKELRNMPQLQGGL 718
Query: 61 HISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNL 120
ISKLENV ++ DA++A L+ K+ L EL ++W+ + S + A + VLD L+PH NL
Sbjct: 719 CISKLENVANVQDARDASLNKKQKLEELTIEWSAGLNDSHN--ARNQKDVLDSLQPHFNL 776
Query: 121 EQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVK 180
+ I YGG +FP W+GD SFS +V + +C CT+LP +G L LKH+ + G+ VK
Sbjct: 777 NKLKIEYYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVK 836
Query: 181 SLGSEFYGND--SPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKL 238
+G EFYG PFP LE+L F M +WEDW S E +P L L II+C KL
Sbjct: 837 IVGREFYGETCLPNKPFPSLESLSFSAMSQWEDW---ESPSLSEPYPCLLHLEIINCPKL 893
Query: 239 QGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGP 298
P +LP SL F IG C ++V S + L S + + +D + V +G
Sbjct: 894 IKKLPTNLP---------SLVHFSIGTCPQLV--SPLERLPSLSKLRVQDCNEAVLRSGL 942
Query: 299 LKPRLPKLEELKINDMKEQTYMWKSHNELLQ-------DICS------------LRRLTI 339
LP L EL I+ M T + + +LL D C +++L
Sbjct: 943 ---ELPSLTELGIDRMVGLTRLHEGCMQLLSGLQVLDIDRCDKLTCLWENGFDGIQQLQT 999
Query: 340 RSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKC 399
SCP+L SL E+EK EL +L+ L + C L KLP L L E+ IY C
Sbjct: 1000 SSCPELVSL-GEKEKH------ELPSKLQSLKIRWCNNLEKLPNGLYRLTCLGELEIYDC 1052
Query: 400 SSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSS--------LEILYIEGCRSL 451
LVSFPE+ P L ++ I +C+ L+ LP+ M + S LE L+I C SL
Sbjct: 1053 PKLVSFPELGFPPMLRRLVIHSCEGLRCLPDWMMVMKDGSNNGSDVCLLEYLHIHTCPSL 1112
Query: 452 TYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIF 511
+LP++LK L+I C +++L S+++ TS L L I CPSLT F
Sbjct: 1113 IGFPEGELPTTLKELKIWRCEKLESLPGGMMHHDSNTTTATSGGLHVLDIWKCPSLT-FF 1171
Query: 512 SKNELPATLESLSVYKCSKLESIAERL--DNNTSLETIGINFCENLKILPSGLHNLRQLR 569
+ P+TL+ L ++ C++LESI++ NN+SLE + I LKI+P L+ LR
Sbjct: 1172 PTGKFPSTLKKLEIWDCAQLESISKETFHSNNSSLEYLSIRSYPCLKIVPDCLYKLR--- 1228
Query: 570 EITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLE 629
EL I CE +E LP L NLT+L L I
Sbjct: 1229 ------------------------ELEINNCENVELLPHQLQNLTALTSLGI-------- 1256
Query: 630 EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGT 689
+I+ + W G +SL+ LTI G + SF G
Sbjct: 1257 -------YRCENIKMPLSRW--------GLATLTSLKELTIGGIFPRVASFSD-----GQ 1296
Query: 690 ALP-LPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYF-PEKGLPSSLLR 746
P LP +LT L I F NL+ LSS ++ L +L +L ++ CPKL+ F P +GLP +L R
Sbjct: 1297 RPPILPTTLTFLSIQDFQNLKSLSSLALQTLTSLEDLWIQRCPKLQSFCPREGLPDTLSR 1356
Query: 747 LSILSCPLIEEKCRKDGGQYWDLLTHIPFVRIDDKWVF 784
L I CPL++++C K GQ W + HIP+V IDDK VF
Sbjct: 1357 LYITDCPLLKQRCSKGKGQDWPNIAHIPYVEIDDKNVF 1394
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 301/770 (39%), Positives = 417/770 (54%), Gaps = 54/770 (7%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTL 60
MGNLI L HL+ + T LEEMP +G LT LQTLS F+VGK +GS + ELK L L+G L
Sbjct: 657 MGNLINLRHLDIAGTSQLEEMPPRMGSLTNLQTLSKFIVGKGNGSSIQELKHLLDLQGEL 716
Query: 61 HISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNL 120
I L NV + DA +A L K ++ EL + W S D S EM VL++L+P +NL
Sbjct: 717 SIQGLHNVRNTRDAMDACLKNKCHIEELTMGW--SGDFDDSRNELNEMLVLELLQPQRNL 774
Query: 121 EQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVK 180
++ + YGG KFP+W+G+ SFS + +L K+CG CT+LP +G+LS LK L ++GM +VK
Sbjct: 775 KKLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALRIQGMCKVK 834
Query: 181 SLGSEFYGNDSPI-PFPCLETLRFENMQEWEDWIPLRSDQGVEG-FPKLRELHIISCSKL 238
++G EF+G S PFPCLE+LRFE+M EWEDW + EG F LREL I C KL
Sbjct: 835 TIGDEFFGEVSLFQPFPCLESLRFEDMPEWEDWCFSDMVEECEGLFSCLRELRIRECPKL 894
Query: 239 QGTFPEHLPAL-EMLVIE-----------GSLCKFEIGGCKKVVWRSATDHLGSQNSVVC 286
G+ P LP+L E+ + E +C + C +VV R+ D L S ++
Sbjct: 895 TGSLPNCLPSLAELEIFECPKLKAALPRLAYVCSLNVVECNEVVLRNGVD-LSSLTTLNI 953
Query: 287 RDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQ 346
+ S L L L++L I E T +W++ L+ + L + I C L
Sbjct: 954 QRISRLTCLREGFTQLLAALQKLVIRGCGEMTSLWENRFG-LECLRGLESIDIWQCHGLV 1012
Query: 347 SLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP 406
SL EE++ L C L++L + C L +LP L L E+ + C L SFP
Sbjct: 1013 SL--EEQR--------LPCNLKHLKIENCANLQRLPNGLQRLTCLEELSLQSCPKLESFP 1062
Query: 407 EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNL 466
E+ LP L + + C+ LK LP + + LE L IE C L +LP+SLK L
Sbjct: 1063 EMGLPPMLRSLVLQKCNTLKLLPHNY---NSGFLEYLEIEHCPCLISFPEGELPASLKQL 1119
Query: 467 QIHGCYNIKTLTVEEGIPSSSSSRYTSS-ILEHLSIVGCPSLTCIFSKNELPATLESLSV 525
+I C N++TL EG+ +S +S LE L I C SL + ELP+TL+ L +
Sbjct: 1120 KIKDCANLQTLP--EGMTHHNSMVSNNSCCLEVLEIRKCSSLPSL-PTGELPSTLKRLEI 1176
Query: 526 YKCSKLESIAER-LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE 584
+ C + + I+E+ L +NT+LE + I+ N+KILP LH+L L I C LVSFPE
Sbjct: 1177 WDCRQFQPISEKMLHSNTALEHLSISNYPNMKILPGFLHSLTYL---YIYGCQGLVSFPE 1233
Query: 585 GGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG--ALPSLEEDGLPTNLHSLDI 642
GLP L +L I CE L++LP + NL SLQEL I L S E GL NL SL I
Sbjct: 1234 RGLPTPNLRDLYINNCENLKSLPHQMQNLLSLQELNIRNCQGLESFPECGLAPNLTSLSI 1293
Query: 643 RGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEI 702
R + + + E G HR +SL L I G + S +D+ L LP +L+ L I
Sbjct: 1294 RDCVNLKVPLSE--WGLHRLTSLSSLYISGVCPSLASL-SDDECL-----LPTTLSKLFI 1345
Query: 703 GRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSC 752
+ +L L ++ +L +L + + CPKL+ GLP +L RL I C
Sbjct: 1346 SKLDSLVCL--ALKNLSSLERISIYRCPKLRSI---GLPETLSRLEIRDC 1390
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|451798992|gb|AGF69194.1| disease resistance protein At3g14460-like protein 1 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 298/819 (36%), Positives = 419/819 (51%), Gaps = 119/819 (14%)
Query: 3 NLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHI 62
NL L HL+ ++T+ LEEMPL I KL LQ LS F+VGKD+G + EL+ + +L+G L I
Sbjct: 663 NLNNLRHLDVTDTN-LEEMPLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQGELCI 721
Query: 63 SKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQ 122
S LENV ++ DA++A L+ K+ L EL ++W+ D S + A ++ VL L+PH NL +
Sbjct: 722 SNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHN--ARNQIDVLGSLQPHFNLNK 779
Query: 123 FGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSL 182
I YGG +FP W+GD SFS +V + +C CT+LP +G L LKH+ + G+ VK +
Sbjct: 780 LKIENYGGPEFPPWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKEVKIV 839
Query: 183 GSEFYGND--SPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQG 240
G EFYG PFP LE+L F +M +WEDW S E +P L L I+ C KL
Sbjct: 840 GREFYGETCLPNKPFPSLESLSFSDMSQWEDW---ESPTLSEPYPCLLHLKIVDCPKLIK 896
Query: 241 TFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLK 300
P +LP SL I GC + W + L S + + +D + V +G
Sbjct: 897 KLPTNLP---------SLVHLSILGCPQ--WVPPLERLSSLSKLRVKDCNEAVLRSGL-- 943
Query: 301 PRLPKLEELKINDMKEQTYMWKSHNELLQ-----DICS--------------LRRLTIRS 341
LP L EL+I + T + + +LL DIC +++L S
Sbjct: 944 -ELPSLTELRIERIVGLTRLHEGCMQLLSGLQVLDICGCDELTCLWENGFDGIQQLQTSS 1002
Query: 342 CPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSS 401
CP+L SL E+EK E+ +L+ L +S C L KLP L L E+ IY C
Sbjct: 1003 CPELVSL-GEKEKH------EMPSKLQSLTISGCNNLEKLPNGLHRLTCLGELEIYGCPK 1055
Query: 402 LVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSS--------LEILYIEGCRSLTY 453
LVSFPE+ P L ++ I C+ L+ LP+ M + S LE L I+ C SL
Sbjct: 1056 LVSFPELGFPPMLRRLVIVGCEGLRCLPDWMMVMKDGSNNGSDVCLLEYLKIDTCPSLIG 1115
Query: 454 IAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSK 513
+LP++LK L+I C +++L S+++ TS L L I CPSLT F
Sbjct: 1116 FPEGELPTTLKQLRIWECEKLESLPGGMMHHDSNTTTATSGGLHVLDIWDCPSLT-FFPT 1174
Query: 514 NELPATLESLSVYKCSKLESIAERL--DNNTSLETIGINFCENLKILPSGLHNLRQLREI 571
+ P+TL+ L ++ C++LESI+E + NN+SLE + I+ LKI+P L+ LR
Sbjct: 1175 GKFPSTLQKLEIWDCAQLESISEEMFHSNNSSLEYLSISSYPCLKIVPDCLYKLR----- 1229
Query: 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEED 631
EL+I +CE +E P L NLT+L LTI
Sbjct: 1230 ----------------------ELKINKCENVELQPYHLQNLTALTSLTISDCE------ 1261
Query: 632 GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTAL 691
+I+ + W G +SL+ LTI G FPP
Sbjct: 1262 ---------NIKTPLSRW--------GLATLTSLKKLTIGGI------FPPVASFSDGQR 1298
Query: 692 P--LPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYF-PEKGLPSSLLRL 747
P LP +LT L I F NL+ LSS ++ L +L EL +R CPKL+ F P +GLP +L RL
Sbjct: 1299 PPILPTTLTLLSINDFQNLKSLSSLALQTLTSLEELWIRCCPKLESFCPREGLPDTLSRL 1358
Query: 748 SILSCPLIEEKCRKDGGQYWDLLTHIPFVRIDDKWVFGE 786
I CPL++++C K GQ W + HIP+V+ DDK V E
Sbjct: 1359 YIKDCPLLKQRCSKRKGQDWPNIAHIPYVQTDDKNVLKE 1397
|
Source: Vitis labrusca Species: Vitis labrusca Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 814 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.332 | 0.190 | 0.401 | 4.2e-60 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.433 | 0.334 | 0.347 | 2.3e-45 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.547 | 0.247 | 0.264 | 2.2e-20 | |
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.412 | 0.169 | 0.260 | 1.2e-18 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.298 | 0.204 | 0.287 | 9.7e-17 | |
| TAIR|locus:2098110 | 1219 | AT3G44670 [Arabidopsis thalian | 0.324 | 0.216 | 0.279 | 1.4e-14 | |
| TAIR|locus:2147992 | 1189 | AT5G11250 [Arabidopsis thalian | 0.374 | 0.256 | 0.275 | 5.9e-14 | |
| TAIR|locus:2053405 | 1215 | AT2G14080 [Arabidopsis thalian | 0.278 | 0.186 | 0.306 | 3.4e-13 | |
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.434 | 0.273 | 0.257 | 1.6e-12 | |
| TAIR|locus:2076043 | 1194 | RPP1 "recognition of peronospo | 0.323 | 0.220 | 0.257 | 6.1e-11 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 457 (165.9 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 114/284 (40%), Positives = 161/284 (56%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTL 60
+ LI L L+ T L EMP GI KL LQ LSNFV+G+ SG+ L ELK L++LRGTL
Sbjct: 639 IAELINLRLLDLVGTP-LVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTL 697
Query: 61 HISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDG--SSSWKAET--EMGVLDMLKP 116
IS+L+NV +AK+A L K L L+L+WT G S+ A + VL ML+P
Sbjct: 698 RISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEP 757
Query: 117 HKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGM 176
H +L+ F I Y G FP WLGD SF + ++ C +C +LP VGQL SLK+L++
Sbjct: 758 HPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKF 817
Query: 177 SRVKSLGSEFY---GNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHII 233
+ ++ +G +F+ N +PF L+ L+F M W++WI + G+ FP L++L I
Sbjct: 818 NILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQ 875
Query: 234 SCSKLQGTFPEHLPALEMLVIEGSLCKFE-IGGCKKVVWRSATD 276
C L+ FPE LP+ + I S C + G + RS T+
Sbjct: 876 RCPSLRKKFPEGLPSSTEVTI--SDCPLRAVSGGENSFRRSLTN 917
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.3e-45, P = 2.3e-45
Identities = 131/377 (34%), Positives = 200/377 (53%)
Query: 1 MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTL 60
+ NLI L +L+ T L +MP G+L LQTL+ F V GSR+ EL L L G L
Sbjct: 645 ISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKL 703
Query: 61 HISKLENVTDIGDAKEAQLDVKENLRELLLQW----TRSTDGSSSWKAETEMGVLDMLKP 116
I +L+ V D+ DA EA L+ K++LRE+ W + S + ++ + + E V + L+P
Sbjct: 704 KIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRP 763
Query: 117 HKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGM 176
H+++E+ I Y G +FP WL D SFS +V ++ ++C CT+LPS+GQL LK L + GM
Sbjct: 764 HRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGM 823
Query: 177 SRVKSLGSEFYGNDSPI------PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLREL 230
++S+G +FY +D + PF LETLRF+N+ +W++W+ +R +G + FP L++L
Sbjct: 824 VGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKL 882
Query: 231 HIISCSKLQGTFPEHLPALEML-VIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDT 289
I+ C +L GT P LP+L L + + L F+ + +R+ L ++S C DT
Sbjct: 883 FILRCPELTGTLPTFLPSLISLHIYKCGLLDFQPDH-HEYSYRNLQT-LSIKSS--C-DT 937
Query: 290 SNQVFLAGXXXXXXXXXXXXXINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLV 349
L + D Y + NE L+ +LR L I C LQ L
Sbjct: 938 -----LVKFPLNHFANLDKLEV-DQCTSLYSLELSNEHLRGPNALRNLRINDCQNLQLLP 991
Query: 350 AEEEKDQQQQLCELSCR 366
Q Q+ +CR
Sbjct: 992 KLNALPQNLQVTITNCR 1008
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 134/507 (26%), Positives = 207/507 (40%)
Query: 143 SNLVTLKFKDCGVCTTL--PSVGQLSSLKHLTVRGMSRVKSLGS--EFYGNDSPIPFP-C 197
SN V+L+ C L S LSSL L + G R+ +G D P
Sbjct: 1327 SNFVSLQLHSCTALEELIIQSCESLSSLDGLQLLGNLRLLQAHRCLSGHGEDGRCILPQS 1386
Query: 198 LETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEG- 256
LE L + E P S LR+LH++ S L ALE L+I+
Sbjct: 1387 LEELYIHEYSQ-ETLQPCFSGN----LTLLRKLHVLGNSNLVSLQLHSCTALEELIIQSC 1441
Query: 257 -SLCKFE----IGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLAGXXXXXXXXXXXXX 310
SL + +G + + R + H G + + ++++
Sbjct: 1442 ESLSSLDGLQLLGNLRLLQAHRCLSGH-GEDGRCILPQSLEELYIHEYSQETLQPCFSGN 1500
Query: 311 INDMKEQTYMWKSHNELLQ-DIC-SLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLE 368
+ +++ + S+ LQ C SL L I+SC L SL D Q L L
Sbjct: 1501 LTLLRKLHVLGNSNLVSLQLHSCTSLEELKIQSCESLSSL------DGLQLLGNLRLLQA 1554
Query: 369 YLILSCC--EGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSK--LEKIHIGACDA 424
+ LS +G LPQS L E+ I + S L + L + L+++ + +
Sbjct: 1555 HRCLSGHGEDGRCILPQS------LEELFISEYS-LETLQPCFLTNLTCLKQLEVSGTTS 1607
Query: 425 LKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTL---TVEE 481
LKSL E C ++LE L I+GC SL + +Q +L+++++ C + + E+
Sbjct: 1608 LKSL-ELQSC---TALEHLKIQGCASLATLEGLQFLHALRHMKVFRCPGLPPYLGSSSEQ 1663
Query: 482 GIPXXXXXXXXXXILEHLSIVGCPSLTCIFSKNELPATLESLSVYKC----SKLESIAER 537
G LE L I LT F K+ +L+ L + C ++L ER
Sbjct: 1664 GYELCPR-------LERLDIDDPSILTTSFCKHL--TSLQRLELNYCGSEVARLTDEQER 1714
Query: 538 -LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596
L TSL+ + +C NL LP+GLH+L L+ + I+ C ++ PE GLP EL
Sbjct: 1715 ALQLLTSLQELRFKYCYNLIDLPAGLHSLPSLKRLEIRSCRSIARLPEKGLP-PSFEELD 1773
Query: 597 IFQCERLEALPKGLHNLTSLQELTIGG 623
I C L + L S ++ I G
Sbjct: 1774 IIACSN--ELAQQCRTLASTLKVKING 1798
|
|
| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 96/368 (26%), Positives = 169/368 (45%)
Query: 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-VALPSKLEKIHIGACDA 424
+L+ L L C +++LP + ++ L+ + + +CSSLV P + L+ + +G C
Sbjct: 712 KLQVLCLHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLDLG-CLR 770
Query: 425 LKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIP 484
L LP + + TN L+ + GC SL + + ++L+NL + C ++ VE +P
Sbjct: 771 LLKLPLSIVKFTN--LKKFILNGCSSLVELPFMGNATNLQNLDLGNCSSL----VE--LP 822
Query: 485 XXXXXXXXXXILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSL 544
L++L + C SL + S LE L + KCS L I + + T+L
Sbjct: 823 SSIGNAIN---LQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNL 879
Query: 545 ETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604
+ ++ C +L LPS + N+ +L+ + + C NLV P L L + C L
Sbjct: 880 WRLDLSGCSSLVELPSSVGNISELQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLV 939
Query: 605 ALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSM-IERGRGFHRFS 663
LP + N+T+LQEL + ++ LP+++ +L + + + + +E
Sbjct: 940 ELPSSIGNITNLQELNLCNCSNLVK---LPSSIGNLHLLFTLSLARCQKLEALPSNINLK 996
Query: 664 SLRHLTIDGCDDDMVSFPPEDKRL------GTALP-LPAS------LTDLEIGRFPNLER 710
SL L + C SFP + GTA+ +P+S LT L + F L+
Sbjct: 997 SLERLDLTDCSQ-FKSFPEISTNIECLYLDGTAVEEVPSSIKSWSRLTVLHMSYFEKLKE 1055
Query: 711 LSSSIVDL 718
S ++D+
Sbjct: 1056 FSH-VLDI 1062
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 74/257 (28%), Positives = 126/257 (49%)
Query: 375 CEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-VALPSKLEKIHIGACDALKSLPEAWM 433
C LVKLP S +L +L+++ + +CSSLV P + L+++++ C +L +P +
Sbjct: 714 CSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIG 773
Query: 434 CDTNSSLEILYIEGCRSLTYIAAVQLPSSL-KNLQIHGCYNIKTLTVEEGIPXXXXXXXX 492
N L+ +Y +GC SL VQLPSS+ N + + + ++ E P
Sbjct: 774 NIVN--LKKVYADGCSSL-----VQLPSSIGNNTNLKELHLLNCSSLME-CPSSMLNLTR 825
Query: 493 XXILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFC 552
LE L++ GC SL + S + L+SL + CS L + ++N T+L+T+ ++ C
Sbjct: 826 ---LEDLNLSGCLSLVKLPSIGNV-INLQSLYLSDCSSLMELPFTIENATNLDTLYLDGC 881
Query: 553 ENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHN 612
NL LPS + N+ L+ + + C +L P L L + +C L LP +
Sbjct: 882 SNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWR 941
Query: 613 LTSLQELTIGGALPSLE 629
+++L L + LE
Sbjct: 942 ISNLSYLDVSNCSSLLE 958
|
|
| TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 82/293 (27%), Positives = 136/293 (46%)
Query: 326 ELLQDICSLRRLTIRSCPKLQSL--VAEEEKDQQQQLCELSC--RLEYLILSCCEGLVKL 381
EL LR+L +L++L + + ++L LS LE L L C LV+L
Sbjct: 697 ELHMSFSKLRKLW-EGTKQLRNLKWMDLSNSEDLKELPNLSTATNLEELKLRDCSSLVEL 755
Query: 382 PQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLE 441
P S L SL+ + + +CSSLV P +KLE++++ C +L+ LP + + N+ L+
Sbjct: 756 PSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYLENCSSLEKLPPS--INANN-LQ 812
Query: 442 ILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPXXXXXXXXXXILEHLSI 501
L + C + + A++ ++L+ L + C ++ L + G L+ L+I
Sbjct: 813 QLSLINCSRVVELPAIENATNLQKLDLGNCSSLIELPLSIGTATN---------LKELNI 863
Query: 502 VGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPS- 560
GC SL + S L+ + CS L + + N L+T+ + C LK P
Sbjct: 864 SGCSSLVKLPSSIGDITNLKEFDLSNCSNLVELPINI-NLKFLDTLNLAGCSQLKSFPEI 922
Query: 561 -------GLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEAL 606
+ +LR++ I C NLVS P+ LP + L+ L C+ LE L
Sbjct: 923 STKIFTDCYQRMSRLRDLRINNCNNLVSLPQ--LPDS-LAYLYADNCKSLERL 972
|
|
| TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 96/348 (27%), Positives = 155/348 (44%)
Query: 358 QQLCELSC--RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLE 415
++L +LS L LILS C L+KLP + +L ++ + CSSLV P L+
Sbjct: 690 KELPDLSTAINLRKLILSNCSSLIKLPSCIGNAINLEDLDLNGCSSLVELPSFGDAINLQ 749
Query: 416 KIHIGACDALKSLPEAWMCDTN-SSLEILYIEGCRSLTYIAAVQLPSSLKN------LQI 468
K+ + C L LP + N L++ Y C SL ++LPSS+ N L +
Sbjct: 750 KLLLRYCSNLVELPSSIGNAINLRELDLYY---CSSL-----IRLPSSIGNAINLLILDL 801
Query: 469 HGCYNIKTLTVEEGIPXXXXXXXXXXILEHLSIVGCPSLTCIFSKNELPATLESLSVYKC 528
+GC N+ L G L+ L + C L + S L++L + C
Sbjct: 802 NGCSNLLELPSSIG---------NAINLQKLDLRRCAKLLELPSSIGNAINLQNLLLDDC 852
Query: 529 SKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLP 588
S L + + N T+L + ++ C NL LP + NL++L+E+ ++ C L P +
Sbjct: 853 SSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQELILKGCSKLEDLPIN-IN 911
Query: 589 CAKLSELRIFQCERLEALPKGLHNL-------TSLQELTIG-GALPSLEE------DGLP 634
L L + C L+ P+ N+ T+++E+ + + P L+E D L
Sbjct: 912 LESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEEVPLSIRSWPRLDELLMSYFDNLV 971
Query: 635 TNLHSLDIRGNMEI-WKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFP 681
H LDI N+++ K + E R S L+ L + G +VS P
Sbjct: 972 EFPHVLDIITNLDLSGKEIQEVPPLIKRISRLQTLILKGYRK-VVSLP 1018
|
|
| TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 75/245 (30%), Positives = 116/245 (47%)
Query: 496 LEHLSIVGCPSLTCI-FSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCEN 554
LE L++ GC SL + FS L+ L + CS L + + N +L+TI + CEN
Sbjct: 699 LEVLNLNGCSSLVELPFSIGNATKLLK-LELSGCSSLLELPSSIGNAINLQTIDFSHCEN 757
Query: 555 LKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLT 614
L LPS + N L+E+ + C +L P C L +L + C L+ LP + N T
Sbjct: 758 LVELPSSIGNATNLKELDLSCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSSIGNCT 817
Query: 615 SLQEL--TIGGALPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTID 671
+L+EL T +L L G NL L + G +S++E + ++L+ L +
Sbjct: 818 NLKELHLTCCSSLIKLPSSIGNAINLEKLILAG----CESLVELPSFIGKATNLKILNL- 872
Query: 672 GCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPK 731
G +V P +G L++L + L+ L ++I +L+ L EL L DC
Sbjct: 873 GYLSCLVELP---SFIGNL----HKLSELRLRGCKKLQVLPTNI-NLEFLNELDLTDCIL 924
Query: 732 LKYFP 736
LK FP
Sbjct: 925 LKTFP 929
|
|
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 100/389 (25%), Positives = 163/389 (41%)
Query: 367 LEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALK 426
LE L LS C+ LV++ S +L L + C L P + LE + + C +LK
Sbjct: 650 LEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLK 709
Query: 427 SLPE-AWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEG--I 483
PE +W +T LY+ + +++ S L L + C ++TL G +
Sbjct: 710 HFPEISW--NTRR----LYLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLV 763
Query: 484 PXXXXXXXXXXILEHL--SIVGCPSLTCI-----FSKNELPATLESLSVYKCSK--LESI 534
LE+L ++ SL + + NE P S+ V + S+ +E I
Sbjct: 764 SLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTSIEVLRISETSIEEI 823
Query: 535 AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSE 594
R+ N + L ++ I+ + L LP + LR L ++ + C L SFP C +S
Sbjct: 824 PARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFPLE--ICQTMSC 881
Query: 595 LRIFQCER--LEALPKGLHNLTSLQELTIGGALPSLEEDGLP--TNLHSLDIRGNMEIWK 650
LR F +R ++ LP+ + NL +L+ L + + T L L I + +
Sbjct: 882 LRWFDLDRTSIKELPENIGNLVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPE 941
Query: 651 SMIER-GRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE 709
++ RF LR L++ + M P L L L DL G N E
Sbjct: 942 GLLHSLCPPLSRFDDLRALSLSNMN--MTEIPNSIGNLWNLLEL-----DLS-GN--NFE 991
Query: 710 RLSSSIVDLQNLTELCLRDCPKLKYFPEK 738
+ +SI L L L L +C +L+ P++
Sbjct: 992 FIPASIKRLTRLNRLNLNNCQRLQALPDE 1020
|
|
| TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 73/284 (25%), Positives = 131/284 (46%)
Query: 378 LVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTN 437
L KL + + L +L+ + + S L P ++ + LE++ + C +L LP + +
Sbjct: 703 LRKLWEGTKQLRNLKWMDLSYSSYLKELPNLSTATNLEELKLRNCSSLVELPSS--IEKL 760
Query: 438 SSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPXXXXXXXXXXILE 497
+SL+IL +E C SL + A++ + L+ L++ C ++ L + G L+
Sbjct: 761 TSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSLIELPLSIGTATN---------LK 811
Query: 498 HLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKI 557
L+I GC SL + S LE + CS L ++ + N +L + + C L+
Sbjct: 812 QLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEA 871
Query: 558 LPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617
LP + NL+ L + + C L SFPE +SELR+ + ++ +P + + + L
Sbjct: 872 LPINI-NLKSLDTLNLTDCSQLKSFPEIS---THISELRL-KGTAIKEVPLSIMSWSPLA 926
Query: 618 ELTIGGALPSLEED---GLPTNLH-SLDIRGNMEIWKSMIERGR 657
+ I +E + T LH S DI+ + W + R R
Sbjct: 927 DFQISYFESLMEFPHAFDIITKLHLSKDIQ-EVPPWVKRMSRLR 969
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 814 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-10 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 5e-09 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 6e-09 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 9e-05 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 1e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.001 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 67/260 (25%), Positives = 107/260 (41%), Gaps = 38/260 (14%)
Query: 376 EGLVKL--PQSSL--------SLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDAL 425
E LVKL S L SL LR I + +L P++++ + LE + + C +L
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670
Query: 426 KSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPS 485
LP + + LE L + C +L + SL L + GC +K+
Sbjct: 671 VELPSS--IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP------- 721
Query: 486 SSSSRYTSSILEHLSIVGCPSLTCIFSKNELP-ATLESLSVYKCSKLESIAERLDNNT-- 542
S+ + L+ +I PS L L+ L + + K E + ER+ T
Sbjct: 722 DISTNISWLDLDETAIEEFPS--------NLRLENLDELILCE-MKSEKLWERVQPLTPL 772
Query: 543 ------SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596
SL + ++ +L LPS + NL +L + I+ C NL + P G+ L L
Sbjct: 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GINLESLESLD 831
Query: 597 IFQCERLEALPKGLHNLTSL 616
+ C RL P N++ L
Sbjct: 832 LSGCSRLRTFPDISTNISDL 851
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 5e-09
Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 43/264 (16%)
Query: 363 LSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGAC 422
++ LE L LS C LV+LP S L L ++ + +C +L P L ++++ C
Sbjct: 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714
Query: 423 DALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLK--NLQIHGCYNIKTLTVE 480
LKS P D ++++ L ++ A + PS+L+ NL +K+ +
Sbjct: 715 SRLKSFP-----DISTNISWLDLDE------TAIEEFPSNLRLENLDELILCEMKSEKLW 763
Query: 481 EGI-PSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLD 539
E + P + S L L + PSL ELP+++++L
Sbjct: 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLV------ELPSSIQNL---------------- 801
Query: 540 NNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599
LE + I C NL+ LP+G+ NL L + + C L +FP+ +S+L +
Sbjct: 802 --HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNL-S 854
Query: 600 CERLEALPKGLHNLTSLQELTIGG 623
+E +P + ++L L + G
Sbjct: 855 RTGIEEVPWWIEKFSNLSFLDMNG 878
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 64/220 (29%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCE 601
T+LET+ ++ C +L LPS + L +L ++ + RC NL P G+ L L + C
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLNLSGCS 715
Query: 602 RLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLH--SLDIRGNMEIWKSMIERGRGF 659
RL++ P T++ L + ++EE P+NL +LD E ++ + +
Sbjct: 716 RLKSFPD---ISTNISWLDLDET--AIEE--FPSNLRLENLDELILCE-----MKSEKLW 763
Query: 660 HRFSSLRHLTIDGCDDDMVSFPPEDKRL-----GTALPLPAS------LTDLEIGRFPNL 708
R L L M P RL + + LP+S L LEI NL
Sbjct: 764 ERVQPLTPL--------MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815
Query: 709 ERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLS 748
E L + I +L++L L L C +L+ FP+ S L LS
Sbjct: 816 ETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLS 854
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 442 ILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLT--VEEGIPSSSSS--RYTSSILE 497
LYI+ C + + LP+ L + I C N+ TL + EG+ + S + E
Sbjct: 56 RLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE 112
Query: 498 HLSIVGCPSLTCIFS---KNELPATLESLSVYKCSKLESIAERLDN--NTSLETIGINFC 552
+ + + + KN +P L SLS+ + R+DN + SL+T+ + C
Sbjct: 113 SVRSL---EIKGSATDSIKN-VPNGLTSLSINSYNPENQA--RIDNLISPSLKTLSLTGC 166
Query: 553 ENLKI---LPSGL 562
N+ + LP L
Sbjct: 167 SNIILPEKLPESL 179
|
Length = 426 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 35/187 (18%)
Query: 390 SLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCR 449
L EI I C++L + P ++P LEK+ + C + LPE+ SLEI
Sbjct: 73 ELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPESV-----RSLEI----KGS 122
Query: 450 SLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTC 509
+ I V P+ L +L I+ YN + + + S S L+ LS+ GC +
Sbjct: 123 ATDSIKNV--PNGLTSLSINS-YNPENQARIDNLISPS--------LKTLSLTGCSN--- 168
Query: 510 IFSKNELPATLESLSVYKCSK--LESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567
I +LP +L+S++++ K E + + I+ ++ + P +
Sbjct: 169 IILPEKLPESLQSITLHIEQKTTWNISFEGFPDG-----LDIDLQNSVLLSPDVFKD--- 220
Query: 568 LREITIQ 574
+ IT Q
Sbjct: 221 -KNITFQ 226
|
Length = 426 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 12/163 (7%)
Query: 512 SKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREI 571
L + L+ L + +K+ES+ L N +L+ + ++F +L LP L NL L +
Sbjct: 134 LIGLLKSNLKELDLS-DNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191
Query: 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEED 631
+ + P + L EL + + L L NL +L L + +
Sbjct: 192 DLSGN-KISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSNNKLEDLPE 249
Query: 632 --GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672
G +NL +LD+ N I ++LR L + G
Sbjct: 250 SIGNLSNLETLDLSNN------QISSISSLGSLTNLRELDLSG 286
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 814 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.93 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.91 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.9 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.63 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.59 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.52 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.49 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.44 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.43 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.41 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.28 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.21 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.15 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.99 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.86 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.81 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.74 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.68 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.64 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.61 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.58 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.53 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.52 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.5 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.45 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.45 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.39 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.29 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.26 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.22 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.18 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.12 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.11 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.1 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.07 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.05 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.92 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.89 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.88 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.78 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.64 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.44 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.43 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.36 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.11 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.98 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.9 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.89 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.81 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.7 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.59 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.54 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.96 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.83 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.74 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.08 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.85 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.64 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 94.6 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.37 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.08 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.33 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 91.58 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 90.67 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.08 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.08 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 89.38 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=383.66 Aligned_cols=531 Identities=17% Similarity=0.152 Sum_probs=341.2
Q ss_pred CcCcccEEEeeeCCC-CCCccccCCCCCcccEEEEecCCCCCCCCC--CCCCCccceeeecCCcCceeeCccccCCCCCC
Q 035579 117 HKNLEQFGICGYGGT-KFPTWLGDCSFSNLVTLKFKDCGVCTTLPS--VGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193 (814)
Q Consensus 117 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (814)
..+++.|+++++.+. .+|..+. .+++|++|+|++|.+...+|. +..+++|++|++++|+....++. .
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--------~ 137 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--------G 137 (968)
T ss_pred CCcEEEEEecCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--------c
Confidence 357889999988644 3455554 689999999999987767774 55899999999998754333332 1
Q ss_pred CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeec
Q 035579 194 PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRS 273 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~ 273 (814)
.+++|++|+++++ .+....+.. ++.+++|++|++++|. +.+.+|..+.+++.|+. |++++|.
T Consensus 138 ~l~~L~~L~Ls~n-~~~~~~p~~----~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~------L~L~~n~------ 199 (968)
T PLN00113 138 SIPNLETLDLSNN-MLSGEIPND----IGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEF------LTLASNQ------ 199 (968)
T ss_pred ccCCCCEEECcCC-cccccCChH----HhcCCCCCEEECccCc-ccccCChhhhhCcCCCe------eeccCCC------
Confidence 2788999999884 444333222 5688999999999987 66577764444333322 3334442
Q ss_pred ccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHH
Q 035579 274 ATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEE 353 (814)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 353 (814)
+.+.+|..+.+++.|+.++++++.... ..+..+..+++|++|++++|.....++..
T Consensus 200 ---------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-- 255 (968)
T PLN00113 200 ---------------------LVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSS-- 255 (968)
T ss_pred ---------------------CcCcCChHHcCcCCccEEECcCCccCC-cCChhHhcCCCCCEEECcCceeccccChh--
Confidence 344556677777888888877776633 33444577788888888876433333322
Q ss_pred HHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC-CCCCCCCcEEEecccCCCCCCchhh
Q 035579 354 KDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-VALPSKLEKIHIGACDALKSLPEAW 432 (814)
Q Consensus 354 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~ 432 (814)
+..+ ++|++|++++|.+.+.+|..+..+++|++|++++|.....+|. +..+++|+.|++++|...+..|..+
T Consensus 256 ---l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 256 ---LGNL----KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ---HhCC----CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 4444 7788888888877777777777788888888877655445553 4557778888888877555666655
Q ss_pred hcCCCCCccEEEEecCCCCcccccc-cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCccccc
Q 035579 433 MCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIF 511 (814)
Q Consensus 433 ~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 511 (814)
..+++|+.|++++|.....+|.. ...++|+.|+++++ .....+.
T Consensus 329 --~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n---------------------------------~l~~~~p 373 (968)
T PLN00113 329 --TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN---------------------------------NLTGEIP 373 (968)
T ss_pred --hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC---------------------------------eeEeeCC
Confidence 67777888888776543333321 22234444544443 3222211
Q ss_pred ccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCC
Q 035579 512 SKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAK 591 (814)
Q Consensus 512 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 591 (814)
......++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|..+..+++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 11222345666666666666666666777777777777777777666666777777777777776555555555556667
Q ss_pred cceEeeccccccccccccccCCCCcceEEecC-ccCc-ccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEE
Q 035579 592 LSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPS-LEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 668 (814)
Q Consensus 592 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~-l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L 668 (814)
|+.|++++|...+.+|..+ ..++|+.|++++ .+.. ++. ...+++|++|++++|......+ ..+..+++|++|
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L 528 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP----DELSSCKKLVSL 528 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC----hHHcCccCCCEE
Confidence 7777777776555565543 346677777766 3332 221 3345677777777777665544 456777888888
Q ss_pred EEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEe
Q 035579 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLS 748 (814)
Q Consensus 669 ~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~ 748 (814)
++++|. ....+|... ..+++|+.|++++|+....+|..+..+++|++|++++|+-...+|..+...++....
T Consensus 529 ~Ls~N~-l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~ 600 (968)
T PLN00113 529 DLSHNQ-LSGQIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600 (968)
T ss_pred ECCCCc-ccccCChhH-------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence 888752 334455544 457788888888855445677777778888888888877666677655444555555
Q ss_pred ecCCch
Q 035579 749 ILSCPL 754 (814)
Q Consensus 749 i~~c~~ 754 (814)
+.++|.
T Consensus 601 ~~~n~~ 606 (968)
T PLN00113 601 VAGNID 606 (968)
T ss_pred hcCCcc
Confidence 555543
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=377.51 Aligned_cols=507 Identities=18% Similarity=0.165 Sum_probs=357.7
Q ss_pred CcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCc
Q 035579 143 SNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGV 221 (814)
Q Consensus 143 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 221 (814)
..++.|+++++...+.++ .+..+++|+.|++++|.-...++..... .+.+|++|++++ +++.+..+ .
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~-----~l~~L~~L~Ls~-n~l~~~~p------~ 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT-----TSSSLRYLNLSN-NNFTGSIP------R 136 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc-----cCCCCCEEECcC-CccccccC------c
Confidence 579999999988766665 4889999999999987533344443321 278888888887 34444332 3
Q ss_pred ccCCcccEEEEccCCCcccCCCCCC---CcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCC
Q 035579 222 EGFPKLRELHIISCSKLQGTFPEHL---PALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGP 298 (814)
Q Consensus 222 ~~l~~L~~L~l~~c~~l~~~lp~~l---~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (814)
+.+++|++|++++|. +++.+|..+ ++|+.|++ ++|. +.+.
T Consensus 137 ~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L---------~~n~---------------------------l~~~ 179 (968)
T PLN00113 137 GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDL---------GGNV---------------------------LVGK 179 (968)
T ss_pred cccCCCCEEECcCCc-ccccCChHHhcCCCCCEEEC---------ccCc---------------------------cccc
Confidence 467888888888887 665666533 44444444 4332 3344
Q ss_pred CCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCc
Q 035579 299 LKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGL 378 (814)
Q Consensus 299 ~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 378 (814)
+|..+.++++|+.++++++.... ..+..++.+++|++|++++|.....++.. +..+ ++|++|++++|.+.
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~~l----~~L~~L~L~~n~l~ 249 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYE-----IGGL----TSLNHLDLVYNNLT 249 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCChh-----HhcC----CCCCEEECcCceec
Confidence 55566666666666666665532 23344566667777777665433333322 3333 66777777776666
Q ss_pred cccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc
Q 035579 379 VKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV 457 (814)
Q Consensus 379 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 457 (814)
+.+|..+..+++|++|++++|.....+| .+..+++|+.|++++|...+.+|..+ ..+++|+.|++++|.....+
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~--- 324 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKI--- 324 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcC---
Confidence 6666666666677777776654433343 24446666677776666444555544 56666666666665432222
Q ss_pred cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHh
Q 035579 458 QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAER 537 (814)
Q Consensus 458 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 537 (814)
|..+. .+++|+.|++++|.....+.......++|+.|++++|.....+|..
T Consensus 325 --------------------------~~~~~---~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 325 --------------------------PVALT---SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred --------------------------ChhHh---cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 22111 1245666666665544332222334568999999999988889999
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 99999999999999999999999999999999999999977778888889999999999999987778888888999999
Q ss_pred eEEecC-ccC-ccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCC
Q 035579 618 ELTIGG-ALP-SLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 618 ~L~l~~-~~~-~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~ 695 (814)
.|++++ .+. .++.....++|+.|++++|......+ ..+..+++|+.|++++| .....+|... ..++
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~p~~~-------~~l~ 523 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP----RKLGSLSELMQLKLSEN-KLSGEIPDEL-------SSCK 523 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCccCCccC----hhhhhhhccCEEECcCC-cceeeCChHH-------cCcc
Confidence 999998 332 34443445899999999998876654 56889999999999996 2445677766 4689
Q ss_pred CcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCch
Q 035579 696 SLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCPL 754 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~~ 754 (814)
+|++|++++|.-...+|..+..+++|+.|++++|+....+|.... +++|+.+++++|+.
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 999999999554456787899999999999999866667776322 78999999999974
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-27 Score=240.29 Aligned_cols=360 Identities=17% Similarity=0.160 Sum_probs=236.7
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCC-CCCcEEEecccCCCCCCchhhhcCCCCCccEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP-SKLEKIHIGACDALKSLPEAWMCDTNSSLEIL 443 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 443 (814)
+.-+.|++++|.+...-+..|.++++|+++++.. +.++.+|.++.. .+|+.|++.+|. +..+...-. ..++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhhhh
Confidence 4455566666655444455556666666666655 355556655443 336666666665 333333222 455666666
Q ss_pred EEecCCCCcccccccCc--CccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCccccccc-CCCcccc
Q 035579 444 YIEGCRSLTYIAAVQLP--SSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSK-NELPATL 520 (814)
Q Consensus 444 ~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L 520 (814)
|++. +.+.+++...+| .++++|++++.. ++ .+.. ..+..+++|..|.++++...+- ... ...+++|
T Consensus 155 DLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It------~l~~--~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L 223 (873)
T KOG4194|consen 155 DLSR-NLISEIPKPSFPAKVNIKKLNLASNR-IT------TLET--GHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKL 223 (873)
T ss_pred hhhh-chhhcccCCCCCCCCCceEEeecccc-cc------cccc--ccccccchheeeecccCccccc-CHHHhhhcchh
Confidence 6666 345555554444 345566555542 11 1111 1111224566666665432221 111 2235678
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQ 599 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 599 (814)
+.|++..|..-..-.-.|.++++|+.|.|..|.+...-...|..+.++++|+++.| .+..+.. ...++++|+.|++++
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccch
Confidence 88888886544333446888888888888888888766677888889999999887 5666655 456788899999998
Q ss_pred ccccccccccccCCCCcceEEecC-ccCccccCC--CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 600 CERLEALPKGLHNLTSLQELTIGG-ALPSLEEDG--LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
|...+.-+++...+++|++|+++. .+..+++.. .+..|++|.++.|.+....- ..|..+.+|++||+++| .
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e----~af~~lssL~~LdLr~N--~ 376 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE----GAFVGLSSLHKLDLRSN--E 376 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh----hHHHHhhhhhhhcCcCC--e
Confidence 865555567778888999999988 888887643 36889999999998766544 67888999999999986 3
Q ss_pred CccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeec
Q 035579 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSIL 750 (814)
Q Consensus 677 l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~ 750 (814)
+...-+ +...++..+++|+.|++.+ |+++.||. .+..+++|++|++.+ +-+.+|-.+.+ +..|++|.+.
T Consensus 377 ls~~IE---Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 377 LSWCIE---DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred EEEEEe---cchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 322211 1234556789999999999 89999998 888999999999988 56888877666 5577777664
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-27 Score=258.06 Aligned_cols=501 Identities=19% Similarity=0.224 Sum_probs=329.0
Q ss_pred eeecCCCCccccccccCCCCCCCCccCceEEcCCCCCCccccccccCCCceEEEccccCCCChhhhHHhhcccCCCccee
Q 035579 9 HLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKEAQLDVKENLREL 88 (814)
Q Consensus 9 ~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L 88 (814)
.+|.+.+. ++.||..|-.=..+..|+...-.-. ....+-..+..+|+ +|++++.. ...++..+..+.+|+.|
T Consensus 2 ~vd~s~~~-l~~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~-~l~lsnn~-----~~~fp~~it~l~~L~~l 73 (1081)
T KOG0618|consen 2 HVDASDEQ-LELIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLK-SLDLSNNQ-----ISSFPIQITLLSHLRQL 73 (1081)
T ss_pred Cccccccc-CcccchhhccHHHHHhhhccccccc-cCchHHhhheeeeE-Eeeccccc-----cccCCchhhhHHHHhhc
Confidence 47889998 9999988766666777733211111 11133344444466 66666532 33445556777788888
Q ss_pred EEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCcc
Q 035579 89 LLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSL 168 (814)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 168 (814)
.++.|.+. .++.+..+.++|+.|.|.++....+|..+. .+++|+.|++++|.+....+.+..+..+
T Consensus 74 n~s~n~i~------------~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~--~lknl~~LdlS~N~f~~~Pl~i~~lt~~ 139 (1081)
T KOG0618|consen 74 NLSRNYIR------------SVPSSCSNMRNLQYLNLKNNRLQSLPASIS--ELKNLQYLDLSFNHFGPIPLVIEVLTAE 139 (1081)
T ss_pred ccchhhHh------------hCchhhhhhhcchhheeccchhhcCchhHH--hhhcccccccchhccCCCchhHHhhhHH
Confidence 88766554 345666778888888888888888887776 6888888888888876666678888888
Q ss_pred ceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCc
Q 035579 169 KHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPA 248 (814)
Q Consensus 169 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~ 248 (814)
+.+..++|-.+...+.. . .+.+++.. +.+...... ++..+.+ .|++.+|. +. .
T Consensus 140 ~~~~~s~N~~~~~lg~~---------~--ik~~~l~~-n~l~~~~~~----~i~~l~~--~ldLr~N~-~~-~------- 192 (1081)
T KOG0618|consen 140 EELAASNNEKIQRLGQT---------S--IKKLDLRL-NVLGGSFLI----DIYNLTH--QLDLRYNE-ME-V------- 192 (1081)
T ss_pred HHHhhhcchhhhhhccc---------c--chhhhhhh-hhcccchhc----chhhhhe--eeecccch-hh-h-------
Confidence 88888876332222211 1 33333322 111111110 1222333 36666665 32 1
Q ss_pred ccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhh
Q 035579 249 LEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELL 328 (814)
Q Consensus 249 L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~ 328 (814)
++ +.++..|+.+.|..|... .+-
T Consensus 193 ------------~d----------------------------------------ls~~~~l~~l~c~rn~ls-----~l~ 215 (1081)
T KOG0618|consen 193 ------------LD----------------------------------------LSNLANLEVLHCERNQLS-----ELE 215 (1081)
T ss_pred ------------hh----------------------------------------hhhccchhhhhhhhcccc-----eEE
Confidence 11 122222223333333221 011
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-C
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-E 407 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~ 407 (814)
..-++|+.|+.+.|+..+.... ..|.+|++++++.+.+ ..+|+++..+.+|+.+...+| .++.+| .
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~-----------p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N-~l~~lp~r 282 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVH-----------PVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHN-RLVALPLR 282 (1081)
T ss_pred ecCcchheeeeccCcceeeccc-----------cccccceeeecchhhh-hcchHHHHhcccceEecccch-hHHhhHHH
Confidence 2456778888888754422211 1347899999999986 667799999999999999985 456666 4
Q ss_pred CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCc---CccceeeeccccCCcccccccCCC
Q 035579 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLP---SSLKNLQIHGCYNIKTLTVEEGIP 484 (814)
Q Consensus 408 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~ 484 (814)
+....+|+.|.+..|. ++.+|... ..+.+|++|++..| .+..+|...+. .+++.+..+.. .+. ..|
T Consensus 283 i~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~------~lp 351 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLS------TLP 351 (1081)
T ss_pred HhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-ccc------ccc
Confidence 6668899999999998 88888876 77999999999985 46666553221 11222222211 111 111
Q ss_pred CCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCC
Q 035579 485 SSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHN 564 (814)
Q Consensus 485 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 564 (814)
.......+.|+.|.+.+|...+...+.+.++++|+.|+|++|.+.......+.+
T Consensus 352 --------------------------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 352 --------------------------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred --------------------------cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence 001223346999999999888888888999999999999999888766677889
Q ss_pred CCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcc--ccCCCCCceeEEE
Q 035579 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSL--EEDGLPTNLHSLD 641 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l--~~~~~~~~L~~L~ 641 (814)
++.|++|+++|| .++.+|..+..++.|++|...+| .+..+| .+.+++.|+.+|++. .+..+ +.....++|++|+
T Consensus 406 le~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 406 LEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred hHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 999999999998 88999999999999999999998 788888 788999999999998 44433 2222238999999
Q ss_pred ecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 642 IRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 642 l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
+++|....... ..|..+.++...++.-
T Consensus 483 lSGN~~l~~d~----~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 483 LSGNTRLVFDH----KTLKVLKSLSQMDITL 509 (1081)
T ss_pred ccCCcccccch----hhhHHhhhhhheeccc
Confidence 99998544333 3455555555555544
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-27 Score=254.48 Aligned_cols=394 Identities=20% Similarity=0.206 Sum_probs=205.9
Q ss_pred CCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccc
Q 035579 302 RLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKL 381 (814)
Q Consensus 302 ~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 381 (814)
.+..++.|+.++++.|.+ ...+..+..+..++.+..+++..+..+.. ..++.+++..+.+.+.+
T Consensus 109 ~~~~lknl~~LdlS~N~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~--------------~~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHF--GPIPLVIEVLTAEEELAASNNEKIQRLGQ--------------TSIKKLDLRLNVLGGSF 172 (1081)
T ss_pred hHHhhhcccccccchhcc--CCCchhHHhhhHHHHHhhhcchhhhhhcc--------------ccchhhhhhhhhcccch
Confidence 344444555555555544 22333444555555556665433333222 33667777777766666
Q ss_pred ccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcC
Q 035579 382 PQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPS 461 (814)
Q Consensus 382 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 461 (814)
+..+..+.. .|+|++|... ......+.+|+.++...|+ +..+. ..-++|+.|+.+.|... .......|.
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~-ls~l~-----~~g~~l~~L~a~~n~l~-~~~~~p~p~ 241 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQ-LSELE-----ISGPSLTALYADHNPLT-TLDVHPVPL 241 (1081)
T ss_pred hcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcc-cceEE-----ecCcchheeeeccCcce-eeccccccc
Confidence 665555554 5777775433 3345556666666666655 33222 12355555555554421 111112223
Q ss_pred ccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCC
Q 035579 462 SLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNN 541 (814)
Q Consensus 462 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 541 (814)
+++.++++.. ++. .+|+|+ .-+.+|+.++..+|.. ..+|..+..+
T Consensus 242 nl~~~dis~n-~l~------~lp~wi---------------------------~~~~nle~l~~n~N~l-~~lp~ri~~~ 286 (1081)
T KOG0618|consen 242 NLQYLDISHN-NLS------NLPEWI---------------------------GACANLEALNANHNRL-VALPLRISRI 286 (1081)
T ss_pred cceeeecchh-hhh------cchHHH---------------------------HhcccceEecccchhH-HhhHHHHhhh
Confidence 3333333222 111 112111 1112344444444322 4444444444
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCC-C-CCcceEeeccccccccccc-cccCCCCcce
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLP-C-AKLSELRIFQCERLEALPK-GLHNLTSLQE 618 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-l-~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~ 618 (814)
.+|+.|...+|.+... |.....+++|++|++..| .+.++|..+.. . .+|+.|..+.+ ++...|. .=..++.|+.
T Consensus 287 ~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhHHHHHhhhhhhhhC-CCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHH
Confidence 5555555554444332 223344455555555554 44444442211 1 12444444433 2333331 1123445666
Q ss_pred EEecC---ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCC
Q 035579 619 LTIGG---ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 619 L~l~~---~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~ 695 (814)
|++.+ +-..+|.......|+.|++++|.+...+. ..+.++..|++|++++| .+..+|... ..++
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa----s~~~kle~LeeL~LSGN--kL~~Lp~tv-------a~~~ 430 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA----SKLRKLEELEELNLSGN--KLTTLPDTV-------ANLG 430 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecccccccCCH----HHHhchHHhHHHhcccc--hhhhhhHHH-------Hhhh
Confidence 66655 34445555556777777777776655443 45667777777777776 777777665 4567
Q ss_pred CcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCC-CCc-CCccEEeecCCchhhHhhccCCCccccccCCc
Q 035579 696 SLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEK-GLP-SSLLRLSILSCPLIEEKCRKDGGQYWDLLTHI 773 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~l~-~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i 773 (814)
.|++|...+ |.+..+| .+..++.|+.+|++. ++|+.+... ..| ++|++||++|++.+. -+...+...+++
T Consensus 431 ~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-----~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 431 RLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV-----FDHKTLKVLKSL 502 (1081)
T ss_pred hhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcccc-----cchhhhHHhhhh
Confidence 777777777 6777777 778889999999976 678776432 346 899999999998532 122334444555
Q ss_pred cEEEeCCe
Q 035579 774 PFVRIDDK 781 (814)
Q Consensus 774 ~~~~~~~~ 781 (814)
...+++-+
T Consensus 503 ~~~~i~~~ 510 (1081)
T KOG0618|consen 503 SQMDITLN 510 (1081)
T ss_pred hheecccC
Confidence 55555443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-26 Score=231.55 Aligned_cols=358 Identities=17% Similarity=0.221 Sum_probs=246.3
Q ss_pred EEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCC
Q 035579 310 KINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLC 389 (814)
Q Consensus 310 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~ 389 (814)
+.+|+++|.+ ......+|.++++|+++++.+ +.++.+|...- .. .+|+.|+|.+|.+...-.+.+..++
T Consensus 81 ~~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~-----~s----ghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 81 QTLDLSNNKL-SHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGH-----ES----GHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred eeeecccccc-ccCcHHHHhcCCcceeeeecc-chhhhcccccc-----cc----cceeEEeeeccccccccHHHHHhHh
Confidence 3467777776 335566778999999999988 47887776421 11 5799999999988766666788889
Q ss_pred CcceEeeecCCCCcccCCCCC--CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccC--cCccce
Q 035579 390 SLREIGIYKCSSLVSFPEVAL--PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQL--PSSLKN 465 (814)
Q Consensus 390 ~L~~L~L~~~~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~L~~ 465 (814)
.|+.|||+. +.+..++.-.+ -.++++|++++|. ++.+....| ..+.+|..|.++.| .++.+|...| ++.|+.
T Consensus 150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 999999998 46677764333 4679999999998 666655554 77889999999884 4666665422 344555
Q ss_pred eeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcc
Q 035579 466 LQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLE 545 (814)
Q Consensus 466 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 545 (814)
|++.... ++ ... +.....+++|+.|.+..|+...--...|..+.+++
T Consensus 226 LdLnrN~-ir----------------------ive----------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 226 LDLNRNR-IR----------------------IVE----------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred hhccccc-ee----------------------eeh----------hhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 5544321 11 000 11112234677777777666655556677788888
Q ss_pred eEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccc-cccccCCCCcceEEecC-
Q 035579 546 TIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEAL-PKGLHNLTSLQELTIGG- 623 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~- 623 (814)
+|+|..|.+...-..++.++++|+.|++++|..-..-+.++.-+++|+.|++++| .++.+ +..+..+..|++|.++.
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc
Confidence 8888888877766677778888888888887444444456666778888888877 44444 44667777888888887
Q ss_pred ccCccccC--CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEE
Q 035579 624 ALPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLE 701 (814)
Q Consensus 624 ~~~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~ 701 (814)
.+..+.+. ..+++|++|++++|.+...+- +....|.++++|+.|++.+| .+++||...+ ..++.|++|+
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IE-Daa~~f~gl~~LrkL~l~gN--qlk~I~krAf------sgl~~LE~Ld 422 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIE-DAAVAFNGLPSLRKLRLTGN--QLKSIPKRAF------SGLEALEHLD 422 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEe-cchhhhccchhhhheeecCc--eeeecchhhh------ccCcccceec
Confidence 66666653 346888888888887655322 11245778888888888887 7888887653 6788888888
Q ss_pred eccCCCCccccc-ccccCCCCCeEEec
Q 035579 702 IGRFPNLERLSS-SIVDLQNLTELCLR 727 (814)
Q Consensus 702 l~~~~~l~~l~~-~~~~l~~L~~L~l~ 727 (814)
|.+ |.+.+|.. .+..+ .|++|.+.
T Consensus 423 L~~-NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 423 LGD-NAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred CCC-Ccceeecccccccc-hhhhhhhc
Confidence 888 77777755 66666 77777553
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=253.18 Aligned_cols=312 Identities=21% Similarity=0.274 Sum_probs=175.2
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEIL 443 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 443 (814)
.+|+.|++.+++. ..+|..+ ...+|++|++.++ .+..++ ....+++|+.|++++|..++.+|.. ..+++|++|
T Consensus 589 ~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETL 662 (1153)
T ss_pred cccEEEEecCCCC-CCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEE
Confidence 4566666665543 4445444 3455666666553 334443 2334556666666655555555542 445566666
Q ss_pred EEecCCCCcccccc-cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE
Q 035579 444 YIEGCRSLTYIAAV-QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522 (814)
Q Consensus 444 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 522 (814)
++++|..+..+|.. ..+++|+.|++.+|..++ .+|.. ..+++|+.
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp~~----------------------------i~l~sL~~ 708 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILPTG----------------------------INLKSLYR 708 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccCCc----------------------------CCCCCCCE
Confidence 66655555544432 333445555555555444 33332 23334445
Q ss_pred EEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCce------ecC-CCCCCCCCcceE
Q 035579 523 LSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLV------SFP-EGGLPCAKLSEL 595 (814)
Q Consensus 523 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~------~~~-~~~~~l~~L~~L 595 (814)
|++++|..+..+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++.... .++ .....+++|+.|
T Consensus 709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence 555544444444321 234555555554432 233322 34555555554432100 000 011123456666
Q ss_pred eeccccccccccccccCCCCcceEEecC--ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG--ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~--~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
++++|+.+..+|..++++++|+.|++++ .+..+|....+++|+.|++++|......+ ...++|+.|++++|
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p-------~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP-------DISTNISDLNLSRT 856 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc-------ccccccCEeECCCC
Confidence 6666666666666666666666666665 45555554456777777777776554332 12357888888886
Q ss_pred CCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 674 DDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 674 ~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
.+..+|... ..+++|+.|++++|++++.+|..+..+++|+.+++++|.+++.++-
T Consensus 857 --~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 857 --GIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred --CCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 677788766 4678888888888888888888788888888888888888876643
|
syringae 6; Provisional |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-28 Score=234.77 Aligned_cols=481 Identities=19% Similarity=0.258 Sum_probs=230.7
Q ss_pred CCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCCCC
Q 035579 114 LKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193 (814)
Q Consensus 114 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (814)
+..-..|+.+.++.|....+.+.+. .+..|++|++.+|+..+..|+++.+..++.++.+++ .+..++.+...
T Consensus 41 wW~qv~l~~lils~N~l~~l~~dl~--nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s----- 112 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVLREDLK--NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGS----- 112 (565)
T ss_pred hhhhcchhhhhhccCchhhccHhhh--cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhh-----
Confidence 3344567888888887776665554 678888888888887777777888888888888874 44444433322
Q ss_pred CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeec
Q 035579 194 PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRS 273 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~ 273 (814)
..+|.+|+++. +.+...... ++.+-.|+.++-.+|. +. ++|..
T Consensus 113 -~~~l~~l~~s~-n~~~el~~~-----i~~~~~l~dl~~~~N~-i~-slp~~---------------------------- 155 (565)
T KOG0472|consen 113 -LISLVKLDCSS-NELKELPDS-----IGRLLDLEDLDATNNQ-IS-SLPED---------------------------- 155 (565)
T ss_pred -hhhhhhhhccc-cceeecCch-----HHHHhhhhhhhccccc-cc-cCchH----------------------------
Confidence 44444444444 223322221 3344444444444444 33 33322
Q ss_pred ccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHH
Q 035579 274 ATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEE 353 (814)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 353 (814)
+ ..+.++..+++.+ ++++.+++...
T Consensus 156 -----------------------------~-------------------------~~~~~l~~l~~~~-n~l~~l~~~~i 180 (565)
T KOG0472|consen 156 -----------------------------M-------------------------VNLSKLSKLDLEG-NKLKALPENHI 180 (565)
T ss_pred -----------------------------H-------------------------HHHHHHHHhhccc-cchhhCCHHHH
Confidence 2 2233333333333 23344433322
Q ss_pred HHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhh
Q 035579 354 KDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWM 433 (814)
Q Consensus 354 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 433 (814)
. + ..|++||...|- ++.+|..++.+.+|+.|++.. +++..+|++..+..|+.++++.|. ++.+|....
T Consensus 181 ~-----m----~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~-i~~lpae~~ 248 (565)
T KOG0472|consen 181 A-----M----KRLKHLDCNSNL-LETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQ-IEMLPAEHL 248 (565)
T ss_pred H-----H----HHHHhcccchhh-hhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccH-HHhhHHHHh
Confidence 1 1 344444444443 244444455555555555554 244444444444555555555444 444444442
Q ss_pred cCCCCCccEEEEecCCCCccccccc-CcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCccc---
Q 035579 434 CDTNSSLEILYIEGCRSLTYIAAVQ-LPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTC--- 509 (814)
Q Consensus 434 ~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--- 509 (814)
.+++++..||+.+ +++++.|... ...+|++|++++. .+. .+|...+++ .|+.|.+.|.+.-+-
T Consensus 249 -~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is------~Lp~sLgnl----hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 249 -KHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DIS------SLPYSLGNL----HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred -cccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccc------cCCcccccc----eeeehhhcCCchHHHHHH
Confidence 3445555555554 2344444332 2233444444443 122 333333332 244444444321110
Q ss_pred cccc--CCCcccccEE----EEecc--------CCcchhhHhhcCCCCcceEeecccCCcccccccCCCC---CCccEEE
Q 035579 510 IFSK--NELPATLESL----SVYKC--------SKLESIAERLDNNTSLETIGINFCENLKILPSGLHNL---RQLREIT 572 (814)
Q Consensus 510 ~~~~--~~~~~~L~~L----~l~~~--------~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~ 572 (814)
+... ......|+.- -++.. ............+.+.+.|+++.-+++ .+|.....- .-....+
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~Vn 394 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVN 394 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEe
Confidence 0000 0000000000 00000 000000011222333444444442222 222211111 1134445
Q ss_pred ecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhh
Q 035579 573 IQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWK 650 (814)
Q Consensus 573 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~ 650 (814)
++.| .+.++|.....+..+.+.-+.+++++..+|..+..+++|..|++++ -+-++|. .+.+-.|+.|+++.|..-..
T Consensus 395 fskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l 473 (565)
T KOG0472|consen 395 FSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML 473 (565)
T ss_pred cccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccc
Confidence 5554 4444554444333333333333334444455555555555555555 3333332 23344466666666632221
Q ss_pred hhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCC
Q 035579 651 SMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCP 730 (814)
Q Consensus 651 ~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (814)
|..+..+..++.+-.++| .+..++.+.- ..+.+|.+||+.+ |.+..||+.++++++|++|+++++|
T Consensus 474 -----P~~~y~lq~lEtllas~n--qi~~vd~~~l------~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 474 -----PECLYELQTLETLLASNN--QIGSVDPSGL------KNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -----hHHHhhHHHHHHHHhccc--cccccChHHh------hhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 133444555666666655 7788877731 5688899999998 8999999999999999999999965
Q ss_pred CCCccCC
Q 035579 731 KLKYFPE 737 (814)
Q Consensus 731 ~l~~lp~ 737 (814)
++ .|.
T Consensus 540 -fr-~Pr 544 (565)
T KOG0472|consen 540 -FR-QPR 544 (565)
T ss_pred -cC-CCH
Confidence 44 554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-26 Score=234.93 Aligned_cols=363 Identities=16% Similarity=0.197 Sum_probs=277.2
Q ss_pred eEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCC
Q 035579 308 ELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLS 387 (814)
Q Consensus 308 ~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~ 387 (814)
..+-.|+++|.+.+...+.....+.+++-|.+.. ..+.++|.+ +..+ .+|++|.+++|.. ..+...+..
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~vhGELs~ 76 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQL-ISVHGELSD 76 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhhh-Hhhhhhhcc
Confidence 3444566667666556666667888888888887 578887775 5555 7888888888875 455556778
Q ss_pred CCCcceEeeecCCCC-cccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccce
Q 035579 388 LCSLREIGIYKCSSL-VSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKN 465 (814)
Q Consensus 388 l~~L~~L~L~~~~~l-~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 465 (814)
++.|+.+.++.|+.- ..+| ++..+..|..|++++|+ +...|... ..-.++-.|++++|+ +..+|
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~N~-IetIP---------- 142 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSYNN-IETIP---------- 142 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEcccCc-cccCC----------
Confidence 888888888875422 2244 46668888888888887 78888776 677778888888743 44333
Q ss_pred eeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcc
Q 035579 466 LQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLE 545 (814)
Q Consensus 466 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 545 (814)
...+. .+..|-.|++++ +.++.+|+.+..+.+|+
T Consensus 143 -------------------n~lfi--------------------------nLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 143 -------------------NSLFI--------------------------NLTDLLFLDLSN-NRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred -------------------chHHH--------------------------hhHhHhhhcccc-chhhhcCHHHHHHhhhh
Confidence 21110 011344566666 46677888888899999
Q ss_pred eEeecccCCcccccccCCCCCCccEEEecCCC-CceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-
Q 035579 546 TIGINFCENLKILPSGLHNLRQLREITIQRCG-NLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG- 623 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~- 623 (814)
+|+|++|.+...--..+..+++|++|.+++.. -+..+|.++..+.+|..+|++.| .+..+|..+.++++|+.|++++
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC
Confidence 99999988765333345567888888888753 35568888888999999999887 7888999999999999999998
Q ss_pred ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEe
Q 035579 624 ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEI 702 (814)
Q Consensus 624 ~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l 702 (814)
.++.+.. .+...+|++|+++.|.+...+ ..+..++.|+.|.+.+|....+.||.++ +.+.+|+.+..
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQLt~LP-----~avcKL~kL~kLy~n~NkL~FeGiPSGI-------GKL~~Levf~a 323 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQLTVLP-----DAVCKLTKLTKLYANNNKLTFEGIPSGI-------GKLIQLEVFHA 323 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccchhccch-----HHHhhhHHHHHHHhccCcccccCCccch-------hhhhhhHHHHh
Confidence 7776654 345689999999999876653 5788999999999999888899999998 47899999999
Q ss_pred ccCCCCcccccccccCCCCCeEEecCCCCCCccCCC-CCcCCccEEeecCCchhh
Q 035579 703 GRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEK-GLPSSLLRLSILSCPLIE 756 (814)
Q Consensus 703 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~l~~~L~~L~i~~c~~l~ 756 (814)
++ |+++-+|.++..|..|+.|.+++ +++-.+|+. .+++.|+.||+..+|.+.
T Consensus 324 an-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 324 AN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 99 89999999999999999999976 788889875 348999999999998765
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-27 Score=232.35 Aligned_cols=469 Identities=20% Similarity=0.216 Sum_probs=259.0
Q ss_pred cCCCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCC
Q 035579 112 DMLKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDS 191 (814)
Q Consensus 112 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (814)
+.+..+..|.+|+++++....+|..++ .+.++..++.++|+...-.+.++.+.+|+.++++.+ ...+.+.++..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig--~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~--- 135 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIG--ELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGR--- 135 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHH--HHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHH---
Confidence 345556667777777777777777776 577777777777775555556777777777777774 44444444433
Q ss_pred CCCCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCC---CCCcccceeeccccceeEEcCCCc
Q 035579 192 PIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGSLCKFEIGGCKK 268 (814)
Q Consensus 192 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~l~~l~l~~c~~ 268 (814)
+-.|+.|+..+ +++...... +.++.+|..+++.++. ++ .+|. .+..|++|+. |.
T Consensus 136 ---~~~l~dl~~~~-N~i~slp~~-----~~~~~~l~~l~~~~n~-l~-~l~~~~i~m~~L~~ld~-----------~~- 192 (565)
T KOG0472|consen 136 ---LLDLEDLDATN-NQISSLPED-----MVNLSKLSKLDLEGNK-LK-ALPENHIAMKRLKHLDC-----------NS- 192 (565)
T ss_pred ---Hhhhhhhhccc-cccccCchH-----HHHHHHHHHhhccccc-hh-hCCHHHHHHHHHHhccc-----------ch-
Confidence 55666666655 344443322 4567777888888877 65 5554 2334444443 11
Q ss_pred eeeecccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccc
Q 035579 269 VVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSL 348 (814)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 348 (814)
..-+.+|+.++.+++|..+++..|++. ..+ .|..+..|++|.+.. +.++.+
T Consensus 193 -------------------------N~L~tlP~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~-N~i~~l 243 (565)
T KOG0472|consen 193 -------------------------NLLETLPPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGE-NQIEML 243 (565)
T ss_pred -------------------------hhhhcCChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcc-cHHHhh
Confidence 234566778888888888888877761 222 346666677776666 355555
Q ss_pred hhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCC
Q 035579 349 VAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKS 427 (814)
Q Consensus 349 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~ 427 (814)
+.+ ...++ +++.+||+..|.+ +++|+.+..+++|+.||+++| .++.+| .++.+ +|+.|-+.+|. ++.
T Consensus 244 pae----~~~~L----~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP-lrT 311 (565)
T KOG0472|consen 244 PAE----HLKHL----NSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP-LRT 311 (565)
T ss_pred HHH----Hhccc----ccceeeecccccc-ccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc-hHH
Confidence 543 23344 6677777777763 666777777777777777764 444444 45556 67777777776 544
Q ss_pred CchhhhcCC-CCCccEEEE-ecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCC-CCCCCCCccEEeecCC
Q 035579 428 LPEAWMCDT-NSSLEILYI-EGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSS-SRYTSSILEHLSIVGC 504 (814)
Q Consensus 428 ~~~~~~~~~-l~~L~~L~l-~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~ 504 (814)
+...+..++ -.-|++|.= ..|..+. ....-+. .+...|.+.+ .....-..+.|++++-
T Consensus 312 iRr~ii~~gT~~vLKyLrs~~~~dglS-----------------~se~~~e--~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 312 IRREIISKGTQEVLKYLRSKIKDDGLS-----------------QSEGGTE--TAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred HHHHHHcccHHHHHHHHHHhhccCCCC-----------------CCccccc--ccCCCCCCcccchhhhhhhhhhccccc
Confidence 443332110 000111100 0000000 0000000 0001111111 1111122344443331
Q ss_pred CCcccccccC----CCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCce
Q 035579 505 PSLTCIFSKN----ELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLV 580 (814)
Q Consensus 505 ~~l~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 580 (814)
. ++. .|.. +-..-...++++.| .+.++|..+..++.+.+.-+..|+..+.+|..+..+++|.-|++++| .+.
T Consensus 373 q-lt~-VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln 448 (565)
T KOG0472|consen 373 Q-LTL-VPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLN 448 (565)
T ss_pred c-ccc-CCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhh
Confidence 1 111 1110 00112455666663 44556666666666655555555666666666777777777777765 666
Q ss_pred ecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccC
Q 035579 581 SFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFH 660 (814)
Q Consensus 581 ~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 660 (814)
.+|..++.+..|+.++++.| ..+.+|..+..+..++.+-. ++|......+ ..++
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtlla---------------------s~nqi~~vd~----~~l~ 502 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLA---------------------SNNQIGSVDP----SGLK 502 (565)
T ss_pred hcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHh---------------------ccccccccCh----HHhh
Confidence 77777776667777777776 55666655544444443333 3333332222 3466
Q ss_pred CCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCc
Q 035579 661 RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE 709 (814)
Q Consensus 661 ~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 709 (814)
++.+|..||+.+| .+..+|... +.+++|++|++++ |.++
T Consensus 503 nm~nL~tLDL~nN--dlq~IPp~L-------gnmtnL~hLeL~g-Npfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNN--DLQQIPPIL-------GNMTNLRHLELDG-NPFR 541 (565)
T ss_pred hhhhcceeccCCC--chhhCChhh-------ccccceeEEEecC-CccC
Confidence 6777777777766 677777776 3677777777777 4555
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=244.66 Aligned_cols=307 Identities=22% Similarity=0.322 Sum_probs=220.9
Q ss_pred CCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCC
Q 035579 331 ICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVAL 410 (814)
Q Consensus 331 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 410 (814)
.++|+.|.+.++ .++.+|.. + .+.+|+.|++.+|.+ ..++..+..+++|+.|+|++|..++.+|.+..
T Consensus 588 p~~Lr~L~~~~~-~l~~lP~~-----f-----~~~~L~~L~L~~s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 588 PPKLRLLRWDKY-PLRCMPSN-----F-----RPENLVKLQMQGSKL-EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred CcccEEEEecCC-CCCCCCCc-----C-----CccCCcEEECcCccc-cccccccccCCCCCEEECCCCCCcCcCCcccc
Confidence 356999999986 46666653 1 127999999999974 67788888999999999999988999999999
Q ss_pred CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCC
Q 035579 411 PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSR 490 (814)
Q Consensus 411 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 490 (814)
+++|+.|++++|..+..+|..+ ..+++|+.|++++|..++.+|....+++|+.|++++|..++ .+|..
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~------~~p~~---- 723 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK------SFPDI---- 723 (1153)
T ss_pred CCcccEEEecCCCCccccchhh--hccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcc------ccccc----
Confidence 9999999999999899999887 88999999999999999999887678889999999998776 55542
Q ss_pred CCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcc-------hhhHhhcCCCCcceEeecccCCcccccccCC
Q 035579 491 YTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLE-------SIAERLDNNTSLETIGINFCENLKILPSGLH 563 (814)
Q Consensus 491 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 563 (814)
..+|++|+++++. +.. +|....+++|+.|.+.++.... ..+......++|+.|++++|.....+|..++
T Consensus 724 --~~nL~~L~L~~n~-i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 724 --STNISWLDLDETA-IEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred --cCCcCeeecCCCc-ccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 1468888887765 333 3433345567777776643211 0111223346777777777777777777777
Q ss_pred CCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcccc-CCCCCceeEEE
Q 035579 564 NLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE-DGLPTNLHSLD 641 (814)
Q Consensus 564 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~ 641 (814)
++++|+.|++++|..++.+|..+ .+++|+.|++++|..++.+|.. .++|+.|++++ .+..+|. ...+++|+.|+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence 77778888887777777777654 5677777777777777666643 24666666666 5555543 34456666666
Q ss_pred ecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 642 IRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 642 l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++|+.+...+ ..+..+++|+.+++++|
T Consensus 876 L~~C~~L~~l~----~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 876 MNGCNNLQRVS----LNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCCCcCccC----cccccccCCCeeecCCC
Confidence 66665555433 33455566666666653
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-24 Score=223.23 Aligned_cols=355 Identities=18% Similarity=0.254 Sum_probs=239.6
Q ss_pred cccc-CCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEE
Q 035579 293 VFLA-GPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLI 371 (814)
Q Consensus 293 ~~~~-~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~ 371 (814)
+.++ +.+|.....++.++.+.+..... ...+.-++.+.+|++|.++++ ++..+..+ +..+ +.|+.++
T Consensus 17 NDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN-~L~~vhGE-----Ls~L----p~LRsv~ 84 (1255)
T KOG0444|consen 17 NDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHN-QLISVHGE-----LSDL----PRLRSVI 84 (1255)
T ss_pred CcCCCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhh-hhHhhhhh-----hccc----hhhHHHh
Confidence 3444 56788888888888888776655 345666789999999999995 56555433 4445 8999999
Q ss_pred eeccCCcc-ccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCC
Q 035579 372 LSCCEGLV-KLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCR 449 (814)
Q Consensus 372 L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 449 (814)
+..|..-. -+|..+..+..|..|||++| .++..| .+....++-.|++++|+ +..+|...+ .++..|-.||+++|.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSNNR 161 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhccccch
Confidence 99887654 57888999999999999995 677777 46678899999999998 999998877 889999999999854
Q ss_pred CCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccC
Q 035579 450 SLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCS 529 (814)
Q Consensus 450 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 529 (814)
+..+| +..+.| ..|++|++++++....-+.......+|++|.+++.+
T Consensus 162 -Le~LP-----PQ~RRL---------------------------~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 162 -LEMLP-----PQIRRL---------------------------SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred -hhhcC-----HHHHHH---------------------------hhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 44333 222222 124444444433221111112223467777777765
Q ss_pred Cc-chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccc
Q 035579 530 KL-ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPK 608 (814)
Q Consensus 530 ~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~ 608 (814)
.+ ..+|..+..+.+|..+|++.|.+. .+|..+.++++|+.|++++| .++.+........+|++|+++.| .++.+|.
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~ 285 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN-QLTVLPD 285 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc-hhccchH
Confidence 43 457778888888888888876654 45677788888888888887 67777666666678888888887 7778888
Q ss_pred cccCCCCcceEEecC---ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccc
Q 035579 609 GLHNLTSLQELTIGG---ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPED 684 (814)
Q Consensus 609 ~~~~l~~L~~L~l~~---~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~ 684 (814)
.+..++.|+.|.+.+ .+..+|. ++.+.+|+++..++|.+.-. |.+++++..|+.|.+++| .+.++|+.+
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-----PEglcRC~kL~kL~L~~N--rLiTLPeaI 358 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-----PEGLCRCVKLQKLKLDHN--RLITLPEAI 358 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-----chhhhhhHHHHHhccccc--ceeechhhh
Confidence 777777777776655 4444443 44455556655555543221 145555666666666554 555566555
Q ss_pred cccCCCCCCCCCcceEEeccCCCCcccc
Q 035579 685 KRLGTALPLPASLTDLEIGRFPNLERLS 712 (814)
Q Consensus 685 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (814)
..++.|+.|++..++++..-|
T Consensus 359 -------HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 359 -------HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -------hhcCCcceeeccCCcCccCCC
Confidence 345556666666555554433
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=168.63 Aligned_cols=256 Identities=28% Similarity=0.358 Sum_probs=135.6
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
.+-..|+++++.+ ..+|..+. ++|+.|++.+| .++.+|. .+++|++|++++|+ +..+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 3456777777764 45666554 36777877774 5666664 35777888887776 6666542 35677777
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++. .+.+|+.|++.++ +++ .+|. .+++|+.|+
T Consensus 269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~N-~Lt------~LP~------------------------------~p~~L~~Ld 308 (788)
T PRK15387 269 IFSNP-LTHLPA--LPSGLCKLWIFGN-QLT------SLPV------------------------------LPPGLQELS 308 (788)
T ss_pred ccCCc-hhhhhh--chhhcCEEECcCC-ccc------cccc------------------------------cccccceeE
Confidence 77653 443332 2333444444333 111 1111 122444555
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|... .+|.. ..+|+.|++++|.+.+ +|.. ..+|+.|++++| .+..+|.. .++|+.|++++| .+.
T Consensus 309 LS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L~ 375 (788)
T PRK15387 309 VSDNQLA-SLPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLT 375 (788)
T ss_pred CCCCccc-cCCCC---cccccccccccCcccc-cccc---ccccceEecCCC-ccCCCCCC---Ccccceehhhcc-ccc
Confidence 5444222 22221 1234445555544432 2211 124555555554 33444431 124444455444 233
Q ss_pred cccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccc
Q 035579 605 ALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPED 684 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~ 684 (814)
.+| .. +.+|+.|++++|.+...+. ..++|+.|++++| .+..+|..
T Consensus 376 ~LP----------------------~l--~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N--~LssIP~l- 420 (788)
T PRK15387 376 SLP----------------------AL--PSGLKELIVSGNRLTSLPV--------LPSELKELMVSGN--RLTSLPML- 420 (788)
T ss_pred cCc----------------------cc--ccccceEEecCCcccCCCC--------cccCCCEEEccCC--cCCCCCcc-
Confidence 333 21 2456666666665543211 1246777777776 56666642
Q ss_pred cccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCC
Q 035579 685 KRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCP 730 (814)
Q Consensus 685 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (814)
+.+|+.|++++ |.++.+|..+..+++|+.|++++++
T Consensus 421 ---------~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 ---------PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---------hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 35677777777 6777777777777777888877743
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=162.71 Aligned_cols=254 Identities=26% Similarity=0.337 Sum_probs=156.9
Q ss_pred CCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeee
Q 035579 389 CSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQI 468 (814)
Q Consensus 389 ~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 468 (814)
..-..|+++++ .++.+|. ...++|+.|++.+|+ +..+|.. .++|++|++++| .++.+|. .+++|+.|++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC-----CCCCcEEEecCC-ccCcccC--cccccceeec
Confidence 34567888885 6667775 234578888888877 6667653 467888888775 4444431 2333444433
Q ss_pred ccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEe
Q 035579 469 HGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIG 548 (814)
Q Consensus 469 ~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 548 (814)
.++ . +..+|.. ..+|+.|+
T Consensus 270 s~N---------------------------------------------------------~-L~~Lp~l---p~~L~~L~ 288 (788)
T PRK15387 270 FSN---------------------------------------------------------P-LTHLPAL---PSGLCKLW 288 (788)
T ss_pred cCC---------------------------------------------------------c-hhhhhhc---hhhcCEEE
Confidence 332 1 1122211 12344444
Q ss_pred ecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCc
Q 035579 549 INFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPS 627 (814)
Q Consensus 549 L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~ 627 (814)
+++|.+.. +|. ..++|+.|++++| .+..+|.. ..+|+.|++++| .++.+|.. ..+|+.|++++ .+..
T Consensus 289 Ls~N~Lt~-LP~---~p~~L~~LdLS~N-~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 289 IFGNQLTS-LPV---LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQLAS 356 (788)
T ss_pred CcCCcccc-ccc---cccccceeECCCC-ccccCCCC---cccccccccccC-cccccccc---ccccceEecCCCccCC
Confidence 44444432 222 1245556666555 34444431 124555666655 44445431 13566666666 5555
Q ss_pred cccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCC
Q 035579 628 LEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPN 707 (814)
Q Consensus 628 l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~ 707 (814)
+|. .+++|+.|++++|.+...+ . ...+|+.|++++| .+..+|.. +++|+.|++++ |.
T Consensus 357 LP~--lp~~L~~L~Ls~N~L~~LP-----~---l~~~L~~LdLs~N--~Lt~LP~l----------~s~L~~LdLS~-N~ 413 (788)
T PRK15387 357 LPT--LPSELYKLWAYNNRLTSLP-----A---LPSGLKELIVSGN--RLTSLPVL----------PSELKELMVSG-NR 413 (788)
T ss_pred CCC--CCcccceehhhccccccCc-----c---cccccceEEecCC--cccCCCCc----------ccCCCEEEccC-Cc
Confidence 543 2468888999988766432 1 2357999999997 77778853 47899999999 78
Q ss_pred CcccccccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCc
Q 035579 708 LERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCP 753 (814)
Q Consensus 708 l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~ 753 (814)
++.+|.. +.+|+.|++++ ++++.+|.... +++|+.|++++|+
T Consensus 414 LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 414 LTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 9999853 35789999999 57999997532 7899999999997
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.6e-16 Score=153.09 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=82.3
Q ss_pred ccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeec
Q 035579 295 LAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSC 374 (814)
Q Consensus 295 ~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 374 (814)
++..-+.+|..+++|+.+|+++|.+.. +.+..|..++++.+|-+.+++++++++...| ..+ ..|+.|.+.-
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F----~gL----~slqrLllNa 149 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAF----GGL----SSLQRLLLNA 149 (498)
T ss_pred cccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHh----hhH----HHHHHHhcCh
Confidence 444445678888888888888887733 4566678888888888888778888887644 333 6677777777
Q ss_pred cCCccccccccCCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccC
Q 035579 375 CEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACD 423 (814)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~ 423 (814)
|++.-...+.+..+++|..|.+.++ .+..++. +..+..++.+++..|.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 7765555667777888888887773 5555554 3336667777766665
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-14 Score=157.58 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=31.5
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+|+.|++++|.. ..+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++| .+..+|..+. ++|+.|+++
T Consensus 263 ~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls 333 (754)
T PRK15370 263 ALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSN-SLTALPETLP--PGLKTLEAG 333 (754)
T ss_pred CCCEEECcCCcc-CccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCC-ccccCCcccc--ccceecccc
Confidence 344455544322 23443322 355555555554443 22222 124555555554 3333443222 345555555
Q ss_pred cc
Q 035579 599 QC 600 (814)
Q Consensus 599 ~~ 600 (814)
+|
T Consensus 334 ~N 335 (754)
T PRK15370 334 EN 335 (754)
T ss_pred CC
Confidence 54
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-13 Score=153.12 Aligned_cols=179 Identities=22% Similarity=0.383 Sum_probs=92.3
Q ss_pred CCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCC
Q 035579 412 SKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRY 491 (814)
Q Consensus 412 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 491 (814)
.+...|+++++. +..+|..+ .++|+.|++++| .++.+|... +.+|+.|+++++ +++ .+|.
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~I----p~~L~~L~Ls~N-~LtsLP~~l-~~nL~~L~Ls~N-~Lt------sLP~------ 237 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACI----PEQITTLILDNN-ELKSLPENL-QGNIKTLYANSN-QLT------SIPA------ 237 (754)
T ss_pred cCceEEEeCCCC-cCcCCccc----ccCCcEEEecCC-CCCcCChhh-ccCCCEEECCCC-ccc------cCCh------
Confidence 356778888876 77777654 357888888875 455544322 234555554443 122 1111
Q ss_pred CCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEE
Q 035579 492 TSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREI 571 (814)
Q Consensus 492 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 571 (814)
.++++|+.|++++|... .+|..+. .+|+.|++++|.+.. +|..+. ++|+.|
T Consensus 238 -----------------------~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L 288 (754)
T PRK15370 238 -----------------------TLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYL 288 (754)
T ss_pred -----------------------hhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEE
Confidence 12235666666665433 4454443 366777777666553 444332 466777
Q ss_pred EecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCc
Q 035579 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 572 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
++++| .++.+|..+. ++|+.|++++| .+..+|..+. ++|+.|++++ .+..+|. ..+++|+.|++++|.
T Consensus 289 ~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~ 357 (754)
T PRK15370 289 SVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENALTSLPA-SLPPELQVLDVSKNQ 357 (754)
T ss_pred ECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCccccCCh-hhcCcccEEECCCCC
Confidence 77666 4555554332 35666666665 4444543321 3444444444 3333332 112344444444443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-15 Score=147.17 Aligned_cols=281 Identities=20% Similarity=0.218 Sum_probs=173.5
Q ss_pred CCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCccccc
Q 035579 400 SSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTV 479 (814)
Q Consensus 400 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 479 (814)
..++.+|. ..++.-..+++..|+ ++.+|+..| +.+++|+.||++.|. ++.|....|..
T Consensus 56 ~GL~eVP~-~LP~~tveirLdqN~-I~~iP~~aF-~~l~~LRrLdLS~N~-Is~I~p~AF~G------------------ 113 (498)
T KOG4237|consen 56 KGLTEVPA-NLPPETVEIRLDQNQ-ISSIPPGAF-KTLHRLRRLDLSKNN-ISFIAPDAFKG------------------ 113 (498)
T ss_pred CCcccCcc-cCCCcceEEEeccCC-cccCChhhc-cchhhhceecccccc-hhhcChHhhhh------------------
Confidence 34555552 235566677777777 777777666 777777777777743 33332221110
Q ss_pred ccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhh-HhhcCCCCcceEeecccCCcccc
Q 035579 480 EEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIA-ERLDNNTSLETIGINFCENLKIL 558 (814)
Q Consensus 480 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~ 558 (814)
..++.+|-+.+++.++.+| ..|+++.+++-|.+.-|++.-..
T Consensus 114 -------------------------------------L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 114 -------------------------------------LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred -------------------------------------hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 0123333333433344443 35777777777777777777777
Q ss_pred cccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccc------------cccccccCCCCcceEEecC-c
Q 035579 559 PSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLE------------ALPKGLHNLTSLQELTIGG-A 624 (814)
Q Consensus 559 ~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~------------~lp~~~~~l~~L~~L~l~~-~ 624 (814)
.+.+..+++|..|.+.+| .++.++. .+.++..++.+++..|+.+. ..|..++...-..-..+.+ .
T Consensus 157 ~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 777777888888888776 6666766 56677778888777775221 1122222222221111222 2
Q ss_pred cCccccCCCCCceeEE---EecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEE
Q 035579 625 LPSLEEDGLPTNLHSL---DIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLE 701 (814)
Q Consensus 625 ~~~l~~~~~~~~L~~L---~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~ 701 (814)
+.+++...+...++.+ ..+.|......+. ..|+.+++|+.|++++| .+..|.+.++ .....+++|.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN--~i~~i~~~aF------e~~a~l~eL~ 304 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNN--KITRIEDGAF------EGAAELQELY 304 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChH---HHHhhcccceEeccCCC--ccchhhhhhh------cchhhhhhhh
Confidence 3333322222222222 2233322222222 56889999999999987 7888888775 5678899999
Q ss_pred eccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 702 IGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 702 l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
|.. |+++.+.. .+.++..|+.|++++ ++++.+....+ ..+|.+|.+..+|
T Consensus 305 L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 305 LTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 999 88998877 678899999999999 68888877666 6788888888765
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-15 Score=128.52 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=115.6
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
+..+.+.+.|.+++|+++. +|..+..+.+|+.|++++| .++++|..+.++++|+.|+++-| .+..+|.+|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhh
Confidence 3445556666666665553 3345666666666666665 56666666666666666666655 5556666665555555
Q ss_pred eEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCc
Q 035579 618 ELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASL 697 (814)
Q Consensus 618 ~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L 697 (814)
. ||+..|+......+ ..|..++.|+.|++++| ..+.+|.+. +.+++|
T Consensus 106 v---------------------ldltynnl~e~~lp---gnff~m~tlralyl~dn--dfe~lp~dv-------g~lt~l 152 (264)
T KOG0617|consen 106 V---------------------LDLTYNNLNENSLP---GNFFYMTTLRALYLGDN--DFEILPPDV-------GKLTNL 152 (264)
T ss_pred h---------------------hhccccccccccCC---cchhHHHHHHHHHhcCC--CcccCChhh-------hhhcce
Confidence 4 45555544433332 55677888999999997 899999998 478999
Q ss_pred ceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 698 TDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 698 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
+.|.++. |.+-++|..++.++.|+.|++.+ ++++.+|+
T Consensus 153 qil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 153 QILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred eEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 9999999 88899999999999999999999 68988876
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-14 Score=122.50 Aligned_cols=161 Identities=20% Similarity=0.306 Sum_probs=121.0
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEe
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 596 (814)
.+.++.|.+++| .+..+|+.++.+.+|+.|++.+|++. .+|..++.+++|+.|+++-| .+..+|.+|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 456888899985 56678889999999999999997765 56788999999999999976 7888999999999999999
Q ss_pred eccccc-cccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCC
Q 035579 597 IFQCER-LEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCD 674 (814)
Q Consensus 597 l~~~~~-l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 674 (814)
+..|+. -..+|..|..+..|+.|++++ .++.+| ..++.+++|+.|.+.+|
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp---------------------------~dvg~lt~lqil~lrdn- 160 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP---------------------------PDVGKLTNLQILSLRDN- 160 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCC---------------------------hhhhhhcceeEEeeccC-
Confidence 999864 345788877777776666665 444443 33455666666666665
Q ss_pred CCCccCCccccccCCCCCCCCCcceEEeccCCCCccccccccc
Q 035579 675 DDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVD 717 (814)
Q Consensus 675 ~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 717 (814)
.+-++|.+.+ .+++|++|++.+ |.++-+|+.+++
T Consensus 161 -dll~lpkeig-------~lt~lrelhiqg-nrl~vlppel~~ 194 (264)
T KOG0617|consen 161 -DLLSLPKEIG-------DLTRLRELHIQG-NRLTVLPPELAN 194 (264)
T ss_pred -chhhCcHHHH-------HHHHHHHHhccc-ceeeecChhhhh
Confidence 5666666663 466777777777 677777754443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-12 Score=133.77 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=10.3
Q ss_pred hhhhcCCCCCeEEEecC
Q 035579 326 ELLQDICSLRRLTIRSC 342 (814)
Q Consensus 326 ~~~~~l~~L~~L~l~~~ 342 (814)
..+..+.+|++|++++|
T Consensus 17 ~~~~~l~~L~~l~l~~~ 33 (319)
T cd00116 17 ELLPKLLCLQVLRLEGN 33 (319)
T ss_pred HHHHHHhhccEEeecCC
Confidence 34455566666776665
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-12 Score=133.74 Aligned_cols=155 Identities=19% Similarity=0.148 Sum_probs=73.2
Q ss_pred cccEEEEeccCCc------chhhHhhcCCCCcceEeecccCCcccccccCCCCCC---ccEEEecCCCCce----ecCCC
Q 035579 519 TLESLSVYKCSKL------ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ---LREITIQRCGNLV----SFPEG 585 (814)
Q Consensus 519 ~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~---L~~L~l~~~~~l~----~~~~~ 585 (814)
+++.++++++... ..++..+..+++|+.|++++|.+....+..+..+.+ |++|++++|.... .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 3555555554332 233445556667777777776665444333333333 7777776663221 11112
Q ss_pred CCCC-CCcceEeeccccccc----cccccccCCCCcceEEecC-ccCc-----ccc-CCCCCceeEEEecCCcchhhhhh
Q 035579 586 GLPC-AKLSELRIFQCERLE----ALPKGLHNLTSLQELTIGG-ALPS-----LEE-DGLPTNLHSLDIRGNMEIWKSMI 653 (814)
Q Consensus 586 ~~~l-~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~-~~~~-----l~~-~~~~~~L~~L~l~~n~~~~~~~~ 653 (814)
+..+ ++|+.|++++|.... .++..+..+++|++|++++ .+.. +.. ....++|++|++++|........
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 2333 566777776664321 2233444555566666555 2221 110 11124556666665554332221
Q ss_pred hcccccCCCCcccEEEEecC
Q 035579 654 ERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 654 ~~~~~l~~l~~L~~L~l~~~ 673 (814)
..+..+..+++|++|++++|
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHhcccCCCCEEecCCC
Confidence 11133445555555555554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-10 Score=132.59 Aligned_cols=216 Identities=23% Similarity=0.236 Sum_probs=137.3
Q ss_pred CCCcccceeecCCCCccccccccCCCCCCCCccCceEEcCCCCCCccccccccCCCceEEEccccCCCChhhhHHhhccc
Q 035579 2 GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLHISKLENVTDIGDAKEAQLDV 81 (814)
Q Consensus 2 ~~l~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~ 81 (814)
..++.||+|||++|..+.+||.+|++|-+||+|+....+- ...|..+++|..|. .|++....... ..+.....
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk~L~-~Lnl~~~~~l~----~~~~i~~~ 640 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLKKLI-YLNLEVTGRLE----SIPGILLE 640 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHHhhh-eeccccccccc----cccchhhh
Confidence 4689999999999988999999999999999995544332 23566688888888 77776544332 22455666
Q ss_pred CCCcceeEEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeCCCCCCccccCCCCCccc----EEEEecCCCCC
Q 035579 82 KENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLV----TLKFKDCGVCT 157 (814)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~----~L~L~~~~~~~ 157 (814)
+++|++|.+.+.... .....++.+..+++|+.+.....+...+-+.. ....|+ .+.+.+|...+
T Consensus 641 L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~---~~~~L~~~~~~l~~~~~~~~~ 708 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALS---------NDKLLLKELENLEHLENLSITISSVLLLEDLL---GMTRLRSLLQSLSIEGCSKRT 708 (889)
T ss_pred cccccEEEeeccccc---------cchhhHHhhhcccchhhheeecchhHhHhhhh---hhHHHHHHhHhhhhcccccce
Confidence 999999999866522 22234556677888888887544331111111 233333 44444555566
Q ss_pred CCCCCCCCCccceeeecCCcCceeeCccccCCCCCC-CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCC
Q 035579 158 TLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI-PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCS 236 (814)
Q Consensus 158 ~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 236 (814)
....+..+.+|+.|.+.+|...+....-.... ... .|+++..+...+|........ ....|+|+.|.+.+|.
T Consensus 709 ~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~-~~~~~f~~l~~~~~~~~~~~r~l~~------~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 709 LISSLGSLGNLEELSILDCGISEIVIEWEESL-IVLLCFPNLSKVSILNCHMLRDLTW------LLFAPHLTSLSLVSCR 781 (889)
T ss_pred eecccccccCcceEEEEcCCCchhhccccccc-chhhhHHHHHHHHhhccccccccch------hhccCcccEEEEeccc
Confidence 66678999999999999886543322111110 011 155666666666655544332 2357899999999998
Q ss_pred CcccCCC
Q 035579 237 KLQGTFP 243 (814)
Q Consensus 237 ~l~~~lp 243 (814)
.+.+.+|
T Consensus 782 ~~e~~i~ 788 (889)
T KOG4658|consen 782 LLEDIIP 788 (889)
T ss_pred ccccCCC
Confidence 6664433
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-10 Score=114.72 Aligned_cols=277 Identities=20% Similarity=0.305 Sum_probs=127.1
Q ss_pred CCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccc--
Q 035579 303 LPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK-- 380 (814)
Q Consensus 303 ~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-- 380 (814)
.++++.|.+.+|...+. ....++-..+++|+.+++..|..++.. .++.+++-|++|++|++++|+.+..
T Consensus 163 CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~-------~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDV-------SLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred CCchhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHH-------HHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 34455555544442222 233334445556666666665555443 2333444455666666666554332
Q ss_pred cccccCCCCCcceEeeecCCCCcc--cCC-CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc
Q 035579 381 LPQSSLSLCSLREIGIYKCSSLVS--FPE-VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV 457 (814)
Q Consensus 381 ~~~~~~~l~~L~~L~L~~~~~l~~--~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 457 (814)
+...+..+..++.+.+.||...+. +-. -+....+.++++..|..+.+.........+..|+.|+.++|..+++.+..
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 112233344455554445433221 100 11233344444445544444332222234455555555555544443221
Q ss_pred ---cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccc-c-ccCCCcccccEEEEeccCCcc
Q 035579 458 ---QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCI-F-SKNELPATLESLSVYKCSKLE 532 (814)
Q Consensus 458 ---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~-~~~~~~~~L~~L~l~~~~~~~ 532 (814)
....+|+. +.+.+|..+++. + ......+.|+.+++.+|....
T Consensus 314 aLg~~~~~L~~---------------------------------l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 314 ALGQHCHNLQV---------------------------------LELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred HHhcCCCceEE---------------------------------EeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 22334444 444444433331 1 112223345666665554332
Q ss_pred h--hhHhhcCCCCcceEeecccCCcccc-----cccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeeccccccc
Q 035579 533 S--IAERLDNNTSLETIGINFCENLKIL-----PSGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 533 ~--~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~ 604 (814)
. +...-.+++.|+++.+++|..+... ...-..+..|+.+.+++|+.+.+-. .....+++|+.+++.+|....
T Consensus 361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 2 2333445666777777766655432 2222345667777777776554322 133456677777777775544
Q ss_pred ccc--ccccCCCCcceEEe
Q 035579 605 ALP--KGLHNLTSLQELTI 621 (814)
Q Consensus 605 ~lp--~~~~~l~~L~~L~l 621 (814)
.-+ ..-.++|++++..+
T Consensus 441 k~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 441 KEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhHHHHhhCccceehhh
Confidence 322 12245555554433
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-10 Score=115.75 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=57.7
Q ss_pred CcccEEEEecCCCCCCCC---CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCC
Q 035579 143 SNLVTLKFKDCGVCTTLP---SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQ 219 (814)
Q Consensus 143 ~~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 219 (814)
..|+.|.+.+|.-..+-+ ...++|++++|++.+|..+++....-.+.. +++|+.|++..|..++...-...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~----C~~l~~l~L~~c~~iT~~~Lk~l-- 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY----CRKLRHLNLHSCSSITDVSLKYL-- 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh----cchhhhhhhcccchhHHHHHHHH--
Confidence 457777777777555544 255677888888888776655443222222 67777777777776665443322
Q ss_pred CcccCCcccEEEEccCCCcc
Q 035579 220 GVEGFPKLRELHIISCSKLQ 239 (814)
Q Consensus 220 ~~~~l~~L~~L~l~~c~~l~ 239 (814)
...+++|++++++-|+.++
T Consensus 212 -a~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 212 -AEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred -HHhhhhHHHhhhccCchhh
Confidence 3457788888888887665
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-09 Score=121.67 Aligned_cols=226 Identities=24% Similarity=0.289 Sum_probs=149.9
Q ss_pred ccccEEEEeccC--CcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 518 ATLESLSVYKCS--KLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 518 ~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
+.|++|-+.++. ........|..++.|++||+++|...+.+|..++.+-+|+.|++++. .+..+|.++..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 468888888876 33334455888999999999999888999999999999999999986 778899999999999999
Q ss_pred eeccccccccccccccCCCCcceEEecC-c----cCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCccc----
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-A----LPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR---- 666 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~----~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~---- 666 (814)
++..+..+..+|.....+++|++|.+.. . ...+.+...+.+|+.+......... . ..+..++.|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~--~----e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLL--L----EDLLGMTRLRSLLQ 697 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHh--H----hhhhhhHHHHHHhH
Confidence 9998887777777777799999998876 2 1112223445666666665543311 0 1122333333
Q ss_pred EEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccc-----ccc-CCCCCeEEecCCCCCCccCCCCC
Q 035579 667 HLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSS-----IVD-LQNLTELCLRDCPKLKYFPEKGL 740 (814)
Q Consensus 667 ~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-----~~~-l~~L~~L~l~~c~~l~~lp~~~l 740 (814)
.+.+.++ ...+.+... ..+.+|+.|.+.+|...+....+ ... ++++..+.+.+|..++.+....+
T Consensus 698 ~l~~~~~--~~~~~~~~~-------~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f 768 (889)
T KOG4658|consen 698 SLSIEGC--SKRTLISSL-------GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF 768 (889)
T ss_pred hhhhccc--ccceeeccc-------ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc
Confidence 2222221 223333333 45778888888887654322111 111 55677777777777777666556
Q ss_pred cCCccEEeecCCchhhHhh
Q 035579 741 PSSLLRLSILSCPLIEEKC 759 (814)
Q Consensus 741 ~~~L~~L~i~~c~~l~~~~ 759 (814)
+++|+.|++.+|+.++...
T Consensus 769 ~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cCcccEEEEecccccccCC
Confidence 7888888888887665443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-08 Score=94.35 Aligned_cols=126 Identities=23% Similarity=0.338 Sum_probs=47.5
Q ss_pred CCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCCCC
Q 035579 114 LKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193 (814)
Q Consensus 114 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (814)
+.++.+++.|+|+|+.++.+.. ++. .+.+|+.|++++|. ++.++.+..+++|+.|++++| .++.++..+..
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~-L~~-~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~----- 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIEN-LGA-TLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNN-RISSISEGLDK----- 85 (175)
T ss_dssp ---------------------S---T-T-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHH-----
T ss_pred cccccccccccccccccccccc-hhh-hhcCCCEEECCCCC-CccccCccChhhhhhcccCCC-CCCccccchHH-----
Confidence 3345567888888888777653 321 47788889988888 556777888888999999874 56666432221
Q ss_pred CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCC-------CCCcccceee
Q 035579 194 PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPE-------HLPALEMLVI 254 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~-------~l~~L~~L~l 254 (814)
.+|+|++|++++ +++..+..... +..+++|++|++.+|+ +. ..+. .+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~-N~I~~l~~l~~---L~~l~~L~~L~L~~NP-v~-~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSN-NKISDLNELEP---LSSLPKLRVLSLEGNP-VC-EKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TT-S---SCCCCGG---GGG-TT--EEE-TT-G-GG-GSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcC-CcCCChHHhHH---HHcCCCcceeeccCCc-cc-chhhHHHHHHHHcChhheeCC
Confidence 178899999987 66666655444 6789999999999999 65 3342 5678888875
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-08 Score=93.98 Aligned_cols=127 Identities=23% Similarity=0.276 Sum_probs=44.3
Q ss_pred CCCCcceEeecccCCcccccccCC-CCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccc-cCCCCcc
Q 035579 540 NNTSLETIGINFCENLKILPSGLH-NLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGL-HNLTSLQ 617 (814)
Q Consensus 540 ~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~ 617 (814)
+...+++|+|.+|.+..+ ..++ .+.+|+.|++++| .++.++ ++..++.|++|++++| .++.++..+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 344556666666666543 2343 4566777777776 555554 4555667777777776 455554333 3467777
Q ss_pred eEEecC-ccCcc---ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 618 ELTIGG-ALPSL---EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 618 ~L~l~~-~~~~l---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
+|++++ .+..+ .....+++|++|++.+|+....... ....+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH-HHHHHHHcChhheeCCEE
Confidence 777776 44333 3334578899999999987654221 123567788888887665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-09 Score=105.27 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=107.8
Q ss_pred hhcCCCCcceEeecccCCccc--ccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccc-cccccccC
Q 035579 537 RLDNNTSLETIGINFCENLKI--LPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLE-ALPKGLHN 612 (814)
Q Consensus 537 ~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~-~lp~~~~~ 612 (814)
....+++++.|||+.|-+... +-.....+++|+.|+++.|...--... .-..+++|+.|.+++|.... .+......
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 345566666666666654432 222334566677777766632221111 11234567777777774321 12223346
Q ss_pred CCCcceEEecCc-cCcc--ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCC
Q 035579 613 LTSLQELTIGGA-LPSL--EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGT 689 (814)
Q Consensus 613 l~~L~~L~l~~~-~~~l--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~ 689 (814)
+|+|+.|++.++ .... .....+..|++|+|++|+.+..... .....++.|+.|.++.| .+.++..-..+...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~t--gi~si~~~d~~s~~ 295 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSST--GIASIAEPDVESLD 295 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccchhhhhcccc--CcchhcCCCccchh
Confidence 677777777662 1111 1133467888899998887765432 35678888888998887 44443222211111
Q ss_pred CCCCCCCcceEEeccCCCCccccc--ccccCCCCCeEEecC
Q 035579 690 ALPLPASLTDLEIGRFPNLERLSS--SIVDLQNLTELCLRD 728 (814)
Q Consensus 690 ~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~ 728 (814)
....+++|+.|++.. |++...+. .+..+++|+.|.+..
T Consensus 296 kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 296 KTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 224589999999999 77776664 566777888887655
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-09 Score=111.44 Aligned_cols=190 Identities=20% Similarity=0.250 Sum_probs=129.9
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecc
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 599 (814)
-...+++.| ...++|..++.+..|+.+.+..|.+. .+|..+.++..|+.++++.| .+..+|..+..+ -|+.|-+++
T Consensus 77 t~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRN-RFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSN 152 (722)
T ss_pred hhhhhcccc-ccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEec
Confidence 344566664 45567777888888888888887665 44567888888889999887 677788877777 488888887
Q ss_pred ccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc
Q 035579 600 CERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS 679 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~ 679 (814)
| +++.+|..++.++.|..||. +.|.+.... ..+..+.+|+.|.+..| .+..
T Consensus 153 N-kl~~lp~~ig~~~tl~~ld~---------------------s~nei~slp-----sql~~l~slr~l~vrRn--~l~~ 203 (722)
T KOG0532|consen 153 N-KLTSLPEEIGLLPTLAHLDV---------------------SKNEIQSLP-----SQLGYLTSLRDLNVRRN--HLED 203 (722)
T ss_pred C-ccccCCcccccchhHHHhhh---------------------hhhhhhhch-----HHhhhHHHHHHHHHhhh--hhhh
Confidence 7 78888877765555555554 444443332 23566677777777766 6777
Q ss_pred CCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCC----CCcCCccEEeecCC
Q 035579 680 FPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEK----GLPSSLLRLSILSC 752 (814)
Q Consensus 680 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~----~l~~~L~~L~i~~c 752 (814)
+|.+.. --.|..||++. |++..||..+.+|+.|++|.|.++ =|++-|+. +.-.-.++|++.-|
T Consensus 204 lp~El~--------~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 204 LPEELC--------SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCHHHh--------CCceeeeeccc-CceeecchhhhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence 777662 34577777776 778888887788888888888764 36665542 22334566666666
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-07 Score=91.59 Aligned_cols=165 Identities=24% Similarity=0.424 Sum_probs=89.3
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
+..+.+++.|++++|.+. .+|. -.++|++|.+++|..+..+|..+. ++|++|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 444577777777777333 3341 123578888887777777775442 4778888887766655552 344
Q ss_pred eEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC-CccCCccccccCCCCCCCC
Q 035579 618 ELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD-MVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 618 ~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-l~~i~~~~~~~~~~~~~~~ 695 (814)
.|++.+ ....++ ..+++ |+.|.+.+++.. ...+|. ..++
T Consensus 116 ~L~L~~n~~~~L~--~LPss----------------------------Lk~L~I~~~n~~~~~~lp~---------~LPs 156 (426)
T PRK15386 116 SLEIKGSATDSIK--NVPNG----------------------------LTSLSINSYNPENQARIDN---------LISP 156 (426)
T ss_pred eEEeCCCCCcccc--cCcch----------------------------Hhheecccccccccccccc---------ccCC
Confidence 444443 211111 12233 444444322111 111121 2356
Q ss_pred CcceEEeccCCCCcccccccccCCCCCeEEecCCCC-CCccCCCCCcCCccEEeecCCchhhH
Q 035579 696 SLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPK-LKYFPEKGLPSSLLRLSILSCPLIEE 757 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~-l~~lp~~~l~~~L~~L~i~~c~~l~~ 757 (814)
+|++|++++|..+ .+|..+. .+|+.|+++.+.. -..++...+|+++ .|++.+|..+..
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 7777777776544 3443333 5788888876421 1234444567777 888888765543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-08 Score=103.36 Aligned_cols=167 Identities=18% Similarity=0.150 Sum_probs=84.9
Q ss_pred cccccCCCceEEEccccCCCChhhhHHhhcccCCCcceeEEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeC
Q 035579 50 LKLLTYLRGTLHISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYG 129 (814)
Q Consensus 50 l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 129 (814)
...+++++ .|+++.. -.+ -.........++++|+.|+++.|.... +|.+.... .+++|+.|.+++|+
T Consensus 142 ~k~~~~v~-~LdLS~N-L~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~---~~~s~~~~-------~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 142 SKILPNVR-DLDLSRN-LFH-NWFPVLKIAEQLPSLENLNLSSNRLSN---FISSNTTL-------LLSHLKQLVLNSCG 208 (505)
T ss_pred hhhCCcce-eecchhh-hHH-hHHHHHHHHHhcccchhcccccccccC---Cccccchh-------hhhhhheEEeccCC
Confidence 44555555 5555421 111 122333456667777777777665432 22221111 35667777777765
Q ss_pred CCCC-CccccCCCCCcccEEEEecCCCCCC-CCCCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccc
Q 035579 130 GTKF-PTWLGDCSFSNLVTLKFKDCGVCTT-LPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQ 207 (814)
Q Consensus 130 ~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 207 (814)
++.= -.|+.. .|++|+.|+|..|..+.. .-...-+..|+.|||++|+.+....... ...|+.|+.|+++. +
T Consensus 209 ls~k~V~~~~~-~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~-----~~~l~~L~~Lnls~-t 281 (505)
T KOG3207|consen 209 LSWKDVQWILL-TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK-----VGTLPGLNQLNLSS-T 281 (505)
T ss_pred CCHHHHHHHHH-hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc-----cccccchhhhhccc-c
Confidence 4410 011111 567777777777642221 1134456667777777765443322111 22377777777766 3
Q ss_pred cccccccCCCC--CCcccCCcccEEEEccCC
Q 035579 208 EWEDWIPLRSD--QGVEGFPKLRELHIISCS 236 (814)
Q Consensus 208 ~l~~~~~~~~~--~~~~~l~~L~~L~l~~c~ 236 (814)
.+..+...+.. .-...+++|++|++..|+
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCc
Confidence 34443322210 002357888888888887
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-08 Score=96.51 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=21.6
Q ss_pred hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecC
Q 035579 535 AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQR 575 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 575 (814)
|-.+..+.+|+.+.++.|.-..+. .-...-|.|+++.+..
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~ 246 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHN 246 (490)
T ss_pred ccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeec
Confidence 434555677777777777544321 1112235666666654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-07 Score=102.26 Aligned_cols=178 Identities=24% Similarity=0.304 Sum_probs=127.9
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCC-CccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLR-QLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSL 616 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L 616 (814)
+...+.++.+++.+|.+.... ....... +|+.|++++| .+..+|..+..++.|+.|++++| .+..+|...+..+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccccCc-cccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 444467778888777666543 3344453 7888888887 66777666777888888888888 677777665577888
Q ss_pred ceEEecC-ccCccccC-CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCC
Q 035579 617 QELTIGG-ALPSLEED-GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLP 694 (814)
Q Consensus 617 ~~L~l~~-~~~~l~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~ 694 (814)
+.|++++ .+..++.. ..+..|+++.+++|...... ..+..+.++..+.+.+| .+..++... ..+
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n--~~~~~~~~~-------~~l 254 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNN--KLEDLPESI-------GNL 254 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCc--eeeeccchh-------ccc
Confidence 8888888 77777764 45566889999988633332 34677778888887776 555545544 467
Q ss_pred CCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCcc
Q 035579 695 ASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 735 (814)
++++.|++++ +.+..++. +..+.+|+.|++++. .+..+
T Consensus 255 ~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n-~~~~~ 292 (394)
T COG4886 255 SNLETLDLSN-NQISSISS-LGSLTNLRELDLSGN-SLSNA 292 (394)
T ss_pred cccceecccc-cccccccc-ccccCccCEEeccCc-ccccc
Confidence 7899999998 78888885 888889999999884 44443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.5e-08 Score=92.27 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=55.6
Q ss_pred CCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEec
Q 035579 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIR 643 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~ 643 (814)
.|+++.|++++| .+..+.. +..+++|+.||+++| .+..+..+-..+.+.+.|.+++ .++++...+.+.+|..||++
T Consensus 306 ~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 306 APKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLS 382 (490)
T ss_pred ccceeEEecccc-ceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence 444444444444 2232322 333444555555444 3444434444444555555554 44444444445566666666
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCc
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP 682 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~ 682 (814)
+|++-...-. ..++++|.|+.+.+.+| .+..+++
T Consensus 383 ~N~Ie~ldeV---~~IG~LPCLE~l~L~~N--Pl~~~vd 416 (490)
T KOG1259|consen 383 SNQIEELDEV---NHIGNLPCLETLRLTGN--PLAGSVD 416 (490)
T ss_pred ccchhhHHHh---cccccccHHHHHhhcCC--Cccccch
Confidence 6654433221 45677777777777775 5555554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-07 Score=100.71 Aligned_cols=189 Identities=24% Similarity=0.294 Sum_probs=149.2
Q ss_pred eEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCC-CcceEeeccccccccccccccCCCCcceEEecC-
Q 035579 546 TIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCA-KLSELRIFQCERLEALPKGLHNLTSLQELTIGG- 623 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~- 623 (814)
.+....+...... ..+..++.++.|++.++ .+..++....... +|+.|++++| .+..+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCc-ccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence 4666666553332 33555688999999987 7788887777774 9999999998 7888877889999999999999
Q ss_pred ccCccccCC-CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEe
Q 035579 624 ALPSLEEDG-LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEI 702 (814)
Q Consensus 624 ~~~~l~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l 702 (814)
.+..++... ..++|+.|++++|....... .......|+++.+++| ....++... ..+.++..+.+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~-----~~~~~~~L~~l~~~~N--~~~~~~~~~-------~~~~~l~~l~l 239 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPP-----EIELLSALEELDLSNN--SIIELLSSL-------SNLKNLSGLEL 239 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCch-----hhhhhhhhhhhhhcCC--cceecchhh-------hhccccccccc
Confidence 888887754 78999999999998877643 2235556999999996 345555544 46788888887
Q ss_pred ccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 703 GRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 703 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
.+ +++..++..+..+++++.|++++ +.+.+++..+-..+++.+++.+..
T Consensus 240 ~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 240 SN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred CC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCcc
Confidence 77 78888788889999999999999 589999884447899999999854
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-06 Score=87.44 Aligned_cols=73 Identities=23% Similarity=0.497 Sum_probs=40.2
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCC
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEV 408 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 408 (814)
..+.+++.|++++| .++.+|. +|++|++|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~------------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV------------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC------------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--
Confidence 34566666677666 5555542 23556666666666555555433 2456666666655444332
Q ss_pred CCCCCCcEEEecc
Q 035579 409 ALPSKLEKIHIGA 421 (814)
Q Consensus 409 ~~~~~L~~L~l~~ 421 (814)
++|+.|++..
T Consensus 112 ---~sLe~L~L~~ 121 (426)
T PRK15386 112 ---ESVRSLEIKG 121 (426)
T ss_pred ---cccceEEeCC
Confidence 3455555544
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.7e-08 Score=103.68 Aligned_cols=170 Identities=22% Similarity=0.289 Sum_probs=127.4
Q ss_pred CCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEec
Q 035579 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIR 643 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~ 643 (814)
++.-...+++.| .+..+|..+..+..|+.+.+..| .+..+|..+.++..|..+|++. .+..+|..-+.--|+.|-++
T Consensus 74 ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred ccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence 333345556665 45566666666666666666666 5666666666666777777766 56665553334568889999
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCe
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTE 723 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 723 (814)
+|++...+ ..++..+.|..|+.+.| .+.++|... ..+.+|+.|.++. |.+..+|+.+. .-.|..
T Consensus 152 NNkl~~lp-----~~ig~~~tl~~ld~s~n--ei~slpsql-------~~l~slr~l~vrR-n~l~~lp~El~-~LpLi~ 215 (722)
T KOG0532|consen 152 NNKLTSLP-----EEIGLLPTLAHLDVSKN--EIQSLPSQL-------GYLTSLRDLNVRR-NHLEDLPEELC-SLPLIR 215 (722)
T ss_pred cCccccCC-----cccccchhHHHhhhhhh--hhhhchHHh-------hhHHHHHHHHHhh-hhhhhCCHHHh-CCceee
Confidence 98876654 45668899999999998 999999988 4789999999999 89999999887 446999
Q ss_pred EEecCCCCCCccCCCCC-cCCccEEeecCCc
Q 035579 724 LCLRDCPKLKYFPEKGL-PSSLLRLSILSCP 753 (814)
Q Consensus 724 L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~ 753 (814)
||++. +++.+||...- ++.|++|-+.++|
T Consensus 216 lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 216 LDFSC-NKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeccc-CceeecchhhhhhhhheeeeeccCC
Confidence 99976 89999998532 7899999999987
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.3e-08 Score=93.94 Aligned_cols=152 Identities=17% Similarity=0.262 Sum_probs=82.5
Q ss_pred cccEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC--CCCCCCCcceE
Q 035579 519 TLESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE--GGLPCAKLSEL 595 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L 595 (814)
.++.+|+++...... +-..+..+.+|+.|.+.++.....+...+..-.+|+.|+++.|..+++... -+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666444322 344566677777777777777766666677777788888877766654432 24567777777
Q ss_pred eeccccccccccc-ccc-CCCCcceEEecC---c--cCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccE
Q 035579 596 RIFQCERLEALPK-GLH-NLTSLQELTIGG---A--LPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRH 667 (814)
Q Consensus 596 ~l~~~~~l~~lp~-~~~-~l~~L~~L~l~~---~--~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~ 667 (814)
+++.|...+.... .+. --++|+.|+++| + ...+.. ...+|+|.+||+++|..++.... ..|..++.|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~---~~~~kf~~L~~ 342 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF---QEFFKFNYLQH 342 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH---HHHHhcchhee
Confidence 7777754333211 111 113555555655 1 111111 12245555555555544433222 23445555555
Q ss_pred EEEecC
Q 035579 668 LTIDGC 673 (814)
Q Consensus 668 L~l~~~ 673 (814)
|.++.|
T Consensus 343 lSlsRC 348 (419)
T KOG2120|consen 343 LSLSRC 348 (419)
T ss_pred eehhhh
Confidence 555554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-07 Score=91.18 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=13.1
Q ss_pred EEEcCCCCcchhccchhhhhhcCCCCCeEEEec
Q 035579 309 LKINDMKEQTYMWKSHNELLQDICSLRRLTIRS 341 (814)
Q Consensus 309 L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 341 (814)
|+.+|+++-.+........+..+.+|+.|++.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg 219 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG 219 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccc
Confidence 344444433332222333334444444444444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-07 Score=89.44 Aligned_cols=189 Identities=18% Similarity=0.194 Sum_probs=109.5
Q ss_pred HhhcCCCCcceEeecccCCccccc----ccCCCCCCccEEEecCCCCceecC--------------CCCCCCCCcceEee
Q 035579 536 ERLDNNTSLETIGINFCENLKILP----SGLHNLRQLREITIQRCGNLVSFP--------------EGGLPCAKLSELRI 597 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~~~--------------~~~~~l~~L~~L~l 597 (814)
..+..++.|++++||+|-+...-+ .-+.++..|++|+|.+|. +.... ..+..-+.|+++..
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 345555666667776665543222 223456677777777762 22111 11233467888887
Q ss_pred ccccccccccc-----cccCCCCcceEEecC-ccCc--c---c-cCCCCCceeEEEecCCcchhhhhhhcccccCCCCcc
Q 035579 598 FQCERLEALPK-----GLHNLTSLQELTIGG-ALPS--L---E-EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSL 665 (814)
Q Consensus 598 ~~~~~l~~lp~-----~~~~l~~L~~L~l~~-~~~~--l---~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L 665 (814)
++| .+..-+. .+...+.|+.+.+.. +|.. + . ....+++|+.|++.+|.............++.|++|
T Consensus 165 ~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 165 GRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 777 4444332 455667778777766 2221 1 1 133478888888888877665444334568888889
Q ss_pred cEEEEecCCCCCccCCcc-ccccCCCCCCCCCcceEEeccCCCCcc-----cccccccCCCCCeEEecCCCCC
Q 035579 666 RHLTIDGCDDDMVSFPPE-DKRLGTALPLPASLTDLEIGRFPNLER-----LSSSIVDLQNLTELCLRDCPKL 732 (814)
Q Consensus 666 ~~L~l~~~~~~l~~i~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l 732 (814)
++|++++| .++.=-.. ..+.. ....|+|+.|.+.+ |.++. +...+...+.|+.|++++| .+
T Consensus 244 ~El~l~dc--ll~~~Ga~a~~~al--~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 244 RELNLGDC--LLENEGAIAFVDAL--KESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred eeeccccc--ccccccHHHHHHHH--hccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence 99999887 33221100 00000 02367888888888 55552 2224455788888888885 44
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.2e-06 Score=96.32 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=78.5
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888888888888999999999999998888888888889999999999887767788888888899999999
Q ss_pred ccccccccccccc
Q 035579 599 QCERLEALPKGLH 611 (814)
Q Consensus 599 ~~~~l~~lp~~~~ 611 (814)
+|...+.+|..+.
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 8877777776654
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-06 Score=63.73 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=32.0
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccc
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQC 600 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~ 600 (814)
+|++|++++|.+....+..+..+++|++|++++| .++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555555444455566666666666655 3344433 4555666666666665
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.3e-06 Score=61.80 Aligned_cols=58 Identities=26% Similarity=0.319 Sum_probs=37.6
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCC
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRC 576 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~ 576 (814)
+|++|++++|.....-+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5666777766444333456666777777777776666666666677777777777666
|
... |
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.2e-07 Score=89.61 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=55.3
Q ss_pred CcccccEEEEeccCCcch----hhHhhcCCCCcceEeecccCCcc----ccc-------ccCCCCCCccEEEecCCCCce
Q 035579 516 LPATLESLSVYKCSKLES----IAERLDNNTSLETIGINFCENLK----ILP-------SGLHNLRQLREITIQRCGNLV 580 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~-------~~~~~l~~L~~L~l~~~~~l~ 580 (814)
-..+++.+++++|..-.. +...+.+.++|+..++++- .++ .+| .++..+++|++++||+|..-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 345688889998876543 4556777888888888763 222 222 344567788999998884322
Q ss_pred ecCC----CCCCCCCcceEeecccc
Q 035579 581 SFPE----GGLPCAKLSELRIFQCE 601 (814)
Q Consensus 581 ~~~~----~~~~l~~L~~L~l~~~~ 601 (814)
.-+. -+.++..|+.|++.+|.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC
Confidence 2222 24457888888888883
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.7e-06 Score=94.14 Aligned_cols=124 Identities=26% Similarity=0.374 Sum_probs=53.2
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
.+++.|++.+|.. ..+...+..+++|++|++++|.+... ..+..++.|+.|++++| .+..+. .+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccch-hhcccchhhhhcchheeccccccccc--cchhhccchhhheeccC-cchhcc-CCccchhhhcccC
Confidence 3455555555322 22222244455555555555555544 23444444555555554 333332 2233445555555
Q ss_pred cccccccccccc-ccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcc
Q 035579 598 FQCERLEALPKG-LHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 598 ~~~~~l~~lp~~-~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
++| .+..+... ...+.+++.+++++ .+..+........+..+++..|.+
T Consensus 170 ~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 170 SYN-RIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred Ccc-hhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccc
Confidence 555 23323221 23444555555554 333333222233333334444433
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.7e-05 Score=90.61 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=91.2
Q ss_pred ccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecC
Q 035579 496 LEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQR 575 (814)
Q Consensus 496 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 575 (814)
++.|+++++..-..+......+++|+.|++++|...+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788877665444333344567899999999998889999999999999999999999999999999999999999999
Q ss_pred CCCceecCCCCCC-CCCcceEeecccccccccc
Q 035579 576 CGNLVSFPEGGLP-CAKLSELRIFQCERLEALP 607 (814)
Q Consensus 576 ~~~l~~~~~~~~~-l~~L~~L~l~~~~~l~~lp 607 (814)
|.....+|..+.. ..++..+++.+|..+...|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9877788876654 2467788888886554443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.3e-06 Score=93.17 Aligned_cols=167 Identities=19% Similarity=0.161 Sum_probs=81.4
Q ss_pred CCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEe
Q 035579 494 SILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITI 573 (814)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 573 (814)
.+++.+++.+...... .......++|++|++++|.+...-+ +..++.|+.|++.+|.+... ..+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 4566666655332221 2213344566666666654444333 44555566666666666544 34444666666666
Q ss_pred cCCCCceecCCC-CCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCc--eeEEEecCCcchh
Q 035579 574 QRCGNLVSFPEG-GLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTN--LHSLDIRGNMEIW 649 (814)
Q Consensus 574 ~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~--L~~L~l~~n~~~~ 649 (814)
++| .+..+... ...+.+++.+++.+|. +..+ .++..+..+..+++.. .+..+........ |+.+++++|+...
T Consensus 170 ~~n-~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i-~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 170 SYN-RIVDIENDELSELISLEELDLGGNS-IREI-EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred Ccc-hhhhhhhhhhhhccchHHHhccCCc-hhcc-cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc
Confidence 666 33333321 2445566666666652 2222 1222333333334443 3333332222233 5666666665544
Q ss_pred hhhhhcccccCCCCcccEEEEecC
Q 035579 650 KSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 650 ~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
.. ..+..+..+..|++.++
T Consensus 247 ~~-----~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 247 SP-----EGLENLKNLPVLDLSSN 265 (414)
T ss_pred cc-----ccccccccccccchhhc
Confidence 31 23445556666666554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.9e-07 Score=95.56 Aligned_cols=195 Identities=22% Similarity=0.204 Sum_probs=121.7
Q ss_pred hcCCCCcceEeecccCCcccc-cccCCCCCCccEEEecCCCCceecCCCCCCC-CCcceEeecccccccccccc------
Q 035579 538 LDNNTSLETIGINFCENLKIL-PSGLHNLRQLREITIQRCGNLVSFPEGGLPC-AKLSELRIFQCERLEALPKG------ 609 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~l~~~~~l~~lp~~------ 609 (814)
+.-+++++.+.+-.-...+.. |-.+..+.+|++|.+.+|+.-. .- ++..+ ..|++|.-++ .+..+...
T Consensus 80 ~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC~~--Sl~Al~~v~ascgg 155 (1096)
T KOG1859|consen 80 LDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLICHN--SLDALRHVFASCGG 155 (1096)
T ss_pred HHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhhhc--cHHHHHHHHHHhcc
Confidence 334455555555444433322 4456667788888888874332 11 11111 2344442211 11111100
Q ss_pred -cc---CCCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcc
Q 035579 610 -LH---NLTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPE 683 (814)
Q Consensus 610 -~~---~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~ 683 (814)
+. ....|...+.+. .+..++. ..+++.|+.|+|+.|+..+. ..+..++.|++|||++| .+..+|.-
T Consensus 156 d~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN--~L~~vp~l 227 (1096)
T KOG1859|consen 156 DISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYN--CLRHVPQL 227 (1096)
T ss_pred ccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccc--hhcccccc
Confidence 00 112344444444 4444443 45578999999999988776 34778999999999998 67777765
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCC---CCcCCccEEeecCCch
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEK---GLPSSLLRLSILSCPL 754 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~---~l~~~L~~L~i~~c~~ 754 (814)
. ..--.|..|.+++ |.++++- ++.++.+|+.||+++ |-|....+- +.+.+|++|++.|+|-
T Consensus 228 ~-------~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 228 S-------MVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred c-------hhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4 1223499999999 8999887 788999999999999 556555442 2267899999999884
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.9e-05 Score=74.14 Aligned_cols=88 Identities=9% Similarity=-0.055 Sum_probs=61.0
Q ss_pred hhccccccEEEeeccCCcc--ccccccCCCCCcceEeeecCCCCcccCCC-CCCCCCcEEEecccCCCCCCchhhhcCCC
Q 035579 361 CELSCRLEYLILSCCEGLV--KLPQSSLSLCSLREIGIYKCSSLVSFPEV-ALPSKLEKIHIGACDALKSLPEAWMCDTN 437 (814)
Q Consensus 361 ~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 437 (814)
+..++.++.+||.+|.+.. ++...+.++|.|++|+|+.|+.-..+... ....+|+.|.+.+...-..-...+. ..+
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~l 145 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDL 145 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcc
Confidence 3345889999999998754 34455678999999999987654545444 3467899999988873222222222 677
Q ss_pred CCccEEEEecCC
Q 035579 438 SSLEILYIEGCR 449 (814)
Q Consensus 438 ~~L~~L~l~~~~ 449 (814)
|.+++|.++.|+
T Consensus 146 P~vtelHmS~N~ 157 (418)
T KOG2982|consen 146 PKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhccch
Confidence 888888888864
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=1.4e-06 Score=93.74 Aligned_cols=122 Identities=25% Similarity=0.295 Sum_probs=87.7
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 598 (814)
|.+.+.++ +.+..+...+.-++.++.|+|++|++... +.+..+++|++|||++| .++.+|.- ...+ .|..|.++
T Consensus 166 L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred Hhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhccccccchhhh-hheeeeec
Confidence 44444444 34445555677778888899999888765 36788899999999987 67777753 2334 49999998
Q ss_pred cccccccccccccCCCCcceEEecC----ccCccccCCCCCceeEEEecCCcch
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG----ALPSLEEDGLPTNLHSLDIRGNMEI 648 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~----~~~~l~~~~~~~~L~~L~l~~n~~~ 648 (814)
+| -++.+ .++.++.+|+.||+++ +...+...+.+..|+.|.|.+|++-
T Consensus 241 nN-~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NN-ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cc-HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88 56655 4677889999999988 3344444556688999999999753
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00017 Score=49.58 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=31.7
Q ss_pred CCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 695 ASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
++|++|++++ ++++.+|+.+.++++|+.|++++| .++++++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4688888888 788888877889999999999985 6777654
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0003 Score=64.53 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=81.7
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
..+...+++++|.+... ..|..++.|.+|.+++| .+..|..... ..++.|..|.+.+ |.+.++..
T Consensus 41 ~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nN--rIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~d 105 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNN--RITRIDPDLD------TFLPNLKTLILTN-NSIQELGD 105 (233)
T ss_pred ccccceecccccchhhc------ccCCCccccceEEecCC--cceeeccchh------hhccccceEEecC-cchhhhhh
Confidence 45677889999987665 56788999999999987 8888887765 5688999999999 88888765
Q ss_pred --ccccCCCCCeEEecCCCCCCccCCCC-----CcCCccEEeecCCc
Q 035579 714 --SIVDLQNLTELCLRDCPKLKYFPEKG-----LPSSLLRLSILSCP 753 (814)
Q Consensus 714 --~~~~l~~L~~L~l~~c~~l~~lp~~~-----l~~~L~~L~i~~c~ 753 (814)
.+..+|+|++|.+-++| +..-..-. .+++|+.||+.+-.
T Consensus 106 l~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 106 LDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 67889999999998854 44433321 17899999998864
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00018 Score=49.43 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=29.5
Q ss_pred cccceeecCCCCccccccccCCCCCCCCccCceEEcCCCCC
Q 035579 5 IKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGS 45 (814)
Q Consensus 5 ~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~~ 45 (814)
++||+|++++|. ++.+|++|++|++|++| ++++....
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L---~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETL---NLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEE---EETSSCCS
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEE---EecCCCCC
Confidence 589999999999 99999989999999999 66655433
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00045 Score=67.05 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=82.6
Q ss_pred CCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccc-ccccccccCCCCcc
Q 035579 541 NTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERL-EALPKGLHNLTSLQ 617 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l-~~lp~~~~~l~~L~ 617 (814)
.+.++.+||.+|.+.. ++..-+.++|.|+.|+++.|+.-..+...-.+..+|++|.+.+-... +.....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4455555666555542 23333445566666666555322211111123445555555443210 11122334444555
Q ss_pred eEEecC-ccCcccc-----CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCC
Q 035579 618 ELTIGG-ALPSLEE-----DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTAL 691 (814)
Q Consensus 618 ~L~l~~-~~~~l~~-----~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~ 691 (814)
.|.++. ++..+.. ...-+.+++|+...|......... ..-..+|++..+.+..| .+.+...+-+ .
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~--PlK~~s~ek~-----s 220 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEG--PLKTESSEKG-----S 220 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecC--cccchhhccc-----C
Confidence 554443 1211110 111245555555555433221111 22334566666666664 3333322221 1
Q ss_pred CCCCCcceEEeccCCCCccccc--ccccCCCCCeEEecCCCCCCcc
Q 035579 692 PLPASLTDLEIGRFPNLERLSS--SIVDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 692 ~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l 735 (814)
..++.+-.|+++. +++.+..+ .+..++.|..|.+.+.|-...+
T Consensus 221 e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 221 EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 2345555666666 55554433 5566667777766666544444
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=2.6e-05 Score=87.67 Aligned_cols=193 Identities=24% Similarity=0.337 Sum_probs=93.5
Q ss_pred hcCCCCcceEeecccCCccc-ccccC-CCCCCccEEEecCCCCcee--cCCCCCCCCCcceEeecccccccc--cccccc
Q 035579 538 LDNNTSLETIGINFCENLKI-LPSGL-HNLRQLREITIQRCGNLVS--FPEGGLPCAKLSELRIFQCERLEA--LPKGLH 611 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~-~~~~~-~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~--lp~~~~ 611 (814)
...+.+|+.++++++....+ .-..+ ..+++|++|.+.+|..++. +-.....+++|++|++++|..++. +.....
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 34455666666666653221 11111 2256677777666643221 111233456677777777655422 222233
Q ss_pred CCCCcceEEecCccCccccCCCCCceeEEEecCCcchh-hhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCC
Q 035579 612 NLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIW-KSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTA 690 (814)
Q Consensus 612 ~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~ 690 (814)
++++|+.+.+.. ...++.++.+.+..+.... +.... .....++.++.+.+..+.
T Consensus 319 ~c~~l~~l~~~~-------~~~c~~l~~~~l~~~~~~~~d~~~~--~~~~~~~~l~~~~l~~~~---------------- 373 (482)
T KOG1947|consen 319 NCPNLRELKLLS-------LNGCPSLTDLSLSGLLTLTSDDLAE--LILRSCPKLTDLSLSYCG---------------- 373 (482)
T ss_pred hCcchhhhhhhh-------cCCCccHHHHHHHHhhccCchhHhH--HHHhcCCCcchhhhhhhh----------------
Confidence 455555544332 0002334444444433321 01111 335566677777776641
Q ss_pred CCCCCCcc-eEEeccCCCC-cccccccccCCCCCeEEecCCCCCCccCCCCC---cCCccEEeecCCchhhHh
Q 035579 691 LPLPASLT-DLEIGRFPNL-ERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL---PSSLLRLSILSCPLIEEK 758 (814)
Q Consensus 691 ~~~~~~L~-~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L~~L~i~~c~~l~~~ 758 (814)
..... .+.+.+|+.+ ..+..-......++.|+++.|...+.-.-... ...++.+++.+|+.+...
T Consensus 374 ---~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 374 ---ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ---ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 11111 4556666666 33333333344488888888865544322111 456777888888766544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=8.5e-05 Score=84.49 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=50.3
Q ss_pred CcCcccEEEeeeCCC--CCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeC-ccccCCCCCC
Q 035579 117 HKNLEQFGICGYGGT--KFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLG-SEFYGNDSPI 193 (814)
Q Consensus 117 ~~~L~~L~l~~~~~~--~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~ 193 (814)
+|.|++|.+++-... .+... + .+|++|..||+|++. ++.+..++++++|+.|.+.+..--.... .+. -
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~l-c-~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L------F 217 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQL-C-ASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDL------F 217 (699)
T ss_pred CcccceEEecCceecchhHHHH-h-hccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHH------h
Confidence 566666666543211 11111 1 156666666666665 4445556666666666665422111000 011 1
Q ss_pred CCCCcceeecccccccccc-ccCCC-CCCcccCCcccEEEEccCC
Q 035579 194 PFPCLETLRFENMQEWEDW-IPLRS-DQGVEGFPKLRELHIISCS 236 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~-~~~~~-~~~~~~l~~L~~L~l~~c~ 236 (814)
.+.+|+.||++.-.+.... ....+ +- -..+|+|+.|+.++..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLPELRFLDCSGTD 261 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHh-cccCccccEEecCCcc
Confidence 2566666666652222211 00000 00 1237777777777654
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00019 Score=80.60 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=71.6
Q ss_pred hhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeecc-CCccccc----cccCCCCCcceEeeecCCCC
Q 035579 328 LQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCC-EGLVKLP----QSSLSLCSLREIGIYKCSSL 402 (814)
Q Consensus 328 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-~~~~~~~----~~~~~l~~L~~L~L~~~~~l 402 (814)
...++.|+.+.+.+|..+.... +..++..+++|+.|++++| ......+ .....+++|+.|++++|..+
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HhhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 3457888888888887766532 1222233478888888873 2222222 23344678888888887655
Q ss_pred cccC--CCC-CCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcc
Q 035579 403 VSFP--EVA-LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTY 453 (814)
Q Consensus 403 ~~~~--~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 453 (814)
++.. .++ .+++|+.|.+.+|..+....-......++.|++|++++|..+++
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 5433 122 26788888877777543322222226677888888888876643
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00058 Score=77.85 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=73.5
Q ss_pred eEEEcCCCCcchhcc-chhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccC
Q 035579 308 ELKINDMKEQTYMWK-SHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSL 386 (814)
Q Consensus 308 ~L~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~ 386 (814)
+|+.+|+++.+.... .+......+|+|+.|.+.+- .+.. . .+..+...||+|..||+|++.+... .+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~---~----dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDN---D----DFSQLCASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecc---h----hHHHHhhccCccceeecCCCCccCc--HHHh
Confidence 444445554443222 22333456788888888773 2211 1 1334444458888888888775332 4577
Q ss_pred CCCCcceEeeecCCCCc--ccCCCCCCCCCcEEEecccCCCCCC--chhhh--cCCCCCccEEEEecCC
Q 035579 387 SLCSLREIGIYKCSSLV--SFPEVALPSKLEKIHIGACDALKSL--PEAWM--CDTNSSLEILYIEGCR 449 (814)
Q Consensus 387 ~l~~L~~L~L~~~~~l~--~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~--~~~l~~L~~L~l~~~~ 449 (814)
.+++|+.|.+.+..... .+-++..+++|+.||+|.......- ...+. ...+|+|+.||.++..
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 78888888777643321 1224556788888888876633321 11110 1447777777777643
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0014 Score=60.30 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=63.9
Q ss_pred hhcCCCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCC--CCCCCCCCCCCccceeeecCCcCceeeCcccc
Q 035579 110 VLDMLKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGV--CTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFY 187 (814)
Q Consensus 110 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~--~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 187 (814)
.+..|..+++|.+|.++.|.++.+...+.. .+++|..|.|.+|.+ .+++.++..+|.|++|.+-+|+.-..-....+
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 357788889999999999998888666653 578899999999885 45677788899999999888653222211111
Q ss_pred CCCCCCCCCCcceeeccc
Q 035579 188 GNDSPIPFPCLETLRFEN 205 (814)
Q Consensus 188 ~~~~~~~~~~L~~L~l~~ 205 (814)
. ...+|+|+.|++.+
T Consensus 135 v---l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 135 V---LYKLPSLRTLDFQK 149 (233)
T ss_pred E---EEecCcceEeehhh
Confidence 1 11256666666654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.00013 Score=62.21 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=66.4
Q ss_pred ceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccccc
Q 035579 636 NLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSI 715 (814)
Q Consensus 636 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 715 (814)
.+..+++++|++....-. +..+.....|+..+|++| .+..+|.... ..++..++|++++ |++..+|..+
T Consensus 28 E~h~ldLssc~lm~i~da--vy~l~~~~el~~i~ls~N--~fk~fp~kft------~kf~t~t~lNl~~-neisdvPeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADA--VYMLSKGYELTKISLSDN--GFKKFPKKFT------IKFPTATTLNLAN-NEISDVPEEL 96 (177)
T ss_pred HhhhcccccchhhHHHHH--HHHHhCCceEEEEecccc--hhhhCCHHHh------hccchhhhhhcch-hhhhhchHHH
Confidence 355677888876533211 145666778888889887 8888888763 4567888999998 8899999888
Q ss_pred ccCCCCCeEEecCCCCCCccCC
Q 035579 716 VDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 716 ~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
..++.|+.|+++.+ .+...|.
T Consensus 97 Aam~aLr~lNl~~N-~l~~~p~ 117 (177)
T KOG4579|consen 97 AAMPALRSLNLRFN-PLNAEPR 117 (177)
T ss_pred hhhHHhhhcccccC-ccccchH
Confidence 88999999999884 5666655
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00014 Score=62.04 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=79.7
Q ss_pred ccEEEEeccCCc--chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 520 LESLSVYKCSKL--ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 520 L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
+..++++.|... ...+..+.....|+..++++|.+....+.....++.++.|++++| .+.++|..+..++.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 556677777543 334556667777888899998877665555566778899999987 78889988888999999999
Q ss_pred ccccccccccccccCCCCcceEEecC-ccCccc
Q 035579 598 FQCERLEALPKGLHNLTSLQELTIGG-ALPSLE 629 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~ 629 (814)
+.| .+...|.-+..+.++..|+..+ ....++
T Consensus 108 ~~N-~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 108 RFN-PLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccC-ccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 988 5666677676777777777766 444443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0011 Score=37.71 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.0
Q ss_pred ccceeecCCCCccccccccCCCC
Q 035579 6 KLHHLNNSNTDSLEEMPLGIGKL 28 (814)
Q Consensus 6 ~L~~L~l~~~~~~~~lp~~i~~L 28 (814)
+||+||+++|+ ++.+|++|++|
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT-
T ss_pred CccEEECCCCc-CEeCChhhcCC
Confidence 58999999998 99999988765
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0052 Score=59.11 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=84.3
Q ss_pred hHhhcCCCCcceEeecccCCcccccc----cCCCCCCccEEEecCCCCceecCCC--------------CCCCCCcceEe
Q 035579 535 AERLDNNTSLETIGINFCENLKILPS----GLHNLRQLREITIQRCGNLVSFPEG--------------GLPCAKLSELR 596 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~~~--------------~~~l~~L~~L~ 596 (814)
...+.+|+.|+..+|++|-+....|. .+++-+.|++|.+++| .++.+..+ ..+-|.|++..
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 34566777888888888776654433 3556778888888877 44433211 22346788887
Q ss_pred eccccccccccc-----cccCCCCcceEEecC-ccC-----cccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCC
Q 035579 597 IFQCERLEALPK-----GLHNLTSLQELTIGG-ALP-----SLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFS 663 (814)
Q Consensus 597 l~~~~~l~~lp~-----~~~~l~~L~~L~l~~-~~~-----~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~ 663 (814)
...| .+...|. .+..-..|+.+.+.. +|. .+.. ...+.+|+.|++..|..+..........++.++
T Consensus 164 cgrN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 164 CGRN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred eccc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 7777 4444433 222225677777765 332 2211 234688888888888766654433334677888
Q ss_pred cccEEEEecC
Q 035579 664 SLRHLTIDGC 673 (814)
Q Consensus 664 ~L~~L~l~~~ 673 (814)
.|++|.+.+|
T Consensus 243 ~lrEL~lnDC 252 (388)
T COG5238 243 LLRELRLNDC 252 (388)
T ss_pred hhhhccccch
Confidence 8888888886
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0021 Score=61.66 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred cccccEEEEeccCCcch----hhHhhcCCCCcceEeecccCCcc---c-------ccccCCCCCCccEEEecCCCCceec
Q 035579 517 PATLESLSVYKCSKLES----IAERLDNNTSLETIGINFCENLK---I-------LPSGLHNLRQLREITIQRCGNLVSF 582 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~---~-------~~~~~~~l~~L~~L~l~~~~~l~~~ 582 (814)
...+..+++++|.+-++ +...+.+-.+|+..+++.-.... . +.+.+-.||+|+..++++|..-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 45677888888776544 34455566677777776632221 1 1234556788888888887544444
Q ss_pred CCC----CCCCCCcceEeeccc
Q 035579 583 PEG----GLPCAKLSELRIFQC 600 (814)
Q Consensus 583 ~~~----~~~l~~L~~L~l~~~ 600 (814)
|+. +.+-+.|++|.+++|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC
Confidence 432 344567788888777
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.00062 Score=65.49 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=71.9
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC--CCCCCCCcceEe
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE--GGLPCAKLSELR 596 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~ 596 (814)
+.+.|+.++|...+.- ....|+.|++|.|+-|++... ..+..|++|++|+|..| .+.++.+ .+.++++|+.|+
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 5667777777655432 356789999999999998876 34778999999999987 5555543 345788999999
Q ss_pred eccccccccccc-----cccCCCCcceEEe
Q 035579 597 IFQCERLEALPK-----GLHNLTSLQELTI 621 (814)
Q Consensus 597 l~~~~~l~~lp~-----~~~~l~~L~~L~l 621 (814)
|..|+-.+.-+. -+..+|+|++||=
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccC
Confidence 999976655433 2456778887763
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.00075 Score=64.91 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=14.7
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
++.|+.|.|+-|.+.+. ..+..++.|++|+|..|
T Consensus 40 Mp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKN 73 (388)
T ss_pred cccceeEEeeccccccc------hhHHHHHHHHHHHHHhc
Confidence 34444444444444333 22344444444444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.16 Score=44.99 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=13.9
Q ss_pred cCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecc
Q 035579 561 GLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQ 599 (814)
Q Consensus 561 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 599 (814)
.|.++++|+.+.+.. .+..++. .+..+++|+.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc
Confidence 445555566555553 2334433 344444555555543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.013 Score=56.50 Aligned_cols=39 Identities=26% Similarity=0.081 Sum_probs=21.2
Q ss_pred CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 633 LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 633 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
.+.+|.+|++.+|......- .....|.-+++|+.|+-..
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~d-yre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDD-YREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcchhhhhcccCCcccccc-HHHHHHHHhhhhccccccc
Confidence 34667777777775433110 0113456667777776655
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.16 Score=44.87 Aligned_cols=82 Identities=22% Similarity=0.288 Sum_probs=38.2
Q ss_pred hhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-cccCCC
Q 035579 537 RLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK-GLHNLT 614 (814)
Q Consensus 537 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~ 614 (814)
.|.++++|+.+.+.. .....-...+..+++|+.+.+.++ +..++. .+..+++++.+.+.. ....++. .+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccc
Confidence 355566666666653 333333455677777777777653 455544 455566777777754 2333322 344456
Q ss_pred CcceEEecC
Q 035579 615 SLQELTIGG 623 (814)
Q Consensus 615 ~L~~L~l~~ 623 (814)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 666665544
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.022 Score=29.93 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=11.7
Q ss_pred cccceeecCCCCcccccc
Q 035579 5 IKLHHLNNSNTDSLEEMP 22 (814)
Q Consensus 5 ~~L~~L~l~~~~~~~~lp 22 (814)
++|++|++++|+ ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 479999999999 88887
|
... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.024 Score=54.75 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=36.3
Q ss_pred ccccEEEeecc--CCccccccccCCCCCcceEeeecCCC--CcccCCCCCCCCCcEEEecccC
Q 035579 365 CRLEYLILSCC--EGLVKLPQSSLSLCSLREIGIYKCSS--LVSFPEVALPSKLEKIHIGACD 423 (814)
Q Consensus 365 ~~L~~L~L~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~--l~~~~~~~~~~~L~~L~l~~~~ 423 (814)
++|++|.++.| +....++.....+|+|+++++++|.. +.++.++..+.+|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 67777777777 44444444455567777777777532 2334445556667777777665
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.029 Score=51.99 Aligned_cols=86 Identities=21% Similarity=0.371 Sum_probs=51.4
Q ss_pred ceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-c
Q 035579 636 NLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-S 714 (814)
Q Consensus 636 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 714 (814)
.++.++-+++.+..... ..+..++.++.|.+.+|. .+ .+.. +...-...++|+.|+|++|+.+++-.- +
T Consensus 102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck-~~---dD~~--L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCK-YF---DDWC--LERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCchHHHHHH----HHHhccchhhhheecccc-ch---hhHH--HHHhcccccchheeeccCCCeechhHHHH
Confidence 46677777777666555 456777777777777752 22 1111 000112456777777777777775543 6
Q ss_pred cccCCCCCeEEecCCCC
Q 035579 715 IVDLQNLTELCLRDCPK 731 (814)
Q Consensus 715 ~~~l~~L~~L~l~~c~~ 731 (814)
+..+++|+.|.+++.+.
T Consensus 172 L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHHhhhhHHHHhcCchh
Confidence 66777777777766443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.15 Score=26.79 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=6.0
Q ss_pred CCCeEEecCCCCCCccC
Q 035579 720 NLTELCLRDCPKLKYFP 736 (814)
Q Consensus 720 ~L~~L~l~~c~~l~~lp 736 (814)
+|+.|++++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555543 44443
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.12 Score=29.28 Aligned_cols=20 Identities=40% Similarity=0.360 Sum_probs=11.1
Q ss_pred cccEEEeeccCCccccccccC
Q 035579 366 RLEYLILSCCEGLVKLPQSSL 386 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~ 386 (814)
+|++|++++|.+. .+|..+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666543 5555443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.18 Score=29.89 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.7
Q ss_pred CcccceeecCCCCccccccccC
Q 035579 4 LIKLHHLNNSNTDSLEEMPLGI 25 (814)
Q Consensus 4 l~~L~~L~l~~~~~~~~lp~~i 25 (814)
|++|++|+|++|. ++.+|+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 5789999999999 99999874
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.18 Score=29.89 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.7
Q ss_pred CcccceeecCCCCccccccccC
Q 035579 4 LIKLHHLNNSNTDSLEEMPLGI 25 (814)
Q Consensus 4 l~~L~~L~l~~~~~~~~lp~~i 25 (814)
|++|++|+|++|. ++.+|+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHH
Confidence 5789999999999 99999874
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.06 Score=49.94 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=36.4
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CCC-CCCCCcEEEecccCCCCCCchhhhcCCCCCccE
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EVA-LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEI 442 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 442 (814)
.++.++-+++.+..+--+.+..++.++.|.+.+|..+.+.. .++ ..++|+.|++++|..+++..-... ..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHH
Confidence 34555555555444433344555555566665555443321 111 244555555555544443322222 33444444
Q ss_pred EEEec
Q 035579 443 LYIEG 447 (814)
Q Consensus 443 L~l~~ 447 (814)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 44443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 814 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 4e-06 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 5e-22
Identities = 72/327 (22%), Positives = 110/327 (33%), Gaps = 40/327 (12%)
Query: 438 SSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILE 497
S E LY +G +L L Q H + +S++ + +E
Sbjct: 12 SGRENLYFQGSTALR-----PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQ-----IE 61
Query: 498 HLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKI 557
+ + + P +L + L ++ + L+ + I+ L
Sbjct: 62 TRTGRALKATADLLEDATQPG-RVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLME 118
Query: 558 LPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGL------- 610
LP + L +T+ R L + P +L EL I C L LP+ L
Sbjct: 119 LPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 611 --HNLTSLQELTIGG-ALPSL-EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 666
L +LQ L + + SL NL SL IR + + G H L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-----PLSALGPAIHHLPKLE 232
Query: 667 HLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCL 726
L + GC + ++PP A L L + NL L I L L +L L
Sbjct: 233 ELDLRGCTA-LRNYPPIFGGR-------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 727 RDCPKLKYFPEKGLPSSLLRLSILSCP 753
R C L P L + L I+ P
Sbjct: 285 RGCVNLSRLPS--LIAQLPANCIILVP 309
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 55/330 (16%), Positives = 103/330 (31%), Gaps = 43/330 (13%)
Query: 333 SLRRLTIRSCPKLQSLVAE-----EEKDQQQQLCELSCRLE-----YLILSCCEGLVKLP 382
L + L+ + + + R + L
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 383 QS--SLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSS 439
+ + + L FP + S L+ + I A L LP+ M +
Sbjct: 73 DLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDT-MQQF-AG 128
Query: 440 LEILYIEGCRSLTYIAAVQLPSSLKNLQ------IHGCYNIKTLTVEEGIPSSSSSRYTS 493
LE L + L LP+S+ +L I C + L +S
Sbjct: 129 LETLTLARN-PLR-----ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182
Query: 494 SILEHLSIVGCPSLTCIFSKNELPAT------LESLSVYKCSKLESIAERLDNNTSLETI 547
L+ L + + LPA+ L+SL + L ++ + + LE +
Sbjct: 183 VNLQSLRLEWT-GIR------SLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEEL 234
Query: 548 GINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALP 607
+ C L+ P L+ + ++ C NL++ P +L +L + C L LP
Sbjct: 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 608 KGLHNLTSLQELTIGGALPSLEEDGLPTNL 637
+ L + + + L + + P
Sbjct: 295 SLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 40/242 (16%), Positives = 72/242 (29%), Gaps = 38/242 (15%)
Query: 531 LESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCA 590
+ S +++ E + L+ L ++ R + P
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-- 58
Query: 591 KLSELRIFQCERLEALPKGLHNLTS--LQELTIGG-ALPSL-EEDGLPTNLHSLDIRGN- 645
++ L+A L + T L + LP ++ ++L + I
Sbjct: 59 ---QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG 115
Query: 646 -MEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR 704
ME+ + +F+ L LT+ + + P L L +L I
Sbjct: 116 LMELPDT-------MQQFAGLETLTLARN--PLRALPASIASL-------NRLRELSIRA 159
Query: 705 FPNLERLSSSI---------VDLQNLTELCLRDCPKLKYFPEK-GLPSSLLRLSILSCPL 754
P L L + L NL L L ++ P +L L I + PL
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPL 218
Query: 755 IE 756
Sbjct: 219 SA 220
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 31/206 (15%), Positives = 55/206 (26%), Gaps = 33/206 (16%)
Query: 2 GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSGSRLPELKLLTYLRGTLH 61
+ +L + +L + + S R T
Sbjct: 9 HHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN--RWHSAWRQANSNNPQIE--TRT 64
Query: 62 ISKLENVTD-IGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAET---EMGVLDMLKPH 117
L+ D + DA + L L S + L
Sbjct: 65 GRALKATADLLEDATQ------PGRVALEL---------RSVPLPQFPDQAFRL------ 103
Query: 118 KNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGM 176
+L+ I G + P + + L TL + LP S+ L+ L+ L++R
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQQFA--GLETLTLARNPL-RALPASIASLNRLRELSIRAC 160
Query: 177 SRVKSLGSEFYGNDSPIPFPCLETLR 202
+ L D+ L L+
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQ 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 1e-13
Identities = 110/605 (18%), Positives = 192/605 (31%), Gaps = 189/605 (31%)
Query: 45 SRLPELKLLTYL--RGTLH-----ISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTD 97
R P + Y+ R L+ +K NV+ +L LR+ LL+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVS--------RLQPYLKLRQALLE------ 146
Query: 98 GSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFPTWL-GDCSFSNLVTLKFKDCGV- 155
L+P KN+ G+ G G K TW+ D S V K D +
Sbjct: 147 ----------------LRPAKNVLIDGVLGSG--K--TWVALDVCLSYKVQCKM-DFKIF 185
Query: 156 ------CTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEW 209
C + +V L L+ L + S + S I LR ++Q
Sbjct: 186 WLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSD----HSSNIK------LRIHSIQAE 233
Query: 210 EDWIPLRSDQGVEGFPK----LRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGG 265
LR + + L + + + A F +
Sbjct: 234 -----LRRLLKSKPYENCLLVLLNV----QN------AKAWNA------------FNL-S 265
Query: 266 CKKVV---WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEEL--KINDMKEQTYM 320
CK ++ ++ TD L + + + L P +++ L K D + Q
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHIS----LDHHSMTLTP--DEVKSLLLKYLDCRPQ--- 316
Query: 321 WKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK 380
L R + + P+ S++AE +D + C+ L
Sbjct: 317 ------------DLPREVLTTNPRRLSIIAESIRDG-------LATWDNWKHVNCDKLTT 357
Query: 381 LPQSSLSLCSLREI-GIYKCSSLVSFPE-VALPSKLEKIHIGACDALKSLPEAWMCD-TN 437
+ +SSL++ E ++ L FP +P+ L + + D +KS +
Sbjct: 358 IIESSLNVLEPAEYRKMFD--RLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHK 413
Query: 438 SSLEILYIEGCRSLTYIAAVQLPSSLKNL---QIH----GCYNI-KTLTVEEGIPSSSSS 489
SL + + S I ++ L +K +H YNI KT ++ IP
Sbjct: 414 YSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 490 RYTSSILEHLSIVGCPSLTCIFSK----------------------NELPATLESLSVYK 527
+ S I HL + P +F + TL+ L YK
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 528 CSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQ-RCGNLV----SF 582
I DN+ E +++ + L L ++ E I + +L+
Sbjct: 532 ----PYIC---DNDPKYE----------RLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 583 PEGGL 587
+ +
Sbjct: 575 EDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-04
Identities = 52/388 (13%), Positives = 102/388 (26%), Gaps = 118/388 (30%)
Query: 467 QIHGCYN----------IKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPS--------LT 508
+ Y + ++ + S + ++H I+
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFW 69
Query: 509 CIFSKNELPATLESLSVYKCSKLES----IAERL---DNNTSLETIGINFCEN------- 554
+ SK E E + + L + + S+ T +
Sbjct: 70 TLLSKQE-----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 555 ------------LKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAK----LSELR-- 596
L L LR + + I G L K L
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLID----------GVLGSGKTWVALDVCLSY 174
Query: 597 ---------IF-----QCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDI 642
IF C E + + L L ++ + + HS +I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-----------IDPNWTSRSDHSSNI 223
Query: 643 RGNMEIWKSMIER---GRGFHRFSSLRHLTIDG-CDDDMV-SFPPEDKRLGTALPLPASL 697
+ + ++ + R + + L L + + +F K L T +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYEN--CL--LVLLNVQNAKAWNAFNLSCKILLTTRF--KQV 277
Query: 698 TDLEIG---RFPNLERLSSSIVDLQNLTELCLR----DCPKLKYFPEKGLPSSLLRLSIL 750
TD +L+ S ++ + L L+ L P + L ++ RLSI+
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDL---PREVLTTNPRRLSII 333
Query: 751 SCPLIEEKCRKDGGQYWDLLTHIPFVRI 778
+ + + D W + I
Sbjct: 334 AESIRDGLATWD---NWKHVNCDKLTTI 358
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 38/327 (11%), Positives = 87/327 (26%), Gaps = 36/327 (11%)
Query: 438 SSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILE 497
+ LE+L + + P + + ++ S L
Sbjct: 105 TELEVLALGSH-GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD-LI 162
Query: 498 HLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKI 557
I P I + + + + + +++ + T L + +
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNITFVSKAVMRLTKLRQFYMGNSPFVAE 221
Query: 558 LPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617
+ + L+++ ++ C L LP L L +Q
Sbjct: 222 NICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276
Query: 618 EL-----------TIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 666
+ + +L + + + + I N + +E + L
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVE--TSLQKMKKLG 333
Query: 667 HLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPN-LERLSSSIV-DLQNLTEL 724
L + P G+ L L + N + + ++ + + L
Sbjct: 334 MLECLYN--QLEGKLPA---FGSE----IKLASLNLAY--NQITEIPANFCGFTEQVENL 382
Query: 725 CLRDCPKLKYFPEKGLPSSLLRLSILS 751
KLKY P S+ +S +
Sbjct: 383 SFAHN-KLKYIPNIFDAKSVSVMSAID 408
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 61/466 (13%), Positives = 121/466 (25%), Gaps = 114/466 (24%)
Query: 338 TIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIY 397
+ KL+ + +CE E + +L L ++ +Y
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEA---WENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257
Query: 398 KCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCR-------- 449
C +L P + A ++++ + R
Sbjct: 258 NCPNLTKLPTF----------LKAL---------------PEMQLINVACNRGISGEQLK 292
Query: 450 -SLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLT 508
+A + ++ + I N+KT VE + L L
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKK-------LGMLEC------- 337
Query: 509 CIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKIL---------- 558
N+L L + KL S+ L N + I NFC + +
Sbjct: 338 ---LYNQLEGKLPAFG--SEIKLASL--NLAYN-QITEIPANFCGFTEQVENLSFAHNKL 389
Query: 559 -----PSGLHNLRQLREITIQR-------CGNLVSFPEGGLPCAKLSELRIFQCERLEAL 606
++ + I N +S + + ++
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF 448
Query: 607 PKG-LHNLTSLQELTIGG----ALPSLEEDGLP------TNLHSLDIRGNMEIWKSMIER 655
PK + L + + G +P L S+D+R N + + +
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-L--TKLSD 505
Query: 656 GRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLER----- 710
L + + FP + +L I + +
Sbjct: 506 DFRATTLPYLVGIDLSYN--SFSKFPTQPLNSS-------TLKGFGIRNQRDAQGNRTLR 556
Query: 711 -LSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLI 755
I +LT+L + ++ E + ++ L I P I
Sbjct: 557 EWPEGITLCPSLTQLQIGSN-DIRKVNE-KITPNISVLDIKDNPNI 600
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 61/418 (14%), Positives = 133/418 (31%), Gaps = 61/418 (14%)
Query: 303 LPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCE 362
L L+ L+I +++ + + + SL L I++ L++ + + +
Sbjct: 122 LTNLQTLRIGNVETFSEI---RRIDFAGLTSLNELEIKAL-SLRNY-QSQSLKSIRDIHH 176
Query: 363 LS---CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPS-KLEKIH 418
L+ +L+ + L + L +L + + + +
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236
Query: 419 IGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLP-------SSLKNLQIHGC 471
+ + L L + + + + G + + +++ L I
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296
Query: 472 Y-------------NIKTLTVE----EGIPSSSSSRYTSSILEHLS-----IVGCPSLTC 509
Y +K +TVE +P S S S LE L +V
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS--LEFLDLSENLMVEEYLKNS 354
Query: 510 IFSKNELPATLESLSVYKC--SKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567
+L++L + + ++ E L +L ++ I+ +P +
Sbjct: 355 ACKGA--WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEK 411
Query: 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALP 626
+R + + + L L + L++ L LQEL I L
Sbjct: 412 MRFLNLSST-GIRVVKTCIPQ--TLEVLDVSNN-NLDSFSL---FLPRLQELYISRNKLK 464
Query: 627 SLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG----CDDDMVSF 680
+L + L L + I N ++ + G F R +SL+ + + C + +
Sbjct: 465 TLPDASLFPVLLVMKISRN-QL--KSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDY 518
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 63/401 (15%), Positives = 122/401 (30%), Gaps = 44/401 (10%)
Query: 366 RLEYLILSCCEGLVKLPQSSLS-LCSLREIGIYKCSSLVSFPEVALPSK---LEKIHIGA 421
LE+L LS L L S L SL+ + + + +L L+ + IG
Sbjct: 75 SLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGN 132
Query: 422 CDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVE- 480
+ + +SL L I+ L SLK+++ +I LT+
Sbjct: 133 VETFSEIRRI-DFAGLTSLNELEIKALS-LRNYQ----SQSLKSIR-----DIHHLTLHL 181
Query: 481 ---EGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAER 537
+ + +S + +L + +L + S + + +
Sbjct: 182 SESAFLLEIFADILSS--VRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597
N I ++ L+ L L + + L I
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK-----VETVTIRRLHI 293
Query: 598 FQCERLEALPKGLHNLTSLQELTIGG----ALPSLEEDGLPTNLHSLDIRGNMEIWKSMI 653
Q L L ++ +T+ +P L +L LD+ N + + +
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSEN-LMVEEYL 351
Query: 654 ERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713
+ + SL+ L + + L L +LT L+I +
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTG-----EILLTLK-NLTSLDI-SRNTFHPMPD 404
Query: 714 SIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPL 754
S + + L L ++ +P +L L + + L
Sbjct: 405 SCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNNNL 443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 76/489 (15%), Positives = 130/489 (26%), Gaps = 78/489 (15%)
Query: 147 TLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI---------PFPC 197
+ +C + + + ++ + ++G G + +
Sbjct: 47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106
Query: 198 LETLRFENMQEWEDWIPLRSDQGVE----GFPKLRELHIISCSKLQGT----FPEHLPAL 249
LE +R + M +D +E F + L + SC L
Sbjct: 107 LEEIRLKRMV--------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158
Query: 250 EMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQN-SVVCRDTSNQVFLAGPLKPRLPKLEE 308
+ L + S G + T L S N S + + S L R P L+
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYT-SLVSLNISCLASEVSFSALER--LVTRCPNLKS 215
Query: 309 LKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCE----LS 364
LK+N LLQ L L C+ LS
Sbjct: 216 LKLNRAVPLE----KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271
Query: 365 C-----------------RLEYLILSCC----EGLVKLPQSSLSLCSLREIGIYKCSSLV 403
RL L LS LVKL L+ + +
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL---LCQCPKLQRLWVLDYIEDA 328
Query: 404 SFPEVALP-SKLEKIHIGACDALKSLPEAWMCDTN--------SSLEILYIEGCRSLTYI 454
+A L ++ + + P + + LE + + CR +T
Sbjct: 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNA 387
Query: 455 AAVQLPSSLKNLQ---IHGCYNIKTLTVEEGIPSSSSSRYTSS--ILEHLSIVGCPSLTC 509
A + + + N+ + + L LS+ G +
Sbjct: 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKV 447
Query: 510 IFSKNELPATLESLSVYKCS-KLESIAERLDNNTSLETIGINFCENL-KILPSGLHNLRQ 567
+E LSV + L SL + I C K L + L
Sbjct: 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507
Query: 568 LREITIQRC 576
+R + + C
Sbjct: 508 MRSLWMSSC 516
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 72/451 (15%), Positives = 141/451 (31%), Gaps = 44/451 (9%)
Query: 302 RLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEK---DQQQ 358
R PK+ +++ + + S L+ + + D +
Sbjct: 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123
Query: 359 QLCELSCRLEYLILSCCEGL--VKLPQSSLSLCSLREIGIYKCS----SLVSFPEVA-LP 411
+ + + L+LS CEG L + + +L+E+ + + S
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 412 SKLEKIHIGAC------DALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLK 464
+ L ++I AL+ L +L+ L + L +A + Q L+
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRC-----PNLKSLKLNRAVPLEKLATLLQRAPQLE 238
Query: 465 NLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524
L G V G+ + S L L ++S L +L+
Sbjct: 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS---RLTTLN 295
Query: 525 VYKCSKL-ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFP 583
+ + + + L L+ + + L + LRE+ + V P
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355
Query: 584 EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIR 643
L L + C +LE++ +T+ +TI P++ L
Sbjct: 356 NVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414
Query: 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIG 703
+E G LR L++ G D + +GT + L +
Sbjct: 415 LTLEPLDIGF--GAIVEHCKDLRRLSLSGLLTD-----KVFEYIGTYAK---KMEMLSVA 464
Query: 704 RFPN----LERLSSSIVDLQNLTELCLRDCP 730
+ + + S +L +L +RDCP
Sbjct: 465 FAGDSDLGMHHVLSG---CDSLRKLEIRDCP 492
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 69/391 (17%), Positives = 119/391 (30%), Gaps = 47/391 (12%)
Query: 302 RLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLC 361
L+EL + + + SL L I S A E +L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE------RLV 207
Query: 362 ELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGA 421
L+ L L+ L KL L E+G ++ V + S +
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA----LSG 263
Query: 422 CDALKSLPEAWMCDTNSSLEILYIEGCRSLTYI----------AAVQLPSSLKNLQ-IHG 470
C L+ L W + L +Y C LT + V+L LQ +
Sbjct: 264 CKELRCLSGFW-DAVPAYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321
Query: 471 CYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSK 530
I+ + G+ +S+ L L + + L S+S+ C K
Sbjct: 322 LDYIE----DAGLEVLAST---CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPK 373
Query: 531 LESIAERLDN--NTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLP 588
LES+ N +L TI N N+ L + + + F
Sbjct: 374 LESVLYFCRQMTNAALITIARN-RPNMTRF--RLCIIEPKAPDYLTLEPLDIGFGAIVEH 430
Query: 589 CAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLP------TNLHSLDI 642
C L L + + ++ L++ + G+ +L L+I
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF--AGDSDLGMHHVLSGCDSLRKLEI 488
Query: 643 RGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673
R K+++ + ++R L + C
Sbjct: 489 RDCPFGDKALLA---NASKLETMRSLWMSSC 516
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 61/407 (14%), Positives = 126/407 (30%), Gaps = 78/407 (19%)
Query: 362 ELSCRLEYLILSCCEGLVKLPQSSLSLC-SLREIGIYKC-----SSLVSFPEVALPSKLE 415
E CR + + + C + P + + +R + + +LV
Sbjct: 41 ERWCRRK-VFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97
Query: 416 KIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIK 475
+ + L+ + M T+ LE++ + + K L + C
Sbjct: 98 EAMSSSYTWLEEIRLKRMVVTDDCLELI-AKSF------------KNFKVLVLSSCEGFS 144
Query: 476 TLTVEEGIPSSSSSRYTSSILEHLSIVGCP----SLTCIFSKNELPATLESLSVYKCSK- 530
T +G+ + +++ L+ L + S + + +L SL++ +
Sbjct: 145 T----DGLAAIAAT---CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197
Query: 531 -----LESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLV----- 580
LE + R +L+++ +N L+ L + L QL E+ V
Sbjct: 198 VSFSALERLVTRC---PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254
Query: 581 -SFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLP----- 634
C +L L F LP + L L + A +++ L
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA--TVQSYDLVKLLCQ 312
Query: 635 -TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPL 693
L L + +E + LR L + + ++
Sbjct: 313 CPKLQRLWVLDYIED-AGLEVLASTCK---DLRELRVFPSEPFVMEPNV----------- 357
Query: 694 PASLTDLEIGR-FPNLERLSSSIVDLQNLTELCL----RDCPKLKYF 735
+LT+ + +L S + + +T L R+ P + F
Sbjct: 358 --ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 1e-09
Identities = 56/453 (12%), Positives = 131/453 (28%), Gaps = 70/453 (15%)
Query: 327 LLQDICSLRRLTIRSCPKLQ--SLVAEEEKDQQ----QQLCELSCRLEYLILSCC----E 376
L + +LR L ++ P+ +L+ E ++ +L+ +
Sbjct: 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127
Query: 377 GLVKLPQSSLSLCSLREIGIYKCSSL--VSFPEVALP-SKLEKIHIGAC----DALKSLP 429
L +L ++ L + + KCS + K++ + + K L
Sbjct: 128 DLDRLAKARAD--DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH 185
Query: 430 EAWMCDTNSSLEIL--YIEGCRSLTYIAAVQLPS---SLKNLQIHGCYNIKTLTVEEGIP 484
E + N+SLE+L Y+ ++ + SL ++++ ++ + +
Sbjct: 186 E--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243
Query: 485 SSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSL 544
+ S+ + + P L L + + +
Sbjct: 244 NLEE-------FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI 295
Query: 545 ETIGINFCENL-KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERL 603
+ + + + + + L + + C +L LRI +
Sbjct: 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADE 355
Query: 604 EALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFS 663
+ + ++ + + LE + + + +S+ G
Sbjct: 356 QGMEDEEGLVSQRGLIALAQGCQELE---------YMAVYVSDITNESLESIGTYLKNLC 406
Query: 664 SLRHLTIDGCD-------DDMVSFPPEDKRLGTALPLPA---SLTDLEIGRF----PNLE 709
R + +D + D+ V + LTDL + PN+
Sbjct: 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466
Query: 710 RLSSSIVD------------LQNLTELCLRDCP 730
+ V NL +L +R C
Sbjct: 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 65/515 (12%), Positives = 149/515 (28%), Gaps = 73/515 (14%)
Query: 147 TLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLG---SEFYGNDSPI------PFPC 197
+ C T + +L+ L ++G R + G +P
Sbjct: 54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113
Query: 198 LETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQ----GTFPEHLPALEMLV 253
L+++ F M + + + L L + CS + H ++ L+
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKAR---ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170
Query: 254 IEGSLCKFEIGGCKKVVWRSATDHLGSQN--SVVCRDTSNQVFLAGPLKPRLPKLEELKI 311
+E S + G + + T L N S + + L +K+
Sbjct: 171 MEESSFSEKDGKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLET--IARNCRSLVSVKV 227
Query: 312 NDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEK-DQQQQLCELSCR---- 366
D + + +L S + + + ++LC L
Sbjct: 228 GDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282
Query: 367 ------------LEYLILSCCEGLVKLPQSSLSLC-SLREIGIYKCSSLVSFPEVALP-S 412
+ L L + + + C +L + +A
Sbjct: 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342
Query: 413 KLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYI----------AAVQLPSS 462
+L+++ I + + + + L L +GC+ L Y+ + + +
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELEYMAVYVSDITNESLESIGTY 401
Query: 463 LKNLQ------IHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSI-VGCPSLT--CIFSK 513
LKNL + I L ++ G+ S L + + LT +
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIG---CKKLRRFAFYLRQGGLTDLGLSYI 458
Query: 514 NELPATLESLSVYKCSKL-ESIAERLDNNTSLETIGINFCENL-KILPSGLHNLRQLREI 571
+ + + + + E + E +L+ + + C + + + + L LR +
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518
Query: 572 TIQRCG---NLVSFPEGGLPCAKLSELRIFQCERL 603
+Q + P + + + +
Sbjct: 519 WVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 46/351 (13%), Positives = 102/351 (29%), Gaps = 35/351 (9%)
Query: 431 AWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSR 490
W + + E + + C + T + +L++L++ G + +
Sbjct: 43 RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102
Query: 491 YTSSI------LEHLSIVGCP----SLTCIFSKNELPATLESLSVYKCSKL--ESIAERL 538
+ + I L+ + L + LE+L + KCS + + +
Sbjct: 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKAR--ADDLETLKLDKCSGFTTDGLLSIV 160
Query: 539 DNNTSLETIGINFCENLKILPSGLH----NLRQLREITIQRCG----NLVSFPEGGLPCA 590
+ ++T+ + + LH + L + + C
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220
Query: 591 KLSELRIFQCERLE--ALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEI 648
L +++ E LE K NL ++ + E+ L G +
Sbjct: 221 SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280
Query: 649 WKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNL 708
+ + F + +R L + + + T + +L LE
Sbjct: 281 GPNEMP--ILFPFAAQIRKLDLLYALLE-------TEDHCTLIQKCPNLEVLETRNVIGD 331
Query: 709 ERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILS--CPLIEE 757
L + L L + + ++ S L L+ C +E
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 56/365 (15%), Positives = 114/365 (31%), Gaps = 61/365 (16%)
Query: 302 RLPKLEEL-----KINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQ 356
LP+L+ L + + W + ++ + L+ A
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS--- 568
Query: 357 QQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPSKL 414
L ++ +L L + + L + + L ++ + + PE A ++
Sbjct: 569 ---LQKMV-KLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQV 621
Query: 415 EKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNI 474
E + LK +P + + + + + + + ++ + N
Sbjct: 622 EGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK-IGSE----GRNISCSMDDYKGINA 675
Query: 475 KTLTVE----EGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSK 530
T+T+ + P+ + + + + + S N + S+ +
Sbjct: 676 STVTLSYNEIQKFPTELFATGSP--ISTIIL----------SNNLM----TSIPE---NS 716
Query: 531 LESIAERLDNNTSLETIGINFCEN-LKILPSGLH--NLRQLREITIQRCGNLVSFPEGGL 587
L+ N L TI + N L L L L + + SFP L
Sbjct: 717 LKPKDGNYKNTYLLTTI--DLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPL 773
Query: 588 PCAKLSELRIFQCERL------EALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSL 640
++L I P G+ SL +L IG + ++E P L+ L
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP-QLYIL 832
Query: 641 DIRGN 645
DI N
Sbjct: 833 DIADN 837
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 45/366 (12%), Positives = 88/366 (24%), Gaps = 84/366 (22%)
Query: 434 CDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTV----EEGIPSSSSS 489
D N + L + G + ++P ++ L +K L+ E
Sbjct: 319 LDNNGRVTGLSLAGFGAKG-----RVPDAIGQLT-----ELKVLSFGTHSETVSGRLFGD 368
Query: 490 RYTSSILEHLSIVGCPSL--TCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETI 547
+ + ++ + L E + D+ SL+
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428
Query: 548 GINFCEN-LKILPSGLHNLRQLREITIQRCGNLVSFPE---------------GGLP--- 588
I N + + + L +L+ I
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSW 487
Query: 589 --CAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNM 646
L+++ ++ C + LP L++L LQ L N+
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL----------------NIACNRGISAA 531
Query: 647 EIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDL------ 700
++ ++ + ++ FP +L L L
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYN--NLEEFPASA-----SLQKMVKLGLLDCVHNK 584
Query: 701 -----EIGRFPNLERLS------SSI-----VDLQNLTELCLRDCPKLKYFPEKGLPSSL 744
G L L I + L KLKY P S+
Sbjct: 585 VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSV 643
Query: 745 LRLSIL 750
+ +
Sbjct: 644 YVMGSV 649
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 46/244 (18%), Positives = 71/244 (29%), Gaps = 41/244 (16%)
Query: 528 CSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCG---------- 577
S L + +N S + E + P G R++ ++ C
Sbjct: 20 SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79
Query: 578 --NLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLP 634
L S PE L L C L LP+ +L SL AL LP
Sbjct: 80 NLGLSSLPEL---PPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLKALSD-----LP 130
Query: 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLP 694
L L + N +E+ S L+ + +D + P L +
Sbjct: 131 PLLEYLGVSNN------QLEKLPELQNSSFLKIIDVDNN--SLKKLPDLPPSL-EFIAAG 181
Query: 695 A-SLTDL-EIGRFPNLE-------RLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLL 745
L +L E+ P L L +L + + L+ PE L
Sbjct: 182 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN-ILEELPELQNLPFLT 240
Query: 746 RLSI 749
+
Sbjct: 241 TIYA 244
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 69/358 (19%), Positives = 121/358 (33%), Gaps = 68/358 (18%)
Query: 299 LKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLT-----------IRSCPKLQS 347
L L+ L +++ + L L L +++ L+
Sbjct: 106 LPELPQSLKSLLVDNN--------NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI 157
Query: 348 LVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE 407
+ + + ++L +L LE++ + L +LP+ +L L I S L P+
Sbjct: 158 IDVDN--NSLKKLPDLPPSLEFIAAGNNQ-LEELPELQ-NLPFLTAIYADNNS-LKKLPD 212
Query: 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQ 467
LP LE I G L+ LPE L +Y + L LP +L+
Sbjct: 213 --LPLSLESIVAGNNI-LEELPELQNL---PFLTTIYADNNL-LK-----TLPDLPPSLE 260
Query: 468 IHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYK 527
+ + E S L L + + + +ELP L L+
Sbjct: 261 ALNVRDNYLTDLPELPQS----------LTFLDVSEN-IFSGL---SELPPNLYYLNASS 306
Query: 528 CSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGL 587
++ S+ + SLE + ++ L LP+ L +L +L PE
Sbjct: 307 N-EIRSLCDLP---PSLEELNVSNN-KLIELPALPPRLERL---IASFN-HLAEVPEL-- 355
Query: 588 PCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGN 645
L +L + L P ++ L+ + +P LP NL L + N
Sbjct: 356 -PQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPE-----LPQNLKQLHVETN 406
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 86/424 (20%), Positives = 139/424 (32%), Gaps = 95/424 (22%)
Query: 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDA 424
L+ + L ++P + ++ S E + P + A
Sbjct: 11 TFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM--------A 61
Query: 425 LKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQ--IHGCYNIKTLTVEEG 482
+ L + + L + L+ LP +L+ + C ++ L
Sbjct: 62 VSRLRDCL----DRQAHELELNNL-GLS-----SLPELPPHLESLVASCNSLTEL----- 106
Query: 483 IPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNT 542
P S L+ L + +L + ++LP LE L V +LE + E L N++
Sbjct: 107 -PELPQS------LKSLLVDNN-NLKAL---SDLPPLLEYLGVSNN-QLEKLPE-LQNSS 153
Query: 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCE- 601
L+ I ++ +LK LP +L + L PE L L +
Sbjct: 154 FLKIIDVDNN-SLKKLPDLPPSLEFI---AAGNN-QLEELPE----LQNLPFLTAIYADN 204
Query: 602 -RLEALPKGLHNLTSL-------QELTIGGALPSLEE-----------DGLPTNLHSLDI 642
L+ LP +L S+ +EL LP L LP +L +L++
Sbjct: 205 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264
Query: 643 RGNMEIWKSMIERGRGFHR-FSSLRHLTIDGCDDDMV-SFPPEDKRLG------TALP-L 693
R N SL L + + PP L +L L
Sbjct: 265 RDN---------YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 315
Query: 694 PASLTDLEIGRFPN-LERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSC 752
P SL +L + N L L + L L L PE LP +L +L +
Sbjct: 316 PPSLEELNVSN--NKLIELPALP---PRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN 367
Query: 753 PLIE 756
PL E
Sbjct: 368 PLRE 371
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 73/364 (20%), Positives = 113/364 (31%), Gaps = 82/364 (22%)
Query: 301 PRLPKLEELKINDMKEQTYMWKSHN---ELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQ 357
P L LKI D+ +N +L SL + + +L+ L
Sbjct: 147 PELQNSSFLKIIDV--------DNNSLKKLPDLPPSLEFIAAGNN-QLEEL--------- 188
Query: 358 QQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKI 417
+L L L + L KLP SL I L PE+ L I
Sbjct: 189 PELQNLP-FLTAIYADNNS-LKKLPDL---PLSLESIVAGNNI-LEELPELQNLPFLTTI 242
Query: 418 HIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCY----- 472
+ LK+LP+ SLE L + LT + LP SL L +
Sbjct: 243 YADNNL-LKTLPDLP-----PSLEALNVRDNY-LTDLPE--LPQSLTFLDVSENIFSGLS 293
Query: 473 ----NIKTLTVE----EGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524
N+ L + S LE L++ L + + LP LE L
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPS------LEELNVSNN-KLIELPA---LPPRLERLI 343
Query: 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE 584
L + E +L+ + + + L+ P ++ LR +L PE
Sbjct: 344 ASFN-HLAEVPELP---QNLKQLHVEYN-PLREFPDIPESVEDLRM-----NSHLAEVPE 393
Query: 585 GGLPCAKLSELRIFQCERLEALPKGLHNLTSLQEL---------TIGGALPSLEEDGLPT 635
L +L + + L P ++ L+ LE+D
Sbjct: 394 L---PQNLKQLHV-ETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Query: 636 NLHS 639
+ H
Sbjct: 450 HHHH 453
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 51/275 (18%), Positives = 81/275 (29%), Gaps = 69/275 (25%)
Query: 503 GCPSLTCIFSKNE--------------LPATLESLSVYKCSKLESIAER-LDNNTSLETI 547
GC C S LP L +KL I + LE I
Sbjct: 1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVL-TKLRVIQKGAFSGFGDLEKI 59
Query: 548 GINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFPEG---GLPCAKLSELRIFQCERL 603
I+ + L+++ + NL +L EI I++ NL+ LP L L I +
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP--NLQYLLISNT-GI 116
Query: 604 EALPKGLH-NLTSLQELTIGG--ALPSLEE---DGLPTNLHSLDIRGNMEIWKSMIERGR 657
+ LP + L I + ++E GL L + N
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN------------ 164
Query: 658 GFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSI-V 716
+ + +G L +L + NLE L + +
Sbjct: 165 ---GIQEIHNSAFNGT----------------------QLDELNLSDNNNLEELPNDVFH 199
Query: 717 DLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILS 751
L + + P GL +L +L S
Sbjct: 200 GASGPVILDISRTR-IHSLPSYGL-ENLKKLRARS 232
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 54/218 (24%), Positives = 80/218 (36%), Gaps = 26/218 (11%)
Query: 412 SKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAA---VQLPSSLKNLQI 468
LEKI I D L+ + A + L + IE +L YI LP +L+ L I
Sbjct: 54 GDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLI 111
Query: 469 HGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCI----FSKNELPATLESLS 524
IK +P L I ++ I F L L
Sbjct: 112 SNT-GIKH------LPDVHKIHSLQ--KVLLDIQDNINIHTIERNSFVG--LSFESVILW 160
Query: 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFP 583
+ K ++ I N T L+ + ++ NL+ LP+ H + I R + S P
Sbjct: 161 LNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP 218
Query: 584 EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTI 621
GL L +LR L+ LP L L +L E ++
Sbjct: 219 SYGL--ENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 52/354 (14%), Positives = 119/354 (33%), Gaps = 67/354 (18%)
Query: 412 SKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGC 471
++ K +G + ++ + + + L + + I V+ ++L +
Sbjct: 24 AEKMKTVLGKTNVTDTVSQTDL----DQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNN 78
Query: 472 YNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKL 531
+ +T + + L + + + I L L L+++ ++
Sbjct: 79 -QLTDITPLKNLTK----------LVDILMNNNQ-IADITPLANLT-NLTGLTLFNN-QI 124
Query: 532 ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAK 591
I + L N T+L + ++ + + + L L L++++ GN V+ +
Sbjct: 125 TDI-DPLKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSF---GNQVTDLKPLANLTT 178
Query: 592 LSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWK 650
L L I ++ + L LT+L+ L + + G+ TNL L + GN
Sbjct: 179 LERLDISSN-KVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ---- 232
Query: 651 SMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLE-IGRFPNLE 709
++ ++L L + +++L + L
Sbjct: 233 --LKDIGTLASLTNLTDLDLANN----------------------QISNLAPLSGLTKLT 268
Query: 710 RLS---------SSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPL 754
L S + L LT L L + +L+ +L L++ +
Sbjct: 269 ELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 53/315 (16%), Positives = 111/315 (35%), Gaps = 62/315 (19%)
Query: 438 SSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILE 497
++L L + + +T I ++ ++L L++ I ++ G+ S + + + +
Sbjct: 112 TNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTD 169
Query: 498 HLSIVGCPSLTCIF-SKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLK 556
+ +L + S N++ + + L+ K + LES+ NN + + NL
Sbjct: 170 LKPLANLTTLERLDISSNKV-SDISVLA--KLTNLESL--IATNNQISDITPLGILTNLD 224
Query: 557 IL---------PSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEAL 606
L L +L L ++ + + + GL KL+EL++ ++ +
Sbjct: 225 ELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAPLSGLT--KLTELKLGAN-QISNI 280
Query: 607 PKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSL 665
L LT+L L + L + NL L + N I + L
Sbjct: 281 S-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN------ISDISPVSSLTKL 333
Query: 666 RHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDL-EIGRFPNLERLS---------SSI 715
+ L ++D+ + N+ LS + +
Sbjct: 334 QRLFFYNN----------------------KVSDVSSLANLTNINWLSAGHNQISDLTPL 371
Query: 716 VDLQNLTELCLRDCP 730
+L +T+L L D
Sbjct: 372 ANLTRITQLGLNDQA 386
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 64/403 (15%), Positives = 117/403 (29%), Gaps = 102/403 (25%)
Query: 372 LSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPS-KLEKIHIGACDALKSLPE 430
++ E L L + + ++ + + + ++L A S KL + + L L
Sbjct: 57 MTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYL---ACDSNKLTNLDVTPLTKLTYL-- 111
Query: 431 AWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSR 490
CDTN L L + LTY+ + ++L + + + L
Sbjct: 112 --NCDTNK-LTKLDVSQNPLLTYLNCAR--NTLTEIDVSHNTQLTELDC----------- 155
Query: 491 YTSSILEHLSIVGCPSLTCI-FSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGI 549
+ + + L + LT + S N++ L V + L + D N ++ + +
Sbjct: 156 HLNKKITKLDVTPQTQLTTLDCSFNKI----TELDVSQNKLLNRL--NCDTN-NITKLDL 208
Query: 550 NFCENLKILPSG--------LHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCE 601
N L L + L QL L L KL+ L Q +
Sbjct: 209 NQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVN-PLTELDVSTLS--KLTTLHCIQTD 265
Query: 602 RLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHR 661
L + L + T L G + LD+ N
Sbjct: 266 -LLEID--LTHNTQLIYFQAEGC----------RKIKELDVTHN---------------- 296
Query: 662 FSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSS------- 714
+ L L +T+L++ + P L L +
Sbjct: 297 -TQLYLLDCQAA----------------------GITELDLSQNPKLVYLYLNNTELTEL 333
Query: 715 -IVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLIE 756
+ L L + ++ F G +L I
Sbjct: 334 DVSHNTKLKSLSCVNA-HIQDFSSVGKIPALNNNFEAEGQTIT 375
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 44/263 (16%), Positives = 75/263 (28%), Gaps = 60/263 (22%)
Query: 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILP-SGLHNLR-------QLR 569
ATL SL + + + ++ T L + N+ L S NL +L
Sbjct: 42 ATLTSLDCHNS-SITDMTG-IEKLTGLTKLICTSN-NITTLDLSQNTNLTYLACDSNKLT 98
Query: 570 EITIQRCGNLVSF-----PEGGLPCAKLSELRIFQCE--RLEALPKGLHNLTSLQELTIG 622
+ + L L ++ L C L + + + T L EL
Sbjct: 99 NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH 156
Query: 623 G-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFP 681
+ + T L +LD N +I + ++ + L L D
Sbjct: 157 LNKKITKLDVTPQTQLTTLDCSFN-KI--TELD----VSQNKLLNRLNCDTN-------- 201
Query: 682 PEDKRLGTALPLPASLTDLEIGRFPNLERL--------SSSIVDLQNLTELCLRDCPKLK 733
++T L++ + L L + L LT L
Sbjct: 202 --------------NITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVN-PLT 246
Query: 734 YFPEKGLPSSLLRLSILSCPLIE 756
L L L + L+E
Sbjct: 247 ELDVSTLS-KLTTLHCIQTDLLE 268
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 54/266 (20%), Positives = 92/266 (34%), Gaps = 42/266 (15%)
Query: 402 LVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPS 461
VS + L ++ ++ + + L SLP+ + + +L I L LP
Sbjct: 49 AVSLLKECLINQFSELQLNRLN-LSSLPD----NLPPQITVLEITQNA-LI-----SLPE 97
Query: 462 SLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLE 521
+L+ + + T+ E S L+HL + LT + ELPA LE
Sbjct: 98 LPASLEYLDACDNRLSTLPELPAS----------LKHLDVDNNQ-LTML---PELPALLE 143
Query: 522 SLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGN--L 579
++ +L + E TSLE + + L LP +L L L
Sbjct: 144 YINADNN-QLTMLPELP---TSLEVLSVRNN-QLTFLPELPESLEALD------VSTNLL 192
Query: 580 VSFPEGGLPCAKLSELRIF---QCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPT 635
S P + E IF + R+ +P+ + +L + + L S + L
Sbjct: 193 ESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252
Query: 636 NLHSLDIRGNMEIWKSMIERGRGFHR 661
D G + + HR
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTLHR 278
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 41/211 (19%), Positives = 65/211 (30%), Gaps = 47/211 (22%)
Query: 536 ERLD-NNTSLETIGINFCENLKIL----------PSGLHNLRQLREITIQRCGNLVSFPE 584
L N +L ++ N + +L P +L L L + PE
Sbjct: 62 SELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDA----CDNRLSTLPE 117
Query: 585 GGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ----ELTIGGALPSLEEDGLPTNLHSL 640
A L L + +L LP+ L + +LT LP L PT+L L
Sbjct: 118 L---PASLKHLDVDNN-QLTMLPELPALLEYINADNNQLT---MLPEL-----PTSLEVL 165
Query: 641 DIRGN-MEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTD 699
+R N + + E SL L + + S P +
Sbjct: 166 SVRNNQLTFLPELPE---------SLEALDVSTNL--LESLPAV---PVRNHHSEETEIF 211
Query: 700 LEIGRFPNLERLSSSIVDLQNLTELCLRDCP 730
R + + +I+ L + L D P
Sbjct: 212 FRC-RENRITHIPENILSLDPTCTIILEDNP 241
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 60/330 (18%), Positives = 111/330 (33%), Gaps = 70/330 (21%)
Query: 438 SSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILE 497
S+ L + G + + I ++ ++L+ L ++G I ++ + L
Sbjct: 44 ESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGN-QITDISPLSNLVK----------LT 91
Query: 498 HLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKI 557
+L I +T I + L L L + + + I+ L N T + ++ + NL
Sbjct: 92 NLYIGTN-KITDISALQNLT-NLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSD 147
Query: 558 LPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGLHNLTSL 616
S L N+ L +T+ + L L L + ++E + L +LTSL
Sbjct: 148 -LSPLSNMTGLNYLTVTES-KVKDVTPIANLT--DLYSLSLNYN-QIEDIS-PLASLTSL 201
Query: 617 QELTIGG----ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672
T + + + T L+SL I N I S L L I
Sbjct: 202 HYFTAYVNQITDITPVA--NM-TRLNSLKIGNNK------ITDLSPLANLSQLTWLEIGT 252
Query: 673 CDDDMVSFPPEDKRLGTALPLPASLTDLE-IGRFPNLERLS---------SSIVDLQNLT 722
++D+ + L+ L+ S + +L L
Sbjct: 253 N----------------------QISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLN 290
Query: 723 ELCLRDCPKLKYFPEKGLPSSLLRLSILSC 752
L L + +L + + L L+ L
Sbjct: 291 SLFLNNN-QLGNEDMEVI-GGLTNLTTLFL 318
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 56/357 (15%), Positives = 110/357 (30%), Gaps = 67/357 (18%)
Query: 387 SLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIE 446
L + K S + + K+ + + S+ ++LE L +
Sbjct: 20 DLAEGIRAVLQKAS-VTDVVTQEELESITKLVVAGEK-VASIQGIEYL---TNLEYLNLN 74
Query: 447 GCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPS 506
G + +T I+ + L NL I I ++ + + + L L + +
Sbjct: 75 GNQ-ITDISPLSNLVKLTNLYIGTN-KITDISALQNLTN----------LRELYLNED-N 121
Query: 507 LTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLR 566
++ I L + SL++ L ++ L N T L + + + + + + NL
Sbjct: 122 ISDISPLANLTK-MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV--TPIANLT 177
Query: 567 QLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-AL 625
L +++ N + L + ++ + + N+T L L IG +
Sbjct: 178 DLYSLSLN--YNQIEDISPLASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNKI 233
Query: 626 PSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDK 685
L + L L+I N I + L+ L +
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQ------ISDINAVKDLTKLKMLNVGSN------------ 275
Query: 686 RLGTALPLPASLTDLE-IGRFPNLERLS-----------SSIVDLQNLTELCLRDCP 730
++D+ + L L I L NLT L L
Sbjct: 276 ----------QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 46/257 (17%)
Query: 367 LEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALK 426
L L +S + L LP L L L P LPS L K+ I L
Sbjct: 83 LRTLEVSGNQ-LTSLPVLPPGLLELSIFSN----PLTHLPA--LPSGLCKLWIFGNQ-LT 134
Query: 427 SLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSS 486
SLP L+ L + + L + A LPS L L + + +L P
Sbjct: 135 SLPVLP-----PGLQELSVSDNQ-LASLPA--LPSELCKLWAYNN-QLTSL------PML 179
Query: 487 SSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLET 546
S L+ LS+ L + LP+ L L Y +L S+ + L+
Sbjct: 180 PSG------LQELSVSDN-QLASLP---TLPSELYKLWAYNN-RLTSLPALP---SGLKE 225
Query: 547 IGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEAL 606
+ ++ L LP L++L + L S P + L L +++ +L L
Sbjct: 226 LIVSGNR-LTSLPVLPSELKEL---MVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRL 276
Query: 607 PKGLHNLTSLQELTIGG 623
P+ L +L+S + + G
Sbjct: 277 PESLIHLSSETTVNLEG 293
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 51/308 (16%), Positives = 97/308 (31%), Gaps = 53/308 (17%)
Query: 328 LQDICSLRR-----LTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLP 382
L ++ + + S L + K+ + + C + P
Sbjct: 26 LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP 85
Query: 383 QSS-LSLCSLREIGIYKCSSLVSFPEVALPS--KLEKIHIGAC----DALKSLPEAWMCD 435
+ S ++ + + VS L KL+ + + + +L +
Sbjct: 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----- 140
Query: 436 TNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQ---IHGCYNIKTLTVEEGIPSSSS---- 488
NS+L L + GC + A L SS L + C++ V+ + S
Sbjct: 141 -NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199
Query: 489 ---SRYTSSI--------------LEHLSIVGCPSLT--CIFSKNELPATLESLSVYKCS 529
S Y ++ L HL + L C +L L+ LS+ +C
Sbjct: 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-LQHLSLSRCY 258
Query: 530 KLESIA-ERLDNNTSLETIGINFC---ENLKILPSGLHNLR----QLREITIQRCGNLVS 581
+ L +L+T+ + L++L L +L+ I GN +
Sbjct: 259 DIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKN 318
Query: 582 FPEGGLPC 589
G+ C
Sbjct: 319 QEIWGIKC 326
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 37/211 (17%), Positives = 78/211 (36%), Gaps = 28/211 (13%)
Query: 448 CRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSL 507
C+ + I LP S + L++ +++T IPS + S + + + + +L
Sbjct: 20 CKDIQRIP--SLPPSTQTLKLIET-HLRT------IPSHAFSNLPN--ISRIYVSIDVTL 68
Query: 508 TCIFSK--NELPATLESLSVYKCSKLESIAER-LDNNTSLETIGINFCENLKILP--SGL 562
+ S L + + + L I L L+ +GI LK+ P + +
Sbjct: 69 QQLESHSFYNLSK-VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKV 126
Query: 563 HNLRQLREITIQRCGNLVSFPEG---GLPCAKLSELRIFQCERLEALPKGLHNLTSLQEL 619
++ + I + S P GL + L+++ ++ N T L +
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNN-GFTSVQGYAFNGTKLDAV 184
Query: 620 TIGG--ALPSLEED---GLPTNLHSLDIRGN 645
+ L +++D G+ + LD+
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 65/468 (13%), Positives = 145/468 (30%), Gaps = 81/468 (17%)
Query: 324 HNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQ 383
I L L + + +L + E+ + + L LS + L
Sbjct: 187 SPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANT-----SIRNLSLSNSQ-LSTTSN 239
Query: 384 SS---LSLCSLREIGIYKCSSLVSFPEVALP--SKLEKIHIGACDALKSLPEAWMCDTNS 438
++ L +L + + + L + +LE + + ++ L +
Sbjct: 240 TTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGL-F 296
Query: 439 SLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVE----EGIPSSSSSRYTSS 494
++ L ++ + I+ L + + ++ L +E GI S+ + +
Sbjct: 297 NVRYLNLKRSFTKQSISLASL-PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN- 354
Query: 495 ILEHL-------SIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETI 547
L++L S+ + T + + L L++ K + ++ LE +
Sbjct: 355 -LKYLSLSNSFTSLRTLTNETFVSLAHS---PLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 548 GINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFPEGGL-PCAKLSELRIF--QCERL 603
+ E + L L + EI + + L L + + +
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 604 EALPKGLHNLTSLQELTIGG-ALPSLEEDGLP--TNLHSLDIRGNM--EIWKSMIERG-- 656
++ P L +L L + + ++ +D L L LD++ N +WK G
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 657 RGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL----- 711
S L L ++ ++ + F +L L
Sbjct: 530 YFLKGLSHLHILNLESN----------------------GFDEIPVEVFKDLFELKIIDL 567
Query: 712 ---------SSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSIL 750
+S + +L L L+ + +K + L+ L
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTEL 614
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 40/262 (15%), Positives = 83/262 (31%), Gaps = 60/262 (22%)
Query: 438 SSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVE--EGIPS-----SSSSR 490
LE LY+ + L + ++P +L+ L++H I + G+ ++
Sbjct: 100 VKLERLYLSKNQ-LKELPE-KMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP 156
Query: 491 YTSSILEHLSIVGCPSLTCIF-SKNEL-------PATLESLSVYKCSKLESIAERLDNNT 542
SS +E+ + G L+ I + + P +L L LD N
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL-------------HLDGN- 202
Query: 543 SLETIGINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFPEGGL-PCAKLSELRIFQC 600
+ + + L L L ++ + ++ + G L L EL +
Sbjct: 203 -----------KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN 250
Query: 601 ERLEALPKGLHNLTSLQELTIGG----------ALPSLEEDGLPTNLHSLDIRGNMEIWK 650
+L +P GL + +Q + + P + + + N +
Sbjct: 251 -KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA-SYSGVSLFSN-PVQY 307
Query: 651 SMIERGRGFHRFSSLRHLTIDG 672
I+ F + +
Sbjct: 308 WEIQPS-TFRCVYVRAAVQLGN 328
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 53/259 (20%), Positives = 91/259 (35%), Gaps = 63/259 (24%)
Query: 528 CS--KLESIAERLDNNTSLETIGINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFPE 584
CS LE + + L +T+L + N + + G NL+ L + + +
Sbjct: 38 CSDLGLEKVPKDLPPDTALLDLQNN---KITEIKDGDFKNLKNLHTLILINN-KISKISP 93
Query: 585 GGLPCAKLSELRIFQCE--RLEALPKGLHNLTSLQELTIGG----ALPSLEEDGLPTNLH 638
G A L +L +L+ LP+ + +LQEL + + +GL +
Sbjct: 94 GAF--APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLN-QMI 148
Query: 639 SLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALP--LPAS 696
+++ N + S IE G F L ++ I + T +P LP S
Sbjct: 149 VVELGTN-PLKSSGIENG-AFQGMKKLSYIRIADT------------NI-TTIPQGLPPS 193
Query: 697 LTDLEIGR-------------FPNLERLS-----------SSIVDLQNLTELCLRDCPKL 732
LT+L + NL +L S+ + +L EL L + KL
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KL 252
Query: 733 KYFPE--KGLPS-SLLRLS 748
P ++ L
Sbjct: 253 VKVPGGLADHKYIQVVYLH 271
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 70/483 (14%), Positives = 143/483 (29%), Gaps = 64/483 (13%)
Query: 302 RLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLC 361
RL L L + ++ H + Q L L + + L + + L
Sbjct: 55 RLINLTFLDLTR----CQIYWIHEDTFQSQHRLDTLVLTAN-PLIFM-------AETALS 102
Query: 362 ELSCRLEYLILSCCEGLVKLPQSSLS-LCSLREIGIYKCSSLVSFPEVALP--SKLEKIH 418
L++L G+ + L +L + + + S KL+ +
Sbjct: 103 GPK-ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLD 159
Query: 419 IGACDALKSLPEAWMCD-TNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTL 477
A+ L + M ++ L + G + ++L G N L
Sbjct: 160 FQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN--LL 216
Query: 478 TVEEGIPSSSSSRYTSSILEHLSIVGCPSLT-----------CIFSKNEL----PATLES 522
+ +G+ +S+ E + K+ T
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276
Query: 523 LSVYKC-----SKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCG 577
S + + L + L ++L+ + ++ + + N L ++I+
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 578 NLVSFPEGGL-PCAKLSELRIF--QCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGL 633
+ G L L EL + E + L NL+ LQ L + SL+ +
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 634 P--TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTAL 691
L LD+ + + + F L+ L + + +
Sbjct: 397 KECPQLELLDLAFT-RL--KVKDAQSPFQNLHLLKVLNLSHS--LLDISSEQ------LF 445
Query: 692 PLPASLTDLEIGR---FPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLS 748
+L L + + ++S+ L L L L C L + +SL ++
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAF-TSLKMMN 503
Query: 749 ILS 751
+
Sbjct: 504 HVD 506
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 20/202 (9%)
Query: 556 KILPSGLHNLRQLREITIQRCGNLVSFPEGGL-PCAKLSELRIFQCERLEALPKG-LHNL 613
I + L L + + RC + E +L L + L + + L
Sbjct: 47 TIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGP 104
Query: 614 TSLQELTIGG-ALPSLEEDGLP--TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTI 670
+L+ L + S++ L L SL + N S I+ L+ L
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI---SSIKLP-KGFPTEKLKVLDF 160
Query: 671 DGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPN-LERLSSSIVDLQNLTELCLRDC 729
+ ED + T+L + N + + D L
Sbjct: 161 QNN--AIHYLSKED------MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 730 PKLKYFPEKGLPSSLLRLSILS 751
L + S++ L + +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGT 234
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 59/337 (17%), Positives = 116/337 (34%), Gaps = 47/337 (13%)
Query: 369 YLILSCCEGLVKLPQSSLSLCSLREIGIYKCSS--LVSFPEVALPSKLEKIHIGACDALK 426
+L L K S+ + S GI K SS L S P L ++ + + +
Sbjct: 8 VWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNR-IT 65
Query: 427 SLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQI-HGCYN-IKTLTVEEGIP 484
+ + + +L+ L + + I SSL +L+ YN + +
Sbjct: 66 YISNSDL-QRCVNLQALVLTSNG-INTIEE-DSFSSLGSLEHLDLSYNYLSN------LS 116
Query: 485 SSSSSRYTSSILEHLSIVGCPSLTCIFSK---NELPATLESLSVYKCSKLESIAER-LDN 540
SS +S L L+++G P + + L L+ L V I +
Sbjct: 117 SSWFKPLSS--LTFLNLLGNP-YKTLGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAG 172
Query: 541 NTSLETIGINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFPEG---GLPCAKLSELR 596
T LE + I+ +L+ L +++ + + + + E + ELR
Sbjct: 173 LTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELR 230
Query: 597 IFQCE--RLEALPKG----LHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNME 647
+ L G L + + + I +L + + + + L L+ N
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELEFSRNQ- 288
Query: 648 IWKSMIERGRGFHRFSSLRHLTIDG----CDDDMVSF 680
+ + G F R +SL+ + + C + +
Sbjct: 289 L--KSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDY 322
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 45/213 (21%)
Query: 373 SCCEGLVKLPQSSLSLCSLREIGI---YKCSSLVSFPEVALPSKLEKIHIGA---CDALK 426
+ + + + +L V L K++ I A CD LK
Sbjct: 71 YPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEK---VILSEKIKNIEDAAFKGCDNLK 127
Query: 427 S--LPEAWMCDTNSSLEILYIEGCRSLTYI-------AAVQLPSSLKNLQIHGCYNIKTL 477
+ + ++ +L S+T I A + + ++ ++T
Sbjct: 128 ICQIRK------KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT 181
Query: 478 TVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCI---FSKNELPATLESLSVYKCSKLESI 534
+ LE + I + +L L L S+
Sbjct: 182 I----QVGAMGK------LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231
Query: 535 AERLDNNTSLETIGIN---FCENLK--ILPSGL 562
+ T+ TI + L LP L
Sbjct: 232 D---ISKTNATTIPDFTFAQKKYLLKIKLPHNL 261
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 24/195 (12%), Positives = 50/195 (25%), Gaps = 50/195 (25%)
Query: 375 CEGLVKLPQSSLSLC----SLREIGIYKCSSLVSFPEVALPSKLEKIHIGA---CDALKS 427
+ +P S + L + + K+ +
Sbjct: 147 SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET---TIQVGAMGKLEDEIMKAGLQPRD 203
Query: 428 L------------PEAWMCDTNSSLEILYI-------------EGCRSLTYIAAVQLPSS 462
+ + D +L L I + L I +LP +
Sbjct: 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI---KLPHN 260
Query: 463 LKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522
LK + N L +P+S ++ +E + +GC +L + + +
Sbjct: 261 LKTIGQRVFSNCGRLAGTLELPASVTA------IEFGAFMGCDNLRYV---LATGDKITT 311
Query: 523 LSVY---KCSKLESI 534
L + I
Sbjct: 312 LGDELFGNGVPSKLI 326
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 67/357 (18%), Positives = 119/357 (33%), Gaps = 27/357 (7%)
Query: 303 LPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCE 362
+ L K+ + +TY K E LQD + L I + + + E
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDF-NTESLHIVFPTNKEFHFILDVSVKTVANLE 193
Query: 363 LSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCS----SLVSFPEVALPSKLEKIH 418
LS L + C + + + L + + S + ++ + +
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253
Query: 419 IGACDALKSLPEAWMCDTNSSLEILYIEGCRS-LTYIAAVQLPSSLKNLQIHGCYNIKTL 477
I L + +SL+ L I S + + N+ I T
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313
Query: 478 TVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKN--ELPATLESLSVY--KCSKLES 533
V PS S HL LT +N L LE+L + + +L
Sbjct: 314 MVHMLCPSKISP------FLHLDFSNN-LLTDTVFENCGHLT-ELETLILQMNQLKELSK 365
Query: 534 IAERLDNNTSLETIGINFCENLKILPSGL-HNLRQLREITIQRCGNLVSFPEGGLPCAKL 592
IAE SL+ + I+ G + L + + L LP ++
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP-PRI 423
Query: 593 SELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE---DGLPTNLHSLDIRGN 645
L + +++++PK + L +LQEL + L S+ + D L +L + + N
Sbjct: 424 KVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT-SLQKIWLHTN 478
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 65/296 (21%), Positives = 115/296 (38%), Gaps = 38/296 (12%)
Query: 366 RLEYLILSCCEGLVKLPQSSLS-LCSLREIGIYKCSSLVSFPEVAL--PSKLEKIHIGAC 422
LE L L+ + + + + L +LR +G+ L P S L K+ I
Sbjct: 57 HLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISEN 114
Query: 423 DALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAA---VQLPSSLKNLQIHGCYNIKTLTV 479
+ L + D +L+ L + L YI+ L S L+ L + C N+ +
Sbjct: 115 K-IVILLDYMFQD-LYNLKSLEVGDND-LVYISHRAFSGLNS-LEQLTLEKC-NLTS--- 166
Query: 480 EEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSK--NELPATLESLSVYKCSKLESIAER 537
IP+ + S L L + + I L L+ L + L+++
Sbjct: 167 ---IPTEALSHLHG--LIVLRLRHLN-INAIRDYSFKRLYR-LKVLEISHWPYLDTMTPN 219
Query: 538 LDNNTSLETIGINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFPEGGL--PCAKLSE 594
+L ++ I C NL +P + +L LR + + N +S EG + +L E
Sbjct: 220 CLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLS--YNPISTIEGSMLHELLRLQE 276
Query: 595 LRIFQCERLEALPKG-LHNLTSLQELTIGG-ALPSLEE---DGLPTNLHSLDIRGN 645
+++ +L + L L+ L + G L +LEE + NL +L + N
Sbjct: 277 IQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG-NLETLILDSN 330
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 66/468 (14%), Positives = 141/468 (30%), Gaps = 69/468 (14%)
Query: 222 EGFPKLRELHI----ISCSKLQGTFPEHLPALEMLVIEG----------------SLCKF 261
+G L EL + +S + L+ + +L AL L + SL
Sbjct: 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153
Query: 262 EIGGCK-KVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLK----PRLPKLEELKINDMKE 316
+ + +V + L + +N ++ + + L+I D+
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213
Query: 317 QTYMWKSHNELLQDICSLRRLTIRSCPKLQSL------VAEEEKDQQQQLCELSCRLEYL 370
+ I + ++ + + + +++ L S + +L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRHL 271
Query: 371 ILSCCEGLVKLPQSSLS-LCSLREIGIYKCSSLVSFPEVALP--SKLEKIHIGACDALKS 427
LS + L L L+ + + + + A L+ +++ L
Sbjct: 272 DLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL-LGE 328
Query: 428 LPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLP--SSLKNLQIHGCYNIKTLTVEEGIPS 485
L + + + ++ + I L+ L + + T+
Sbjct: 329 LYSSNFYG-LPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN-ALTTI-------- 377
Query: 486 SSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLE 545
L +V P + + N + LS + L+ + L L+
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKIN--LTANLI-----HLSENRLENLDILY-FLLRVPHLQ 429
Query: 546 TIGINFCENLKILPSGL-HNLRQLREITIQ----RCGNLVSFPEGGLPC-AKLSELRIFQ 599
+ +N L ++ + + + L L +
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 600 CERLEALPKG-LHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGN 645
L +LP G +LT+L+ L++ L L + LP NL LDI N
Sbjct: 490 N-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN 536
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 19/152 (12%)
Query: 530 KLESIAER-LDNNTSLETIGINFCENLKILPSG-LHNLRQLREITIQRCGNLVSFPEG-- 585
L I + + L + + ++ +PS + + L + + L EG
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 586 -GLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEED---GLPTNLHSL 640
GL L L + C ++ +P L L L+EL + G P + GL +L L
Sbjct: 193 EGLF--NLKYLNLGMC-NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKL 247
Query: 641 DIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672
+ + ++ S+IER F +SL L +
Sbjct: 248 WVMNS-QV--SLIERN-AFDGLASLVELNLAH 275
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 18/161 (11%)
Query: 520 LESLSVYKCSKLESIAER-LDNNTSLETIGINFCENLKILPSGL-HNLRQLREITIQRCG 577
L +L ++ +L +I + L+ + + ++ +PS + + LR + +
Sbjct: 114 LNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELK 171
Query: 578 NLVSFPEG---GLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGL 633
L EG GL L L + C L +P L L L EL + G L ++
Sbjct: 172 RLSYISEGAFEGLS--NLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 634 P--TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672
+L L + + +I +IER F SL + +
Sbjct: 228 QGLMHLQKLWMIQS-QI--QVIERN-AFDNLQSLVEINLAH 264
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 46/318 (14%), Positives = 101/318 (31%), Gaps = 49/318 (15%)
Query: 459 LPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPA 518
LP S KNL + ++ + S S + L+ L + S+ E+
Sbjct: 26 LPFSTKNLDLSFN-PLR------HLGSYSFFSFPE--LQVLDL----------SRCEI-Q 65
Query: 519 TLESLSVYKCSKLESIAERLDNN--TSLETIGINFCENLKIL-----------PSGLHNL 565
T+E + S L ++ L N SL + +L+ L + +L
Sbjct: 66 TIEDGAYQSLSHLSTL--ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 566 RQLREITIQRCGNLVSFPEGGL--PCAKLSELRIFQCERLEALPKG-LHNLTSLQELTI- 621
+ L+E+ + + SF L L + +++++ L L + L +
Sbjct: 124 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLS 181
Query: 622 ----GGALPSLEEDGL-PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676
+ ++ LH L +R N + M +G R + + ++
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFP 736
+ + G + + + + L N++ L ++
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLD--DIIDLFNCLTNVSSFSLVSV-TIERVK 298
Query: 737 EKGLPSSLLRLSILSCPL 754
+ L +++C
Sbjct: 299 DFSYNFGWQHLELVNCKF 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 37/277 (13%), Positives = 78/277 (28%), Gaps = 44/277 (15%)
Query: 533 SIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGL-PCAK 591
+I E N + + + L S + ++E+ + L L P K
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59
Query: 592 LSELRIFQCERLEALPKGLHNLTSLQELTIGG-------ALPSLEE------------DG 632
L L + L L +L++L+ L + PS+E
Sbjct: 60 LELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117
Query: 633 LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLG---- 688
++ + N +I +M+ S +++L + + D V+F
Sbjct: 118 RGQGKKNIYLANN-KI--TMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 689 --------TALPLPASLTDLEIGRFPN--LERLSSSIVDLQNLTELCLRDCPKLKYFPEK 738
+ L+ + L + +T + LR+ KL +
Sbjct: 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232
Query: 739 -GLPSSLLRLSILSCPLIEEKCRKDGGQYWDLLTHIP 774
+L + +D + +
Sbjct: 233 LRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVA 268
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 36/159 (22%)
Query: 520 LESLSVYKCSKLESIAER--LDNNTSLETIGINFCENLKILPSG-LHNLRQLREITIQRC 576
LE L L+ ++E + +L + I+ + ++ +G + L L + +
Sbjct: 103 LEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGN 160
Query: 577 GNLVSFPEGGL-PCAKLSELRIFQCERLEALPKG-LHNLTSLQELTIGG----------- 623
+F L+ L + QC +LE L ++L+SLQ L +
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
Query: 624 -ALPSLEE----------------DGLPTNLHSLDIRGN 645
L SL+ P++L L++ N
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 46/213 (21%), Positives = 72/213 (33%), Gaps = 38/213 (17%)
Query: 554 NLKILPSG-LHNLRQLRE-------ITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEA 605
L+ LP G L QL + ++ + C + F G L L + +
Sbjct: 39 KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF---GTT--SLKYLDLSFN-GVIT 92
Query: 606 LPKGLHNLTSLQELTIGG-ALPSLEEDGL---PTNLHSLDIRGNMEIWKSMIERGRGFHR 661
+ L L+ L L + E + NL LDI + G F+
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HT--RVAFNGI-FNG 148
Query: 662 FSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPN-LERLSSSI-VDLQ 719
SSL L + G +F P+ +LT L++ + LE+LS + L
Sbjct: 149 LSSLEVLKMAGN-SFQENFLPD------IFTELRNLTFLDLSQ--CQLEQLSPTAFNSLS 199
Query: 720 NLTELCLRDCPKLKYFPE---KGLPS-SLLRLS 748
+L L + K L S +L S
Sbjct: 200 SLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYS 231
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 45/255 (17%), Positives = 76/255 (29%), Gaps = 55/255 (21%)
Query: 438 SSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILE 497
L+ LYI L I LPSSL L+IH I+ + +
Sbjct: 102 RKLQKLYISKNH-LVEIPP-NLPSSLVELRIHDN-RIRKVP--------------KGVFS 144
Query: 498 HLSIVGCPSLTCIF-SKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLK 556
L ++ CI N L + + KL + R+ L I + E L
Sbjct: 145 GL-----RNMNCIEMGGNPLENSGFEPGAFDGLKLNYL--RISEA-KLTGIPKDLPETLN 196
Query: 557 IL-----------PSGLHNLRQLREITIQRCGNLVSFPEG---GLPCAKLSELRIFQCER 602
L L +L + + + G LP L EL + +
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLP--TLRELHLDNN-K 252
Query: 603 LEALPKGLHNLTSLQELTIG---------GALPSLEEDGLPTNLHSLDIRGNMEIWKSMI 653
L +P GL +L LQ + + + + + + N + +
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEV 311
Query: 654 ERGRGFHRFSSLRHL 668
+ F + +
Sbjct: 312 QPA-TFRCVTDRLAI 325
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 67/528 (12%), Positives = 131/528 (24%), Gaps = 149/528 (28%)
Query: 303 LPKLEELKINDMKEQTYMWKSHNELLQDICSLRRL--------------TIRSCPKLQSL 348
L LE L + T + + + + +L++L + L +
Sbjct: 103 LTSLENLVAVE----TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158
Query: 349 ------VAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSL 402
+ + Q L E L +S + + + L E+ + +
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNS 217
Query: 403 VSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSS 462
+ + L L L + + R+L +
Sbjct: 218 SNIMK------------TCLQNLAGL-------HVHRLILGEFKDERNLEIFEP-SIMEG 257
Query: 463 LKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCI-FSKNELPATLE 521
L ++ I + + + +++ + + + LE
Sbjct: 258 LCDVTIDEFRL---------------TYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE 301
Query: 522 SLSVYKCSKLESIAERLDNNTSLETIGINFCENLKIL---------PSGLHNLRQLREIT 572
+ K K +S+ + L+ LK L L L +
Sbjct: 302 DVP--KHFKWQSL--SIIRC-QLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356
Query: 573 IQRCGNLVSFPEGGLPCAKLSELRI--FQCERLEALPKGLHNLTSLQELTIGG------- 623
+ R L + LR + L LQ L
Sbjct: 357 LSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT 415
Query: 624 ------ALPSLEE--------DGLP-------TNLHSLDIRGNMEIWKSMIERGRGFHRF 662
+L L T+L++L + GN +K F
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS--FKDNTLSN-VFANT 472
Query: 663 SSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL----------- 711
++L L + C L + G F L RL
Sbjct: 473 TNLTFLDLSKC----------------------QLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 712 ---SSSIVDLQNLTELCLRDCPKLKYFPEK--GLPSSLLRLSILSCPL 754
SS L +L+ L +++ P SL ++ + +
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 74/438 (16%), Positives = 126/438 (28%), Gaps = 94/438 (21%)
Query: 367 LEYLILSCCEGLVKLPQSSLS-LCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDAL 425
+ + LS L L S S L+ + + +C ++E I A L
Sbjct: 34 TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-------------EIETIEDKAWHGL 79
Query: 426 KSL-------------PEAWMCDTNSSLEILYIEGCRSLTYIAAVQLP--SSLKNLQIHG 470
L +SLE L L + + + +LK L +
Sbjct: 80 HHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVET-KLASLESFPIGQLITLKKLNVAH 137
Query: 471 CYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSK-----NELPATLESLSV 525
I + + + ++ L H+ + + I E P SL +
Sbjct: 138 N-FIHSCKLPAYFSNLTN-------LVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDM 188
Query: 526 YKCSKLESIAERLDNNTSLETIGINFCENL-KILPSGLHNLRQLREITIQRCG-----NL 579
++ I ++ L + + N I+ + L NL L + NL
Sbjct: 189 SLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247
Query: 580 VSFPEG---GLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG------------- 623
F GL + E R+ H L ++ +++ G
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307
Query: 624 ----------ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673
L LP L SL + N SL +L +
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLP-FLKSLTLTMN------KGSISFKKVALPSLSYLDLSRN 360
Query: 674 DDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLK 733
+SF SL L++ F +S++ + L+ L L + LK
Sbjct: 361 ---ALSFSGCCSYSDLGTN---SLRHLDL-SFNGAIIMSANFMGLEELQHLDFQHS-TLK 412
Query: 734 YFPEKGLPSSLLRLSILS 751
E SL +L L
Sbjct: 413 RVTEFSAFLSLEKLLYLD 430
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 9e-04
Identities = 51/340 (15%), Positives = 97/340 (28%), Gaps = 75/340 (22%)
Query: 449 RSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLT 508
+ L+ + +PSS KN+ + +K + S S S ++ L+ L +
Sbjct: 21 QKLSKVPD-DIPSSTKNIDLSFN-PLKI------LKSYSFSNFSE--LQWLDL------- 63
Query: 509 CIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQL 568
S+ E+ +E A L + + P L L
Sbjct: 64 ---SRCEI------------ETIEDKA--WHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 569 REITIQRCGNLVSFPEGGL-PCAKLSELRIFQCERLE--ALPKGLHNLTSLQELTIGG-A 624
+ L S + L +L + + LP NLT+L + +
Sbjct: 107 ENLVAVET-KLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 625 LPSLEEDGL-----------------------------PTNLHSLDIRGNMEIWKSMIER 655
+ ++ + L LH L +RGN M
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Query: 656 GRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA-SLTDLEIGRFPNLERLSSS 714
+ R + + D+ + L ++ + + +
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPS----IMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 715 IVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPL 754
L N++ + L +KY + LSI+ C L
Sbjct: 281 FHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQL 319
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 71/477 (14%), Positives = 131/477 (27%), Gaps = 94/477 (19%)
Query: 303 LPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCE 362
L L+EL + Q++ E ++ +L L + S K+QS+ + L +
Sbjct: 123 LKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSN-KIQSI----YCTDLRVLHQ 174
Query: 363 LSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGAC 422
+ L LS + + + L ++ + ++ +
Sbjct: 175 MPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMK------------TCI 221
Query: 423 DALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEG 482
L L L + +L L L NL I +
Sbjct: 222 QGLAGL-------EVHRLVLGEFRNEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDD 273
Query: 483 IPSSSSSRY--TSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDN 540
I + +S L ++I + F + L + C + +L +
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-------WQHLELVNCKFGQFPTLKLKS 326
Query: 541 NTSLETIGINFCENLKILPSGLHNLRQLREITIQRCG----NLVSFPEGGLPCAKLSELR 596
L F N +L L + + R G S + G L L
Sbjct: 327 LKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT--SLKYLD 379
Query: 597 IFQCERLEALPKGLHNLTSLQELTIGG----ALPSLEEDGLPTNLHSLDIRGNM--EIWK 650
+ + + L L+ L + NL LDI +
Sbjct: 380 LSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 651 SMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLER 710
+ F+ SSL L + G + NL
Sbjct: 439 GI------FNGLSSLEVLKMAGN------------------SFQENFLPDIFTELRNLTF 474
Query: 711 LS-----------SSIVDLQNLTELCLRDCPKLKYFPEKGLP--SSLLRLSILSCPL 754
L ++ L +L L + +LK P+ +SL ++ + + P
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 50/334 (14%), Positives = 113/334 (33%), Gaps = 75/334 (22%)
Query: 360 LCELSCRLEYLILSCC-----------EGLVKLPQS----SLSLCSLREIGIYK-CSSLV 403
+ L LS + L +P + +LS L + +L
Sbjct: 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105
Query: 404 SFPEVALPSKLEKIHIGACD----ALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQL 459
+ +P + + +G D + +A + +S+ L + G L ++ +L
Sbjct: 106 A-----IPFTITVLDLGWNDFSSKSSSEFKQA-FSNLPASITSLNLRGND-LGIKSSDEL 158
Query: 460 -------PSSLKNLQIHGCYNIKTLTVE---EGIPSSSSSRYTSSILEHLSI-------V 502
P+++ +L + G N+ + + + S +S + L +
Sbjct: 159 IQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPAS------VTSLDLSANLLGLK 211
Query: 503 GCPSLTCIFSKNELPATLESLSVYKCSK----LESIAERLDNNTSLETIGINFC------ 552
L IFS P + SL++ LE++ D+ L+T+ +++
Sbjct: 212 SYAELAYIFSSI--PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269
Query: 553 -ENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLH 611
E K L + N++++ + G + P +P + L +R + +
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKN--GKEIH-PSHSIPISNL--IRELSG-KADVP----- 318
Query: 612 NLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGN 645
+L + + ++E+ +P L
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 39/205 (19%)
Query: 496 LEHLSIVGCPSLTCI-FSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCEN 554
L H+ + PSL S N L ++ +E + +N S+ +
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLS------TLAIPIAVEEL--DASHN-SINVVRGPVNVE 227
Query: 555 LKIL---------PSGLHNLRQLREITIQRCGNLVSFPEGGL-PCAKLSELRIFQCERLE 604
L IL + L N L E+ + L +L L I RL
Sbjct: 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYI-SNNRLV 285
Query: 605 ALPKGLHNLTSLQELTIGG-ALPSLEEDGLP-TNLHSLDIRGN--MEIWKSMIERGRGFH 660
AL + +L+ L + L +E + L +L + N + +
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL---------KLS 336
Query: 661 RFSSLRHLTIDG----CDDDMVSFP 681
+L++LT+ C+ F
Sbjct: 337 THHTLKNLTLSHNDWDCNSLRALFR 361
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 47/257 (18%), Positives = 79/257 (30%), Gaps = 53/257 (20%)
Query: 519 TLESLSVYKCS----KLESIAERLDNNTSLETIGINFC----ENLKILPSGLHNLRQLRE 570
++E S+ + +S+ L + S++ I ++ E + L + + + L
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 571 ITIQRCG----------NLVSFPEGGLPCAKLSELRI----FQCERLEALPKGLHNLTSL 616
L + L C KL +R+ F E L L T L
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 617 QEL-------------TIGGALPSL---EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFH 660
+ L I AL L ++ L S+ N SM E + F
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 661 RFSSLRHLTIDGCD--DDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNL------ERLS 712
L + + + + L L L L++ N L+
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIE-----HLLLEGLAYCQELKVLDLQD--NTFTHLGSSALA 237
Query: 713 SSIVDLQNLTELCLRDC 729
++ NL EL L DC
Sbjct: 238 IALKSWPNLRELGLNDC 254
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 83/252 (32%)
Query: 496 LEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENL 555
++ S+T ++NEL +++ + ++S+ + + ++ + +N +
Sbjct: 23 TIKDNL-KKKSVTDAVTQNELN-SIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNGNKLT 78
Query: 556 KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTS 615
I L NL+ L + + K+ +L L +L
Sbjct: 79 DI--KPLTNLKNLGWLFLDEN--------------KIKDL------------SSLKDLKK 110
Query: 616 LQELTIGG-------ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 668
L+ L++ L L L SL + N I R + L L
Sbjct: 111 LKSLSLEHNGISDINGLVHL------PQLESLYLGNN------KITDITVLSRLTKLDTL 158
Query: 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLE-IGRFPNLERLS---------SSIVDL 718
+++ ++D+ + L+ L ++ L
Sbjct: 159 SLEDN----------------------QISDIVPLAGLTKLQNLYLSKNHISDLRALAGL 196
Query: 719 QNLTELCLRDCP 730
+NL L L
Sbjct: 197 KNLDVLELFSQE 208
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 58/353 (16%), Positives = 117/353 (33%), Gaps = 74/353 (20%)
Query: 366 RLEYLILSCCEGLVKLPQSSLS-LCSLREIGIYKCSSLVSFPEVALP--SKLEKIHIGAC 422
+ + + KLP + L + + + + A ++K+++G
Sbjct: 52 NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 109
Query: 423 DALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAA---VQLPSSLKNLQIHGCYNIKTLTV 479
A++ LP + L +L +E L+ + P L L + N++ +
Sbjct: 110 -AIRYLPPH-VFQNVPLLTVLVLERND-LSSLPRGIFHNTPK-LTTLSMSNN-NLERI-- 162
Query: 480 EEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNEL----PATLESL-----------S 524
E+ +++S L++L + S N L + + SL +
Sbjct: 163 EDDTFQATTS------LQNLQL----------SSNRLTHVDLSLIPSLFHANVSYNLLST 206
Query: 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKIL---------PSGLHNLRQLREITIQR 575
+ +E + +N S+ + L IL + L N L E+ +
Sbjct: 207 LAIPIAVEEL--DASHN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 576 CGNLVSFPEGGL-PCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGL 633
L +L L I RL AL + +L+ L + L +E +
Sbjct: 264 N-ELEKIMYHPFVKMQRLERLYI-SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP 321
Query: 634 P-TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG----CDDDMVSFP 681
L +L + N I ++ +L++LT+ C+ F
Sbjct: 322 QFDRLENLYLDHN-SI--VTLK----LSTHHTLKNLTLSHNDWDCNSLRALFR 367
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 7/129 (5%)
Query: 496 LEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENL 555
++ L+I T + L LE L + L TSL + I+ +
Sbjct: 68 IKDLTINNI-HATNYNPISGLSN-LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 556 KILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGLHNLT 614
+ + ++ L ++ I + G + LP +L L I + +G+ +
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP--ELKSLNIQFD-GVHDY-RGIEDFP 181
Query: 615 SLQELTIGG 623
L +L
Sbjct: 182 KLNQLYAFS 190
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 814 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.98 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.98 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.97 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.93 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.9 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.88 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.87 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.86 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.86 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.86 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.85 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.85 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.85 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.84 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.82 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.82 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.82 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.81 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.81 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.81 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.81 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.8 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.8 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.8 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.79 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.78 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.78 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.78 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.77 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.77 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.77 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.76 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.76 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.74 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.74 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.73 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.72 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.71 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.71 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.7 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.7 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.68 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.67 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.67 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.66 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.66 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.65 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.64 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.64 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.62 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.6 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.57 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.56 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.55 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.53 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.52 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.51 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.49 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.49 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.49 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.49 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.48 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.48 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.45 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.42 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.41 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.4 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.38 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.37 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.35 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.34 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.33 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.32 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.31 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.27 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.27 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.27 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.26 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.25 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.24 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.23 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.21 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.17 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.13 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.12 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.08 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.08 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.04 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.01 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.98 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.98 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.98 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.97 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.97 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.96 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.96 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.95 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.93 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.92 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.87 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.79 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.76 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.63 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.62 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.62 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.56 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.5 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.42 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.37 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.29 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.23 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.2 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.18 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.14 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.12 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.05 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.98 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.28 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.04 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.0 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.97 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 94.24 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.66 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 89.96 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 89.56 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=476.53 Aligned_cols=644 Identities=17% Similarity=0.113 Sum_probs=412.9
Q ss_pred cccceeecCCCCcccc----ccccCCCCCCCCccCceEEcCCCC-CCccccccccCCCceEEEccccCCCChhhhHHh--
Q 035579 5 IKLHHLNNSNTDSLEE----MPLGIGKLTCLQTLSNFVVGKDSG-SRLPELKLLTYLRGTLHISKLENVTDIGDAKEA-- 77 (814)
Q Consensus 5 ~~L~~L~l~~~~~~~~----lp~~i~~L~~L~~L~~~~~~~~~~-~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~-- 77 (814)
.+++.|||+++. +.. +|+.+++|+.|+.+ +.+.... ..+..++++++|+ .|+++... .....+.
T Consensus 50 ~~v~~L~L~~~~-l~g~~~~l~~~l~~L~~L~~l---~~~~~~~~~l~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~ 120 (768)
T 3rgz_A 50 DKVTSIDLSSKP-LNVGFSAVSSSLLSLTGLESL---FLSNSHINGSVSGFKCSASLT-SLDLSRNS----LSGPVTTLT 120 (768)
T ss_dssp TEEEEEECTTSC-CCEEHHHHHHHTTTCTTCCEE---ECTTSCEEECCCCCCCCTTCC-EEECCSSE----EEEEGGGGG
T ss_pred CcEEEEECCCCC-cCCccCccChhHhccCccccc---CCcCCCcCCCchhhccCCCCC-EEECCCCc----CCCcCCChH
Confidence 357788888887 544 77778877777666 3332221 1234677888888 88776533 2222333
Q ss_pred hcccCCCcceeEEEEecCCCCCCCcchhhHHhhhcC-CCCCcCcccEEEeeeCCCCCCc-c---ccCCCCCcccEEEEec
Q 035579 78 QLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLDM-LKPHKNLEQFGICGYGGTKFPT-W---LGDCSFSNLVTLKFKD 152 (814)
Q Consensus 78 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~p~-~---~~~~~l~~L~~L~L~~ 152 (814)
.+..+++|++|++++|..... ++.. +..+++|++|++++|.+...+. . +. .+++|++|++++
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--~l~~L~~L~Ls~ 187 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFP-----------GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISG 187 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECC-----------SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT--CCTTCCEEECCS
T ss_pred HHhCCCCCCEEECcCCccCCc-----------CCHHHhccCCCCCEEECCCCccCCcCChhhhhhc--cCCCCCEEECCC
Confidence 678888888888886654321 2222 3567888888888887654432 2 33 678888888888
Q ss_pred CCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCcccCCcccEEEE
Q 035579 153 CGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHI 232 (814)
Q Consensus 153 ~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l 232 (814)
|.+.+.. ++..+++|++|++++|.....++ .+. .+++|++|+++++ .+.+..+.. +..+++|++|++
T Consensus 188 n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~l~------~l~~L~~L~Ls~n-~l~~~~~~~----l~~l~~L~~L~L 254 (768)
T 3rgz_A 188 NKISGDV-DVSRCVNLEFLDVSSNNFSTGIP-FLG------DCSALQHLDISGN-KLSGDFSRA----ISTCTELKLLNI 254 (768)
T ss_dssp SEEESCC-BCTTCTTCCEEECCSSCCCSCCC-BCT------TCCSCCEEECCSS-CCCSCHHHH----TTTCSSCCEEEC
T ss_pred CcccccC-CcccCCcCCEEECcCCcCCCCCc-ccc------cCCCCCEEECcCC-cCCCcccHH----HhcCCCCCEEEC
Confidence 8755443 34788888888888865433232 222 2788888888883 454433222 567888888888
Q ss_pred ccCCCcccCCCC-CCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCCCCCCCCc-ceEE
Q 035579 233 ISCSKLQGTFPE-HLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKL-EELK 310 (814)
Q Consensus 233 ~~c~~l~~~lp~-~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~ 310 (814)
++|. +++.+|. .+++|+.|++ ++| .+.|.+|..+..+ ..|+
T Consensus 255 s~n~-l~~~~~~~~l~~L~~L~L---------~~n---------------------------~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 255 SSNQ-FVGPIPPLPLKSLQYLSL---------AEN---------------------------KFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CSSC-CEESCCCCCCTTCCEEEC---------CSS---------------------------EEEESCCCCSCTTCTTCS
T ss_pred CCCc-ccCccCccccCCCCEEEC---------cCC---------------------------ccCCccCHHHHhhcCcCC
Confidence 8887 6656664 4556666665 443 2344556666554 6777
Q ss_pred EcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCC-
Q 035579 311 INDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLC- 389 (814)
Q Consensus 311 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~- 389 (814)
.++++++.... ..+..++.+++|++|++++|.....++... +..+ ++|++|++++|.+.+.+|..+..++
T Consensus 298 ~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~----l~~l----~~L~~L~Ls~n~l~~~~p~~l~~l~~ 368 (768)
T 3rgz_A 298 GLDLSGNHFYG-AVPPFFGSCSLLESLALSSNNFSGELPMDT----LLKM----RGLKVLDLSFNEFSGELPESLTNLSA 368 (768)
T ss_dssp EEECCSSEEEE-CCCGGGGGCTTCCEEECCSSEEEEECCHHH----HTTC----TTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred EEECcCCcCCC-ccchHHhcCCCccEEECCCCcccCcCCHHH----HhcC----CCCCEEeCcCCccCccccHHHHhhhc
Confidence 77777776632 445567888999999998874333555432 3333 7899999999888778888887776
Q ss_pred CcceEeeecCCCCcccCC-CCC--CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc-cCcCccce
Q 035579 390 SLREIGIYKCSSLVSFPE-VAL--PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKN 465 (814)
Q Consensus 390 ~L~~L~L~~~~~l~~~~~-~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~ 465 (814)
+|++|++++|.....++. +.. +++|++|++++|...+.+|..+ ..+++|++|++++|.....++.. ..+++|+.
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG--GGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH--hcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 899999988765444443 333 6789999999988555777776 77888999999887533233221 22344555
Q ss_pred eeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcc
Q 035579 466 LQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLE 545 (814)
Q Consensus 466 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 545 (814)
|+++++.... .+|.. ....++|++|++++|...+.+|..+..+++|+
T Consensus 447 L~L~~n~l~~------~~p~~---------------------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 447 LKLWLNMLEG------EIPQE---------------------------LMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp EECCSSCCCS------CCCGG---------------------------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred EECCCCcccC------cCCHH---------------------------HcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 5555543211 22222 22334566666666655555666666666666
Q ss_pred eEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceE------
Q 035579 546 TIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQEL------ 619 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L------ 619 (814)
+|++++|.+.+.+|.+++.+++|++|++++|...+.+|..+..+++|+.|++++|+..+.+|..+.....+..+
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 66666666666666666666666666666665555566666666666666666665555555554443332221
Q ss_pred ----------------------------------------EecC-cc--CccccCCCCCceeEEEecCCcchhhhhhhcc
Q 035579 620 ----------------------------------------TIGG-AL--PSLEEDGLPTNLHSLDIRGNMEIWKSMIERG 656 (814)
Q Consensus 620 ----------------------------------------~l~~-~~--~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 656 (814)
+++. .+ ...+....+++|+.|++++|......+
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip---- 649 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP---- 649 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC----
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC----
Confidence 1111 00 000123346889999999999887655
Q ss_pred cccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCc-ccccccccCCCCCeEEecCCCCCCcc
Q 035579 657 RGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE-RLSSSIVDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 657 ~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l 735 (814)
..++.+++|+.|++++| .....+|... ..+++|++|++++ |++. .+|..+..+++|++|++++|+--..+
T Consensus 650 ~~l~~l~~L~~L~Ls~N-~l~g~ip~~l-------~~L~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHN-DISGSIPDEV-------GDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp GGGGGCTTCCEEECCSS-CCCSCCCGGG-------GGCTTCCEEECCS-SCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred HHHhccccCCEEeCcCC-ccCCCCChHH-------hCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 67899999999999997 2445888887 4789999999999 5555 88989999999999999997666788
Q ss_pred CCCCCcCCccEEeecCCchhh----HhhccCCCccccccCCccEEE
Q 035579 736 PEKGLPSSLLRLSILSCPLIE----EKCRKDGGQYWDLLTHIPFVR 777 (814)
Q Consensus 736 p~~~l~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~~~~i~~~~ 777 (814)
|..+.+.++....+.|||.+. ..|....+++|.+++|++.++
T Consensus 721 P~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 721 PEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 887777778888888887543 257777889999999988653
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-46 Score=436.17 Aligned_cols=581 Identities=19% Similarity=0.147 Sum_probs=416.3
Q ss_pred cccccccCCCceEEEccccCCCChhhhHHhhcccCCCcceeEEEEecCCCCCCCcchhhHHhhhc--CCCCCcCcccEEE
Q 035579 48 PELKLLTYLRGTLHISKLENVTDIGDAKEAQLDVKENLRELLLQWTRSTDGSSSWKAETEMGVLD--MLKPHKNLEQFGI 125 (814)
Q Consensus 48 ~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l 125 (814)
+.+.+|++|+ .++ +.... ... .+..+..+++|++|++++|.... .++. .+..+++|++|++
T Consensus 71 ~~l~~L~~L~-~l~---~~~~~-~~~-l~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~l~~l~~L~~L~L 133 (768)
T 3rgz_A 71 SSLLSLTGLE-SLF---LSNSH-ING-SVSGFKCSASLTSLDLSRNSLSG-----------PVTTLTSLGSCSGLKFLNV 133 (768)
T ss_dssp HHTTTCTTCC-EEE---CTTSC-EEE-CCCCCCCCTTCCEEECCSSEEEE-----------EGGGGGGGGGCTTCCEEEC
T ss_pred hhHhccCccc-ccC---CcCCC-cCC-CchhhccCCCCCEEECCCCcCCC-----------cCCChHHHhCCCCCCEEEC
Confidence 4466666665 444 43332 211 23568999999999999776431 1334 7888999999999
Q ss_pred eeeCCC-CCCccccCCCCCcccEEEEecCCCCCCCCC----CCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcce
Q 035579 126 CGYGGT-KFPTWLGDCSFSNLVTLKFKDCGVCTTLPS----VGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLET 200 (814)
Q Consensus 126 ~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 200 (814)
++|... ..|..+. ..+++|++|++++|.+.+..+. ++++++|++|++++|. +..... ...+++|++
T Consensus 134 s~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~l~~L~~ 204 (768)
T 3rgz_A 134 SSNTLDFPGKVSGG-LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD-------VSRCVNLEF 204 (768)
T ss_dssp CSSEEECCSSCCSC-CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB-------CTTCTTCCE
T ss_pred cCCccCCcCCHHHh-ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC-------cccCCcCCE
Confidence 998744 3444431 1789999999999997655552 7899999999999974 332221 123899999
Q ss_pred eeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCC---CCcccceeeccccceeEEcCCCceeeeccccc
Q 035579 201 LRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEH---LPALEMLVIEGSLCKFEIGGCKKVVWRSATDH 277 (814)
Q Consensus 201 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~---l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~ 277 (814)
|+++++ .+....+. ++.+++|++|++++|. +++.+|.. +++|+.|++ ++|...
T Consensus 205 L~Ls~n-~l~~~~~~-----l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L---------s~n~l~-------- 260 (768)
T 3rgz_A 205 LDVSSN-NFSTGIPF-----LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNI---------SSNQFV-------- 260 (768)
T ss_dssp EECCSS-CCCSCCCB-----CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEEC---------CSSCCE--------
T ss_pred EECcCC-cCCCCCcc-----cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEEC---------CCCccc--------
Confidence 999994 45543332 5789999999999998 77666654 445555555 666432
Q ss_pred CCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHH
Q 035579 278 LGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQ 357 (814)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 357 (814)
|.+|.. .++.|+.++++++......+..+...+++|++|++++|.....++.. +
T Consensus 261 -------------------~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-----~ 314 (768)
T 3rgz_A 261 -------------------GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-----F 314 (768)
T ss_dssp -------------------ESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-----G
T ss_pred -------------------CccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-----H
Confidence 222322 66677777888887754455555455699999999997433333332 4
Q ss_pred HHhhhccccccEEEeeccCCccccccc-cCCCCCcceEeeecCCCCcccCC-CCCCC-CCcEEEecccCCCCCCchhhhc
Q 035579 358 QQLCELSCRLEYLILSCCEGLVKLPQS-SLSLCSLREIGIYKCSSLVSFPE-VALPS-KLEKIHIGACDALKSLPEAWMC 434 (814)
Q Consensus 358 ~~l~~~~~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~-~~~~~-~L~~L~l~~~~~l~~~~~~~~~ 434 (814)
..+ ++|++|++++|.+.+.+|.. +..+++|++|++++|.....+|. +..++ +|+.|++++|...+.++..+..
T Consensus 315 ~~l----~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 315 GSC----SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGC----TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred hcC----CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 444 89999999999988788875 89999999999999865545653 34455 9999999999966667766532
Q ss_pred CCCCCccEEEEecCCCCcccccc-cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCccccccc
Q 035579 435 DTNSSLEILYIEGCRSLTYIAAV-QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSK 513 (814)
Q Consensus 435 ~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 513 (814)
..+++|++|++++|.....++.. ..+++|+.|+++++ ...+.+...
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N---------------------------------~l~~~~p~~ 437 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN---------------------------------YLSGTIPSS 437 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS---------------------------------EEESCCCGG
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC---------------------------------cccCcccHH
Confidence 33789999999997633333321 22344555554444 322221222
Q ss_pred CCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcc
Q 035579 514 NELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLS 593 (814)
Q Consensus 514 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 593 (814)
....++|+.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.....+|..+..+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 33446899999999988889999999999999999999999999999999999999999999977778898899999999
Q ss_pred eEeeccccccccccccccCCCCcceEEecC-ccC-cccc-CCCCC---------ceeEEEecC-----------------
Q 035579 594 ELRIFQCERLEALPKGLHNLTSLQELTIGG-ALP-SLEE-DGLPT---------NLHSLDIRG----------------- 644 (814)
Q Consensus 594 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~-~l~~-~~~~~---------~L~~L~l~~----------------- 644 (814)
+|++++|...+.+|..+.++++|+.|++++ .+. .+|. ..... ..+..++.+
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 999999987789999999999999999998 332 2222 11111 111122211
Q ss_pred --------------------CcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEecc
Q 035579 645 --------------------NMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR 704 (814)
Q Consensus 645 --------------------n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 704 (814)
+...... +..+..+++|+.|++++|. ....+|... ..+++|+.|++++
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~----~~~~~~l~~L~~LdLs~N~-l~g~ip~~l-------~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHT----SPTFDNNGSMMFLDMSYNM-LSGYIPKEI-------GSMPYLFILNLGH 665 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEEC----CCSCSSSBCCCEEECCSSC-CBSCCCGGG-------GGCTTCCEEECCS
T ss_pred cccchhhhccccccccccccceecccC----chhhhccccccEEECcCCc-ccccCCHHH-------hccccCCEEeCcC
Confidence 2111111 2457888999999999962 445788877 4789999999999
Q ss_pred CCCCc-ccccccccCCCCCeEEecCCCCCCccCCCC-CcCCccEEeecCCch
Q 035579 705 FPNLE-RLSSSIVDLQNLTELCLRDCPKLKYFPEKG-LPSSLLRLSILSCPL 754 (814)
Q Consensus 705 ~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-l~~~L~~L~i~~c~~ 754 (814)
|.++ .+|..++.+++|+.|++++|+--..+|... -+++|++|++++|+-
T Consensus 666 -N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 666 -NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp -SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred -CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 5565 899999999999999999964334666531 278999999999863
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=385.30 Aligned_cols=373 Identities=17% Similarity=0.087 Sum_probs=264.7
Q ss_pred CCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCC
Q 035579 331 ICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVA 409 (814)
Q Consensus 331 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~ 409 (814)
.++|+.|+++++ .+..+.+..+ ..+ ..++|++|++++|.+.+..|..+..+++|++|++++|......+ .+.
T Consensus 221 ~~~L~~L~L~~n-~l~~~~~~~~----~~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (680)
T 1ziw_A 221 NTSIRNLSLSNS-QLSTTSNTTF----LGL--KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293 (680)
T ss_dssp TSCCCEEECTTS-CCCEECTTTT----GGG--GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT
T ss_pred hccccEEEccCC-cccccChhHh----hcc--CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc
Confidence 477888888885 4554443322 111 00348888888888766666777888888888888865443333 355
Q ss_pred CCCCCcEEEecccCCCC-----CCch---hhhcCCCCCccEEEEecCCCCcccccc--cCcCccceeeeccccCCccccc
Q 035579 410 LPSKLEKIHIGACDALK-----SLPE---AWMCDTNSSLEILYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTV 479 (814)
Q Consensus 410 ~~~~L~~L~l~~~~~l~-----~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~ 479 (814)
.+++|+.|++++|.... .+|. ..+ ..+++|++|++++|. +..++.. ..++
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~l~------------------ 353 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDND-IPGIKSNMFTGLI------------------ 353 (680)
T ss_dssp TCTTCCEEECTTCBCCC------CCEECTTTT-TTCTTCCEEECCSCC-BCCCCTTTTTTCT------------------
T ss_pred CCCCccEEeccchhhhcccccccccccChhhc-ccCCCCCEEECCCCc-cCCCChhHhcccc------------------
Confidence 67888888887764221 2221 111 566777777777754 2222211 1223
Q ss_pred ccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCC----cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCc
Q 035579 480 EEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNEL----PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENL 555 (814)
Q Consensus 480 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 555 (814)
+|++|+++++..-....+...+ .++|+.|++++|...+..|..+..+++|+.|++++|.+.
T Consensus 354 ---------------~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 354 ---------------NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp ---------------TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred ---------------CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 4455555443211110111111 147899999998888888888999999999999999998
Q ss_pred cccc-ccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccc--cccccccccCCCCcceEEecC-ccCcccc-
Q 035579 556 KILP-SGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCER--LEALPKGLHNLTSLQELTIGG-ALPSLEE- 630 (814)
Q Consensus 556 ~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~--l~~lp~~~~~l~~L~~L~l~~-~~~~l~~- 630 (814)
+.+| ..+..+++|++|++++|......+..+..+++|++|++++|.. ...+|..+..+++|+.|++++ .+..++.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 7665 6788999999999999854444455778889999999999853 256788899999999999998 7777765
Q ss_pred -CCCCCceeEEEecCCcchhhhhhh----cccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccC
Q 035579 631 -DGLPTNLHSLDIRGNMEIWKSMIE----RGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRF 705 (814)
Q Consensus 631 -~~~~~~L~~L~l~~n~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (814)
...+++|++|++++|......... ....+..+++|++|++++| .+..+|...+ ..+++|++|++++
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~------~~l~~L~~L~Ls~- 569 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVF------KDLFELKIIDLGL- 569 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHc------ccccCcceeECCC-
Confidence 455789999999999876643211 1123789999999999998 7778887653 5789999999999
Q ss_pred CCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC---cCCccEEeecCCchh
Q 035579 706 PNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL---PSSLLRLSILSCPLI 755 (814)
Q Consensus 706 ~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L~~L~i~~c~~l 755 (814)
|.++.+|. .+..+++|+.|++++| +++.++...+ +++|+++++++||..
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 89999988 4689999999999995 8988887543 589999999998843
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=379.94 Aligned_cols=584 Identities=16% Similarity=0.150 Sum_probs=360.4
Q ss_pred cceeecCCCCccccccccCCCCCCCCccCceEEcCCCC--CCccccccccCCCceEEEccccCCCChhhhHHhhcccCCC
Q 035579 7 LHHLNNSNTDSLEEMPLGIGKLTCLQTLSNFVVGKDSG--SRLPELKLLTYLRGTLHISKLENVTDIGDAKEAQLDVKEN 84 (814)
Q Consensus 7 L~~L~l~~~~~~~~lp~~i~~L~~L~~L~~~~~~~~~~--~~~~~l~~l~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~ 84 (814)
-+++|+++++ ++.+|..+. .++++| +...... .....+.++++|+ .|++.+.. .....+..+..+++
T Consensus 6 ~~~~~cs~~~-L~~ip~~~~--~~l~~L---~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~ 74 (680)
T 1ziw_A 6 HEVADCSHLK-LTQVPDDLP--TNITVL---NLTHNQLRRLPAANFTRYSQLT-SLDVGFNT----ISKLEPELCQKLPM 74 (680)
T ss_dssp SSEEECCSSC-CSSCCSCSC--TTCSEE---ECCSSCCCCCCGGGGGGGTTCS-EEECCSSC----CCCCCTTHHHHCTT
T ss_pred CCeeECCCCC-ccccccccC--CCCcEE---ECCCCCCCCcCHHHHhCCCcCc-EEECCCCc----cCccCHHHHhcccC
Confidence 3678999998 999998775 677777 4433332 2223366677777 76665422 22222334555666
Q ss_pred cceeEEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeCCCCCC-ccccCCCCCcccEEEEecCCCCCCCC-CC
Q 035579 85 LRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKFP-TWLGDCSFSNLVTLKFKDCGVCTTLP-SV 162 (814)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l 162 (814)
|++|++++|..... ....+..+++|++|++++|.+..+| ..++ .+++|++|++++|......+ .+
T Consensus 75 L~~L~L~~n~l~~l-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~ 141 (680)
T 1ziw_A 75 LKVLNLQHNELSQL-----------SDKTFAFCTNLTELHLMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQ 141 (680)
T ss_dssp CCEEECCSSCCCCC-----------CTTTTTTCTTCSEEECCSSCCCCCCSCTTT--TCTTCCEEECCSSCCSCCCCCSS
T ss_pred cCEEECCCCccCcc-----------ChhhhccCCCCCEEECCCCccCccChhHcc--ccCCCCEEECCCCcccccCchhh
Confidence 66666655543321 1123555566666666666555444 2333 45666666666665443333 25
Q ss_pred CCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCC
Q 035579 163 GQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTF 242 (814)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~l 242 (814)
+++++|++|++++|. ++.++....+. ..+++|++|++++ +.++...+.. +..+++|+.|+++++. +.+..
T Consensus 142 ~~l~~L~~L~L~~n~-l~~~~~~~~~~---~~~~~L~~L~L~~-n~l~~~~~~~----~~~l~~L~~L~l~~~~-l~~~~ 211 (680)
T 1ziw_A 142 VQLENLQELLLSNNK-IQALKSEELDI---FANSSLKKLELSS-NQIKEFSPGC----FHAIGRLFGLFLNNVQ-LGPSL 211 (680)
T ss_dssp SCCTTCCEEECCSSC-CCCBCHHHHGG---GTTCEESEEECTT-CCCCCBCTTG----GGGSSEECEEECTTCC-CHHHH
T ss_pred cccccCCEEEccCCc-ccccCHHHhhc---cccccccEEECCC-CcccccChhh----hhhhhhhhhhhccccc-cChhh
Confidence 556666666665542 22222211110 0034455555544 2233322211 2334444444444443 21000
Q ss_pred CCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhcc
Q 035579 243 PEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWK 322 (814)
Q Consensus 243 p~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~ 322 (814)
...+ +..+ ....|+.++++++... .
T Consensus 212 ~~~~-----------------------------------------------------~~~l-~~~~L~~L~L~~n~l~-~ 236 (680)
T 1ziw_A 212 TEKL-----------------------------------------------------CLEL-ANTSIRNLSLSNSQLS-T 236 (680)
T ss_dssp HHHH-----------------------------------------------------HHHH-TTSCCCEEECTTSCCC-E
T ss_pred HHHH-----------------------------------------------------HHHh-hhccccEEEccCCccc-c
Confidence 0000 0000 0112222233333321 1
Q ss_pred chhhhhhcCC--CCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCC
Q 035579 323 SHNELLQDIC--SLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCS 400 (814)
Q Consensus 323 ~~~~~~~~l~--~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 400 (814)
..+..+..++ +|++|++++| .+..+++.. +..+ ++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDS----FAWL----PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred cChhHhhccCcCCCCEEECCCC-CcCccCccc----ccCc----ccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 2233444554 4999999886 455555432 3333 899999999999888888889999999999998753
Q ss_pred CCc-----ccC-----CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCC-CcccccccCcCccceeeec
Q 035579 401 SLV-----SFP-----EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRS-LTYIAAVQLPSSLKNLQIH 469 (814)
Q Consensus 401 ~l~-----~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~L~~L~l~ 469 (814)
... .+| .+..+++|++|++++|. +..++...+ ..+++|++|++++|.. +..++...+..
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~-------- 377 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVS-------- 377 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGG--------
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhcc--------
Confidence 221 223 35568999999999998 444544433 8899999999998752 22222211110
Q ss_pred cccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhh-HhhcCCCCcceEe
Q 035579 470 GCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIA-ERLDNNTSLETIG 548 (814)
Q Consensus 470 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~ 548 (814)
...+.|+.|+++++.............++|+.|++++|...+.++ ..+.++++|++|+
T Consensus 378 ---------------------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 378 ---------------------LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp ---------------------GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred ---------------------cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 000235555555544332212223345678888888887766655 5788899999999
Q ss_pred ecccCCcccccccCCCCCCccEEEecCCCC--ceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-cc
Q 035579 549 INFCENLKILPSGLHNLRQLREITIQRCGN--LVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-AL 625 (814)
Q Consensus 549 L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~--l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~ 625 (814)
+++|.+.+..+..+..+++|++|++++|.. +..+|..+..+++|+.|++++|......+..+..+++|+.|++++ .+
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 999988888888888899999999998843 245677788889999999999854443445688899999999988 55
Q ss_pred Ccccc----------CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCC
Q 035579 626 PSLEE----------DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 626 ~~l~~----------~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~ 695 (814)
..++. ...+++|++|++++|.+...+. ..|..+++|++|++++| .+..+|...+ ..++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~~------~~l~ 584 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV----EVFKDLFELKIIDLGLN--NLNTLPASVF------NNQV 584 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCT
T ss_pred cccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH----HHcccccCcceeECCCC--CCCcCCHhHh------CCCC
Confidence 54422 3456899999999998775433 56899999999999998 7888888753 5689
Q ss_pred CcceEEeccCCCCccccc-ccc-cCCCCCeEEecCCCCC
Q 035579 696 SLTDLEIGRFPNLERLSS-SIV-DLQNLTELCLRDCPKL 732 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~-~~~-~l~~L~~L~l~~c~~l 732 (814)
+|+.|++++ |.++.++. .+. .+++|+.|++++|+-.
T Consensus 585 ~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 585 SLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCEEECCC-CcCCccChhHhcccccccCEEEccCCCcc
Confidence 999999999 78998887 455 7899999999997643
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=355.25 Aligned_cols=297 Identities=16% Similarity=0.141 Sum_probs=176.9
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCC-chhhhcCCCCCccE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLEI 442 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~ 442 (814)
.+|+.|++++|.+.+..+..+..+++|++|++++| .++.+| .+..+++|++|++++|. +..+ +..+ ..+++|++
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~ 329 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK-FENLCQISA--SNFPSLTH 329 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCG--GGCTTCSE
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCC-cCcCchhhh--hccCcCCE
Confidence 37888888888876666666888888888888886 455665 35667888888888887 4444 3333 66778888
Q ss_pred EEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE
Q 035579 443 LYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522 (814)
Q Consensus 443 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 522 (814)
|++++|.....++... ....++|++
T Consensus 330 L~l~~n~~~~~~~~~~-------------------------------------------------------~~~l~~L~~ 354 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGC-------------------------------------------------------LENLENLRE 354 (606)
T ss_dssp EECCSCSSCCBCCSST-------------------------------------------------------TTTCTTCCE
T ss_pred EECCCCCcccccchhh-------------------------------------------------------hhccCcCCE
Confidence 8887764222221100 001123444
Q ss_pred EEEeccCCcchh--hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecc
Q 035579 523 LSVYKCSKLESI--AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQ 599 (814)
Q Consensus 523 L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~ 599 (814)
|++++|...... +..+..+++|++|++++|.+.+..|..+..+++|++|++++|......+. .+..+++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 444444433332 44566677777777777777666666677777777777777643333333 255666777777777
Q ss_pred ccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc
Q 035579 600 CERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS 679 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~ 679 (814)
|......|..+..+++| ++|++++|+....... .+..+..+++|++|++++| .+..
T Consensus 435 n~l~~~~~~~~~~l~~L---------------------~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n--~l~~ 490 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPAL---------------------QHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFC--DLSS 490 (606)
T ss_dssp CCCBTTCTTTTTTCTTC---------------------CEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTS--CCCE
T ss_pred CccCCcCHHHHhCCCCC---------------------CEEECCCCCCCccccc-cchhhccCCCccEEECCCC--ccCc
Confidence 64444444445444444 4444444443321110 0134556667777777765 4444
Q ss_pred CCccccccCCCCCCCCCcceEEeccCCCCccc-ccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 680 FPPEDKRLGTALPLPASLTDLEIGRFPNLERL-SSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 680 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
++... +..+++|++|++++ +.++.+ |..+..+++| .|++++| +++.+++..+ +++|+++++++||
T Consensus 491 ~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 IDQHA------FTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTT------TTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cChhh------hccccCCCEEECCC-CccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 43322 14567777777777 445443 3467777777 7777774 5666655433 5677777777776
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=349.11 Aligned_cols=514 Identities=14% Similarity=0.096 Sum_probs=264.4
Q ss_pred cEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcce
Q 035579 122 QFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLET 200 (814)
Q Consensus 122 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 200 (814)
+++.++..++.+|..+. +++++|++++|......+ .++++++|++|++++| .++.+....++ .+++|++
T Consensus 15 ~~~c~~~~l~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~-----~l~~L~~ 84 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWH-----GLHHLSN 84 (606)
T ss_dssp EEECTTSCCSSCCTTSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-----TCTTCCE
T ss_pred ceEccCCCcccCCCCCC----CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhh-----chhhcCE
Confidence 44555555555555432 556666666665433333 3566666666666654 34444332211 1556666
Q ss_pred eeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCC---CCcccceeeccccceeEEcCCCceeeeccccc
Q 035579 201 LRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEH---LPALEMLVIEGSLCKFEIGGCKKVVWRSATDH 277 (814)
Q Consensus 201 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~---l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~ 277 (814)
|++++ +.++...+.. ++.+++|++|++++|. +++..+.. +++|+.|++ ++|.
T Consensus 85 L~Ls~-n~l~~~~p~~----~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L---------~~n~---------- 139 (606)
T 3vq2_A 85 LILTG-NPIQSFSPGS----FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNV---------AHNF---------- 139 (606)
T ss_dssp EECTT-CCCCCCCTTS----STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEEC---------CSSC----------
T ss_pred eECCC-CcccccChhh----cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeC---------CCCc----------
Confidence 66665 2344433222 3456666666666665 44122122 233333333 3332
Q ss_pred CCCCCceeeccCCccccccC-CCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCC----CeEEEecCCCcccchhhH
Q 035579 278 LGSQNSVVCRDTSNQVFLAG-PLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSL----RRLTIRSCPKLQSLVAEE 352 (814)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~l~~l~~~~ 352 (814)
+.+ .+|..|.+++.|+.++++++.... .++..+..+.+| ++|+++++ .++.++...
T Consensus 140 -----------------l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~ 200 (606)
T 3vq2_A 140 -----------------IHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQA 200 (606)
T ss_dssp -----------------CCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTT
T ss_pred -----------------ccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCC-CcceeCccc
Confidence 111 234445555555555665554422 223333444433 36777764 455554432
Q ss_pred HHHHHHHhhhccccccEEEeeccCCc-cccccccCCCCCcceEeeecCC--CCcccC--------CCCCCCCCcEEEecc
Q 035579 353 EKDQQQQLCELSCRLEYLILSCCEGL-VKLPQSSLSLCSLREIGIYKCS--SLVSFP--------EVALPSKLEKIHIGA 421 (814)
Q Consensus 353 ~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~--~l~~~~--------~~~~~~~L~~L~l~~ 421 (814)
+.. .+|++|++++|... ...|..+..+++|+.+++.... ....++ .+. --+++.+++..
T Consensus 201 ~~~---------~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~-~l~l~~l~l~~ 270 (606)
T 3vq2_A 201 FQG---------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC-DVTIDEFRLTY 270 (606)
T ss_dssp TTT---------CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG-GSEEEEEEECC
T ss_pred ccC---------ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh-hccHhheeccc
Confidence 211 46777777777654 3455566667777766664311 111111 011 11455666633
Q ss_pred cCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEee
Q 035579 422 CDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSI 501 (814)
Q Consensus 422 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 501 (814)
+..+......+ ..+++|+.|++++|. ++.++.....++|++|++.+|.. + .+|.. .+++|++|++
T Consensus 271 ~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~------~lp~~-----~l~~L~~L~l 335 (606)
T 3vq2_A 271 TNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-K------QFPTL-----DLPFLKSLTL 335 (606)
T ss_dssp CTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-S------SCCCC-----CCSSCCEEEE
T ss_pred ccccccccccc--ccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-c------ccccC-----CCCccceeec
Confidence 33233322223 667788888888754 45555334445566666666632 3 33321 2234444444
Q ss_pred cCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCccc--ccccCCCCCCccEEEecCCCCc
Q 035579 502 VGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKI--LPSGLHNLRQLREITIQRCGNL 579 (814)
Q Consensus 502 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l 579 (814)
+++.. ...+ .+..+++|++|++++|.+.+. .|..+..+++|++|++++| .+
T Consensus 336 ~~n~~------------------------~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l 388 (606)
T 3vq2_A 336 TMNKG------------------------SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GA 388 (606)
T ss_dssp ESCSS------------------------CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SE
T ss_pred cCCcC------------------------ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-cc
Confidence 44433 2222 244455555555555554433 2444455555555555554 34
Q ss_pred eecCCCCCCCCCcceEeecccccccccc-ccccCCCCcceEEecC-ccCccc--cCCCCCceeEEEecCCcchhhhhhhc
Q 035579 580 VSFPEGGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELTIGG-ALPSLE--EDGLPTNLHSLDIRGNMEIWKSMIER 655 (814)
Q Consensus 580 ~~~~~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~--~~~~~~~L~~L~l~~n~~~~~~~~~~ 655 (814)
..+|..+..+++|++|++++|...+..| ..+..+++|+.|++++ .+.... ....+++|++|++++|.......
T Consensus 389 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--- 465 (606)
T 3vq2_A 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--- 465 (606)
T ss_dssp EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---
T ss_pred ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch---
Confidence 4455445555555555555553333333 3445555555555555 322211 13345667777777776654211
Q ss_pred ccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc-ccccccCCCCCeEEecCCCCCCc
Q 035579 656 GRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL-SSSIVDLQNLTELCLRDCPKLKY 734 (814)
Q Consensus 656 ~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~ 734 (814)
+..+..+++|++|++++| .+..++... +..+++|++|++++ +.++.+ |..+..+++|++|++++| +++.
T Consensus 466 ~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~ 535 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKC--QLEQISWGV------FDTLHRLQLLNMSH-NNLLFLDSSHYNQLYSLSTLDCSFN-RIET 535 (606)
T ss_dssp CSCCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCEEGGGTTTCTTCCEEECTTS-CCCC
T ss_pred HHhhccCCCCCEEECCCC--cCCccChhh------hcccccCCEEECCC-CcCCCcCHHHccCCCcCCEEECCCC-cCcc
Confidence 155777778888888776 555544332 14577888888888 455555 557777888888888885 5777
Q ss_pred cCCCC--CcCCccEEeecCCch
Q 035579 735 FPEKG--LPSSLLRLSILSCPL 754 (814)
Q Consensus 735 lp~~~--l~~~L~~L~i~~c~~ 754 (814)
+|... ++++|++|++++||.
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCC
T ss_pred cCHhHhhhcccCcEEEccCCCc
Confidence 77641 134688888887763
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=343.02 Aligned_cols=389 Identities=15% Similarity=0.093 Sum_probs=251.8
Q ss_pred cceEEEcCCCCcchhccchhhhhhcCCCCC--eEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccc
Q 035579 306 LEELKINDMKEQTYMWKSHNELLQDICSLR--RLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQ 383 (814)
Q Consensus 306 L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~ 383 (814)
++.|+.++++++... ...+..+..+++|+ +|+++++ .+..+++..+.. .+|+.|++++|... +.
T Consensus 152 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~---------~~L~~L~l~~~~~~---~~ 217 (606)
T 3t6q_A 152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDS---------AVFQSLNFGGTQNL---LV 217 (606)
T ss_dssp CTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTC-CCCEECTTTTTT---------CEEEEEECTTCSCH---HH
T ss_pred CcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCC-ccCccChhHhhh---------ccccccccCCchhH---HH
Confidence 445555555555442 23445567777787 6777775 455554432211 57888888887633 33
Q ss_pred ccCCCCCcc--eEeeecCCCCcc--cCC--CCC--CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccc
Q 035579 384 SSLSLCSLR--EIGIYKCSSLVS--FPE--VAL--PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIA 455 (814)
Q Consensus 384 ~~~~l~~L~--~L~L~~~~~l~~--~~~--~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 455 (814)
.+..+.++. .+.+..+..... ++. +.. ..+|+.|++++|. +..++...+ ..+++|++|++++|. ++.+|
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~lp 294 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTF-HCFSGLQELDLTATH-LSELP 294 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTT-TTCTTCSEEECTTSC-CSCCC
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHh-ccccCCCEEeccCCc-cCCCC
Confidence 333333333 333333222111 111 111 1279999999998 666666544 788999999999864 33222
Q ss_pred cccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhh
Q 035579 456 AVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIA 535 (814)
Q Consensus 456 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 535 (814)
..+. ..++|++|++++|......|
T Consensus 295 -----------------------------~~l~---------------------------~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 295 -----------------------------SGLV---------------------------GLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp -----------------------------SSCC---------------------------SCTTCCEEECTTCCCSBGGG
T ss_pred -----------------------------hhhc---------------------------ccccCCEEECccCCcCcCch
Confidence 1111 11245566666665555556
Q ss_pred HhhcCCCCcceEeecccCCcccccc-cCCCCCCccEEEecCCCCceec--CCCCCCCCCcceEeeccccccccccccccC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPS-GLHNLRQLREITIQRCGNLVSF--PEGGLPCAKLSELRIFQCERLEALPKGLHN 612 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 612 (814)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|...... +..+..+++|++|++++|......|..+..
T Consensus 319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 6777778888888888877765544 3777888888888887443332 556777788888888887555555667778
Q ss_pred CCCcceEEecC-ccCcccc---CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc--CCccccc
Q 035579 613 LTSLQELTIGG-ALPSLEE---DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS--FPPEDKR 686 (814)
Q Consensus 613 l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~--i~~~~~~ 686 (814)
+++|+.|++++ .+..... ...+++|++|++++|......+ ..+..+++|++|++++| .+.. ++...
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~~~-- 470 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGN--HFPKGNIQKTN-- 470 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTC--BCGGGEECSSC--
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCC--CCCccccccch--
Confidence 88888888877 4433321 4457899999999998766544 67889999999999997 4433 23211
Q ss_pred cCCCCCCCCCcceEEeccCCCCcccc-cccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCchhhHhhccCC
Q 035579 687 LGTALPLPASLTDLEIGRFPNLERLS-SSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPLIEEKCRKDG 763 (814)
Q Consensus 687 ~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~l~~~~~~~~ 763 (814)
.+..+++|++|++++ +.++.++ ..+..+++|++|++++| +++.++...+ +++| +|++++|.-.. ..
T Consensus 471 ---~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~-----~~ 539 (606)
T 3t6q_A 471 ---SLQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISI-----IL 539 (606)
T ss_dssp ---GGGGCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCC-----CC
T ss_pred ---hhccCCCccEEECCC-CccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccc-----cC
Confidence 125689999999999 5777764 58899999999999996 6777655444 6788 99999985221 11
Q ss_pred CccccccCCccEEEeCCeEeecc
Q 035579 764 GQYWDLLTHIPFVRIDDKWVFGE 786 (814)
Q Consensus 764 ~~~~~~~~~i~~~~~~~~~~~~~ 786 (814)
...+..+..+..+++.++.+...
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECS
T ss_pred HhhcccCCCCCEEeCCCCCcccc
Confidence 22345567788899998877654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=332.89 Aligned_cols=522 Identities=16% Similarity=0.112 Sum_probs=322.4
Q ss_pred ccEEEEecCCCCCCCCC-CCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccccccccccccCCCCCCccc
Q 035579 145 LVTLKFKDCGVCTTLPS-VGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEG 223 (814)
Q Consensus 145 L~~L~L~~~~~~~~l~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 223 (814)
-++++.+++. .+.+|. +. +++++|++++| .++.++...++ .+++|++|++++ +.++...+.. +..
T Consensus 13 ~~~~~c~~~~-l~~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~~~-----~l~~L~~L~Ls~-n~l~~i~~~~----~~~ 78 (606)
T 3vq2_A 13 NITYQCMDQK-LSKVPDDIP--SSTKNIDLSFN-PLKILKSYSFS-----NFSELQWLDLSR-CEIETIEDKA----WHG 78 (606)
T ss_dssp TTEEECTTSC-CSSCCTTSC--TTCCEEECTTS-CCCEECTTTTT-----TCTTCCEEECTT-CCCCEECTTT----TTT
T ss_pred CCceEccCCC-cccCCCCCC--CCcCEEECCCC-CcCEeChhhcc-----CCccCcEEeCCC-CcccccCHHH----hhc
Confidence 3466666665 455554 32 78999999985 45665543322 288999999988 4566654433 568
Q ss_pred CCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCCCCCC
Q 035579 224 FPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRL 303 (814)
Q Consensus 224 l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
+++|++|++++|. +++..|..+.+++.|+. +++++|... +..+..+
T Consensus 79 l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~------L~L~~n~l~---------------------------~~~~~~~ 124 (606)
T 3vq2_A 79 LHHLSNLILTGNP-IQSFSPGSFSGLTSLEN------LVAVETKLA---------------------------SLESFPI 124 (606)
T ss_dssp CTTCCEEECTTCC-CCCCCTTSSTTCTTCCE------EECTTSCCC---------------------------CSSSSCC
T ss_pred hhhcCEeECCCCc-ccccChhhcCCcccCCE------EEccCCccc---------------------------ccccccc
Confidence 8999999999988 76444654443333322 333544321 1122345
Q ss_pred CCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccc
Q 035579 304 PKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQ 383 (814)
Q Consensus 304 ~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~ 383 (814)
.++..|+.++++++.......+..++.+++|++|+++++ .++.+++.. +..+..+...+++|++++|.+....+.
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~----~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVND----LQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTT----THHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhh----hhhhhccccccceeeccCCCcceeCcc
Confidence 555555555555554422222344455555555555553 344333321 111111111133555555544322222
Q ss_pred ccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCC-CCchhhhcCCCCCccEEEEecCCC-----Ccccccc
Q 035579 384 SSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALK-SLPEAWMCDTNSSLEILYIEGCRS-----LTYIAAV 457 (814)
Q Consensus 384 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~l~~L~~L~l~~~~~-----l~~~~~~ 457 (814)
.....+|++|++++ |.... ..+..+ ..+++|+.+++..... +..+..
T Consensus 200 -~~~~~~L~~L~L~~-----------------------n~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~l~~~~~- 252 (606)
T 3vq2_A 200 -AFQGIKLHELTLRG-----------------------NFNSSNIMKTCL--QNLAGLHVHRLILGEFKDERNLEIFEP- 252 (606)
T ss_dssp -TTTTCEEEEEEEES-----------------------CCSCHHHHHHHH--HTTTTCEEEEEEEECCTTSCCCSCCCG-
T ss_pred -cccCceeeeeeccC-----------------------CccchhHHHHHh--ccccccccccccccccccCCcccccCh-
Confidence 22222455555554 43221 122222 3444444444432110 000000
Q ss_pred cCcC-----ccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcc
Q 035579 458 QLPS-----SLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLE 532 (814)
Q Consensus 458 ~~~~-----~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 532 (814)
..+. +++.+.+.....+.. .+|. ...+++|+.++++++.. .. ++.....++|+.|++++|.. +
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~-----~~~~----~~~l~~L~~L~l~~~~~-~~-l~~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSD-----DIVK----FHCLANVSAMSLAGVSI-KY-LEDVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCG-----GGGS----CGGGTTCSEEEEESCCC-CC-CCCCCTTCCCSEEEEESCCC-S
T ss_pred HHhhhhhhccHhheeccccccccc-----cccc----cccCCCCCEEEecCccc-hh-hhhccccccCCEEEcccccC-c
Confidence 0111 233333322222221 1221 23346677888777654 22 33444556899999999887 7
Q ss_pred hhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceec---CCCCCCCCCcceEeecccccccccccc
Q 035579 533 SIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSF---PEGGLPCAKLSELRIFQCERLEALPKG 609 (814)
Q Consensus 533 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~~~~l~~lp~~ 609 (814)
.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++| .+..+ |..+..+++|++|++++| .+..+|..
T Consensus 321 ~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~ 394 (606)
T 3vq2_A 321 QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSAN 394 (606)
T ss_dssp SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCC
T ss_pred ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCC-ccccchhh
Confidence 788 45 9999999999999776654 5778999999999998 44444 666778899999999999 57778889
Q ss_pred ccCCCCcceEEecC-ccCccc---cCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc--CCcc
Q 035579 610 LHNLTSLQELTIGG-ALPSLE---EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS--FPPE 683 (814)
Q Consensus 610 ~~~l~~L~~L~l~~-~~~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~--i~~~ 683 (814)
+..+++|+.|++++ .+...+ ....+++|++|++++|......+ ..+..+++|++|++++| .+.. +|..
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~~~ 468 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGN--SFKDNTLSNV 468 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT----TTTTTCTTCCEEECTTC--EEGGGEECSC
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch----hhhcCCCCCCEEECCCC--cCCCcchHHh
Confidence 99999999999999 544442 34567999999999999877554 67899999999999997 4443 5655
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccc-cccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCchhhHhhc
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLS-SSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPLIEEKCR 760 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~l~~~~~ 760 (814)
. ..+++|++|++++ +.++.++ ..+..+++|++|++++| +++.+++..+ +++|++|++++|. ++.+
T Consensus 469 ~-------~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~-- 536 (606)
T 3vq2_A 469 F-------ANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR-IETS-- 536 (606)
T ss_dssp C-------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC-CCCE--
T ss_pred h-------ccCCCCCEEECCC-CcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc-Cccc--
Confidence 4 5789999999999 5677665 47899999999999996 6777744334 7899999999986 3311
Q ss_pred cCCCccccccC-CccEEEeCCeEeec
Q 035579 761 KDGGQYWDLLT-HIPFVRIDDKWVFG 785 (814)
Q Consensus 761 ~~~~~~~~~~~-~i~~~~~~~~~~~~ 785 (814)
...+..+. .+..+++.++.+..
T Consensus 537 ---p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 537 ---KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp ---ESCGGGSCTTCCEEECCSCCCCC
T ss_pred ---CHhHhhhcccCcEEEccCCCccc
Confidence 11134444 47888888876654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=328.47 Aligned_cols=522 Identities=16% Similarity=0.082 Sum_probs=287.2
Q ss_pred cEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcce
Q 035579 122 QFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLET 200 (814)
Q Consensus 122 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 200 (814)
..+.+++..+.+|. + .+++++|+|++|.+....+ .+.++++|++|++++|..+..++...++ .+++|++
T Consensus 8 ~~dcs~~~L~~vP~-l----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~-----~L~~L~~ 77 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-V----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR-----NLPNLRI 77 (844)
T ss_dssp EEEESCCCSSCCCS-S----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS-----SCTTCCE
T ss_pred EEEccCCCCCCCCC-C----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc-----CCCCCCE
Confidence 34445555666665 2 3567777777776544333 4677777777777776555555333222 2666667
Q ss_pred eeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCCC
Q 035579 201 LRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGS 280 (814)
Q Consensus 201 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~ 280 (814)
|++++ +.+....+.. +..+++|++|++++|. +++.+|..
T Consensus 78 L~Ls~-N~l~~~~p~~----~~~l~~L~~L~Ls~n~-l~~~~~~~----------------------------------- 116 (844)
T 3j0a_A 78 LDLGS-SKIYFLHPDA----FQGLFHLFELRLYFCG-LSDAVLKD----------------------------------- 116 (844)
T ss_dssp EECTT-CCCCEECTTS----SCSCSSCCCEECTTCC-CSSCCSTT-----------------------------------
T ss_pred EECCC-CcCcccCHhH----ccCCcccCEeeCcCCC-CCcccccC-----------------------------------
Confidence 77666 3444443322 4567777777777776 55333321
Q ss_pred CCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHh
Q 035579 281 QNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQL 360 (814)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l 360 (814)
..|.+++.|+.+++++|.+....++..++.+++|++|+++++ .++.+.+..+ ..+
T Consensus 117 --------------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l----~~l 171 (844)
T 3j0a_A 117 --------------------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHEL----EPL 171 (844)
T ss_dssp --------------------CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGG----HHH
T ss_pred --------------------ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHc----ccc
Confidence 001122222222222222211122234566777777777764 3443332221 111
Q ss_pred hhccccccEEEeeccCCccccccccCCCCC------cceEeeecCCCCcccCC----CCCCCCCcEEEecccCC------
Q 035579 361 CELSCRLEYLILSCCEGLVKLPQSSLSLCS------LREIGIYKCSSLVSFPE----VALPSKLEKIHIGACDA------ 424 (814)
Q Consensus 361 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~------L~~L~L~~~~~l~~~~~----~~~~~~L~~L~l~~~~~------ 424 (814)
.. ++|+.|++++|.+.+..|..+..+++ |++|++++|......+. .....+++.+.+..+..
T Consensus 172 ~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 172 QG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 00 56777777777766666655555544 77777776543222221 11234556666552210
Q ss_pred --CCCCchhhhcCC--CCCccEEEEecCCCCcccccc--cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccE
Q 035579 425 --LKSLPEAWMCDT--NSSLEILYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEH 498 (814)
Q Consensus 425 --l~~~~~~~~~~~--l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 498 (814)
+.......+ .+ .++|++|++++|. +..++.. ..+++|+.|+++++. +.. ..|..+ ..+++|++
T Consensus 250 ~~l~~~~~~~f-~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~-----~~~~~~---~~l~~L~~ 318 (844)
T 3j0a_A 250 HNIKDPDQNTF-AGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INK-----IADEAF---YGLDNLQV 318 (844)
T ss_dssp SSSTTGGGTTT-TTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCC-CCE-----ECTTTT---TTCSSCCE
T ss_pred cccCCCChhhh-hccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCc-CCC-----CChHHh---cCCCCCCE
Confidence 111111111 11 2556666666643 2222211 233455555555542 211 111111 12345777
Q ss_pred EeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCC
Q 035579 499 LSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGN 578 (814)
Q Consensus 499 L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~ 578 (814)
|+++++.............++|+.|++++|......+..+..+++|++|++++|.+.+. ..+++|+.|++++| .
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N-~ 392 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGN-K 392 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESC-C
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCC-C
Confidence 77776643322122334455777777777765555555677777777777777766532 23667777777776 4
Q ss_pred ceecCCCCCCCCCcceEeeccccccccccc--cccCCCCcceEEecC-ccCcccc---CCCCCceeEEEecCCcchhhhh
Q 035579 579 LVSFPEGGLPCAKLSELRIFQCERLEALPK--GLHNLTSLQELTIGG-ALPSLEE---DGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 579 l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
+..+|.. ..+++.|++++| .+..++. .+.++++|+.|++++ .+...+. ...+++|+.|++++|.......
T Consensus 393 l~~l~~~---~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 393 LVTLPKI---NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp CCCCCCC---CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred ccccccc---ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 4455543 346777777777 4444432 345778888888888 5544332 2335788888888887653221
Q ss_pred h-hcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCC
Q 035579 653 I-ERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPK 731 (814)
Q Consensus 653 ~-~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 731 (814)
. ..+..+..+++|+.|++++| .+..++...+ ..+++|++|++++ |.++.+|..... ++|+.|++++ ++
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls~-N~ 537 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHN--YLNSLPPGVF------SHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDISR-NQ 537 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHH--HHTTCCTTSS------SSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEEE-EC
T ss_pred cccchhhhcCcccccEEECCCC--cccccChhHc------cchhhhheeECCC-CCCCccChhhhh-ccccEEECCC-Cc
Confidence 1 01135777888888888887 6667766542 5678888888888 678887763332 7888888888 46
Q ss_pred CCccCCCCCcCCccEEeecCCch
Q 035579 732 LKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 732 l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
++.+++.. ..+|+.+++.++|.
T Consensus 538 l~~~~~~~-~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 538 LLAPNPDV-FVSLSVLDITHNKF 559 (844)
T ss_dssp CCCCCSCC-CSSCCEEEEEEECC
T ss_pred CCCCChhH-hCCcCEEEecCCCc
Confidence 77666543 45788888888663
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=322.77 Aligned_cols=280 Identities=15% Similarity=0.056 Sum_probs=184.5
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCC-chhhhcCCCCCccE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLEI 442 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~ 442 (814)
++|+.|++++|.+.+..+..+..+++|++|++++|......+ .+..+++|++|++++|. +..+ +..+ ..+++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNF--YGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSC--SSCTTCCE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHh--cCCCCCCE
Confidence 567777777776665556666667777777777653322222 24456677777777776 3333 3333 66677777
Q ss_pred EEEecCCCCcccccc--cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccc
Q 035579 443 LYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATL 520 (814)
Q Consensus 443 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 520 (814)
|++++| .+..++.. ..+++|+.|+++++. ++ .++. +++|+.++++++... . ++. ...++
T Consensus 343 L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~------~i~~-------~~~L~~L~l~~N~l~-~-l~~--~~~~l 403 (844)
T 3j0a_A 343 IDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LT------TIHF-------IPSIPDIFLSGNKLV-T-LPK--INLTA 403 (844)
T ss_dssp EECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SC------CCSS-------CCSCSEEEEESCCCC-C-CCC--CCTTC
T ss_pred EECCCC-CCCccChhhhcCCCCCCEEECCCCC-CC------cccC-------CCCcchhccCCCCcc-c-ccc--ccccc
Confidence 777765 34444432 234567777766652 22 1221 245777777775533 2 221 23468
Q ss_pred cEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccc-cCCCCCCccEEEecCCCCc-----eecCCCCCCCCCcc
Q 035579 521 ESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPS-GLHNLRQLREITIQRCGNL-----VSFPEGGLPCAKLS 593 (814)
Q Consensus 521 ~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~l-----~~~~~~~~~l~~L~ 593 (814)
+.|++++|..... .+..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|... ...+..+..+++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 8888888765542 344567899999999999988765433 3556889999999998432 12234567788999
Q ss_pred eEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 594 ELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 594 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
.|++++|......|..+..+++|+.|++++ .+..++.....++|+.|++++|.+....+ . .+.+|+.|++++
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~----~---~~~~L~~l~l~~ 556 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNP----D---VFVSLSVLDITH 556 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCS----C---CCSSCCEEEEEE
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCCh----h---HhCCcCEEEecC
Confidence 999999955555556688899999999998 78877776666889999999988766543 2 345788888888
Q ss_pred C
Q 035579 673 C 673 (814)
Q Consensus 673 ~ 673 (814)
|
T Consensus 557 N 557 (844)
T 3j0a_A 557 N 557 (844)
T ss_dssp E
T ss_pred C
Confidence 6
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=311.02 Aligned_cols=471 Identities=14% Similarity=0.144 Sum_probs=271.6
Q ss_pred EEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceee
Q 035579 124 GICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLR 202 (814)
Q Consensus 124 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 202 (814)
+.+++.++.+|..+ .++|++|++++|.+....| .++++++|++|++++| .++.++...++ .+++|++|+
T Consensus 11 ~~~~~~l~~ip~~~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~-----~l~~L~~L~ 80 (549)
T 2z81_A 11 DGRSRSFTSIPSGL----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFY-----SLGSLEHLD 80 (549)
T ss_dssp ECTTSCCSSCCSCC----CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTT-----TCTTCCEEE
T ss_pred ECCCCccccccccC----CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhcc-----ccccCCEEE
Confidence 44455667777654 3678888888888544444 4788888888888886 44444432222 266677777
Q ss_pred ccccccccccccCCCCCCcccCCcccEEEEccCCCccc-CCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCC
Q 035579 203 FENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQG-TFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQ 281 (814)
Q Consensus 203 l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~ 281 (814)
+++ +.+++..... ++.+++|++|++++|. +++ ..|.
T Consensus 81 Ls~-n~l~~~~~~~----~~~l~~L~~L~Ls~n~-l~~~~~~~------------------------------------- 117 (549)
T 2z81_A 81 LSD-NHLSSLSSSW----FGPLSSLKYLNLMGNP-YQTLGVTS------------------------------------- 117 (549)
T ss_dssp CTT-SCCCSCCHHH----HTTCTTCCEEECTTCC-CSSSCSSC-------------------------------------
T ss_pred CCC-CccCccCHHH----hccCCCCcEEECCCCc-ccccchhh-------------------------------------
Confidence 766 3444433221 3466777777777766 441 1111
Q ss_pred CceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhh
Q 035579 282 NSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLC 361 (814)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~ 361 (814)
.+..+++|++|++++|..+..++... +..+
T Consensus 118 ---------------------------------------------~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~l- 147 (549)
T 2z81_A 118 ---------------------------------------------LFPNLTNLQTLRIGNVETFSEIRRID----FAGL- 147 (549)
T ss_dssp ---------------------------------------------SCTTCTTCCEEEEEESSSCCEECTTT----TTTC-
T ss_pred ---------------------------------------------hhhccCCccEEECCCCccccccCHhh----hhcc-
Confidence 12344455555555544344443221 1222
Q ss_pred hccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCCc---hhhhcCC
Q 035579 362 ELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSLP---EAWMCDT 436 (814)
Q Consensus 362 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~ 436 (814)
++|++|++++|.+.+..|..+..+++|++|++++|. ...++. ...+++|++|++++|. +..++ ..+. ..
T Consensus 148 ---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-~~ 221 (549)
T 2z81_A 148 ---TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVD-EV 221 (549)
T ss_dssp ---CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSC-CC
T ss_pred ---cccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc-cccccccccchh-hh
Confidence 555555555555555555555555555555555532 222221 1224555555555555 22221 1111 33
Q ss_pred CCCccEEEEecCCCCcccc-----cccCcCccceeeeccccCCcccccccCCCC-CCCCCCCCCCccEEeecCCCCcccc
Q 035579 437 NSSLEILYIEGCRSLTYIA-----AVQLPSSLKNLQIHGCYNIKTLTVEEGIPS-SSSSRYTSSILEHLSIVGCPSLTCI 510 (814)
Q Consensus 437 l~~L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~ 510 (814)
+++|+.|++++|......+ ......+++.+++.+|...... .++. .......+.+++.+.+.++..-...
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG----DFNPSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS----CCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc----cccccchhhhhhhcccccccccccccchhh
Confidence 4556666665543111100 0122344555555555311100 0100 0111122356777777665322110
Q ss_pred -cc----cCCCcccccEEEEeccCCcchhhHhh-cCCCCcceEeecccCCccccc---ccCCCCCCccEEEecCCCCcee
Q 035579 511 -FS----KNELPATLESLSVYKCSKLESIAERL-DNNTSLETIGINFCENLKILP---SGLHNLRQLREITIQRCGNLVS 581 (814)
Q Consensus 511 -~~----~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~---~~~~~l~~L~~L~l~~~~~l~~ 581 (814)
+. .....++|+.|++++|.. ..+|..+ ..+++|++|++++|.+.+..| ..++.+++|++|++++| .++.
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 375 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRS 375 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCC
T ss_pred hcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccc
Confidence 00 012235789999998764 4666655 578999999999999887653 34778899999999998 5555
Q ss_pred cC---CCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhccc
Q 035579 582 FP---EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGR 657 (814)
Q Consensus 582 ~~---~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 657 (814)
++ ..+..+++|++|++++| .++.+|..+..+++|++|++++ .+..++.. .+++|++|++++|.+...
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~Ls~N~l~~~------- 446 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-IPQTLEVLDVSNNNLDSF------- 446 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-SCTTCSEEECCSSCCSCC-------
T ss_pred cccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccch-hcCCceEEECCCCChhhh-------
Confidence 54 23667889999999988 6668888888888888888888 66665432 246788888888865432
Q ss_pred ccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCC
Q 035579 658 GFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCP 730 (814)
Q Consensus 658 ~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 730 (814)
...+++|++|++++| .+..+|... .+++|++|++++ |.++.+++ .+..+++|+.|++++|+
T Consensus 447 -~~~l~~L~~L~Ls~N--~l~~ip~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 447 -SLFLPRLQELYISRN--KLKTLPDAS--------LFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp -CCCCTTCCEEECCSS--CCSSCCCGG--------GCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred -cccCChhcEEECCCC--ccCcCCCcc--------cCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCC
Confidence 246677777777776 566676632 467777777777 56666655 46777777777777764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-31 Score=301.05 Aligned_cols=497 Identities=15% Similarity=0.144 Sum_probs=246.1
Q ss_pred EEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceee
Q 035579 124 GICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLR 202 (814)
Q Consensus 124 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 202 (814)
+.++.....+|..+. +++++|++++|......+ .+.++++|++|++++| .++.++...++ .+++|++|+
T Consensus 13 ~c~~~~l~~ip~~l~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~-----~l~~L~~L~ 82 (570)
T 2z63_A 13 QCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ-----SLSHLSTLI 82 (570)
T ss_dssp ECCSSCCSSCCSSSC----SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTT-----TCTTCCEEE
T ss_pred EeCCCCccccCCCcc----ccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCccccc-----CchhCCEEe
Confidence 333334445554332 356666666665333222 3556666666666654 34444332221 155666666
Q ss_pred ccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCC----CCCcccceeeccccceeEEcCCCceeeecccccC
Q 035579 203 FENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPE----HLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHL 278 (814)
Q Consensus 203 l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~----~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~ 278 (814)
+++ +.++...+.. +..+++|++|++++|. ++ .++. .+++|+.|++ ++|.
T Consensus 83 L~~-n~l~~~~~~~----~~~l~~L~~L~L~~n~-l~-~l~~~~~~~l~~L~~L~L---------~~n~----------- 135 (570)
T 2z63_A 83 LTG-NPIQSLALGA----FSGLSSLQKLVAVETN-LA-SLENFPIGHLKTLKELNV---------AHNL----------- 135 (570)
T ss_dssp CTT-CCCCEECTTT----TTTCTTCCEEECTTSC-CC-CSTTCSCTTCTTCCEEEC---------CSSC-----------
T ss_pred CcC-CcCCccCHhh----hcCccccccccccccc-cc-cCCCccccccccccEEec---------CCCc-----------
Confidence 655 2344333222 3456666666666665 44 3322 2223333333 2221
Q ss_pred CCCCceeeccCCccccccC-CCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCC----CeEEEecCCCcccchhhHH
Q 035579 279 GSQNSVVCRDTSNQVFLAG-PLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSL----RRLTIRSCPKLQSLVAEEE 353 (814)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~l~~l~~~~~ 353 (814)
+.+ .+|..|.++++|+.++++++... ..++..+..+++| +.|+++++ .+..+++..+
T Consensus 136 ----------------l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n-~l~~~~~~~~ 197 (570)
T 2z63_A 136 ----------------IQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF 197 (570)
T ss_dssp ----------------CCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTC-CCCEECTTTT
T ss_pred ----------------cceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccCCC-CceecCHHHh
Confidence 111 12334455555555555555442 2233344555555 56666664 4444443321
Q ss_pred HHHHHHhhhccccccEEEeeccCCc-cccccccCCCCCcceEeeecC-----CCCcccCC--CCCC--CCCcEEEeccc-
Q 035579 354 KDQQQQLCELSCRLEYLILSCCEGL-VKLPQSSLSLCSLREIGIYKC-----SSLVSFPE--VALP--SKLEKIHIGAC- 422 (814)
Q Consensus 354 ~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~-----~~l~~~~~--~~~~--~~L~~L~l~~~- 422 (814)
.. .+|++|++++|... ..++..+..+++++.+.+... ..+..++. +..+ ..++.++++++
T Consensus 198 ~~---------~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 198 KE---------IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp TT---------CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred cc---------CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 10 35666666665322 123334444555544433210 11112221 1111 13566666666
Q ss_pred CCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeec
Q 035579 423 DALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIV 502 (814)
Q Consensus 423 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 502 (814)
......+..+ ..+++|++|++++|. ++.++......+|+.|++.+|. +. .+|.. .+++|++|+++
T Consensus 269 ~~~~~~~~~~--~~l~~L~~L~l~~~~-l~~l~~~~~~~~L~~L~l~~n~-~~------~l~~~-----~l~~L~~L~l~ 333 (570)
T 2z63_A 269 YYLDDIIDLF--NCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCK-FG------QFPTL-----KLKSLKRLTFT 333 (570)
T ss_dssp EEESCSTTTT--GGGTTCSEEEEESCE-ECSCCBCCSCCCCSEEEEESCB-CS------SCCBC-----BCSSCCEEEEE
T ss_pred hhhhhchhhh--cCcCcccEEEecCcc-chhhhhhhccCCccEEeeccCc-cc------ccCcc-----cccccCEEeCc
Confidence 3223344444 667888888888864 4445443211267777777663 22 22221 12345555555
Q ss_pred CCCCcccccccCCCcccccEEEEeccCCcchh--hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCce
Q 035579 503 GCPSLTCIFSKNELPATLESLSVYKCSKLESI--AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLV 580 (814)
Q Consensus 503 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 580 (814)
++..... ++. ..+++|+.|++++|...... +..+..+++|++|++++|.+.+..+. +..+++|++|++++|....
T Consensus 334 ~n~~~~~-~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 334 SNKGGNA-FSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp SCBSCCB-CCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred CCccccc-ccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 5443222 111 23334555555554433221 34444555555555555544433322 4445555555555542221
Q ss_pred ecC-CCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhccccc
Q 035579 581 SFP-EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGF 659 (814)
Q Consensus 581 ~~~-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 659 (814)
..+ ..+..+++|++|++++|......|..+ ..+++|++|++++|....... |..+
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------------------~~l~~L~~L~l~~n~l~~~~~---p~~~ 466 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---------------------NGLSSLEVLKMAGNSFQENFL---PDIF 466 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCTTTT---------------------TTCTTCCEEECTTCEEGGGEE---CSCC
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccchhhh---------------------hcCCcCcEEECcCCcCccccc---hhhh
Confidence 112 133444455555555543333333333 335667777777776652211 1567
Q ss_pred CCCCcccEEEEecCCCCCccC-CccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccC
Q 035579 660 HRFSSLRHLTIDGCDDDMVSF-PPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFP 736 (814)
Q Consensus 660 ~~l~~L~~L~l~~~~~~l~~i-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp 736 (814)
..+++|++|++++| .+..+ |... ..+++|++|++++ +.++.++. .+..+++|+.|++++|+--...|
T Consensus 467 ~~l~~L~~L~l~~n--~l~~~~~~~~-------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 467 TELRNLTFLDLSQC--QLEQLSPTAF-------NSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCTTCCEEECTTS--CCCEECTTTT-------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcccCCCEEECCCC--ccccCChhhh-------hcccCCCEEeCCC-CcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 88888888888886 55555 4333 4678899999998 57777765 67889999999999976444444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-31 Score=299.94 Aligned_cols=391 Identities=16% Similarity=0.169 Sum_probs=282.4
Q ss_pred hhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccc-cccCCCCCcceEeeecCCCC
Q 035579 324 HNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLP-QSSLSLCSLREIGIYKCSSL 402 (814)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~l 402 (814)
++..+..+++|++|++++| .++.+... ..+..+ ++|++|++++|...+.+| ..+..+++|++|++++|...
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~~l----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGN-PYQTLGVT---SLFPNL----TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CHHHHTTCTTCCEEECTTC-CCSSSCSS---CSCTTC----TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CHHHhccCCCCcEEECCCC-cccccchh---hhhhcc----CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 3444678888999999886 45433211 013333 899999999998667666 57899999999999997655
Q ss_pred cccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCccc-----ccccCcCccceeeeccccCCcc
Q 035579 403 VSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYI-----AAVQLPSSLKNLQIHGCYNIKT 476 (814)
Q Consensus 403 ~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~~L~~L~l~~~~~l~~ 476 (814)
...| .+..+++|+.|++++|. ...++..++ ..+++|++|++++|. ++.+ +....+++|+.|++.++. +..
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 237 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFA-DILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV-LTD 237 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSB-STTHHHHHH-HSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE-EEH
T ss_pred ccChhhhhccccCceEecccCc-ccccchhhH-hhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc-cch
Confidence 4444 46678999999999998 666666654 568999999999975 4332 223456789999988763 221
Q ss_pred cccccCCCCCCCCCCCCCCccEEeecCCCCccc--c----cccCCCcccccEEEEeccCCcch-----hhHhhcCCCCcc
Q 035579 477 LTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTC--I----FSKNELPATLESLSVYKCSKLES-----IAERLDNNTSLE 545 (814)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~----~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~ 545 (814)
.... .++.. ...++.|+.+++++|..... + .......++++.|++.++..... ++..+....+|+
T Consensus 238 ~~~~-~l~~~---~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 238 ESFN-ELLKL---LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp HHHH-HHHGG---GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred hHHH-HHHHH---hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 1000 01111 11235789999988753321 0 11123456899999988764332 233345567899
Q ss_pred eEeecccCCcccccccC-CCCCCccEEEecCCCCceecC---CCCCCCCCcceEeecccccccccc---ccccCCCCcce
Q 035579 546 TIGINFCENLKILPSGL-HNLRQLREITIQRCGNLVSFP---EGGLPCAKLSELRIFQCERLEALP---KGLHNLTSLQE 618 (814)
Q Consensus 546 ~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~l~~~~~l~~lp---~~~~~l~~L~~ 618 (814)
.|++++|.+. .+|..+ ..+++|++|++++|.....+| ..+..+++|++|++++| .++.++ ..+..+++|++
T Consensus 314 ~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTS 391 (549)
T ss_dssp EEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCE
T ss_pred EEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCE
Confidence 9999999875 556555 579999999999996555443 34677899999999999 555554 35789999999
Q ss_pred EEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCC
Q 035579 619 LTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPAS 696 (814)
Q Consensus 619 L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~ 696 (814)
|++++ .+..+|. ...+++|++|++++|.+..... . ..++|++|++++| .+..++. .+++
T Consensus 392 L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~-----~--~~~~L~~L~Ls~N--~l~~~~~----------~l~~ 452 (549)
T 2z81_A 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT-----C--IPQTLEVLDVSNN--NLDSFSL----------FLPR 452 (549)
T ss_dssp EECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCT-----T--SCTTCSEEECCSS--CCSCCCC----------CCTT
T ss_pred EECCCCCCccCChhhcccccccEEECCCCCcccccc-----h--hcCCceEEECCCC--Chhhhcc----------cCCh
Confidence 99999 7777775 4567999999999998654321 1 1368999999997 6666552 4689
Q ss_pred cceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCch
Q 035579 697 LTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPL 754 (814)
Q Consensus 697 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~ 754 (814)
|++|++++ |+++.+|. ...+++|+.|++++| +++.+++..+ +++|++|++++||.
T Consensus 453 L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 453 LQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred hcEEECCC-CccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 99999999 68999996 567999999999995 7888887654 78999999999873
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-31 Score=304.11 Aligned_cols=262 Identities=15% Similarity=0.078 Sum_probs=172.9
Q ss_pred cccEEEeecc-CCccccccccCCCCCcceEeeecCCCCcccCC-CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEE
Q 035579 366 RLEYLILSCC-EGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEIL 443 (814)
Q Consensus 366 ~L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 443 (814)
.++.++++++ ...+.++..+..+++|++|++++|. ++.+|. +..+ +|++|++++|. +..+|. ..+++|+.|
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~----~~l~~L~~L 330 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCK-FGQFPT----LKLKSLKRL 330 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCB-CSSCCB----CBCSSCCEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCc-ccccCc----ccccccCEE
Confidence 4667777776 4445566677777888888887753 445553 3335 78888888777 556655 346777777
Q ss_pred EEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccc--cccCCCccccc
Q 035579 444 YIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCI--FSKNELPATLE 521 (814)
Q Consensus 444 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~ 521 (814)
++++|.....++. ..+++|++|+++++ ...... .......++|+
T Consensus 331 ~l~~n~~~~~~~~-~~~~~L~~L~l~~n---------------------------------~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 331 TFTSNKGGNAFSE-VDLPSLEFLDLSRN---------------------------------GLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp EEESCBSCCBCCC-CBCTTCCEEECCSS---------------------------------CCBEEEEEEHHHHTCSCCC
T ss_pred eCcCCcccccccc-ccCCCCCEEeCcCC---------------------------------ccCccccccccccccCccC
Confidence 7777653333322 23333555544443 221110 01112234677
Q ss_pred EEEEeccCCcchhhHhhcCCCCcceEeecccCCccccc-ccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 522 SLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILP-SGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
.|++++|...... ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 377 ~L~l~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 377 YLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp EEECCSCSEEEEE-EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcccccc-ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 7777776544433 337788888888888888776655 45777888888888888655556667777888888888888
Q ss_pred ccc-ccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 601 ERL-EALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 601 ~~l-~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
... ..+|..+..+++|+.|++++ .+..+.. ...+++|++|++++|......+ ..+..+++|+.|++++|
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD----GIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSS
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH----HHhhcccCCcEEEecCC
Confidence 544 35777788888888888888 6655522 4456888888888887766543 56788889999999886
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=299.02 Aligned_cols=442 Identities=16% Similarity=0.123 Sum_probs=232.2
Q ss_pred ccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcc
Q 035579 121 EQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLE 199 (814)
Q Consensus 121 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 199 (814)
++++++++.++.+|..+. ++|++|++++|.+....| .+.++++|++|++++|. ++.+....++ .+++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-----~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFK-----FNQELE 72 (520)
T ss_dssp CEEECTTSCCSSCCCSCC----TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGT-----TCTTCC
T ss_pred ceEecCCCCccccccccc----ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhh-----cccCCC
Confidence 467778888888886553 788888888887544443 47788888888888753 4333222211 155555
Q ss_pred eeeccccccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCC
Q 035579 200 TLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLG 279 (814)
Q Consensus 200 ~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~ 279 (814)
+|++++ +.++.+.. . .+++|++|++++|. +++ +
T Consensus 73 ~L~Ls~-N~l~~lp~------~-~l~~L~~L~L~~N~-l~~-~------------------------------------- 105 (520)
T 2z7x_B 73 YLDLSH-NKLVKISC------H-PTVNLKHLDLSFNA-FDA-L------------------------------------- 105 (520)
T ss_dssp EEECCS-SCCCEEEC------C-CCCCCSEEECCSSC-CSS-C-------------------------------------
T ss_pred EEecCC-CceeecCc------c-ccCCccEEeccCCc-ccc-c-------------------------------------
Confidence 555555 33433221 1 45555555555554 331 0
Q ss_pred CCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHH
Q 035579 280 SQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQ 359 (814)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 359 (814)
..+..++.+++|++|+++++ .+... .+..
T Consensus 106 -------------------------------------------~~p~~~~~l~~L~~L~L~~n-~l~~~-------~~~~ 134 (520)
T 2z7x_B 106 -------------------------------------------PICKEFGNMSQLKFLGLSTT-HLEKS-------SVLP 134 (520)
T ss_dssp -------------------------------------------CCCGGGGGCTTCCEEEEEES-SCCGG-------GGGG
T ss_pred -------------------------------------------cchhhhccCCcceEEEecCc-ccchh-------hccc
Confidence 11223466777777777775 34331 1222
Q ss_pred hhhccccc--cEEEeeccCC--ccccccccCCCCC-cceEeeecCCCCcccCC--CCCCCCCcEEEecccC-------CC
Q 035579 360 LCELSCRL--EYLILSCCEG--LVKLPQSSLSLCS-LREIGIYKCSSLVSFPE--VALPSKLEKIHIGACD-------AL 425 (814)
Q Consensus 360 l~~~~~~L--~~L~L~~~~~--~~~~~~~~~~l~~-L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~-------~l 425 (814)
+ ++| ++|++++|.+ .+..|..+..+.. ...+++++|.....++. +..+++|+.+++++|. ..
T Consensus 135 l----~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 135 I----AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp G----TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred c----ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 3 566 8888888876 5566665555442 22345555544444432 2336666666666654 11
Q ss_pred CCCchhhhcCCCCCccEEEEecCCCCcc----cccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEee
Q 035579 426 KSLPEAWMCDTNSSLEILYIEGCRSLTY----IAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSI 501 (814)
Q Consensus 426 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 501 (814)
+.++ .+ ..+++|+.|++++|..-.. +......++|+.|
T Consensus 211 ~~~~-~l--~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L----------------------------------- 252 (520)
T 2z7x_B 211 SILA-KL--QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF----------------------------------- 252 (520)
T ss_dssp HHHH-GG--GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE-----------------------------------
T ss_pred cchh-hh--ccccchhhccccccccCHHHHHHHHHHhhhCcccEE-----------------------------------
Confidence 2222 22 4556666666665431110 0000011233333
Q ss_pred cCCCCcccccccCCCcccccEEEEeccCCcchhhHhh-----cCCCCcceEeecccCCccccc-ccCCCC---CCccEEE
Q 035579 502 VGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERL-----DNNTSLETIGINFCENLKILP-SGLHNL---RQLREIT 572 (814)
Q Consensus 502 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~~-~~~~~l---~~L~~L~ 572 (814)
++++|...+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ ++|+.|+
T Consensus 253 ----------------------~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 253 ----------------------SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp ----------------------EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ----------------------EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 333333333333333 3444444444444443 222 112111 3344444
Q ss_pred ecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccc---c-CCCCCceeEEEecCCcc
Q 035579 573 IQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLE---E-DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 573 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~---~-~~~~~~L~~L~l~~n~~ 647 (814)
+++|. +..++ ....+++|++|++++|.....+|..+..+++|+.|++++ .+..++ . ...+++|++|++++|..
T Consensus 309 l~~n~-l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 309 VSGTR-MVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp EESSC-CCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred cCCCc-ccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 44442 11111 012344455555554433333444444455555555544 333221 1 23456666666666665
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEec
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
....+. ..+..+++|++|++++|. ....+|... +++|+.|++++ +.++.+|.++..+++|++|+++
T Consensus 387 ~~~l~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~l---------~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 387 SYDEKK---GDCSWTKSLLSLNMSSNI-LTDTIFRCL---------PPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVA 452 (520)
T ss_dssp BCCGGG---CSCCCCTTCCEEECCSSC-CCGGGGGSC---------CTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECC
T ss_pred Cccccc---chhccCccCCEEECcCCC-CCcchhhhh---------cccCCEEECCC-CcccccchhhhcCCCCCEEECC
Confidence 542221 346667777788887752 123333322 36788888888 5777888777788888888888
Q ss_pred CCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 728 DCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 728 ~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
+| +++.+|...+ +++|++|++++||
T Consensus 453 ~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 453 SN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-cCCccCHHHhccCCcccEEECcCCC
Confidence 84 6778877534 6788888888876
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-31 Score=300.73 Aligned_cols=347 Identities=16% Similarity=0.171 Sum_probs=263.8
Q ss_pred cCCccccccccCCCCCcceEeeecCCCCcc------------------cC-CCC--CCCCCcEEEecccCCCCCCchhhh
Q 035579 375 CEGLVKLPQSSLSLCSLREIGIYKCSSLVS------------------FP-EVA--LPSKLEKIHIGACDALKSLPEAWM 433 (814)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~------------------~~-~~~--~~~~L~~L~l~~~~~l~~~~~~~~ 433 (814)
|.+.+ +|..++++++|++|+|++|. ++. +| .++ .+++|++|++++|...+.+|..+
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l- 269 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-
Confidence 34434 77788888888888888865 444 55 355 68888888888888777777766
Q ss_pred cCCCCCccEEEEecCCCCc--ccccc-c------CcCccceeeeccccCCcccccccCCCC--CCCCCCCCCCccEEeec
Q 035579 434 CDTNSSLEILYIEGCRSLT--YIAAV-Q------LPSSLKNLQIHGCYNIKTLTVEEGIPS--SSSSRYTSSILEHLSIV 502 (814)
Q Consensus 434 ~~~l~~L~~L~l~~~~~l~--~~~~~-~------~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~L~~L~l~ 502 (814)
..+++|++|++++|..++ .+|.. . .+++|+.|+++++ .++ .+|. .+.. +++|++|+++
T Consensus 270 -~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~------~ip~~~~l~~---l~~L~~L~L~ 338 (636)
T 4eco_A 270 -KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK------TFPVETSLQK---MKKLGMLECL 338 (636)
T ss_dssp -TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS------SCCCHHHHTT---CTTCCEEECC
T ss_pred -hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC------ccCchhhhcc---CCCCCEEeCc
Confidence 778888888888876344 34432 1 1266888888777 333 4454 3333 3678899998
Q ss_pred CCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCC-cceEeecccCCcccccccCCCCC--CccEEEecCCCCc
Q 035579 503 GCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTS-LETIGINFCENLKILPSGLHNLR--QLREITIQRCGNL 579 (814)
Q Consensus 503 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~~~~l 579 (814)
++...+. ++.....++|+.|++++|... .+|..+..+++ |++|++++|.+. .+|..+..++ +|++|++++|...
T Consensus 339 ~N~l~g~-ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 339 YNQLEGK-LPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp SCCCEEE-CCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCcCccc-hhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 8776545 334555678999999998655 88888999999 999999999988 7787777654 8999999999766
Q ss_pred eecCCCCC-------CCCCcceEeeccccccccccccc-cCCCCcceEEecC-ccCccccCCC--C-------CceeEEE
Q 035579 580 VSFPEGGL-------PCAKLSELRIFQCERLEALPKGL-HNLTSLQELTIGG-ALPSLEEDGL--P-------TNLHSLD 641 (814)
Q Consensus 580 ~~~~~~~~-------~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~-~~~~l~~~~~--~-------~~L~~L~ 641 (814)
..+|..+. .+++|++|++++| .++.+|..+ ..+++|++|++++ .+..++.... . ++|++|+
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred CcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence 66676666 6789999999999 555777654 5689999999999 7777765322 1 2899999
Q ss_pred ecCCcchhhhhhhcccccC--CCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEecc------CCCCccccc
Q 035579 642 IRGNMEIWKSMIERGRGFH--RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR------FPNLERLSS 713 (814)
Q Consensus 642 l~~n~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~ 713 (814)
+++|.+... + ..+. .+++|++|++++| .+..+|... ..+++|++|++++ +.-.+.+|.
T Consensus 495 Ls~N~l~~l-p----~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 495 LRFNKLTKL-S----DDFRATTLPYLVGIDLSYN--SFSKFPTQP-------LNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp CCSSCCCBC-C----GGGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred CcCCcCCcc-C----hhhhhccCCCcCEEECCCC--CCCCcChhh-------hcCCCCCEEECCCCcccccCcccccChH
Confidence 999988743 2 4454 8999999999997 677788877 4689999999954 334567888
Q ss_pred ccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCchh
Q 035579 714 SIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLI 755 (814)
Q Consensus 714 ~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~l 755 (814)
++..+++|++|++++| +++.+|.. +.++|++|++++|+..
T Consensus 561 ~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 561 GITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp TGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred HHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCCc
Confidence 9999999999999996 67999975 5589999999999743
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=299.70 Aligned_cols=374 Identities=14% Similarity=0.140 Sum_probs=217.4
Q ss_pred cccCCcccEEEEccCCCccc-CCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCCC
Q 035579 221 VEGFPKLRELHIISCSKLQG-TFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPL 299 (814)
Q Consensus 221 ~~~l~~L~~L~l~~c~~l~~-~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
++.+++|++|++++|. +++ .+|..... . +.+.+.|.+
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~-----~------------------------------------s~n~~~g~i 481 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWED-----A------------------------------------NSDYAKQYE 481 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSC-----T------------------------------------TSHHHHHHT
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccc-----c------------------------------------ccccccccC
Confidence 7899999999999998 875 22221100 0 001223344
Q ss_pred CCCCC--CcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCccc--chhhHHHHHHHHhh---hccccccEEEe
Q 035579 300 KPRLP--KLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQS--LVAEEEKDQQQQLC---ELSCRLEYLIL 372 (814)
Q Consensus 300 ~~~~~--~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~l~---~~~~~L~~L~L 372 (814)
|..+. +++.|+.++++++..... .+..+..+++|+.|++++|..++. +|.. +..+. ..+++|++|++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-----i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKAD-----WTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHH-----HHHHHHCTTTTTTCCEEEC
T ss_pred ChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHH-----HHhhhhcccccCCccEEEe
Confidence 55554 555566666655554333 335568889999999998753553 4432 33331 11258999999
Q ss_pred eccCCcccccc--ccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCC-ccEEEEecCC
Q 035579 373 SCCEGLVKLPQ--SSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSS-LEILYIEGCR 449 (814)
Q Consensus 373 ~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~ 449 (814)
++|.+. .+|. .+..+++|++|++++|. ++.+|.+..+++|+.|++++|. +..+|..+ ..+++ |++|++++|.
T Consensus 556 s~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l--~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 556 GYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDF--CAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCTTS--CEECTTCCEEECCSSC
T ss_pred eCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc-cccchHHH--hhccccCCEEECcCCC
Confidence 999876 8888 88999999999999865 4588877788999999999998 55888776 77888 9999999865
Q ss_pred CCccccccc-Cc--CccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEe
Q 035579 450 SLTYIAAVQ-LP--SSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVY 526 (814)
Q Consensus 450 ~l~~~~~~~-~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 526 (814)
++.+|... .. ++|+.|+++++..-. .+|...... .....++|+.|+++
T Consensus 631 -L~~lp~~~~~~~~~~L~~L~Ls~N~l~g------~ip~l~~~l----------------------~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 631 -LKYIPNIFNAKSVYVMGSVDFSYNKIGS------EGRNISCSM----------------------DDYKGINASTVTLS 681 (876)
T ss_dssp -CCSCCSCCCTTCSSCEEEEECCSSCTTT------TSSSCSSCT----------------------TTCCCCCEEEEECC
T ss_pred -CCcCchhhhccccCCCCEEECcCCcCCC------ccccchhhh----------------------ccccCCCcCEEEcc
Confidence 44444221 11 124444444432111 111100000 00011256666776
Q ss_pred ccCCcchhhHh-hcCCCCcceEeecccCCcccccccCCC--------CCCccEEEecCCCCceecCCCCC--CCCCcceE
Q 035579 527 KCSKLESIAER-LDNNTSLETIGINFCENLKILPSGLHN--------LRQLREITIQRCGNLVSFPEGGL--PCAKLSEL 595 (814)
Q Consensus 527 ~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~--------l~~L~~L~l~~~~~l~~~~~~~~--~l~~L~~L 595 (814)
+|... .+|.. +..+++|+.|++++|.+. .+|..+.. +++|++|++++| .+..+|..+. .+++|+.|
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEE
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEE
Confidence 66555 34433 346677777777777666 33333222 236666666666 4446665554 56666666
Q ss_pred eeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCC
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDD 675 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 675 (814)
++++| .+..+|..+..+++|+.|+++++- ++++|......+ ..+..+++|+.|++++|
T Consensus 759 ~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~---------------~ls~N~l~~~ip----~~l~~L~~L~~L~Ls~N-- 816 (876)
T 4ecn_A 759 DVSYN-CFSSFPTQPLNSSQLKAFGIRHQR---------------DAEGNRILRQWP----TGITTCPSLIQLQIGSN-- 816 (876)
T ss_dssp ECCSS-CCSSCCCGGGGCTTCCEEECCCCB---------------CTTCCBCCCCCC----TTGGGCSSCCEEECCSS--
T ss_pred EeCCC-CCCccchhhhcCCCCCEEECCCCC---------------CcccccccccCh----HHHhcCCCCCEEECCCC--
Confidence 66666 333356555555555555544310 222333333322 44566666666666665
Q ss_pred CCccCCccccccCCCCCCCCCcceEEeccCCCCccc
Q 035579 676 DMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL 711 (814)
Q Consensus 676 ~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 711 (814)
.+..+|... .++|+.|+|++ |.+..+
T Consensus 817 ~L~~Ip~~l---------~~~L~~LdLs~-N~l~~i 842 (876)
T 4ecn_A 817 DIRKVDEKL---------TPQLYILDIAD-NPNISI 842 (876)
T ss_dssp CCCBCCSCC---------CSSSCEEECCS-CTTCEE
T ss_pred CCCccCHhh---------cCCCCEEECCC-CCCCcc
Confidence 446666543 25666666666 334443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-31 Score=305.87 Aligned_cols=359 Identities=16% Similarity=0.171 Sum_probs=240.6
Q ss_pred ccccEEEeeccCCccc-----------------cccccC--CCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccC-
Q 035579 365 CRLEYLILSCCEGLVK-----------------LPQSSL--SLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACD- 423 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~-----------------~~~~~~--~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~- 423 (814)
++|++|++++|.+.+. +|..++ ++++|++|++++|.....+| .+..+++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 6666666666665543 666666 66666666666665555555 24456666666666665
Q ss_pred CCC-CCchhhhcCCC------CCccEEEEecCCCCccccc---ccCcCccceeeeccccCCcccccccCCCCCCCCCCCC
Q 035579 424 ALK-SLPEAWMCDTN------SSLEILYIEGCRSLTYIAA---VQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTS 493 (814)
Q Consensus 424 ~l~-~~~~~~~~~~l------~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 493 (814)
..+ .+|..+ +.+ ++|++|++++|. ++.+|. ...+++|+.|+++++..-. .+| .+ ..+
T Consensus 286 l~~~~lp~~~--~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g------~ip-~~---~~l 352 (636)
T 4eco_A 286 ISGEQLKDDW--QALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEG------KLP-AF---GSE 352 (636)
T ss_dssp SCHHHHHHHH--HHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEE------ECC-CC---EEE
T ss_pred CccccchHHH--HhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCcc------chh-hh---CCC
Confidence 332 355544 332 666666666643 335554 2444556666666553221 233 11 123
Q ss_pred CCccEEeecCCCCcccccccCCCccc-ccEEEEeccCCcchhhHhhcCCC--CcceEeecccCCcccccccCC-------
Q 035579 494 SILEHLSIVGCPSLTCIFSKNELPAT-LESLSVYKCSKLESIAERLDNNT--SLETIGINFCENLKILPSGLH------- 563 (814)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~------- 563 (814)
++|++|+++++... .+.......++ |++|++++|... .+|..+..+. +|+.|++++|.+.+..|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 46777777665432 32222333456 888888887755 7777776655 899999999999888888777
Q ss_pred CCCCccEEEecCCCCceecCCCC-CCCCCcceEeeccccccccccccccC--------CCCcceEEecC-ccCcccc-CC
Q 035579 564 NLRQLREITIQRCGNLVSFPEGG-LPCAKLSELRIFQCERLEALPKGLHN--------LTSLQELTIGG-ALPSLEE-DG 632 (814)
Q Consensus 564 ~l~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~l~~lp~~~~~--------l~~L~~L~l~~-~~~~l~~-~~ 632 (814)
.+++|++|++++| .+..+|..+ ..+++|++|++++| .++.+|..... +++|+.|++++ .+..++. ..
T Consensus 431 ~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred cCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 7789999999988 555777654 35788999999988 45577764432 23899999998 7777765 22
Q ss_pred --CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC-----CCCCccCCccccccCCCCCCCCCcceEEeccC
Q 035579 633 --LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC-----DDDMVSFPPEDKRLGTALPLPASLTDLEIGRF 705 (814)
Q Consensus 633 --~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~-----~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (814)
.+++|++|++++|.+.. .+ ..+..+++|++|++++| +.....+|... ..+++|++|++++
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l-------~~l~~L~~L~Ls~- 575 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FP----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-------TLCPSLTQLQIGS- 575 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CC----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG-------GGCSSCCEEECCS-
T ss_pred hccCCCcCEEECCCCCCCC-cC----hhhhcCCCCCEEECCCCcccccCcccccChHHH-------hcCCCCCEEECCC-
Confidence 67899999999998776 22 56778999999999653 22356677766 4689999999999
Q ss_pred CCCcccccccccCCCCCeEEecCCCCCCccCCCCCc----------CCccEEeecCCchhh
Q 035579 706 PNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLP----------SSLLRLSILSCPLIE 756 (814)
Q Consensus 706 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~----------~~L~~L~i~~c~~l~ 756 (814)
|.++.+|..+. ++|+.|++++| .+..++...+. ...+..++.+||.++
T Consensus 576 N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 576 NDIRKVNEKIT--PNISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp SCCCBCCSCCC--TTCCEEECCSC-TTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CcCCccCHhHh--CcCCEEECcCC-CCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 67799998655 89999999996 56776654431 223455788999765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=291.21 Aligned_cols=431 Identities=15% Similarity=0.067 Sum_probs=261.2
Q ss_pred CCcceeEEEEecCCCCCCCcchhhHHhhhcCCCCCcCcccEEEeeeCCCCC-CccccCCCCCcccEEEEecCCCCCCCCC
Q 035579 83 ENLRELLLQWTRSTDGSSSWKAETEMGVLDMLKPHKNLEQFGICGYGGTKF-PTWLGDCSFSNLVTLKFKDCGVCTTLPS 161 (814)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 161 (814)
++|++|++++|..... ..+.+..+++|++|++++|.+..+ |+.+. .+++|++|++++|.+. .+|.
T Consensus 21 ~~L~~L~Ls~n~i~~~-----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~-~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNYISEL-----------WTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLSHNKLV-KISC 86 (520)
T ss_dssp TTCSEEECCSSCCCCC-----------CHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEECCSSCCC-EEEC
T ss_pred ccccEEECCCCccccc-----------ChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEecCCCcee-ecCc
Confidence 6778888876665432 124566677788888887776655 45555 6778888888887643 5555
Q ss_pred CCCCCccceeeecCCcCcee--eCccccCCCCCCCCCCcceeeccccccccccccCCCCCCcccCCcc--cEEEEccCCC
Q 035579 162 VGQLSSLKHLTVRGMSRVKS--LGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKL--RELHIISCSK 237 (814)
Q Consensus 162 l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L--~~L~l~~c~~ 237 (814)
. .+++|++|++++|. ++. ++..+.. +++|++|++++ +.++... +..+++| ++|++++|.
T Consensus 87 ~-~l~~L~~L~L~~N~-l~~~~~p~~~~~------l~~L~~L~L~~-n~l~~~~-------~~~l~~L~L~~L~l~~n~- 149 (520)
T 2z7x_B 87 H-PTVNLKHLDLSFNA-FDALPICKEFGN------MSQLKFLGLST-THLEKSS-------VLPIAHLNISKVLLVLGE- 149 (520)
T ss_dssp C-CCCCCSEEECCSSC-CSSCCCCGGGGG------CTTCCEEEEEE-SSCCGGG-------GGGGTTSCEEEEEEEECT-
T ss_pred c-ccCCccEEeccCCc-cccccchhhhcc------CCcceEEEecC-cccchhh-------ccccccceeeEEEeeccc-
Confidence 5 77788888887753 333 2223322 77788888777 3344311 4456666 888888776
Q ss_pred c--ccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCceeeccCCccccccCC-CCCCCCCcceEEEcCC
Q 035579 238 L--QGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGP-LKPRLPKLEELKINDM 314 (814)
Q Consensus 238 l--~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~~~~l 314 (814)
+ .+..|..++.++. .. ..+++.++. +.+. .+..+.++..|+.+++
T Consensus 150 l~~~~~~~~~l~~l~~-~~----l~l~l~~n~---------------------------~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNT-ES----LHIVFPTNK---------------------------EFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp TTTSSCCTTTTTTCCE-EE----EEEECCSSS---------------------------CCCCCCCCCCTTCSEEEECCE
T ss_pred cccccccccccccccc-ce----EEEEeccCc---------------------------chhhhhhhhhhcccceeeccc
Confidence 5 4456666665542 10 012222222 1122 2335677888888888
Q ss_pred CCcc-------hhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccccc--
Q 035579 315 KEQT-------YMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSS-- 385 (814)
Q Consensus 315 ~~~~-------~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~-- 385 (814)
+.+. ... .. ..+..+++|+.|+++++. +............ ..++|++|++++|.+.+.+|..+
T Consensus 198 ~~n~~~~~~~~~~~-~~-~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~p~~~~~ 269 (520)
T 2z7x_B 198 KCVLEDNKCSYFLS-IL-AKLQTNPKLSNLTLNNIE-TTWNSFIRILQLV-----WHTTVWYFSISNVKLQGQLDFRDFD 269 (520)
T ss_dssp EECCSTTTTHHHHH-HH-HGGGGCTTCCEEEEEEEE-EEHHHHHHHHHHH-----HTSSCSEEEEEEEEEESCCCCCCCC
T ss_pred cccccccccceeec-ch-hhhccccchhhccccccc-cCHHHHHHHHHHh-----hhCcccEEEeecccccCccccchhh
Confidence 7764 211 12 245778888888888753 3322111111110 12578888888887766777766
Q ss_pred ---CCCCCcceEeeecCCCCcccCC--CCC---CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc
Q 035579 386 ---LSLCSLREIGIYKCSSLVSFPE--VAL---PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV 457 (814)
Q Consensus 386 ---~~l~~L~~L~L~~~~~l~~~~~--~~~---~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 457 (814)
..+++|+.+++++|.. .+|. +.. -.+|+.|++++|. +...+.. ..+++|++|++++|. ++.
T Consensus 270 ~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~Ls~n~-l~~---- 338 (520)
T 2z7x_B 270 YSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCP---SKISPFLHLDFSNNL-LTD---- 338 (520)
T ss_dssp CCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCCC---SSCCCCCEEECCSSC-CCT----
T ss_pred cccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccch---hhCCcccEEEeECCc-cCh----
Confidence 6677777777766533 3331 111 1346666666655 3222211 334555555555543 110
Q ss_pred cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcc--hhh
Q 035579 458 QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLE--SIA 535 (814)
Q Consensus 458 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~ 535 (814)
..|. ....+++|++|++++|...+ .+|
T Consensus 339 ------------------------~~~~---------------------------~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 339 ------------------------TVFE---------------------------NCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp ------------------------TTTT---------------------------TCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred ------------------------hhhh---------------------------hhccCCCCCEEEccCCccCccccch
Confidence 1111 11223467777777776655 567
Q ss_pred HhhcCCCCcceEeecccCCcccccc-cCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPS-GLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLT 614 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 614 (814)
..++.+++|++|++++|.+.+.+|. .+..+++|++|++++|.....+|..+. ++|++|++++| .++.+|..+..++
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~ 444 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLE 444 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCT
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCC
Confidence 7888899999999999988875554 477888999999998865555555443 58999999988 5668888777888
Q ss_pred CcceEEecC-ccCcccc--CCCCCceeEEEecCCcchh
Q 035579 615 SLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIW 649 (814)
Q Consensus 615 ~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~ 649 (814)
+|++|++++ .+..++. ...+++|++|++++|+...
T Consensus 445 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 888888877 6666654 3345667777777766543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=298.54 Aligned_cols=341 Identities=16% Similarity=0.149 Sum_probs=245.3
Q ss_pred cccccCCCCCcceEeeecCCCCc-----------------ccCC-CC--CCCCCcEEEecccCCCCCCchhhhcCCCCCc
Q 035579 381 LPQSSLSLCSLREIGIYKCSSLV-----------------SFPE-VA--LPSKLEKIHIGACDALKSLPEAWMCDTNSSL 440 (814)
Q Consensus 381 ~~~~~~~l~~L~~L~L~~~~~l~-----------------~~~~-~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 440 (814)
+|..+.++++|++|+|++|.... .+|. ++ .+++|++|++++|...+.+|..+ ..+++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH--hCCCCC
Confidence 66667777777777777754333 1443 33 56777777777776666666655 667777
Q ss_pred cEEEEecCCCCcc--cccc--------cCcCccceeeeccccCCcccccccCCCC--CCCCCCCCCCccEEeecCCCCcc
Q 035579 441 EILYIEGCRSLTY--IAAV--------QLPSSLKNLQIHGCYNIKTLTVEEGIPS--SSSSRYTSSILEHLSIVGCPSLT 508 (814)
Q Consensus 441 ~~L~l~~~~~l~~--~~~~--------~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~ 508 (814)
++|++++|..++. +|.. ...++|+.|+++++. +. .+|. .+.. +++|+.|+++++...
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~------~ip~~~~l~~---L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE------EFPASASLQK---MVKLGLLDCVHNKVR- 586 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC------BCCCHHHHTT---CTTCCEEECTTSCCC-
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC------ccCChhhhhc---CCCCCEEECCCCCcc-
Confidence 7777777653332 3321 122457777776662 22 3443 2322 356888888776644
Q ss_pred cccccCCCcccccEEEEeccCCcchhhHhhcCCCC-cceEeecccCCcccccccCCCCCC--ccEEEecCCCCceecCC-
Q 035579 509 CIFSKNELPATLESLSVYKCSKLESIAERLDNNTS-LETIGINFCENLKILPSGLHNLRQ--LREITIQRCGNLVSFPE- 584 (814)
Q Consensus 509 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~l~~~~~l~~~~~- 584 (814)
. ++....+++|+.|++++|... .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.....+|.
T Consensus 587 ~-lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 587 H-LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp B-CCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred c-chhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 3 445556678999999998766 88888999999 999999999987 67777776654 99999999865444342
Q ss_pred --CCC--CCCCcceEeeccccccccccccc-cCCCCcceEEecC-ccCccccCCC---------CCceeEEEecCCcchh
Q 035579 585 --GGL--PCAKLSELRIFQCERLEALPKGL-HNLTSLQELTIGG-ALPSLEEDGL---------PTNLHSLDIRGNMEIW 649 (814)
Q Consensus 585 --~~~--~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~-~~~~l~~~~~---------~~~L~~L~l~~n~~~~ 649 (814)
... .+++|+.|++++| .+..+|..+ ..+++|+.|++++ .+..++...+ +++|++|++++|.+..
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred hhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 222 3458999999999 556787765 4889999999998 7777765322 1289999999998773
Q ss_pred hhhhhcccccC--CCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEecc------CCCCcccccccccCCCC
Q 035579 650 KSMIERGRGFH--RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR------FPNLERLSSSIVDLQNL 721 (814)
Q Consensus 650 ~~~~~~~~~l~--~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L 721 (814)
. + ..+. .+++|+.|++++| .+..+|... ..+++|+.|++++ |.....+|..+..+++|
T Consensus 743 l-p----~~l~~~~l~~L~~L~Ls~N--~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 743 L-S----DDFRATTLPYLSNMDVSYN--CFSSFPTQP-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp C-C----GGGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred c-h----HHhhhccCCCcCEEEeCCC--CCCccchhh-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 3 2 4455 8999999999998 677788877 4689999999987 34456788899999999
Q ss_pred CeEEecCCCCCCccCCCCCcCCccEEeecCCch
Q 035579 722 TELCLRDCPKLKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 722 ~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
+.|++++| .++.+|.. +.++|+.|++++|+.
T Consensus 809 ~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 809 IQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred CEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 99999996 67999985 568999999999974
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-28 Score=280.48 Aligned_cols=517 Identities=15% Similarity=0.104 Sum_probs=307.4
Q ss_pred eeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCCCCcceeeccc
Q 035579 127 GYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPFPCLETLRFEN 205 (814)
Q Consensus 127 ~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 205 (814)
+-..+.+|..+. +++++|+|++|.+....+ ++.++++|++|+|++| .++.++...++ .+++|++|++++
T Consensus 40 ~~~l~~vP~~lp----~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~-----~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 40 ELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ-----SLSHLSTLILTG 109 (635)
T ss_dssp TSCCSSCCSSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT-----TCTTCCEEECTT
T ss_pred CCCcCccCCCCC----cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhc-----CCCCCCEEEccC
Confidence 334566776543 467888888877443333 4778888888888875 46666544322 277777777777
Q ss_pred cccccccccCCCCCCcccCCcccEEEEccCCCcccCCCCCCCcccceeeccccceeEEcCCCceeeecccccCCCCCcee
Q 035579 206 MQEWEDWIPLRSDQGVEGFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGSLCKFEIGGCKKVVWRSATDHLGSQNSVV 285 (814)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~l~~l~l~~c~~~~~~~~~~~~~~~~~~~ 285 (814)
++++.+.... +..+++|++|++++|. ++ .+|.
T Consensus 110 -N~l~~l~~~~----f~~L~~L~~L~Ls~N~-l~-~l~~----------------------------------------- 141 (635)
T 4g8a_A 110 -NPIQSLALGA----FSGLSSLQKLVAVETN-LA-SLEN----------------------------------------- 141 (635)
T ss_dssp -CCCCEECGGG----GTTCTTCCEEECTTSC-CC-CSTT-----------------------------------------
T ss_pred -CcCCCCCHHH----hcCCCCCCEEECCCCc-CC-CCCh-----------------------------------------
Confidence 4565554332 3567788888888876 65 3332
Q ss_pred eccCCccccccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccc
Q 035579 286 CRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSC 365 (814)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~ 365 (814)
..|.+++.|+.+++++|.+.....+..+..+++|++|+++++ .++.++... +..+.....
T Consensus 142 ---------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~----l~~L~~l~~ 201 (635)
T 4g8a_A 142 ---------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTD----LRVLHQMPL 201 (635)
T ss_dssp ---------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGG----GHHHHTCTT
T ss_pred ---------------hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-ccccccccc----ccchhhhhh
Confidence 112333333333333333322223344566777777777774 455554432 222222223
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CCCCCCCCcEEEecccCC-----CCCCchhhhcCCCC
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EVALPSKLEKIHIGACDA-----LKSLPEAWMCDTNS 438 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~-----l~~~~~~~~~~~l~ 438 (814)
....++++.|.+.. ++........++.+++.++.....+. .+..+..++...+..+.. +.......+ ....
T Consensus 202 ~~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~-~~~~ 279 (635)
T 4g8a_A 202 LNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL-EGLC 279 (635)
T ss_dssp CCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT-GGGG
T ss_pred hhhhhhcccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc-cccc
Confidence 44566676666533 33333334455666666543221111 112233444433322210 111111110 2233
Q ss_pred CccEEEEecCCCCccc----ccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccC
Q 035579 439 SLEILYIEGCRSLTYI----AAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKN 514 (814)
Q Consensus 439 ~L~~L~l~~~~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 514 (814)
.+...++..+..-... .......+++.+.+.++.... ++. ......++.|++.++.... ++ .
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-------~~~----~~~~~~L~~L~l~~~~~~~--~~-~ 345 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-------VKD----FSYNFGWQHLELVNCKFGQ--FP-T 345 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-------CGG----GGSCCCCSEEEEESCEESS--CC-C
T ss_pred chhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-------ccc----cccchhhhhhhcccccccC--cC-c
Confidence 3444443332111100 001122334444444332111 000 0111346666666653221 11 1
Q ss_pred CCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCc
Q 035579 515 ELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKL 592 (814)
Q Consensus 515 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 592 (814)
.....|+.+++..+...... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+ ....++..+..+++|
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L 422 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQL 422 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTC
T ss_pred ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccc-ccccccccccccccc
Confidence 22346788888776544332 25578899999999988754 44555667889999999887 455666778888999
Q ss_pred ceEeecccccccccc-ccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEE
Q 035579 593 SELRIFQCERLEALP-KGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 668 (814)
Q Consensus 593 ~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L 668 (814)
+.+++..+......+ ..+..+++++.++++. .+..... ...+++|++|++++|.......+ ..+..+++|++|
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~~~~l~~L~~L 499 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFL 499 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEE
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc---hhhhhccccCEE
Confidence 999999886655544 3567889999999988 4444433 44578999999999986654332 678999999999
Q ss_pred EEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC---cCCc
Q 035579 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL---PSSL 744 (814)
Q Consensus 669 ~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L 744 (814)
++++| .+..++...+ ..+++|++|+|++ |+++.++. .+..+++|+.|++++ ++++.+++..+ +++|
T Consensus 500 ~Ls~N--~L~~l~~~~f------~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L 569 (635)
T 4g8a_A 500 DLSQC--QLEQLSPTAF------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSL 569 (635)
T ss_dssp ECTTS--CCCEECTTTT------TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTC
T ss_pred ECCCC--ccCCcChHHH------cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcC
Confidence 99997 7777766542 5789999999999 78998876 788999999999999 57888877654 5799
Q ss_pred cEEeecCCc
Q 035579 745 LRLSILSCP 753 (814)
Q Consensus 745 ~~L~i~~c~ 753 (814)
++|++++||
T Consensus 570 ~~L~L~~Np 578 (635)
T 4g8a_A 570 AFLNLTQND 578 (635)
T ss_dssp CEEECTTCC
T ss_pred CEEEeeCCC
Confidence 999999876
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=278.17 Aligned_cols=296 Identities=24% Similarity=0.257 Sum_probs=130.7
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
++|++|++++|.+.+ +| .+..+++|++|++++| .++.+|.. +++|++|++++|. +..+|. + ..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~n~-l~~l~~-~--~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGNNQ-LEELPE-L--QNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC-cCcccCCC--cccccEEECcCCc-CCcCcc-c--cCCCCCCEEE
Confidence 578888888887654 66 4888888888888886 45556543 4588888888887 666763 3 7788888888
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++. .+++|+.|+++++ .++ .+| .....++|++|+
T Consensus 202 l~~N~-l~~l~~--~~~~L~~L~l~~n-~l~------~lp----------------------------~~~~l~~L~~L~ 243 (454)
T 1jl5_A 202 ADNNS-LKKLPD--LPLSLESIVAGNN-ILE------ELP----------------------------ELQNLPFLTTIY 243 (454)
T ss_dssp CCSSC-CSSCCC--CCTTCCEEECCSS-CCS------SCC----------------------------CCTTCTTCCEEE
T ss_pred CCCCc-CCcCCC--CcCcccEEECcCC-cCC------ccc----------------------------ccCCCCCCCEEE
Confidence 88864 333321 2233444444443 111 111 111223444555
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|... .+|. .+++|+.|++++|.+.+ +|.. +++|++|++++| .+..+|.. .++|++|++++| .+.
T Consensus 244 l~~N~l~-~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N-~l~ 310 (454)
T 1jl5_A 244 ADNNLLK-TLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSN-EIR 310 (454)
T ss_dssp CCSSCCS-SCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS-CCSEESCC---CTTCCEEECCSS-CCS
T ss_pred CCCCcCC-cccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCC-ccCcccCc---CCcCCEEECcCC-cCC
Confidence 5544332 2222 13566666666666554 2322 356666666665 33333321 135666666665 333
Q ss_pred cccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcc
Q 035579 605 ALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPE 683 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~ 683 (814)
.++.. .++|+.|++++ .+..++.. +++|++|++++|..... + . .+++|++|++++| .+..+|.
T Consensus 311 ~i~~~---~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~~l-p----~---~l~~L~~L~L~~N--~l~~l~~- 374 (454)
T 1jl5_A 311 SLCDL---PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEV-P----E---LPQNLKQLHVEYN--PLREFPD- 374 (454)
T ss_dssp EECCC---CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCC-C----C---CCTTCCEEECCSS--CCSSCCC-
T ss_pred cccCC---cCcCCEEECCCCcccccccc--CCcCCEEECCCCccccc-c----c---hhhhccEEECCCC--CCCcCCC-
Confidence 33211 13555555555 44443322 35555555555544321 1 1 2455555555554 3333221
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
.+..+..|. .++....+|. .+++|+.|+++++ .++.+|. +|++++.|.+.+|.
T Consensus 375 ---------ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 375 ---------IPESVEDLR--MNSHLAEVPE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp ---------CCTTCCEEE--CCC-----------------------------------------------
T ss_pred ---------ChHHHHhhh--hccccccccc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCcc
Confidence 112222222 2223333332 2378999999884 6776654 67788888888764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-28 Score=274.20 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=63.8
Q ss_pred CcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCC-CCCCCCccceeeecCCcCceeeCccccCCCCCCCC
Q 035579 117 HKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLP-SVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPIPF 195 (814)
Q Consensus 117 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 195 (814)
+...++++++++.++.+|..+. ++|++|++++|.+....+ .++++++|++|++++| .++.+....++ .+
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-----~l 99 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFL-----FN 99 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTT-----TC
T ss_pred cCCCcEEEcCCCCCccCCCCCC----CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhC-----CC
Confidence 3344788888888888886552 788888998888554443 5888888888888886 45544332222 15
Q ss_pred CCcceeeccccccccccccCCCCCCcccCCcccEEEEccCC
Q 035579 196 PCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCS 236 (814)
Q Consensus 196 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 236 (814)
++|++|++++ +.++.+.. . .+++|++|++++|.
T Consensus 100 ~~L~~L~Ls~-N~l~~lp~------~-~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 100 QDLEYLDVSH-NRLQNISC------C-PMASLRHLDLSFND 132 (562)
T ss_dssp TTCCEEECTT-SCCCEECS------C-CCTTCSEEECCSSC
T ss_pred CCCCEEECCC-CcCCccCc------c-ccccCCEEECCCCC
Confidence 6666666666 33443321 1 45666666666665
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=280.17 Aligned_cols=198 Identities=19% Similarity=0.138 Sum_probs=126.4
Q ss_pred cccEEEEeccCCc--chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 519 TLESLSVYKCSKL--ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 519 ~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
+|+.+++++|... ...+..+..+.+|+.+++..+..... +..+..+++|+.+++.++......+. .+..+++++.+
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccc
Confidence 4444444444332 12344455566666666666555432 33455666777777766543333332 34556667777
Q ss_pred eeccccccccccccccCCCCcceEEecC-c-cCcc-cc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEe
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-A-LPSL-EE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~-~~~l-~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~ 671 (814)
+++.|......+..+..+++|+.|++++ . ...+ +. ...+++|++|++++|.+....+ ..|.++++|++|+|+
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~----~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMS 526 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECT
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh----HHHcCCCCCCEEECC
Confidence 7776654444555666667777777766 2 2222 11 3446788888888887666544 568888999999999
Q ss_pred cCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccC-CCCCeEEecCCC
Q 035579 672 GCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDL-QNLTELCLRDCP 730 (814)
Q Consensus 672 ~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~ 730 (814)
+| .+..++...+ ..+++|++|++++ |+++.+++ .+..+ ++|+.|+++++|
T Consensus 527 ~N--~l~~l~~~~~------~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 527 HN--NFFSLDTFPY------KCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TS--CCCBCCCGGG------TTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CC--cCCCCChhHH------hCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 87 7777776543 5678999999999 67777765 67776 689999998865
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=269.88 Aligned_cols=127 Identities=19% Similarity=0.143 Sum_probs=68.3
Q ss_pred ccccEEEEeccCCcc--hhhHhhcCCCCcceEeecccCCcccccc-cCCCCCCccEEEecCCCCceecCCCCCCCCCcce
Q 035579 518 ATLESLSVYKCSKLE--SIAERLDNNTSLETIGINFCENLKILPS-GLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSE 594 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 594 (814)
++|+.|++++|.... .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.....+|..+. ++|++
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence 345555555554433 3445566666666666666666653333 355566666666666643333333322 46666
Q ss_pred EeeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcc
Q 035579 595 LRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 595 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~ 647 (814)
|++++| .++.+|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+.
T Consensus 455 L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 455 LDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCC-cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 666666 4555665555555666665555 4444443 23344455555555543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=254.54 Aligned_cols=361 Identities=22% Similarity=0.266 Sum_probs=196.7
Q ss_pred ccCCCCCCCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeec
Q 035579 295 LAGPLKPRLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSC 374 (814)
Q Consensus 295 ~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 374 (814)
+.|.+|..+.+++.|+.+++... ...++++|++++| .++.++. .+++|++|++++
T Consensus 46 ~~~~~p~~~~~l~~L~~l~l~~c------------~~~~l~~L~l~~~-~l~~lp~------------~~~~L~~L~l~~ 100 (454)
T 1jl5_A 46 WERNAPPGNGEQREMAVSRLRDC------------LDRQAHELELNNL-GLSSLPE------------LPPHLESLVASC 100 (454)
T ss_dssp HHHTSCTTSCCCHHHHHHHHHHH------------HHHTCSEEECTTS-CCSCCCS------------CCTTCSEEECCS
T ss_pred ccccCCcccccchhcchhhhhhh------------hccCCCEEEecCC-ccccCCC------------CcCCCCEEEccC
Confidence 44455556666665544433211 1256788888886 4666544 137899999998
Q ss_pred cCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCccc
Q 035579 375 CEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYI 454 (814)
Q Consensus 375 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 454 (814)
|.+.+ +|.. +++|++|++++| .++.++.. +++|++|++++|. +..+|. + ..+++|++|++++|. ++.+
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n-~l~~l~~~--~~~L~~L~L~~n~-l~~lp~-~--~~l~~L~~L~l~~N~-l~~l 168 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNN-NLKALSDL--PPLLEYLGVSNNQ-LEKLPE-L--QNSSFLKIIDVDNNS-LKKL 168 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSS-CCSCCCSC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSSC-CSCC
T ss_pred CcCCc-cccc---cCCCcEEECCCC-ccCcccCC--CCCCCEEECcCCC-CCCCcc-c--CCCCCCCEEECCCCc-Cccc
Confidence 88755 6643 478899999885 55555533 3789999999987 666774 4 888999999999864 5555
Q ss_pred ccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchh
Q 035579 455 AAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESI 534 (814)
Q Consensus 455 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 534 (814)
+. .+.+|++|+++++ .++ .+|+ ...+++|++|+++++...+ ++ ..+++|++|++++|... .+
T Consensus 169 p~--~~~~L~~L~L~~n-~l~------~l~~----~~~l~~L~~L~l~~N~l~~--l~--~~~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 169 PD--LPPSLEFIAAGNN-QLE------ELPE----LQNLPFLTAIYADNNSLKK--LP--DLPLSLESIVAGNNILE-EL 230 (454)
T ss_dssp CC--CCTTCCEEECCSS-CCS------SCCC----CTTCTTCCEEECCSSCCSS--CC--CCCTTCCEEECCSSCCS-SC
T ss_pred CC--CcccccEEECcCC-cCC------cCcc----ccCCCCCCEEECCCCcCCc--CC--CCcCcccEEECcCCcCC-cc
Confidence 53 3457888888876 343 3332 2334667777777764322 11 12346777777776444 55
Q ss_pred hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCC
Q 035579 535 AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLT 614 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 614 (814)
| .++.+++|++|++++|.+.+ +|. .+++|++|++++| .+..+|.. +++|++|++++| .++.+|.. .+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~N-~l~~l~~~---~~ 297 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSEN-IFSGLSEL---PP 297 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSEESCC---CT
T ss_pred c-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCC-cccccCcc---cCcCCEEECcCC-ccCcccCc---CC
Confidence 5 36667777777777766654 232 2356777777766 34445542 246777777666 34433321 14
Q ss_pred CcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCC
Q 035579 615 SLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPL 693 (814)
Q Consensus 615 ~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~ 693 (814)
+|+.|++++ .+..++. .+++|++|++++|.....+ . .+++|++|++++| .+..+|. .
T Consensus 298 ~L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~lp-----~---~~~~L~~L~L~~N--~l~~lp~-~--------- 355 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIELP-----A---LPPRLERLIASFN--HLAEVPE-L--------- 355 (454)
T ss_dssp TCCEEECCSSCCSEECC--CCTTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSS--CCSCCCC-C---------
T ss_pred cCCEEECcCCcCCcccC--CcCcCCEEECCCCcccccc-----c---cCCcCCEEECCCC--ccccccc-h---------
Confidence 666666666 4444332 2346666666666544311 1 1456666666665 4445554 1
Q ss_pred CCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 694 PASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 694 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
+++|++|++++ |.++.+|..- ..+..|. .+.....+|. .+++|++|++++|+
T Consensus 356 l~~L~~L~L~~-N~l~~l~~ip---~~l~~L~--~n~~~~~i~~--~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 356 PQNLKQLHVEY-NPLREFPDIP---ESVEDLR--MNSHLAEVPE--LPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCS-SCCSSCCCCC---TTCCEEE--CCC-----------------------
T ss_pred hhhccEEECCC-CCCCcCCCCh---HHHHhhh--hccccccccc--ccCcCCEEECCCCc
Confidence 45666666666 4444433100 1122222 2233444444 35789999999875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=257.67 Aligned_cols=314 Identities=16% Similarity=0.153 Sum_probs=141.4
Q ss_pred CCCCcceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCccc-chhhHHHHHHHHhhhccccccEEEeeccCCccc
Q 035579 302 RLPKLEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK 380 (814)
Q Consensus 302 ~~~~L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 380 (814)
.|.+++.|+.++++++.+. ...+..+..+++|++|++++|. +.. ++.. ..+..+ ++|++|++++|.+.+.
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~l----~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCN-LDGAVLSG---NFFKPL----TSLEMLVLRDNNIKKI 144 (455)
T ss_dssp TTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCEEECTTSC-CBTHHHHS---STTTTC----TTCCEEECCSSBCCSC
T ss_pred cccccccCCEEeCCCCccC-ccChhhccCcccCCEEeCCCCC-CCccccCc---ccccCc----ccCCEEECCCCccCcc
Confidence 3555555555555555542 2234445556666666666642 322 1111 002222 5566666666665444
Q ss_pred cccc-cCCCCCcceEeeecCCCCcccCC-CCC--CCCCcEEEecccCCCCCCchhhhc-------CCCCCccEEEEecCC
Q 035579 381 LPQS-SLSLCSLREIGIYKCSSLVSFPE-VAL--PSKLEKIHIGACDALKSLPEAWMC-------DTNSSLEILYIEGCR 449 (814)
Q Consensus 381 ~~~~-~~~l~~L~~L~L~~~~~l~~~~~-~~~--~~~L~~L~l~~~~~l~~~~~~~~~-------~~l~~L~~L~l~~~~ 449 (814)
.|.. +..+++|++|++++|......+. +.. ..+|+.|++++|. +..++...+. ..+++|++|++++|.
T Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc
Confidence 4443 55566666666665432222221 111 1455666666655 3333322110 133556666666544
Q ss_pred CCcccccc----cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEE
Q 035579 450 SLTYIAAV----QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSV 525 (814)
Q Consensus 450 ~l~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l 525 (814)
.....+.. ....+++.++++++.......... .+....... +. ....++|+.|++
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~~-------~~-~~~~~~L~~L~l 282 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-------------NFKDPDNFT-------FK-GLEASGVKTCDL 282 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------SSCCCCTTT-------TG-GGTTSCCCEEEC
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchh-------------hhccCcccc-------cc-cccccCceEEEe
Confidence 22222111 111334444444442211000000 000000000 00 001135666666
Q ss_pred eccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccccc
Q 035579 526 YKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEA 605 (814)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 605 (814)
++|...+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|++|++++|.....
T Consensus 283 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred cCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc
Confidence 66655555555566666666666666666655555566666666666666533222233455556666666666633333
Q ss_pred ccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCc
Q 035579 606 LPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNM 646 (814)
Q Consensus 606 lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~ 646 (814)
.|..+..+++|++|++++ .+..++. ...+++|++|++++|+
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 344555555555555554 4443332 1223444444444443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=251.48 Aligned_cols=347 Identities=18% Similarity=0.171 Sum_probs=177.3
Q ss_pred cCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCC
Q 035579 330 DICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVA 409 (814)
Q Consensus 330 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~ 409 (814)
.+++++.|+++++ .++.++. +..+ ++|++|++++|.+.. ++. +..+++|++|++++| .++.++.+.
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~~------~~~l----~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n-~l~~~~~~~ 109 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSIDG------VEYL----NNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNN-QIADITPLA 109 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCTT------GGGC----TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred HhccccEEecCCC-CCccCcc------hhhh----cCCCEEECCCCccCC-chh-hhccccCCEEECCCC-ccccChhhc
Confidence 3556677777664 4444432 2222 677777777776543 333 677777777777775 344444466
Q ss_pred CCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCC
Q 035579 410 LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSS 489 (814)
Q Consensus 410 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 489 (814)
.+++|++|++++|. +..++. + ..+++|++|++++|. +..++....+++|+.|.+.+ .+. .++.
T Consensus 110 ~l~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~--~~~------~~~~---- 172 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQ-ITDIDP-L--KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN--QVT------DLKP---- 172 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEE--SCC------CCGG----
T ss_pred CCCCCCEEECCCCC-CCCChH-H--cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCC--ccc------Cchh----
Confidence 67777777777776 555554 2 667777777777753 44444444455566666542 111 1111
Q ss_pred CCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCcc
Q 035579 490 RYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLR 569 (814)
Q Consensus 490 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 569 (814)
...+++|++|+++++.. .. .+....+++|+.|++++|......+ ++.+++|+.|++++|.+... ..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l-~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNKV-SD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSCC-CC-CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hccCCCCCEEECcCCcC-CC-ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 12234455555555432 11 1222233455555555554443333 44555555555555554432 2344555555
Q ss_pred EEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcch
Q 035579 570 EITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEI 648 (814)
Q Consensus 570 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~ 648 (814)
+|++++|. +..++. +..+++|++|++++| .+..++. +..+++|+.|++++ .+..++....+++|++|++++|...
T Consensus 247 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 247 DLDLANNQ-ISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp EEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred EEECCCCc-cccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCC
Confidence 55555552 233322 444555555555555 3333332 44555555555555 4444443344455555555555444
Q ss_pred hhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecC
Q 035579 649 WKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRD 728 (814)
Q Consensus 649 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 728 (814)
... .+..+++|++|++++| .+..++. . ..+++|+.|++++ +.+..+++ +..+++|+.|++++
T Consensus 323 ~~~------~~~~l~~L~~L~l~~n--~l~~~~~-l-------~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 323 DIS------PVSSLTKLQRLFFYNN--KVSDVSS-L-------ANLTNINWLSAGH-NQISDLTP-LANLTRITQLGLND 384 (466)
T ss_dssp CCG------GGGGCTTCCEEECCSS--CCCCCGG-G-------TTCTTCCEEECCS-SCCCBCGG-GTTCTTCCEEECCC
T ss_pred Cch------hhccCccCCEeECCCC--ccCCchh-h-------ccCCCCCEEeCCC-CccCccch-hhcCCCCCEEeccC
Confidence 332 1345555555555554 3333321 1 2455555555555 33444432 45555555555555
Q ss_pred CCCCCccC
Q 035579 729 CPKLKYFP 736 (814)
Q Consensus 729 c~~l~~lp 736 (814)
| .++.+|
T Consensus 385 n-~~~~~p 391 (466)
T 1o6v_A 385 Q-AWTNAP 391 (466)
T ss_dssp E-EEECCC
T ss_pred C-cccCCc
Confidence 3 344433
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-25 Score=244.11 Aligned_cols=341 Identities=18% Similarity=0.168 Sum_probs=272.5
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
++++.|+++++.+ ..+| .+..+++|++|++++| .++.++.+..+++|++|++++|. +..++. + ..+++|++|+
T Consensus 46 ~~l~~L~l~~~~i-~~l~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGI-KSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP-L--ANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCCEEE
T ss_pred ccccEEecCCCCC-ccCc-chhhhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChh-h--cCCCCCCEEE
Confidence 7899999999986 4566 4788999999999996 56666668889999999999998 666666 4 8899999999
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++| .++.++....+++|++|+++++. +. .++. ...+++|++|++++. +.. .+....+++|+.|+
T Consensus 119 L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~------~~~~----~~~l~~L~~L~l~~~--~~~-~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 119 LFNN-QITDIDPLKNLTNLNRLELSSNT-IS------DISA----LSGLTSLQQLSFGNQ--VTD-LKPLANLTTLERLD 183 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEEEEEEE-EC------CCGG----GTTCTTCSEEEEEES--CCC-CGGGTTCTTCCEEE
T ss_pred CCCC-CCCCChHHcCCCCCCEEECCCCc-cC------CChh----hccCCcccEeecCCc--ccC-chhhccCCCCCEEE
Confidence 9996 46666666677889999999884 33 2221 334578999999742 233 23355567899999
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|.... ++ .+..+++|++|++++|.+.+..| ++.+++|++|++++| .+..++ .+..+++|++|++++|. +.
T Consensus 184 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~ 256 (466)
T 1o6v_A 184 ISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-IS 256 (466)
T ss_dssp CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CC
T ss_pred CcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cc
Confidence 99987544 33 48899999999999999887755 778999999999998 455554 56778999999999994 45
Q ss_pred cccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcc
Q 035579 605 ALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPE 683 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~ 683 (814)
.++. +..+++|+.|++++ .+..++....+++|++|++++|...... .+..+++|+.|++++| .+..++.
T Consensus 257 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L~~n--~l~~~~~- 326 (466)
T 1o6v_A 257 NLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFN--NISDISP- 326 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSS--CCSCCGG-
T ss_pred cchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCch------hhcCCCCCCEEECcCC--cCCCchh-
Confidence 5543 88999999999999 7777776777899999999999876643 3678999999999997 5555554
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCch
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
. ..+++|++|++++ +.++.++ .+..+++|+.|++++| .+..+++..-+++|+.|++++|+.
T Consensus 327 ~-------~~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 327 V-------SSLTKLQRLFFYN-NKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQAW 387 (466)
T ss_dssp G-------GGCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEECCCEEE
T ss_pred h-------ccCccCCEeECCC-CccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCCEEeccCCcc
Confidence 2 3689999999999 5788886 7889999999999997 566665534478999999999863
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=247.51 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=73.7
Q ss_pred CCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccc-ccccCCCCCcceEeeecCCCCcccC-CCC
Q 035579 332 CSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKL-PQSSLSLCSLREIGIYKCSSLVSFP-EVA 409 (814)
Q Consensus 332 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~~-~~~ 409 (814)
++|++|+++++ .++.+.+.. +..+ ++|++|++++|.+.+.+ +..+..+++|++|++++|......| .+.
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS----FSRL----QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT----TSSC----TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CccCEEEecCC-ccCcCChhH----hccC----ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 56777777774 455553322 2233 67777777777665444 3456777777777777754333323 355
Q ss_pred CCCCCcEEEecccCCCCCCchh-hhcCCCCCccEEEEecCCCCccccc--ccCcCccceeeeccc
Q 035579 410 LPSKLEKIHIGACDALKSLPEA-WMCDTNSSLEILYIEGCRSLTYIAA--VQLPSSLKNLQIHGC 471 (814)
Q Consensus 410 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~ 471 (814)
.+++|++|++++|...+..+.. .+ ..+++|++|++++|......+. ...+++|++|+++++
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFF-KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTT-TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccc-cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 5777777777777632223332 11 5677777777777542222222 223455666666655
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=234.26 Aligned_cols=303 Identities=17% Similarity=0.206 Sum_probs=169.3
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCC
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEV 408 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 408 (814)
..+++|++|+++++ .+..++. +..+ ++|++|++++|.+. .++. +..+++|++|++++| .++.++.+
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~------~~~~----~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG------IEYL----TNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT------GGGC----TTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCC-ccccchh------hhhc----CCccEEEccCCccc-cchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 35566666666664 3444432 2222 66666666666543 3333 566666666666664 44555555
Q ss_pred CCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCC
Q 035579 409 ALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSS 488 (814)
Q Consensus 409 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 488 (814)
..+++|++|++++|. +..++. + ..+++|++|++++|.....++....++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~l~~n~~~~~~~~~~~l~--------------------------- 155 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISP-L--ANLTKMYSLNLGANHNLSDLSPLSNMT--------------------------- 155 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGG-G--TTCTTCCEEECTTCTTCCCCGGGTTCT---------------------------
T ss_pred cCCCcCCEEECcCCc-ccCchh-h--ccCCceeEEECCCCCCcccccchhhCC---------------------------
Confidence 556666666666665 444444 2 556666666666654444333222222
Q ss_pred CCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCc
Q 035579 489 SRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQL 568 (814)
Q Consensus 489 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 568 (814)
+|+.|++++|......+ +..+++|+.|++++|.+....+ +..+++|
T Consensus 156 ------------------------------~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 201 (347)
T 4fmz_A 156 ------------------------------GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201 (347)
T ss_dssp ------------------------------TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTC
T ss_pred ------------------------------CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcc
Confidence 33333333333222221 4455555555555555443322 4555566
Q ss_pred cEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcc
Q 035579 569 REITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 569 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
+.+++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|++++ .+..++....+++|++|++++|..
T Consensus 202 ~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 202 HYFTAYVN-QITDITP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp CEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred ceeecccC-CCCCCch-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc
Confidence 66666555 3333332 444556666666665 3333433 55566666666666 455444455567777777777765
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEec
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
... ..+..+++|++|++++| .+...+.... ..+++|++|++++ +.++.+++ +..+++|++|+++
T Consensus 278 ~~~------~~~~~l~~L~~L~L~~n--~l~~~~~~~l------~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 278 SDI------SVLNNLSQLNSLFLNNN--QLGNEDMEVI------GGLTNLTTLFLSQ-NHITDIRP-LASLSKMDSADFA 341 (347)
T ss_dssp CCC------GGGGGCTTCSEEECCSS--CCCGGGHHHH------HTCTTCSEEECCS-SSCCCCGG-GGGCTTCSEESSS
T ss_pred CCC------hhhcCCCCCCEEECcCC--cCCCcChhHh------hccccCCEEEccC-CccccccC-hhhhhccceeehh
Confidence 543 23567778888888876 4444433321 3578888888888 45777764 7788888888888
Q ss_pred CCC
Q 035579 728 DCP 730 (814)
Q Consensus 728 ~c~ 730 (814)
+|+
T Consensus 342 ~N~ 344 (347)
T 4fmz_A 342 NQV 344 (347)
T ss_dssp CC-
T ss_pred hhc
Confidence 863
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-25 Score=243.48 Aligned_cols=294 Identities=18% Similarity=0.161 Sum_probs=196.1
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCccc-C-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSF-P-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEI 442 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 442 (814)
++++.|++++|.+.+..+..+..+++|++|+|++|. ++.+ + .+..+++|++|++++|. +..++...+ ..+++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCCE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCCE
Confidence 566666666666555555566666666666666643 3333 2 24456666666666665 555554433 55666666
Q ss_pred EEEecCCCCcccccc--cCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccc
Q 035579 443 LYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATL 520 (814)
Q Consensus 443 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 520 (814)
|++++|. +..+... ..+++ |++|+++++............+++|
T Consensus 109 L~Ls~n~-i~~~~~~~~~~l~~---------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 109 LDISENK-IVILLDYMFQDLYN---------------------------------LKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp EECTTSC-CCEECTTTTTTCTT---------------------------------CCEEEECCTTCCEECTTSSTTCTTC
T ss_pred EECCCCc-cccCChhHcccccc---------------------------------CCEEECCCCccceeChhhccCCCCC
Confidence 6666643 2221111 11222 3333333322111101112233578
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
+.|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|..+..+|.......+|++|++++|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 88888888776666677899999999999999998887788899999999999999888888887777779999999998
Q ss_pred ccccccc-ccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 601 ERLEALP-KGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 601 ~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
.++.+| ..+..+++|+.|++++ .+..++. ...+++|++|++++|.+....+ ..+..+++|+.|++++| .
T Consensus 235 -~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~ 307 (477)
T 2id5_A 235 -NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGN--Q 307 (477)
T ss_dssp -CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTCCEEECCSS--C
T ss_pred -cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH----HHhcCcccCCEEECCCC--c
Confidence 566666 4678888999999988 6666554 3456788888888887766544 56778888888888887 6
Q ss_pred CccCCccccccCCCCCCCCCcceEEeccCCCCc
Q 035579 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE 709 (814)
Q Consensus 677 l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 709 (814)
+..++...+ ..+++|++|++++ |.+.
T Consensus 308 l~~~~~~~~------~~l~~L~~L~l~~-N~l~ 333 (477)
T 2id5_A 308 LTTLEESVF------HSVGNLETLILDS-NPLA 333 (477)
T ss_dssp CSCCCGGGB------SCGGGCCEEECCS-SCEE
T ss_pred CceeCHhHc------CCCcccCEEEccC-CCcc
Confidence 777777653 4567888888888 4444
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-25 Score=232.63 Aligned_cols=299 Identities=16% Similarity=0.180 Sum_probs=220.7
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
++|++|++++|.+ ..++ .+..+++|++|++++| .++.++.+..+++|++|++++|. +..++. + ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i-~~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKV-ASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA-L--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEE
T ss_pred ccccEEEEeCCcc-ccch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH-H--cCCCcCCEEE
Confidence 6777777777765 3344 3666777777777775 45555556667777777777775 555543 2 6667777777
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++. ....++|+.|+
T Consensus 117 l~~n~-i~~~~~---------------------------------------------------------~~~l~~L~~L~ 138 (347)
T 4fmz_A 117 LNEDN-ISDISP---------------------------------------------------------LANLTKMYSLN 138 (347)
T ss_dssp CTTSC-CCCCGG---------------------------------------------------------GTTCTTCCEEE
T ss_pred CcCCc-ccCchh---------------------------------------------------------hccCCceeEEE
Confidence 76653 221111 11123455666
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|.....++. +..+++|++|++++|.+....+ +..+++|++|++++| .+..++. +..+++|+.+++++| .+.
T Consensus 139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~ 212 (347)
T 4fmz_A 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QIT 212 (347)
T ss_dssp CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCC
T ss_pred CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCC
Confidence 666555554443 8899999999999998876644 788999999999998 5566664 777899999999999 455
Q ss_pred cccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcc
Q 035579 605 ALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPE 683 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~ 683 (814)
.++. +..+++|+.|++++ .+..++....+++|++|++++|..... ..+..+++|++|++++| .+..++.-
T Consensus 213 ~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n--~l~~~~~~ 283 (347)
T 4fmz_A 213 DITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSN--QISDISVL 283 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSS--CCCCCGGG
T ss_pred CCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCC--ccCCChhh
Confidence 5543 78999999999999 777777777789999999999987664 35788999999999997 66666432
Q ss_pred ccccCCCCCCCCCcceEEeccCCCCcccc-cccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 684 DKRLGTALPLPASLTDLEIGRFPNLERLS-SSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 684 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
..+++|++|++++| .++..+ ..+..+++|++|++++| .++.++....+++|++|++++|+
T Consensus 284 --------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 --------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp --------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred --------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 46899999999995 566554 47889999999999997 47777663347899999999986
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-25 Score=241.34 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCCCcCcccEEEeeeCCCCCCccccCCCCCcccEEEEecCCCCCCCCCCCCCCccceeeecCCcCceeeCccccCCCCCC
Q 035579 114 LKPHKNLEQFGICGYGGTKFPTWLGDCSFSNLVTLKFKDCGVCTTLPSVGQLSSLKHLTVRGMSRVKSLGSEFYGNDSPI 193 (814)
Q Consensus 114 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 193 (814)
+..+++|+.|+++++.+..+|. +. .+++|++|++++|.+.. +| ++.+++|++|++++|. ++.++ + .
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~-l~--~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~-l~~~~--~------~ 103 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTG-IE--KLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNK-LTNLD--V------T 103 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTT-GG--GCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--C------T
T ss_pred hhHcCCCCEEEccCCCcccChh-hc--ccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCC-Cceee--c------C
Confidence 3345667777777776666652 33 56777777777776333 33 6666777777776642 33321 1 1
Q ss_pred CCCCcceeeccccccccccccCCCCCCcccCCcccEEEEccCC
Q 035579 194 PFPCLETLRFENMQEWEDWIPLRSDQGVEGFPKLRELHIISCS 236 (814)
Q Consensus 194 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 236 (814)
.+++|++|++++ +.++.+. ++.+++|++|++++|.
T Consensus 104 ~l~~L~~L~L~~-N~l~~l~-------~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 104 PLTKLTYLNCDT-NKLTKLD-------VSQNPLLTYLNCARNT 138 (457)
T ss_dssp TCTTCCEEECCS-SCCSCCC-------CTTCTTCCEEECTTSC
T ss_pred CCCcCCEEECCC-CcCCeec-------CCCCCcCCEEECCCCc
Confidence 155555555555 2333321 3455555555555554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=233.89 Aligned_cols=307 Identities=14% Similarity=0.092 Sum_probs=194.0
Q ss_pred cCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-C-
Q 035579 330 DICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-E- 407 (814)
Q Consensus 330 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~- 407 (814)
.+++++.|+++++ .++.++... +..+ ++|++|++++|.+....+..+..+++|++|++++|. ++.++ .
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~----~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAAL----LDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHH----HHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCceEEEecCC-chhhCChhH----hccc----ccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence 5678888888885 577776643 2333 788888888887655555577778888888888754 44443 2
Q ss_pred CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCC
Q 035579 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 408 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 487 (814)
+..+++|++|++++|. +..+|..++ ..+++|++|++++|. ++.++. ..
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~----------------------------~~- 160 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNN-LERIED----------------------------DT- 160 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCT----------------------------TT-
T ss_pred hcCCCCCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCCCc-cCccCh----------------------------hh-
Confidence 4557777777777776 556665543 566777777777653 111110 00
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
....++|++|++++|..... .+..+++|+.|++++|.+.+. ...++
T Consensus 161 --------------------------~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~ 206 (390)
T 3o6n_A 161 --------------------------FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIA 206 (390)
T ss_dssp --------------------------TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSS
T ss_pred --------------------------ccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCc
Confidence 00012344444444332221 134455566666665544321 12234
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
|++|++++| .+..+|... .++|+.|++++| .+...+....+++|++|++++|.+
T Consensus 207 L~~L~l~~n-~l~~~~~~~--~~~L~~L~l~~n-----------------------~l~~~~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 207 VEELDASHN-SINVVRGPV--NVELTILKLQHN-----------------------NLTDTAWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp CSEEECCSS-CCCEEECCC--CSSCCEEECCSS-----------------------CCCCCGGGGGCTTCSEEECCSSCC
T ss_pred ceEEECCCC-eeeeccccc--cccccEEECCCC-----------------------CCcccHHHcCCCCccEEECCCCcC
Confidence 555555554 333333322 234555555554 333333334456777777777766
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEec
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
....+ ..+..+++|++|++++| .+..+|... ..+++|++|++++ +.++.+|..+..+++|++|+++
T Consensus 261 ~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 261 EKIMY----HPFVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLD 326 (390)
T ss_dssp CEEES----GGGTTCSSCCEEECCSS--CCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECC
T ss_pred CCcCh----hHccccccCCEEECCCC--cCcccCccc-------CCCCCCCEEECCC-CcceecCccccccCcCCEEECC
Confidence 55433 56888999999999997 677777655 4689999999999 6889999888899999999999
Q ss_pred CCCCCCccCCCCCcCCccEEeecCCch
Q 035579 728 DCPKLKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 728 ~c~~l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
+| .++.++. ..+++|++|++++||.
T Consensus 327 ~N-~i~~~~~-~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 327 HN-SIVTLKL-STHHTLKNLTLSHNDW 351 (390)
T ss_dssp SS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred CC-ccceeCc-hhhccCCEEEcCCCCc
Confidence 95 6888874 3478999999999873
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=231.25 Aligned_cols=317 Identities=17% Similarity=0.163 Sum_probs=187.8
Q ss_pred hhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC
Q 035579 328 LQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE 407 (814)
Q Consensus 328 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 407 (814)
+..+++|++|+++++ .++.++. +..+ ++|++|++++|.+.+ +| +..+++|++|++++|. ++.++
T Consensus 38 ~~~l~~L~~L~Ls~n-~l~~~~~------l~~l----~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~-l~~~~- 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNS-SITDMTG------IEKL----TGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNK-LTNLD- 101 (457)
T ss_dssp HHHHTTCCEEECCSS-CCCCCTT------GGGC----TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC-CSCCC-
T ss_pred hhHcCCCCEEEccCC-CcccChh------hccc----CCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCC-Cceee-
Confidence 355677777777764 4555431 2333 677777777776543 33 6667777777777653 44443
Q ss_pred CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCC
Q 035579 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 408 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 487 (814)
+..+++|++|++++|. +..++ + ..+++|++|++++|. ++.++ ...+
T Consensus 102 ~~~l~~L~~L~L~~N~-l~~l~--~--~~l~~L~~L~l~~N~-l~~l~-l~~l--------------------------- 147 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNK-LTKLD--V--SQNPLLTYLNCARNT-LTEID-VSHN--------------------------- 147 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC--C--TTCTTCCEEECTTSC-CSCCC-CTTC---------------------------
T ss_pred cCCCCcCCEEECCCCc-CCeec--C--CCCCcCCEEECCCCc-cceec-cccC---------------------------
Confidence 5566777777777776 44454 2 566777777777653 32222 1122
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
++|++|+++++..++.+ .....++|+.|++++|.... +| +..+++|+.|++++|.+.+. .+..+++
T Consensus 148 ------~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~ 213 (457)
T 3bz5_A 148 ------TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQ 213 (457)
T ss_dssp ------TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTT
T ss_pred ------CcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCC
Confidence 33445555544433331 12233467777777765443 44 67777788888887777664 3667778
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
|++|++++| .+..+| +..+++|+.|++++| .++.+| +..+++|+.|++++ .+|+.|++++|..
T Consensus 214 L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~--~~~l~~L~~L~l~~-----------n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 214 LTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQ-----------TDLLEIDLTHNTQ 276 (457)
T ss_dssp CSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECTT-----------CCCSCCCCTTCTT
T ss_pred CCEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcC--HHHCCCCCEEeccC-----------CCCCEEECCCCcc
Confidence 888888877 455565 566777888888877 444444 45667777776654 3455555565554
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCC-CCCCCCcceEEeccCCCCcccccccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTA-LPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 726 (814)
.... .+..+++|+.|++++| ..++.+|.....+... +...++|++|++++ |.++.++ +..+++|+.|++
T Consensus 277 ~~~~------~~~~l~~L~~L~Ls~n-~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 277 LIYF------QAEGCRKIKELDVTHN-TQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSC 346 (457)
T ss_dssp CCEE------ECTTCTTCCCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEEC
T ss_pred CCcc------cccccccCCEEECCCC-cccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEEC
Confidence 3332 2345566666666664 2344444322111110 23457788888888 6777764 777888888888
Q ss_pred cCCCCCCccC
Q 035579 727 RDCPKLKYFP 736 (814)
Q Consensus 727 ~~c~~l~~lp 736 (814)
++ ++++.++
T Consensus 347 ~~-N~l~~l~ 355 (457)
T 3bz5_A 347 VN-AHIQDFS 355 (457)
T ss_dssp CS-SCCCBCT
T ss_pred CC-CCCCCcc
Confidence 87 4676654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=227.11 Aligned_cols=310 Identities=18% Similarity=0.189 Sum_probs=240.3
Q ss_pred cceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccccc
Q 035579 306 LEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSS 385 (814)
Q Consensus 306 L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 385 (814)
+..++.++++++.. ...+...+..+++|++|+++++ .+..++... +..+ ++|++|++++|.+.+..|..+
T Consensus 44 l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTT
T ss_pred cCCceEEEecCCch-hhCChhHhcccccCcEEECCCC-cccccChhh----ccCC----CCcCEEECCCCCCCcCCHHHh
Confidence 34455555555544 3456777899999999999996 577776543 3333 899999999999877777789
Q ss_pred CCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCcc
Q 035579 386 LSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSL 463 (814)
Q Consensus 386 ~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 463 (814)
..+++|++|++++| .++.+|. +..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++. ...++|
T Consensus 114 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~-~~l~~L 188 (390)
T 3o6n_A 114 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVDL-SLIPSL 188 (390)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCCG-GGCTTC
T ss_pred cCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCcccc-cccccc
Confidence 99999999999996 5667775 4669999999999998 555554433 889999999999964 555543 344669
Q ss_pred ceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCC
Q 035579 464 KNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTS 543 (814)
Q Consensus 464 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 543 (814)
+.++++++ .+..+ + ..+.|++|+++++..... + ...+++|+.|++++|..... ..+..+++
T Consensus 189 ~~L~l~~n-~l~~~------~-------~~~~L~~L~l~~n~l~~~--~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~ 249 (390)
T 3o6n_A 189 FHANVSYN-LLSTL------A-------IPIAVEELDASHNSINVV--R-GPVNVELTILKLQHNNLTDT--AWLLNYPG 249 (390)
T ss_dssp SEEECCSS-CCSEE------E-------CCSSCSEEECCSSCCCEE--E-CCCCSSCCEEECCSSCCCCC--GGGGGCTT
T ss_pred ceeecccc-ccccc------C-------CCCcceEEECCCCeeeec--c-ccccccccEEECCCCCCccc--HHHcCCCC
Confidence 99998876 23311 1 114699999998764332 2 23456899999999876654 46889999
Q ss_pred cceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC
Q 035579 544 LETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 544 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
|+.|++++|.+.+..|..+..+++|++|++++| .+..+|..+..+++|++|++++| .+..+|..+..+++|+.|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCC
Confidence 999999999999988899999999999999998 66778877788899999999999 6778888888899999999998
Q ss_pred -ccCccccCCCCCceeEEEecCCcchhhhh
Q 035579 624 -ALPSLEEDGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 624 -~~~~l~~~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
.+..++ ...+++|++|++++|+......
T Consensus 328 N~i~~~~-~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 328 NSIVTLK-LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp SCCCCCC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred CccceeC-chhhccCCEEEcCCCCccchhH
Confidence 777665 4557889999999998766543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=240.33 Aligned_cols=307 Identities=14% Similarity=0.094 Sum_probs=188.9
Q ss_pred cCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--
Q 035579 330 DICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-- 407 (814)
Q Consensus 330 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-- 407 (814)
.+.+++.++++++ .+..++... +..+ ++|++|++++|.+.+..|..+..+++|++|+|++|. ++.+++
T Consensus 49 ~l~~l~~l~l~~~-~l~~lp~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKLPAAL----LDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSC-EESEECTHH----HHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCceEEEeeCC-CCCCcCHHH----HccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 4677888888774 566666543 2333 778888888877666555677777777777777754 444432
Q ss_pred CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCC
Q 035579 408 VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 408 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 487 (814)
++.+++|++|++++|. +..+|..++ ..+++|++|++++|. ++.++ |..+
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N~-l~~~~----------------------------~~~~ 167 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNN-LERIE----------------------------DDTF 167 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCC----------------------------TTTT
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCCc-CCCCC----------------------------hhhh
Confidence 3557777777777776 555655543 566677777776653 11111 0000
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
..+++|+.|++++|.... ++ +..+++|+.|++++|.+.+. ...++
T Consensus 168 ---------------------------~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l~~l-----~~~~~ 212 (597)
T 3oja_B 168 ---------------------------QATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLSTL-----AIPIA 212 (597)
T ss_dssp ---------------------------TTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCCSEE-----ECCTT
T ss_pred ---------------------------hcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCccccc-----cCCch
Confidence 001133333333332222 11 34455555555555544331 12334
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
|+.|++++| .+..++..+. ++|+.|++++| .+...+....+++|++|++++|.+
T Consensus 213 L~~L~ls~n-~l~~~~~~~~--~~L~~L~L~~n-----------------------~l~~~~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 213 VEELDASHN-SINVVRGPVN--VELTILKLQHN-----------------------NLTDTAWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp CSEEECCSS-CCCEEECSCC--SCCCEEECCSS-----------------------CCCCCGGGGGCTTCSEEECCSSCC
T ss_pred hheeeccCC-cccccccccC--CCCCEEECCCC-----------------------CCCCChhhccCCCCCEEECCCCcc
Confidence 555555555 3333332221 34555555555 333333334456777777777776
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEec
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
....+ ..+..+++|+.|++++| .+..+|... ..+++|+.|++++ |.+..+|..+..+++|+.|+++
T Consensus 267 ~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~-------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 267 EKIMY----HPFVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLD 332 (597)
T ss_dssp CEEES----GGGTTCSSCCEEECTTS--CCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECC
T ss_pred CCCCH----HHhcCccCCCEEECCCC--CCCCCCccc-------ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECC
Confidence 65543 56788899999999987 677777655 4578999999999 6788899888889999999999
Q ss_pred CCCCCCccCCCCCcCCccEEeecCCch
Q 035579 728 DCPKLKYFPEKGLPSSLLRLSILSCPL 754 (814)
Q Consensus 728 ~c~~l~~lp~~~l~~~L~~L~i~~c~~ 754 (814)
+| .+..+|. ..+++|++|++++||.
T Consensus 333 ~N-~l~~~~~-~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 333 HN-SIVTLKL-STHHTLKNLTLSHNDW 357 (597)
T ss_dssp SS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred CC-CCCCcCh-hhcCCCCEEEeeCCCC
Confidence 95 6777764 3467999999999873
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=230.71 Aligned_cols=291 Identities=21% Similarity=0.171 Sum_probs=209.8
Q ss_pred CCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--CC
Q 035579 332 CSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VA 409 (814)
Q Consensus 332 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~ 409 (814)
+++++|+++++ .++.+++.. +..+ ++|++|+|++|.+....|..+..+++|++|+|++| .++.++. +.
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDE----FASF----PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTT----TTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSST
T ss_pred CCCcEEECCCC-ccceECHhH----ccCC----CCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCccccc
Confidence 46777777774 566554432 2333 77888888888776666777888888888888875 4555553 45
Q ss_pred CCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc--cCcCccceeeeccccCCcccccccCCCCCC
Q 035579 410 LPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV--QLPSSLKNLQIHGCYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 410 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 487 (814)
.+++|++|++++|......+..+ ..+++|++|++++|. ++.++.. ..+++
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~------------------------- 153 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGDND-LVYISHRAFSGLNS------------------------- 153 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEECCTT-CCEECTTSSTTCTT-------------------------
T ss_pred CCCCCCEEECCCCccccCChhHc--cccccCCEEECCCCc-cceeChhhccCCCC-------------------------
Confidence 67888888888887433334444 778888888888854 3332211 12233
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
|++|+++++............+++|+.|++++|......+..+..+++|+.|++++|...+.+|.......+
T Consensus 154 --------L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 154 --------LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp --------CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred --------CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 444444443221110111223457899999998877777778999999999999999999888887777789
Q ss_pred ccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEec
Q 035579 568 LREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIR 643 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~ 643 (814)
|++|++++| .++.+|. .+..+++|+.|++++|......+..+..+++|+.|++++ .+..+.. ...+++|++|+++
T Consensus 226 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred ccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 999999998 5667774 577889999999999965444455789999999999999 6666543 4457999999999
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+|.+..... ..|..+++|++|++++|
T Consensus 305 ~N~l~~~~~----~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 305 GNQLTTLEE----SVFHSVGNLETLILDSN 330 (477)
T ss_dssp SSCCSCCCG----GGBSCGGGCCEEECCSS
T ss_pred CCcCceeCH----hHcCCCcccCEEEccCC
Confidence 998876544 56889999999999997
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=234.35 Aligned_cols=310 Identities=18% Similarity=0.187 Sum_probs=241.7
Q ss_pred cceEEEcCCCCcchhccchhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccccccc
Q 035579 306 LEELKINDMKEQTYMWKSHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSS 385 (814)
Q Consensus 306 L~~L~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 385 (814)
+..++.++++++.+ ...++..+..+++|++|+++++ .+..+++.. +..+ ++|++|+|++|.+.+..|..+
T Consensus 50 l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDL-QIEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTS-CCCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTT
T ss_pred CCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCC-CCCCCChHH----hcCC----CCCCEEECCCCcCCCCCHHHH
Confidence 44555666666655 4467778899999999999996 577776543 3333 899999999999877777788
Q ss_pred CCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCcc
Q 035579 386 LSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSL 463 (814)
Q Consensus 386 ~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 463 (814)
+.+++|++|+|++| .++.+|. +..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++.. .+++|
T Consensus 120 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~-~l~~L 194 (597)
T 3oja_B 120 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVDLS-LIPSL 194 (597)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCCGG-GCTTC
T ss_pred cCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcChh-hhhhh
Confidence 99999999999996 5666664 4679999999999998 555554333 889999999999964 5555533 34569
Q ss_pred ceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCC
Q 035579 464 KNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTS 543 (814)
Q Consensus 464 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 543 (814)
+.|+++++ .+..+ + ..+.|+.|+++++..... + ...+++|+.|++++|.... +..+..+++
T Consensus 195 ~~L~l~~n-~l~~l------~-------~~~~L~~L~ls~n~l~~~--~-~~~~~~L~~L~L~~n~l~~--~~~l~~l~~ 255 (597)
T 3oja_B 195 FHANVSYN-LLSTL------A-------IPIAVEELDASHNSINVV--R-GPVNVELTILKLQHNNLTD--TAWLLNYPG 255 (597)
T ss_dssp SEEECCSS-CCSEE------E-------CCTTCSEEECCSSCCCEE--E-CSCCSCCCEEECCSSCCCC--CGGGGGCTT
T ss_pred hhhhcccC-ccccc------c-------CCchhheeeccCCccccc--c-cccCCCCCEEECCCCCCCC--ChhhccCCC
Confidence 99998876 23211 1 124699999998764332 2 2334689999999987765 357899999
Q ss_pred cceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC
Q 035579 544 LETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 544 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
|+.|++++|.+.+..|..+..+++|++|++++| .+..+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++
T Consensus 256 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred CCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCC
Confidence 999999999999999999999999999999998 66778888888999999999999 5668888888899999999998
Q ss_pred -ccCccccCCCCCceeEEEecCCcchhhhh
Q 035579 624 -ALPSLEEDGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 624 -~~~~l~~~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
.+..++ ...+++|+.|++++|+......
T Consensus 334 N~l~~~~-~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 334 NSIVTLK-LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SCCCCCC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCCcC-hhhcCCCCEEEeeCCCCCChhH
Confidence 666664 4556889999999988765543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-21 Score=201.33 Aligned_cols=288 Identities=14% Similarity=0.172 Sum_probs=169.9
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCC-chhhhcCCCCCcc
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLE 441 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~ 441 (814)
.+++.++++++.+ ..+|..+ .++|+.|++++| .++.++. +..+++|++|++++|. +..+ |..+ ..+++|+
T Consensus 31 c~l~~l~~~~~~l-~~lp~~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~ 103 (330)
T 1xku_A 31 CHLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF--APLVKLE 103 (330)
T ss_dssp EETTEEECTTSCC-CSCCCSC--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT--TTCTTCC
T ss_pred CCCeEEEecCCCc-cccCccC--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh--cCCCCCC
Confidence 3556666665543 3444433 245666666664 3444432 4456666666666666 3333 4444 5667777
Q ss_pred EEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCccccc
Q 035579 442 ILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLE 521 (814)
Q Consensus 442 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 521 (814)
+|++++|. ++.++ .. ..++|+
T Consensus 104 ~L~Ls~n~-l~~l~-----------------------------~~-----------------------------~~~~L~ 124 (330)
T 1xku_A 104 RLYLSKNQ-LKELP-----------------------------EK-----------------------------MPKTLQ 124 (330)
T ss_dssp EEECCSSC-CSBCC-----------------------------SS-----------------------------CCTTCC
T ss_pred EEECCCCc-CCccC-----------------------------hh-----------------------------hccccc
Confidence 77776653 22111 10 012466
Q ss_pred EEEEeccCCcchhhHhhcCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecc
Q 035579 522 SLSVYKCSKLESIAERLDNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599 (814)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 599 (814)
+|++++|......+..+..+++|++|++++|.+.. ..+..+..+++|++|++++| .+..+|..+. ++|++|++++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDG 201 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCC
Confidence 66666665555566678888888888888887753 56677788888888888887 5666776554 6888888888
Q ss_pred ccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 600 CERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
|......|..+..+++|+.|++++ .+..++. ...+++|++|++++|.+... |..+..+++|++|++++| .
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N--~ 274 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-----PGGLADHKYIQVVYLHNN--N 274 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-----CTTTTTCSSCCEEECCSS--C
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-----ChhhccCCCcCEEECCCC--c
Confidence 854444466777777777777777 5554432 23356677777777755422 134666677777777766 5
Q ss_pred CccCCccccccCCCCCCCCCcceEEeccCCCCcc--cc-cccccCCCCCeEEecCC
Q 035579 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLER--LS-SSIVDLQNLTELCLRDC 729 (814)
Q Consensus 677 l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~-~~~~~l~~L~~L~l~~c 729 (814)
+..++...+.........++|+.|++++ |.+.. ++ ..+..+++++.++++++
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~-N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFS-NPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCS-SSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCccChhhcCCcccccccccccceEeec-CcccccccCccccccccceeEEEeccc
Confidence 6666655432111112235666666666 33432 22 35556666666666653
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=201.35 Aligned_cols=286 Identities=12% Similarity=0.092 Sum_probs=152.0
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CCCCCCCCcEEEecccCCCCCC-chhhhcCCCCCccE
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EVALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLEI 442 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~ 442 (814)
+++.++++++.+ ..+|..+ .++|++|++++|. ++.++ .+..+++|++|++++|. +..+ |..+ ..+++|++
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF--SPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS--TTCTTCCE
T ss_pred cCCEEECCCCCc-cccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh--hCcCCCCE
Confidence 456666666553 3444433 2456666666643 33332 24456666666666665 3333 3333 56666666
Q ss_pred EEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE
Q 035579 443 LYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522 (814)
Q Consensus 443 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 522 (814)
|++++|. ++.++.... ++|++
T Consensus 107 L~L~~n~-l~~l~~~~~----------------------------------------------------------~~L~~ 127 (332)
T 2ft3_A 107 LYISKNH-LVEIPPNLP----------------------------------------------------------SSLVE 127 (332)
T ss_dssp EECCSSC-CCSCCSSCC----------------------------------------------------------TTCCE
T ss_pred EECCCCc-CCccCcccc----------------------------------------------------------ccCCE
Confidence 6666643 222111100 23445
Q ss_pred EEEeccCCcchhhHhhcCCCCcceEeecccCCc--ccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 523 LSVYKCSKLESIAERLDNNTSLETIGINFCENL--KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 523 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
|++++|......+..+..+++|+.|++++|.+. +..+..+..+ +|++|++++| .+..+|..+. ++|++|++++|
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSS
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCC
Confidence 555554444333444666777777777777664 2455566666 7777777776 4555665443 47777777777
Q ss_pred cccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 601 ERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 601 ~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
......+..+..+++|+.|++++ .+..++. ...+++|++|++++|.+... |..+..+++|++|++++| .+
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N--~l 276 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-----PAGLPDLKLLQVVYLHTN--NI 276 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-----CTTGGGCTTCCEEECCSS--CC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-----ChhhhcCccCCEEECCCC--CC
Confidence 43333345666666666666666 4444432 23345666666666654422 134566666777777665 55
Q ss_pred ccCCccccccCCCCCCCCCcceEEeccCCCCc--ccc-cccccCCCCCeEEecCC
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGRFPNLE--RLS-SSIVDLQNLTELCLRDC 729 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~-~~~~~l~~L~~L~l~~c 729 (814)
..++...+.........++|+.|+++++ .+. .++ ..+..+++|+.+++++|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CccChhHccccccccccccccceEeecC-cccccccCcccccccchhhhhhcccc
Confidence 5555543211111112355666666663 333 222 35556666666666654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=199.25 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCC
Q 035579 332 CSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP 411 (814)
Q Consensus 332 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 411 (814)
+++++|+++++ .++.++... +..+ ++|++|++++|.+.+..|..+..+++|++|++++| .++.+|... .
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~-~ 120 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGD----FKNL----KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM-P 120 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTT----TTTC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC-C
T ss_pred CCCeEEECCCC-cCCEeChhh----hccC----CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh-c
Confidence 45555555553 344443321 2222 55556666555554444555555555666655553 233444221 2
Q ss_pred CCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecC
Q 035579 412 SKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGC 448 (814)
Q Consensus 412 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 448 (814)
++|++|++++|. +..++...+ ..+++|++|++++|
T Consensus 121 ~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n 155 (330)
T 1xku_A 121 KTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTN 155 (330)
T ss_dssp TTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSS
T ss_pred ccccEEECCCCc-ccccCHhHh-cCCccccEEECCCC
Confidence 555555555555 333333322 45555555555554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.5e-22 Score=205.08 Aligned_cols=247 Identities=14% Similarity=0.071 Sum_probs=191.2
Q ss_pred CccEEeecCCCCcc--cccccCCCcccccEEEEec-cCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEE
Q 035579 495 ILEHLSIVGCPSLT--CIFSKNELPATLESLSVYK-CSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREI 571 (814)
Q Consensus 495 ~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 571 (814)
+++.|+++++...+ .+.......++|++|++++ |...+.+|..++++++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 46666666655443 3233344556889999985 66677888889999999999999999988888889999999999
Q ss_pred EecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCC-CcceEEecC-ccC-cccc-CCCCCceeEEEecCCcc
Q 035579 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLT-SLQELTIGG-ALP-SLEE-DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 572 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~-~~~-~l~~-~~~~~~L~~L~l~~n~~ 647 (814)
++++|.....+|..+..+++|++|++++|.....+|..+..++ +|+.|++++ .+. .++. ...++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 9999855447787888889999999999866558888888888 899999988 443 2222 22334 99999999988
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCc-ccccccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE-RLSSSIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l 726 (814)
....+ ..+..+++|+.|++++| .+...+... ..+++|++|++++ +.++ .+|.++..+++|++|++
T Consensus 210 ~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~-------~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 210 EGDAS----VLFGSDKNTQKIHLAKN--SLAFDLGKV-------GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp EECCG----GGCCTTSCCSEEECCSS--EECCBGGGC-------CCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEEC
T ss_pred cCcCC----HHHhcCCCCCEEECCCC--ceeeecCcc-------cccCCCCEEECcC-CcccCcCChHHhcCcCCCEEEC
Confidence 76544 67889999999999997 554333333 4679999999999 5666 78889999999999999
Q ss_pred cCCCCCCccCCCCCcCCccEEeecCCchhh
Q 035579 727 RDCPKLKYFPEKGLPSSLLRLSILSCPLIE 756 (814)
Q Consensus 727 ~~c~~l~~lp~~~l~~~L~~L~i~~c~~l~ 756 (814)
++|+--..+|...-+++|+.+++.++|.+.
T Consensus 276 s~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 276 SFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cCCcccccCCCCccccccChHHhcCCCCcc
Confidence 996433478876558899999999988654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=199.92 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccccccCCCCcceEE
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELT 620 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 620 (814)
++|++|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|++++| .++.+|..+..+++|+.|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEE
Confidence 34555555555555444445555555555555555 2222322 3444555555555555 3445555555555555555
Q ss_pred ecC-ccCccccCC--------CCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 621 IGG-ALPSLEEDG--------LPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 621 l~~-~~~~l~~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++ .+..++... ..++|+.|++++|+....... +..+..+++|+.+++++|
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~--~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ--PATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC--GGGGTTBCCSTTEEC---
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccC--cccccccchhhhhhcccc
Confidence 554 333332211 134566666666665422111 144556666666666554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=197.53 Aligned_cols=229 Identities=19% Similarity=0.267 Sum_probs=159.3
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC-CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE-VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEIL 443 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 443 (814)
++++.|++++|.+. .+|..+..+++|++|++++|. ++.+|. +..+++|++|++++|. +..+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCEE
Confidence 56777777777653 666666667777777777753 335553 5557777777777776 55666665 667777777
Q ss_pred EEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEE
Q 035579 444 YIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESL 523 (814)
Q Consensus 444 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 523 (814)
++++|+..+.+|.. +....+.+ . ...+++|++|+++++... .+......+++|++|
T Consensus 156 ~L~~n~~~~~~p~~-----~~~~~~~~---------------~---~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 156 SIRACPELTELPEP-----LASTDASG---------------E---HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp EEEEETTCCCCCSC-----SEEEC-CC---------------C---EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred ECCCCCCccccChh-----Hhhccchh---------------h---hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 77777655544432 11110000 0 001123444444443221 212223334578888
Q ss_pred EEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccc
Q 035579 524 SVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERL 603 (814)
Q Consensus 524 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 603 (814)
++++|... .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|+..
T Consensus 212 ~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 88887655 46667889999999999999999999999999999999999999888889988888999999999999899
Q ss_pred ccccccccCCCCcceEEecC
Q 035579 604 EALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 604 ~~lp~~~~~l~~L~~L~l~~ 623 (814)
+.+|..+.++++|+.+++..
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCG
T ss_pred hhccHHHhhccCceEEeCCH
Confidence 99999999999999988876
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=203.02 Aligned_cols=82 Identities=20% Similarity=0.118 Sum_probs=47.1
Q ss_pred ccccEEEeeccCCcc--ccccccCCCCCcceEeeec-CCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCc
Q 035579 365 CRLEYLILSCCEGLV--KLPQSSLSLCSLREIGIYK-CSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSL 440 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L 440 (814)
.+++.|++++|.+.+ .+|..+..+++|++|++++ +.....+| .+..+++|++|++++|...+.+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 457777777777666 6777777777777777774 33222333 24445555555555555323444443 445555
Q ss_pred cEEEEecC
Q 035579 441 EILYIEGC 448 (814)
Q Consensus 441 ~~L~l~~~ 448 (814)
++|++++|
T Consensus 128 ~~L~Ls~N 135 (313)
T 1ogq_A 128 VTLDFSYN 135 (313)
T ss_dssp CEEECCSS
T ss_pred CEEeCCCC
Confidence 55555543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-22 Score=227.98 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=63.1
Q ss_pred hhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcc---
Q 035579 328 LQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVS--- 404 (814)
Q Consensus 328 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--- 404 (814)
...+++|++|+++++ .+..+....+...+..+ ++|++|++++|... .++..+..+++|++|+++++.....
T Consensus 188 ~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~----~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMT-EFAKISPKDLETIARNC----RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHC----TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HhcCCCccEEEeecc-CCCccCHHHHHHHHhhC----CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHH
Confidence 345666777766664 33322222222222222 67777777776643 3556666677777777765332211
Q ss_pred -cCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCC
Q 035579 405 -FPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCR 449 (814)
Q Consensus 405 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 449 (814)
...+..+++|+.|+++++. ...++..+ ..+++|++|++++|.
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL 304 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC
T ss_pred HHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc
Confidence 1234456677777777653 44455544 556777777777765
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=200.11 Aligned_cols=218 Identities=24% Similarity=0.312 Sum_probs=160.4
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
+.++.|++++|... .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++| .+..+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 46777888776544 66777777888888888888777 67777788888888888887 45577777777888888888
Q ss_pred ccccccccccccccC---------CCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCccc
Q 035579 598 FQCERLEALPKGLHN---------LTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR 666 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~---------l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~ 666 (814)
++|...+.+|..+.. +++|++|++++ .+..+|. ...+++|++|++++|.....+ ..+..+++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-----~~l~~l~~L~ 232 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-----PAIHHLPKLE 232 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC-----GGGGGCTTCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc-----hhhccCCCCC
Confidence 888777777776543 77888888877 6655554 445677888888888766432 3467788888
Q ss_pred EEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCC-cCCcc
Q 035579 667 HLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLL 745 (814)
Q Consensus 667 ~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~ 745 (814)
+|++++|. ....+|... ..+++|++|++++|+..+.+|..+..+++|++|++++|+.++.+|.... +++|+
T Consensus 233 ~L~Ls~n~-~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 233 ELDLRGCT-ALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp EEECTTCT-TCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred EEECcCCc-chhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 88888742 556666654 4678888888888777778887788888888888888888888876322 66777
Q ss_pred EEeecC
Q 035579 746 RLSILS 751 (814)
Q Consensus 746 ~L~i~~ 751 (814)
.+++..
T Consensus 305 ~l~l~~ 310 (328)
T 4fcg_A 305 IILVPP 310 (328)
T ss_dssp EEECCG
T ss_pred EEeCCH
Confidence 776654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-22 Score=225.82 Aligned_cols=226 Identities=21% Similarity=0.152 Sum_probs=131.8
Q ss_pred cccEEEEeccCCcchhhHhhc-----CCCCcceEeecccCCccc----ccccCCCCCCccEEEecCCCCceec------C
Q 035579 519 TLESLSVYKCSKLESIAERLD-----NNTSLETIGINFCENLKI----LPSGLHNLRQLREITIQRCGNLVSF------P 583 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~------~ 583 (814)
+|++|++++|......+..+. ..++|++|++++|.+... ++..+..+++|++|++++|. ++.. +
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 249 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCP 249 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHH
Confidence 455555555554333222222 245666666666665542 34555566667777776663 2221 1
Q ss_pred CCCCCCCCcceEeecccccccc-----ccccccCCCCcceEEecC-ccCc-----ccc--CCCCCceeEEEecCCcchhh
Q 035579 584 EGGLPCAKLSELRIFQCERLEA-----LPKGLHNLTSLQELTIGG-ALPS-----LEE--DGLPTNLHSLDIRGNMEIWK 650 (814)
Q Consensus 584 ~~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~-~~~~-----l~~--~~~~~~L~~L~l~~n~~~~~ 650 (814)
..+..+++|++|++++| .++. ++..+..+++|++|++++ .+.. +.. ....++|++|++++|.....
T Consensus 250 ~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 11223566777777776 3333 455566667777777776 3321 111 11236889999999987655
Q ss_pred hhhhcccccCCCCcccEEEEecCCCCCccCCc-cccccCCCC-CCCCCcceEEeccCCCCc-----ccccccccCCCCCe
Q 035579 651 SMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP-EDKRLGTAL-PLPASLTDLEIGRFPNLE-----RLSSSIVDLQNLTE 723 (814)
Q Consensus 651 ~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~-~~~~~~~~~-~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~ 723 (814)
.....+..+..+++|++|++++| .+..... ... ..+ ...++|++|++++ +.++ .+|..+..+++|++
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~---~~l~~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNN--RLEDAGVRELC---QGLGQPGSVLRVLWLAD-CDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHH---HHHTSTTCCCCEEECTT-SCCCHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHHhhCCCccEEEccCC--ccccccHHHHH---HHHcCCCCceEEEECCC-CCCChhhHHHHHHHHHhCCCccE
Confidence 33222345677889999999987 4433211 110 000 1257899999999 4677 67778888999999
Q ss_pred EEecCCCCCCccCCCC-------CcCCccEEeecCCc
Q 035579 724 LCLRDCPKLKYFPEKG-------LPSSLLRLSILSCP 753 (814)
Q Consensus 724 L~l~~c~~l~~lp~~~-------l~~~L~~L~i~~c~ 753 (814)
|++++| .++...... ....|+.|++.++.
T Consensus 403 L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 403 LDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp EECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred EECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 999996 565432111 12367777777654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-21 Score=225.24 Aligned_cols=402 Identities=13% Similarity=0.115 Sum_probs=227.2
Q ss_pred CCCCcceEEEcCCCCcchh------cc-----chhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhcccc-ccE
Q 035579 302 RLPKLEELKINDMKEQTYM------WK-----SHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCR-LEY 369 (814)
Q Consensus 302 ~~~~L~~L~~~~l~~~~~~------~~-----~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~-L~~ 369 (814)
.+++++.|.+.++...... |. ........+++|++|++++| .+..... ..+...+++ |++
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~-------~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL-------DRLAKARADDLET 142 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH-------HHHHHHHGGGCCE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH-------HHHHHhccccCcE
Confidence 4677777777655432210 00 12233447889999999987 3433222 112221244 999
Q ss_pred EEeeccCCcc--ccccccCCCCCcceEeeecCCCCcccC-----C-CCCCCCCcEEEecccCCCC-----CCchhhhcCC
Q 035579 370 LILSCCEGLV--KLPQSSLSLCSLREIGIYKCSSLVSFP-----E-VALPSKLEKIHIGACDALK-----SLPEAWMCDT 436 (814)
Q Consensus 370 L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~l~~~~-----~-~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~ 436 (814)
|++++|.... .++.....+++|++|+|++|.. +... . ...+++|++|++++|. +. .++..+ ..
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~--~~ 218 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIA--RN 218 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHH--HH
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHH--hh
Confidence 9998887322 2233334788999999988742 2221 1 1247889999998887 43 222222 56
Q ss_pred CCCccEEEEecCCCCccccc-ccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCC
Q 035579 437 NSSLEILYIEGCRSLTYIAA-VQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNE 515 (814)
Q Consensus 437 l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 515 (814)
+++|++|++++|. +..++. ....++|++|.+..+.... ..+........+++|+.+.++++.. ..+.....
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~ 290 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDI------GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP 290 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCT------TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG
T ss_pred CCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccccc------chHHHHHHhhccccccccCccccch-hHHHHHHh
Confidence 7889999998865 333332 2334668888887543221 1122222333446788888877422 22122233
Q ss_pred CcccccEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecC----------CCCcee--c
Q 035579 516 LPATLESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQR----------CGNLVS--F 582 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~----------~~~l~~--~ 582 (814)
..++|++|++++|..... ++..+..+++|+.|+++++.....++.....+++|++|++++ |..++. +
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 456788888888874333 334567888888888884333334444445678888888884 444432 1
Q ss_pred CCCCCCCCCcceEeeccccccccccccccC-CCCcceEEecC-----ccCccc------c-CCCCCceeEEEecCCcc--
Q 035579 583 PEGGLPCAKLSELRIFQCERLEALPKGLHN-LTSLQELTIGG-----ALPSLE------E-DGLPTNLHSLDIRGNME-- 647 (814)
Q Consensus 583 ~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~-l~~L~~L~l~~-----~~~~l~------~-~~~~~~L~~L~l~~n~~-- 647 (814)
+.....+++|++|+++.+......+..+.. +++|+.|++++ .+...| . ...+++|++|+++.|..
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 112234678888888555333333334433 77888888852 333221 1 12257788888876542
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcc--cccccccCCCCCeEE
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLER--LSSSIVDLQNLTELC 725 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~ 725 (814)
...... .....+++|++|++++|...-..++... ..+++|++|++++|+ ++. ++.....+++|++|+
T Consensus 451 ~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 451 TDLGLS---YIGQYSPNVRWMLLGYVGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp CHHHHH---HHHHSCTTCCEEEECSCCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEE
T ss_pred cHHHHH---HHHHhCccceEeeccCCCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeE
Confidence 222221 1223467788888877621111222222 346778888888865 442 343445677888888
Q ss_pred ecCCCCCCcc
Q 035579 726 LRDCPKLKYF 735 (814)
Q Consensus 726 l~~c~~l~~l 735 (814)
+++|+ ++..
T Consensus 520 ls~n~-it~~ 528 (592)
T 3ogk_B 520 VQGYR-ASMT 528 (592)
T ss_dssp EESCB-CCTT
T ss_pred CcCCc-CCHH
Confidence 88865 5543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-19 Score=194.84 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=88.4
Q ss_pred HhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-cccCC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK-GLHNL 613 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l 613 (814)
..|.++++|++|++++|.+....+..+..+++|++|++++| .+..++. .+..+++|++|++++|+.+..++. .+.++
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 33444444444444444444433334444555555555544 2233332 344444555555554444444433 34445
Q ss_pred CCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCC
Q 035579 614 TSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALP 692 (814)
Q Consensus 614 ~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~ 692 (814)
++|+.|++++ .+..++....+++|++|++++|.+....+ ..|..+++|+.|++++| .+..++...+ .
T Consensus 185 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~~------~ 252 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQS--QIQVIERNAF------D 252 (440)
T ss_dssp SSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTC--CCCEECTTSS------T
T ss_pred cccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCC--ceeEEChhhh------c
Confidence 5555555554 44444444445555555555555444322 44555666666666654 4444443321 3
Q ss_pred CCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCC
Q 035579 693 LPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDC 729 (814)
Q Consensus 693 ~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c 729 (814)
.+++|++|+|++ |.++.+|. .+..+++|+.|+++++
T Consensus 253 ~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 253 NLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCC
Confidence 455666666666 45555554 3455566666666554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=190.72 Aligned_cols=274 Identities=14% Similarity=0.118 Sum_probs=159.3
Q ss_pred CCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceee
Q 035579 388 LCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQ 467 (814)
Q Consensus 388 l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 467 (814)
|+.....+.++ +.++.+|. ...++|++|++++|. +..++...+ ..+++|++|++++|. ++.++.
T Consensus 30 C~~~~~c~~~~-~~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~----------- 93 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPS-GLTEAVKSLDLSNNR-ITYISNSDL-QRCVNLQALVLTSNG-INTIEE----------- 93 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCT-TCCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTSC-CCEECT-----------
T ss_pred CCCCeEeeCCC-CCcccccc-cccccCcEEECCCCc-CcccCHHHh-ccCCCCCEEECCCCc-cCccCH-----------
Confidence 44445556665 35566664 234577777777776 555554322 666777777776653 221110
Q ss_pred eccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceE
Q 035579 468 IHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETI 547 (814)
Q Consensus 468 l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 547 (814)
. .....++|++|++++|......+..++.+++|++|
T Consensus 94 -----------------~---------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 94 -----------------D---------------------------SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp -----------------T---------------------------TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred -----------------h---------------------------hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 0 00112356666666665554444457778888888
Q ss_pred eecccCCccccc-ccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeeccccccccccccccCCCCcceEEecCcc
Q 035579 548 GINFCENLKILP-SGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGAL 625 (814)
Q Consensus 548 ~L~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 625 (814)
++++|.+....+ ..+..+++|++|++++|..+..++ ..+..+++|++|++++|......|..+..+++|++|++
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l---- 205 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL---- 205 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE----
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC----
Confidence 888877765433 367777788888887775555554 35667777777777777544444555555555555555
Q ss_pred CccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccC
Q 035579 626 PSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRF 705 (814)
Q Consensus 626 ~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~ 705 (814)
++|....... ..+..+++|++|++++| .+..++..... .....+.++.++++++
T Consensus 206 -----------------~~n~l~~~~~----~~~~~~~~L~~L~L~~n--~l~~~~~~~l~---~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 206 -----------------HMKQHILLLE----IFVDVTSSVECLELRDT--DLDTFHFSELS---TGETNSLIKKFTFRNV 259 (353)
T ss_dssp -----------------ECSCSTTHHH----HHHHHTTTEEEEEEESC--BCTTCCCC---------CCCCCCEEEEESC
T ss_pred -----------------CCCccccchh----hhhhhcccccEEECCCC--ccccccccccc---cccccchhhccccccc
Confidence 4444322221 22334556666666654 33333322100 0023455666666663
Q ss_pred CCCc-----ccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 706 PNLE-----RLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 706 ~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
.+. .+|.++..+++|+.|++++| +++.+|...+ +++|++|++++||
T Consensus 260 -~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 -KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 333 46667788888888888884 7888887543 6788888888875
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=191.07 Aligned_cols=277 Identities=15% Similarity=0.111 Sum_probs=160.8
Q ss_pred CCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CC
Q 035579 331 ICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EV 408 (814)
Q Consensus 331 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~ 408 (814)
++.....+.++ ..++.+|.. ++++|++|++++|.+....+..+..+++|++|++++| .++.++ .+
T Consensus 30 C~~~~~c~~~~-~~l~~iP~~-----------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPSG-----------LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSF 96 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCTT-----------CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTT
T ss_pred CCCCeEeeCCC-CCccccccc-----------ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhc
Confidence 34444455555 366666653 2368888888888875554557888888888888886 444443 26
Q ss_pred CCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCC
Q 035579 409 ALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSS 488 (814)
Q Consensus 409 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 488 (814)
..+++|++|++++|. +..++...+ ..+++|++|++++|. ++.++..
T Consensus 97 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~l~~~------------------------------- 142 (353)
T 2z80_A 97 SSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTFLNLLGNP-YKTLGET------------------------------- 142 (353)
T ss_dssp TTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSEEECTTCC-CSSSCSS-------------------------------
T ss_pred CCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCEEECCCCC-CcccCch-------------------------------
Confidence 667888888888887 666766533 778888888888764 2211110
Q ss_pred CCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchh-hHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 489 SRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESI-AERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 489 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
......++|++|++++|+..+.+ +..+..+++|++|++++|.+.+..|..+..+++
T Consensus 143 -----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 143 -----------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp -----------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred -----------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 00011235666666666433333 445677777777777777777766777777777
Q ss_pred ccEEEecCCCCceecCCCC-CCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCc
Q 035579 568 LREITIQRCGNLVSFPEGG-LPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
|++|++++|. +..+|..+ ..+++|++|++++|. ++.++. ..++.....+.++.++++++.
T Consensus 200 L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-----------------~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 200 VSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHF-----------------SELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCC-----------------C------CCCCCCEEEEESCB
T ss_pred CCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccc-----------------cccccccccchhhcccccccc
Confidence 7777777763 34444322 235566666666663 222210 001111224556667777766
Q ss_pred chhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEecc
Q 035579 647 EIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGR 704 (814)
Q Consensus 647 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~ 704 (814)
.........+..+..+++|++|++++| .+..+|...+ ..+++|++|++++
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N--~l~~i~~~~~------~~l~~L~~L~L~~ 310 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRN--QLKSVPDGIF------DRLTSLQKIWLHT 310 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCC--CCCccCHHHH------hcCCCCCEEEeeC
Confidence 554433222344556666666666665 4445555431 2345555555555
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-19 Score=194.04 Aligned_cols=179 Identities=23% Similarity=0.251 Sum_probs=87.2
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-cccCCCC
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK-GLHNLTS 615 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~ 615 (814)
+.++++|++|++++|.+....+..+..+++|++|++++| .+..+|. .+..+++|++|++++|+.++.++. .+..+++
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 344444444444444444333334444444444444444 2233332 334444444444444444444433 2444445
Q ss_pred cceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCC
Q 035579 616 LQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLP 694 (814)
Q Consensus 616 L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~ 694 (814)
|+.|++++ .+..++....+++|++|++++|.+....+ ..|..+++|+.|++++| .+..++...+ ..+
T Consensus 198 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n--~l~~~~~~~~------~~l 265 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNS--QVSLIERNAF------DGL 265 (452)
T ss_dssp CCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTS--CCCEECTTTT------TTC
T ss_pred CCEEECCCCcccccccccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCC--cCceECHHHh------cCC
Confidence 55555544 44444444445556666666665544333 44556666666666665 4444433321 345
Q ss_pred CCcceEEeccCCCCccccc-ccccCCCCCeEEecCCC
Q 035579 695 ASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCP 730 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 730 (814)
++|+.|++++ |.++.+|. .+..+++|+.|++++++
T Consensus 266 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 6666666666 45555554 34556666666666543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-22 Score=218.43 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=62.2
Q ss_pred hhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCcc----ccccccCCCCCcceEeeecCCC
Q 035579 326 ELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLV----KLPQSSLSLCSLREIGIYKCSS 401 (814)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~ 401 (814)
..+..+++|++|+++++ .+.......+ ...+....++|++|++++|.+.. .++..+..+++|++|++++|.
T Consensus 50 ~~l~~~~~L~~L~Ls~n-~l~~~~~~~l---~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 124 (461)
T 1z7x_W 50 SALRVNPALAELNLRSN-ELGDVGVHCV---LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL- 124 (461)
T ss_dssp HHHHTCTTCCEEECTTC-CCHHHHHHHH---HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-
T ss_pred HHHHhCCCcCEEeCCCC-cCChHHHHHH---HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-
Confidence 34456677777777774 3433221111 11110001157777777777652 446667777777777777764
Q ss_pred CcccC--C-----CCCCCCCcEEEecccCCCCCC-----chhhhcCCCCCccEEEEecCC
Q 035579 402 LVSFP--E-----VALPSKLEKIHIGACDALKSL-----PEAWMCDTNSSLEILYIEGCR 449 (814)
Q Consensus 402 l~~~~--~-----~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~L~~L~l~~~~ 449 (814)
++... . ....++|++|++++|. +... +..+ ..+++|++|++++|.
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVL--RAKPDFKELTVSNND 181 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH--HHCTTCCEEECCSSB
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHH--hhCCCCCEEECcCCC
Confidence 33211 0 1124567777777776 3331 2222 446777777777754
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.6e-19 Score=194.09 Aligned_cols=220 Identities=19% Similarity=0.199 Sum_probs=186.4
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcce
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSE 594 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~ 594 (814)
++++++.|++++|......+..|.++++|+.|++++|.+.+..+..+..+++|++|++++| .+..+|. .+..+++|++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCE
Confidence 3457899999998887777888999999999999999999988899999999999999998 5666765 4778999999
Q ss_pred Eeecccccccccc-ccccCCCCcceEEecC--ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEE
Q 035579 595 LRIFQCERLEALP-KGLHNLTSLQELTIGG--ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 669 (814)
Q Consensus 595 L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~--~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~ 669 (814)
|++++|. ++.+| ..+.++++|+.|++++ .+..++. ...+++|++|++++|.+... ..+..+++|++|+
T Consensus 152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELE 224 (452)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEE
T ss_pred EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------ccccccccccEEE
Confidence 9999995 55554 4788999999999997 5665554 45579999999999987654 3578999999999
Q ss_pred EecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccE
Q 035579 670 IDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLR 746 (814)
Q Consensus 670 l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~ 746 (814)
+++| .+..++...+ ..+++|+.|++++ +.++.++. .+..+++|+.|++++| +++.+|...+ +++|++
T Consensus 225 Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 225 MSGN--HFPEIRPGSF------HGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp CTTS--CCSEECGGGG------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCE
T ss_pred CcCC--cCcccCcccc------cCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCE
Confidence 9997 6777765542 5789999999999 67887755 7889999999999995 8999988665 789999
Q ss_pred EeecCCc
Q 035579 747 LSILSCP 753 (814)
Q Consensus 747 L~i~~c~ 753 (814)
|++++||
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9999986
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-22 Score=228.96 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++|+.|++++|........ .....+++|++|++++|
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~---~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMH---HVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHH---HHHHHCTTCCEEEEESC
T ss_pred chhccEeeccCCCCcHHHHH---HHHhcCCCcCEEECcCC
Confidence 46677777777765443321 11244667777777775
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-18 Score=193.15 Aligned_cols=256 Identities=29% Similarity=0.354 Sum_probs=141.8
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
.+++.|++++|.+ ..+|..+. ++|++|++++| .++.+|. .+++|++|++++|. +..+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 4588888888876 46676554 78888888885 5666765 57888888888887 666665 357888888
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++. .+++|+.|+++++ .++ .+|. .+++|+.|+
T Consensus 108 Ls~N~-l~~l~~--~l~~L~~L~L~~N-~l~------~lp~------------------------------~l~~L~~L~ 147 (622)
T 3g06_A 108 IFSNP-LTHLPA--LPSGLCKLWIFGN-QLT------SLPV------------------------------LPPGLQELS 147 (622)
T ss_dssp ECSCC-CCCCCC--CCTTCCEEECCSS-CCS------CCCC------------------------------CCTTCCEEE
T ss_pred CcCCc-CCCCCC--CCCCcCEEECCCC-CCC------cCCC------------------------------CCCCCCEEE
Confidence 88753 443332 3333444444333 111 1111 012344444
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+++|... .+|. .+.+|+.|++++|.+.+ +| ..+++|+.|++++| .+..+|.. +++|+.|++++|
T Consensus 148 Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N---- 211 (622)
T 3g06_A 148 VSDNQLA-SLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN---- 211 (622)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS----
T ss_pred CcCCcCC-CcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC----
Confidence 4443222 1221 12344445555444443 22 22344444555444 23333321 134444444444
Q ss_pred cccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccc
Q 035579 605 ALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPED 684 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~ 684 (814)
.+..++. .+++|++|++++|.+...+ ..+++|+.|++++| .+..+|.
T Consensus 212 -------------------~l~~l~~--~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N--~L~~lp~-- 258 (622)
T 3g06_A 212 -------------------RLTSLPA--LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGN--RLTSLPM-- 258 (622)
T ss_dssp -------------------CCSSCCC--CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS--CCSCCCC--
T ss_pred -------------------cccccCC--CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCC--CCCcCCc--
Confidence 3333332 2356666666666544321 24466777777775 5556665
Q ss_pred cccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCC
Q 035579 685 KRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCP 730 (814)
Q Consensus 685 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (814)
.+++|+.|++++ |.++.+|..+..+++|+.|++++|+
T Consensus 259 --------~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 --------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --------CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred --------ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCC
Confidence 246777777777 5677777777777777777777753
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-19 Score=192.17 Aligned_cols=220 Identities=18% Similarity=0.214 Sum_probs=186.0
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcce
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSE 594 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~ 594 (814)
++++++.|++++|......+..|.++++|++|++++|.+....+..+..+++|++|++++| .++.++. .+..+++|++
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCce
Confidence 3457889999998877777788999999999999999999888889999999999999998 6667765 5888999999
Q ss_pred Eeecccccccccc-ccccCCCCcceEEecC--ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEE
Q 035579 595 LRIFQCERLEALP-KGLHNLTSLQELTIGG--ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 669 (814)
Q Consensus 595 L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~--~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~ 669 (814)
|++++|. ++.+| ..+..+++|+.|++++ .+..++. ...+++|++|++++|.+... ..+..+++|++|+
T Consensus 141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELD 213 (440)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------CCCTTCSSCCEEE
T ss_pred eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------cccCCCcccCEEE
Confidence 9999995 55554 4788999999999997 5555554 45579999999999987654 3578999999999
Q ss_pred EecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccE
Q 035579 670 IDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLR 746 (814)
Q Consensus 670 l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~ 746 (814)
+++| .+..++...+ ..+++|+.|++++ +.++.++. .+..+++|+.|++++| +++.+|...+ +++|++
T Consensus 214 Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 214 LSGN--HLSAIRPGSF------QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CTTS--CCCEECTTTT------TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCE
T ss_pred CCCC--ccCccChhhh------ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCE
Confidence 9997 7777755442 5789999999999 78888866 7889999999999994 8999988665 789999
Q ss_pred EeecCCc
Q 035579 747 LSILSCP 753 (814)
Q Consensus 747 L~i~~c~ 753 (814)
|++++||
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 9999987
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-20 Score=191.61 Aligned_cols=235 Identities=12% Similarity=0.087 Sum_probs=147.7
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
++|++|++++|.+....|..+..+++|++|++++|. ++..+++..+++|++|++++|. +..++. .++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~------~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV------GPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEE------CTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccC------CCCcCEEE
Confidence 678888888887766666677788888888888754 3434446667777777777776 443332 35666666
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++.. .+++|+.|+
T Consensus 106 l~~n~-l~~~~~~----------------------------------------------------------~~~~L~~L~ 126 (317)
T 3o53_A 106 AANNN-ISRVSCS----------------------------------------------------------RGQGKKNIY 126 (317)
T ss_dssp CCSSC-CSEEEEC----------------------------------------------------------CCSSCEEEE
T ss_pred CCCCc-cCCcCcc----------------------------------------------------------ccCCCCEEE
Confidence 66643 1111100 012455666
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccC-CCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGL-HNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERL 603 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 603 (814)
+++|......+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++| .+..++.. ..+++|++|++++| .+
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~Ls~N-~l 203 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSN-KL 203 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSS-CC
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEECCCC-cC
Confidence 66655555455566777777777777777776655555 35777888888777 45555432 33677888888877 55
Q ss_pred ccccccccCCCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 604 EALPKGLHNLTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 604 ~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
+.+|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+....... ..+..+++|+.+++++
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHHHHHH
T ss_pred CcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEEECCC
Confidence 56666677777777777777 5555544 34457777777777776622221 3456666677766664
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-21 Score=225.07 Aligned_cols=122 Identities=14% Similarity=0.193 Sum_probs=56.2
Q ss_pred hhhcCCCCCeEEEecCCCcccchh------hHHHHHHHHhhhccccccEEEeeccCCccccccccC-CCCCcceEeeecC
Q 035579 327 LLQDICSLRRLTIRSCPKLQSLVA------EEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSL-SLCSLREIGIYKC 399 (814)
Q Consensus 327 ~~~~l~~L~~L~l~~~~~l~~l~~------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~ 399 (814)
.+..+++|++|++++|+.+..+.. .....++..+...+++|++|++++|.+....+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 345566666666666554432210 000111222222335666666666654443333333 4566666666665
Q ss_pred CCCcc--cCCCC-CCCCCcEEEecccCCCCCCchhhh---cCCCCCccEEEEecCC
Q 035579 400 SSLVS--FPEVA-LPSKLEKIHIGACDALKSLPEAWM---CDTNSSLEILYIEGCR 449 (814)
Q Consensus 400 ~~l~~--~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~ 449 (814)
..++. ++.+. .+++|++|++++|. +......++ ...+++|++|++++|.
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 44333 22222 35566666666665 222111100 0345566666666554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=181.52 Aligned_cols=222 Identities=17% Similarity=0.144 Sum_probs=163.1
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcce
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSE 594 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 594 (814)
++++++|++++|......+..+.++++|++|++++|.+.. ..+..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 3467777777766553333446788888888888887763 23455666788888888887 56667777777888888
Q ss_pred Eeecccccccccc--ccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEE
Q 035579 595 LRIFQCERLEALP--KGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 669 (814)
Q Consensus 595 L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~ 669 (814)
|++++| .++.++ ..+..+++|++|++++ .+..... ...+++|++|++++|....... +..+..+++|++|+
T Consensus 106 L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 106 LDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLD 181 (306)
T ss_dssp EECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEE
T ss_pred EECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc---hhHHhhCcCCCEEE
Confidence 888887 444444 3677888888888887 4443332 3456889999999998765222 15788999999999
Q ss_pred EecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC---cCCcc
Q 035579 670 IDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL---PSSLL 745 (814)
Q Consensus 670 l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L~ 745 (814)
+++| .+..++... +..+++|++|++++ +.++.++. .+..+++|+.|++++| .++..+...+ +++|+
T Consensus 182 Ls~n--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 182 LSQC--QLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp CTTS--CCCEECTTT------TTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCC
T ss_pred CCCC--CcCCcCHHH------hcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCC
Confidence 9997 666664433 25689999999999 67888876 7788999999999996 5666654333 46999
Q ss_pred EEeecCCc
Q 035579 746 RLSILSCP 753 (814)
Q Consensus 746 ~L~i~~c~ 753 (814)
+|++++|+
T Consensus 252 ~L~L~~N~ 259 (306)
T 2z66_A 252 FLNLTQND 259 (306)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 99999986
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.2e-18 Score=175.16 Aligned_cols=176 Identities=18% Similarity=0.120 Sum_probs=93.6
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCccccc-ccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILP-SGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
|++|++++|.. ..++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 80 L~~L~Ls~n~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 80 LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 44444444322 2344445566666666666666655433 456666677777776664433344455566667777776
Q ss_pred cccccc-cccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 599 QCERLE-ALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 599 ~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
+|.... .+|..+..+++|+.|++++ |.+....+ ..+..+++|++|++++| .+
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~---------------------n~l~~~~~----~~~~~l~~L~~L~L~~N--~l 211 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQ---------------------CQLEQLSP----TAFNSLSSLQVLNMSHN--NF 211 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTT---------------------SCCCEECT----TTTTTCTTCCEEECTTS--CC
T ss_pred CCccccccchhHHhhCcCCCEEECCC---------------------CCcCCcCH----HHhcCCCCCCEEECCCC--cc
Confidence 664332 2455555444444444443 33322211 34455566666666655 44
Q ss_pred ccCCccccccCCCCCCCCCcceEEeccCCCCccc-ccccccCC-CCCeEEecCCC
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL-SSSIVDLQ-NLTELCLRDCP 730 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~-~L~~L~l~~c~ 730 (814)
..++.... ..+++|+.|++++ +.++.. |..+..++ +|++|++++++
T Consensus 212 ~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 212 FSLDTFPY------KCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SBCCSGGG------TTCTTCCEEECTT-SCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CccChhhc------cCcccCCEeECCC-CCCcccCHHHHHhhhccCCEEEccCCC
Confidence 44444321 3456666666666 344443 33555663 77777777753
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=186.82 Aligned_cols=254 Identities=26% Similarity=0.339 Sum_probs=170.1
Q ss_pred CcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeec
Q 035579 390 SLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIH 469 (814)
Q Consensus 390 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 469 (814)
+++.|+++++ .++.+|... +++|+.|++++|. +..+|. .+++|++|++++|. ++.++. .+++|+.
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~---- 105 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLE---- 105 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCC-CTTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCCCC--CCTTCCE----
T ss_pred CCcEEEecCC-CcCccChhh-CCCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcCCC--CCCCCCE----
Confidence 5788888885 566776422 3788888888887 666665 25788888888864 443332 2222333
Q ss_pred cccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEee
Q 035579 470 GCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGI 549 (814)
Q Consensus 470 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 549 (814)
|++++|... .+|. .+++|+.|++
T Consensus 106 -----------------------------------------------------L~Ls~N~l~-~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 106 -----------------------------------------------------LSIFSNPLT-HLPA---LPSGLCKLWI 128 (622)
T ss_dssp -----------------------------------------------------EEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred -----------------------------------------------------EECcCCcCC-CCCC---CCCCcCEEEC
Confidence 333332211 1221 3345555555
Q ss_pred cccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcc
Q 035579 550 NFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSL 628 (814)
Q Consensus 550 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l 628 (814)
++|.+.. +|.. +++|++|++++| .+..+|.. +++|+.|++++| .++.+| ..+++|+.|++++ .+..+
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCC
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCCCC
Confidence 5555443 2222 366677777766 44445432 346777777766 455565 3456777777777 55555
Q ss_pred ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCC
Q 035579 629 EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNL 708 (814)
Q Consensus 629 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l 708 (814)
+. .+++|+.|++++|.+.... ..+++|+.|++++| .+..+|. .+++|+.|++++ |.+
T Consensus 197 ~~--~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N--~L~~lp~----------~l~~L~~L~Ls~-N~L 253 (622)
T 3g06_A 197 PT--LPSELYKLWAYNNRLTSLP--------ALPSGLKELIVSGN--RLTSLPV----------LPSELKELMVSG-NRL 253 (622)
T ss_dssp CC--CCTTCCEEECCSSCCSSCC--------CCCTTCCEEECCSS--CCSCCCC----------CCTTCCEEECCS-SCC
T ss_pred CC--ccchhhEEECcCCcccccC--------CCCCCCCEEEccCC--ccCcCCC----------CCCcCcEEECCC-CCC
Confidence 43 3589999999999876532 13589999999998 7788883 368999999999 789
Q ss_pred cccccccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCch
Q 035579 709 ERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCPL 754 (814)
Q Consensus 709 ~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~~ 754 (814)
+.+|. .+++|+.|++++| +++.+|.... +++|+.|++++|+.
T Consensus 254 ~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 254 TSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 99996 6789999999995 7889986422 78999999999973
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=193.30 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=165.3
Q ss_pred HHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCC
Q 035579 357 QQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDT 436 (814)
Q Consensus 357 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 436 (814)
+..+...+++|++|+|++|.+.+..|..+..+++|++|+|++|. ++..+++..+++|++|++++|. +..++.
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------ 97 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV------ 97 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE------
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC------
Confidence 33333334689999999998877777788889999999998864 4444446677888888888876 444432
Q ss_pred CCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCC
Q 035579 437 NSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNEL 516 (814)
Q Consensus 437 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 516 (814)
.++|++|++++|. ++.++.. .
T Consensus 98 ~~~L~~L~L~~N~-l~~~~~~----------------------------------------------------------~ 118 (487)
T 3oja_A 98 GPSIETLHAANNN-ISRVSCS----------------------------------------------------------R 118 (487)
T ss_dssp CTTCCEEECCSSC-CCCEEEC----------------------------------------------------------C
T ss_pred CCCcCEEECcCCc-CCCCCcc----------------------------------------------------------c
Confidence 2566777776653 1111100 1
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCC-CCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLH-NLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
+++|+.|++++|......|..++.+++|+.|++++|.+.+..|..+. .+++|++|++++| .+..+|. ...+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCEE
Confidence 13566777777666666666778888888888888888887777665 6888888888887 4555553 3347788888
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEe
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~ 671 (814)
++++| .++.+|..+..+++|+.|++++ .+..+|. ...+++|+.|++++|+......+ ..+..++.|+.++++
T Consensus 197 ~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 197 DLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHHHHHHHHH
T ss_pred ECCCC-CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCCCcEEecc
Confidence 88888 5666666677888888888887 6666554 44567888888888877632221 345666777766664
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-18 Score=174.97 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=114.6
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceec-CCCCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSF-PEGGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L 595 (814)
+++++.|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 456777777776665555566777777777777777777666777777777777777777545555 4456667777777
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCC
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCD 674 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 674 (814)
++++|......|..+..+++|++|++++ .+..++. ..+..+++|++|++++|
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~l~~L~~L~l~~n- 163 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--------------------------DTFRDLGNLTHLFLHGN- 163 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCSS-
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH--------------------------hHhccCCCccEEECCCC-
Confidence 7777744443355566666666666655 4444332 22444445555555544
Q ss_pred CCCccCCccccccCCCCCCCCCcceEEeccCCCCccc-ccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecC
Q 035579 675 DDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL-SSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILS 751 (814)
Q Consensus 675 ~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~ 751 (814)
.+..++.... ..+++|++|++++ +.++.+ |..+..+++|+.|++++| +++.++...+ +++|++|++++
T Consensus 164 -~l~~~~~~~~------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 164 -RISSVPERAF------RGLHSLDRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp -CCCEECTTTT------TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred -cccccCHHHh------cCccccCEEECCC-CcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence 3444443321 2345555555555 334443 334455555555555553 4444443211 44555555555
Q ss_pred Cc
Q 035579 752 CP 753 (814)
Q Consensus 752 c~ 753 (814)
||
T Consensus 235 N~ 236 (285)
T 1ozn_A 235 NP 236 (285)
T ss_dssp SC
T ss_pred CC
Confidence 44
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=181.56 Aligned_cols=215 Identities=14% Similarity=0.136 Sum_probs=172.6
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
.+++|++|++++|......|..+..+++|++|++++|.+.+..+ +..+++|++|++++| .++.++. .++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC----CCCcCEE
Confidence 35689999999988877778889999999999999999887654 888999999999998 5666653 3799999
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
++++| .+..++. ..+++|+.|++++ .+..++. ...+++|++|++++|.+....+. .....+++|++|++++
T Consensus 105 ~l~~n-~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 105 HAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQY 178 (317)
T ss_dssp ECCSS-CCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTT
T ss_pred ECCCC-ccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---HHhhccCcCCEEECCC
Confidence 99998 4555443 3468899999999 7776654 33478999999999987765442 2234789999999999
Q ss_pred CCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCC-CcCCccEEeecC
Q 035579 673 CDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKG-LPSSLLRLSILS 751 (814)
Q Consensus 673 ~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-l~~~L~~L~i~~ 751 (814)
| .+..++... .+++|++|++++ +.++.+|..+..+++|++|++++| .++.+|... .+++|+.|++++
T Consensus 179 N--~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 179 N--FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp S--CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred C--cCccccccc--------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccC
Confidence 7 677775543 489999999999 789999888889999999999995 788888742 278999999999
Q ss_pred Cchh
Q 035579 752 CPLI 755 (814)
Q Consensus 752 c~~l 755 (814)
|+..
T Consensus 247 N~~~ 250 (317)
T 3o53_A 247 NGFH 250 (317)
T ss_dssp CCCB
T ss_pred CCcc
Confidence 8743
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.4e-18 Score=173.06 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=157.7
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
++++.++ ..++.+|.. ..+++++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 14 ~~~~c~~-~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCS-SCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCc-CCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 3445444 234445533 3467888888888888777777888888888888887433333566777888888888888
Q ss_pred cccccc-cccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc
Q 035579 601 ERLEAL-PKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS 679 (814)
Q Consensus 601 ~~l~~l-p~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~ 679 (814)
..++.+ |..+..++ +|++|++++|......+ ..+..+++|++|++++| .+..
T Consensus 91 ~~l~~~~~~~~~~l~---------------------~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~ 143 (285)
T 1ozn_A 91 AQLRSVDPATFHGLG---------------------RLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDN--ALQA 143 (285)
T ss_dssp TTCCCCCTTTTTTCT---------------------TCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSS--CCCC
T ss_pred CCccccCHHHhcCCc---------------------CCCEEECCCCcCCEECH----hHhhCCcCCCEEECCCC--cccc
Confidence 545555 44555544 45555555555443322 55788999999999997 6777
Q ss_pred CCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCchhh
Q 035579 680 FPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPLIE 756 (814)
Q Consensus 680 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~l~ 756 (814)
++.... ..+++|++|++++ +.++.++. .+..+++|++|++++| .++.++...+ +++|++|++++|.--.
T Consensus 144 ~~~~~~------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 144 LPDDTF------RDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CCTTTT------TTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCHhHh------ccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCc
Confidence 776542 5689999999999 78999887 5889999999999995 6888755445 7899999999984211
Q ss_pred HhhccCCCccccccCCccEEEeCCeEeecc
Q 035579 757 EKCRKDGGQYWDLLTHIPFVRIDDKWVFGE 786 (814)
Q Consensus 757 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 786 (814)
.....+.....+..+++.++.+...
T Consensus 216 -----~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 216 -----LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp -----CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred -----CCHHHcccCcccCEEeccCCCccCC
Confidence 1112245677888899998876644
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=168.76 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=124.4
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecccccccccc-ccccCCCCcceEE
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELT 620 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~ 620 (814)
++++|++++|.+.+..+..+..+++|++|++++|..++.++. .+..+++|++|++++|+.++.+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 444444444444444444444455555555555432444433 34444555555555422333333 2344555555555
Q ss_pred ecC-ccCccccCCCCCcee---EEEecCC-cchhhhhhhcccccCCCCccc-EEEEecCCCCCccCCccccccCCCCCCC
Q 035579 621 IGG-ALPSLEEDGLPTNLH---SLDIRGN-MEIWKSMIERGRGFHRFSSLR-HLTIDGCDDDMVSFPPEDKRLGTALPLP 694 (814)
Q Consensus 621 l~~-~~~~l~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~l~~i~~~~~~~~~~~~~~ 694 (814)
+++ .+..++....+++|+ +|++++| ....... ..|..+++|+ +|++++| .+..+|...+ ..
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~----~~~~~l~~L~~~L~l~~n--~l~~i~~~~~-------~~ 178 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV----NAFQGLCNETLTLKLYNN--GFTSVQGYAF-------NG 178 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT----TTTTTTBSSEEEEECCSC--CCCEECTTTT-------TT
T ss_pred CCCCCCccccccccccccccccEEECCCCcchhhcCc----ccccchhcceeEEEcCCC--CCcccCHhhc-------CC
Confidence 555 444444333445555 8888888 5544332 5688999999 9999997 7778888763 23
Q ss_pred CCcceEEeccCCCCccccc-ccccC-CCCCeEEecCCCCCCccCCCCCcCCccEEeecCCchh
Q 035579 695 ASLTDLEIGRFPNLERLSS-SIVDL-QNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLI 755 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~l 755 (814)
++|++|+++++..++.+|. .+..+ ++|+.|++++ ++++.+|.. .+++|+.|++.+++.+
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 7899999999546999976 67888 9999999999 579999875 5789999999988643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=184.86 Aligned_cols=214 Identities=14% Similarity=0.149 Sum_probs=168.8
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
.+++|+.|++++|......|..+..+++|++|++++|.+.+..| +..+++|++|++++| .+..+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 34578889999888777777889999999999999999887665 888999999999998 5666653 3789999
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccC-CCCcccEEEEe
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFH-RFSSLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~l~~L~~L~l~ 671 (814)
++++|. +..++. ..+++|+.|++++ .+..++. ...+++|+.|++++|.+....+ ..+. .+++|+.|+++
T Consensus 105 ~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 105 HAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----AELAASSDTLEHLNLQ 177 (487)
T ss_dssp ECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG----GGGGGGTTTCCEEECT
T ss_pred ECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh----HHHhhhCCcccEEecC
Confidence 999984 444443 3468899999998 6666543 3447899999999998776544 3343 78999999999
Q ss_pred cCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCC-CcCCccEEeec
Q 035579 672 GCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKG-LPSSLLRLSIL 750 (814)
Q Consensus 672 ~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-l~~~L~~L~i~ 750 (814)
+| .+..+|... .+++|+.|++++ |.++.+|+.+..+++|+.|++++| .++.+|... .+++|+.|+++
T Consensus 178 ~N--~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 178 YN--FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp TS--CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred CC--ccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcC
Confidence 97 666665543 589999999999 788888888889999999999994 788888742 26899999999
Q ss_pred CCchh
Q 035579 751 SCPLI 755 (814)
Q Consensus 751 ~c~~l 755 (814)
+|+..
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 98644
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=180.25 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=53.1
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCc-cccccccC-------CCCCcceEeeecCC
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGL-VKLPQSSL-------SLCSLREIGIYKCS 400 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~ 400 (814)
...++|++|+++++. + .+|.... ..|+.|++++|.+. ..+|..+. .+++|++|++++|.
T Consensus 40 ~~~~~L~~l~l~~n~-l-~~p~~~~-----------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 106 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDT-E-ADLGQFT-----------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106 (312)
T ss_dssp EEEEECTTHHHHCCT-T-CCCHHHH-----------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred ccCCCceeEeecccc-c-ccHHHHH-----------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence 445556666666643 3 4433211 23555666665542 23443333 46666666666654
Q ss_pred CCcccCC-C--CCCCCCcEEEecccCCCCCCchhhhcCCC-----CCccEEEEecCC
Q 035579 401 SLVSFPE-V--ALPSKLEKIHIGACDALKSLPEAWMCDTN-----SSLEILYIEGCR 449 (814)
Q Consensus 401 ~l~~~~~-~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-----~~L~~L~l~~~~ 449 (814)
....+|. + ..+++|++|++++|. +...|..+ ..+ ++|++|++++|.
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWL--AELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHH--HHHHTTCCTTCCEEEEESCS
T ss_pred ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHH--HHHHHhhcCCCcEEEeeCCC
Confidence 3334443 2 446666666666665 43334333 222 566666666543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-18 Score=178.65 Aligned_cols=220 Identities=16% Similarity=0.120 Sum_probs=155.7
Q ss_pred ccEEEEeccCCc-chhhHhhc-------CCCCcceEeecccCCcccccccC--CCCCCccEEEecCCCCceecCCCCCCC
Q 035579 520 LESLSVYKCSKL-ESIAERLD-------NNTSLETIGINFCENLKILPSGL--HNLRQLREITIQRCGNLVSFPEGGLPC 589 (814)
Q Consensus 520 L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~l 589 (814)
++.|++++|... ..++..+. ++++|++|++++|.+.+.+|..+ ..+++|++|++++| .+..+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 666666665542 23444443 68888888888888888777765 78888888888887 445456555544
Q ss_pred -----CCcceEeeccccccccccccccCCCCcceEEecC-ccCc----cccC--CCCCceeEEEecCCcchhhhhhhccc
Q 035579 590 -----AKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPS----LEED--GLPTNLHSLDIRGNMEIWKSMIERGR 657 (814)
Q Consensus 590 -----~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~----l~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~ 657 (814)
++|++|++++|......|..++++++|++|++++ .+.. .+.. ..+++|++|++++|.+...... ...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV-CSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH-HHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH-HHH
Confidence 7888888888854444447788888888888888 4322 1122 5578899999999987632110 013
Q ss_pred ccCCCCcccEEEEecCCCCCccCC-ccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccC
Q 035579 658 GFHRFSSLRHLTIDGCDDDMVSFP-PEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFP 736 (814)
Q Consensus 658 ~l~~l~~L~~L~l~~~~~~l~~i~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 736 (814)
.+..+++|++|++++| .+...+ ... +..+++|++|++++ |.++.+|..+. ++|++|++++ ++++.+|
T Consensus 223 ~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p 290 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHN--SLRDAAGAPS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNP 290 (312)
T ss_dssp HHHTTCCCSEEECTTS--CCCSSCCCSC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCC
T ss_pred HHhcCCCCCEEECCCC--cCCcccchhh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCCh
Confidence 4567789999999987 555543 222 13578999999999 78888887665 8899999998 4788887
Q ss_pred CCCCcCCccEEeecCCc
Q 035579 737 EKGLPSSLLRLSILSCP 753 (814)
Q Consensus 737 ~~~l~~~L~~L~i~~c~ 753 (814)
.-.-+++|++|++++++
T Consensus 291 ~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 291 SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTTSCEEEEEECTTCT
T ss_pred hHhhCCCCCEEeccCCC
Confidence 63347889999998875
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=166.43 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=114.6
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEe
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 596 (814)
++++++|++++|......+..+.++++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 44677777777766555555677788888888888877776666777788888888887743333334567777888888
Q ss_pred eccccccccccccccCCCCcceEEecC-ccCcc--cc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCccc----EE
Q 035579 597 IFQCERLEALPKGLHNLTSLQELTIGG-ALPSL--EE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLR----HL 668 (814)
Q Consensus 597 l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l--~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~----~L 668 (814)
+++|......+..+..+++|++|++++ .+..+ +. ...+++|++|++++|.+..... ..+..+++|+ +|
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCEEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhccccceee
Confidence 877743333333566666666666666 44332 11 2334555555555555443322 2233333333 55
Q ss_pred EEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCC
Q 035579 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDC 729 (814)
Q Consensus 669 ~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c 729 (814)
++++| .+..++...+ ...+|++|++++ +.++.+|. .+..+++|++|+++++
T Consensus 183 ~ls~n--~l~~~~~~~~-------~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 183 DLSLN--PMNFIQPGAF-------KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECCSS--CCCEECTTSS-------CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ecCCC--cccccCcccc-------CCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence 55554 4444444331 223555555555 44555554 2345555555555553
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=164.70 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEe
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTI 621 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 621 (814)
++++.|++++|.+.+..+..+..+++|++|++++| .+..++.. ..+++|++|++++| .++.+|..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence 34555555555555544455555555555555554 33334332 34455555555555 34444444444444444444
Q ss_pred cC
Q 035579 622 GG 623 (814)
Q Consensus 622 ~~ 623 (814)
++
T Consensus 108 ~~ 109 (290)
T 1p9a_G 108 SF 109 (290)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-17 Score=160.68 Aligned_cols=199 Identities=18% Similarity=0.161 Sum_probs=144.3
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccC-CcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcc
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCE-NLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLS 593 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~ 593 (814)
++++++.|++++|...+..+..+.++++|++|++++|. +....+..+..+++|++|++++|..++.++. .+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 44578888888876665555578888888888888886 5555555777888888888887335666664 566778888
Q ss_pred eEeeccccccccccccccCCCCcc---eEEecC--ccCcccc--CCCCCcee-EEEecCCcchhhhhhhcccccCCCCcc
Q 035579 594 ELRIFQCERLEALPKGLHNLTSLQ---ELTIGG--ALPSLEE--DGLPTNLH-SLDIRGNMEIWKSMIERGRGFHRFSSL 665 (814)
Q Consensus 594 ~L~l~~~~~l~~lp~~~~~l~~L~---~L~l~~--~~~~l~~--~~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~L 665 (814)
+|++++| .++.+|. +..+++|+ .|++++ .+..++. ...+++|+ +|++++|....... ..+.. ++|
T Consensus 109 ~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~----~~~~~-~~L 181 (239)
T 2xwt_C 109 FLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG----YAFNG-TKL 181 (239)
T ss_dssp EEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT----TTTTT-CEE
T ss_pred EEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH----hhcCC-CCC
Confidence 8888888 4556776 77777777 888877 4666654 34467888 88888887664332 34555 789
Q ss_pred cEEEEecCCCCCccCCccccccCCCCCCC-CCcceEEeccCCCCcccccccccCCCCCeEEecCCCC
Q 035579 666 RHLTIDGCDDDMVSFPPEDKRLGTALPLP-ASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPK 731 (814)
Q Consensus 666 ~~L~l~~~~~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 731 (814)
++|++++| ..+..+|...+ ..+ ++|+.|++++ +.++.+|.. .+++|+.|+++++..
T Consensus 182 ~~L~L~~n-~~l~~i~~~~~------~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 182 DAVYLNKN-KYLTVIDKDAF------GGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp EEEECTTC-TTCCEECTTTT------TTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CEEEcCCC-CCcccCCHHHh------hccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 99999886 12777776543 456 8999999999 788888864 688999999988754
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=160.98 Aligned_cols=198 Identities=19% Similarity=0.214 Sum_probs=164.0
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQ 617 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 617 (814)
+.++++++.++++++.+.. +|..+. +++++|++++|......+..+..+++|++|++++| .++.++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 5677889999999877764 454443 68999999999554444567888999999999999 56666654 7899999
Q ss_pred eEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCC
Q 035579 618 ELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPA 695 (814)
Q Consensus 618 ~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~ 695 (814)
.|++++ .+..++. ...+++|++|++++|.+....+ ..|..+++|++|++++| .+..+|...+ ..++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~~------~~l~ 148 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGN--ELKTLPPGLL------TPTP 148 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTS--CCCCCCTTTT------TTCT
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCC--CCCccChhhc------cccc
Confidence 999999 7777776 4567999999999998876544 67899999999999998 7888887653 5689
Q ss_pred CcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCch
Q 035579 696 SLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCPL 754 (814)
Q Consensus 696 ~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~~ 754 (814)
+|+.|++++ |.++.+|. .+..+++|++|++++ ++++.+|...+ .++|+.++++++|.
T Consensus 149 ~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 149 KLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 999999999 78999998 457899999999999 58999998655 67999999998763
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=163.06 Aligned_cols=206 Identities=19% Similarity=0.253 Sum_probs=164.3
Q ss_pred chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccccc
Q 035579 532 ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGL 610 (814)
Q Consensus 532 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~~ 610 (814)
..+|..+. ++|++|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|++++|......+..+
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 34554332 57999999999999887778999999999999998 5555554 68889999999999995544455788
Q ss_pred cCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcccccc
Q 035579 611 HNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRL 687 (814)
Q Consensus 611 ~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~ 687 (814)
.++++|++|++++ .+..++. ...+++|++|++++|....... +..+..+++|++|++++| .+..++....
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l---~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~-- 169 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL---PEYFSNLTNLEHLDLSSN--KIQSIYCTDL-- 169 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC---CGGGGGCTTCCEEECCSS--CCCEECGGGG--
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC---chhhccCCCCCEEECCCC--CCCcCCHHHh--
Confidence 9999999999998 6666654 5567999999999998765321 156889999999999997 7777765432
Q ss_pred CCCCCCCCCcc----eEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 688 GTALPLPASLT----DLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 688 ~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
..+++|+ +|++++ +.++.++.......+|+.|++++| +++.+|...+ +++|++|+++++|
T Consensus 170 ----~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 ----RVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp ----HHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ----hhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence 2345555 899999 789999886666679999999995 6999988654 7899999999654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.6e-16 Score=156.77 Aligned_cols=194 Identities=22% Similarity=0.290 Sum_probs=95.8
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 598 (814)
.+.++++++. ++.+|..+. ++++.|++++|.+....+..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 18 ~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 4445554432 223443222 45666666666665555555666666666666665 34445443 3456666666666
Q ss_pred ccccccccc-ccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 599 QCERLEALP-KGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 599 ~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
+|. ++.+| ..+..+++|++|++++ |....... ..+..+++|++|++++| .+
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~~----~~~~~l~~L~~L~Ls~n--~l 145 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDR---------------------NQLKSLPP----RVFDSLTKLTYLSLGYN--EL 145 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCS---------------------SCCCCCCT----TTTTTCTTCCEEECCSS--CC
T ss_pred CCc-CCcCCHhHcccccCCCEEECCC---------------------CccCeeCH----HHhCcCcCCCEEECCCC--cC
Confidence 663 33333 2334444444444444 33222211 23444555555555554 44
Q ss_pred ccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
..+|...+ ..+++|++|++++ +.++.++. .+..+++|++|++++| +++.+|...+ +++|+.|++++||
T Consensus 146 ~~~~~~~~------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 146 QSLPKGVF------DKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCTTTT------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHc------cCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 44444321 2345555555555 44555544 3445555555555553 4555554333 4555555555544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=159.96 Aligned_cols=241 Identities=18% Similarity=0.109 Sum_probs=142.3
Q ss_pred ceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccc
Q 035579 392 REIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGC 471 (814)
Q Consensus 392 ~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 471 (814)
++++.++ +.++.+|. ..++++++|++++|+ ++.+|...| .++++|++|++++|...+.++...+.
T Consensus 12 ~~v~C~~-~~Lt~iP~-~l~~~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f~----------- 76 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPS-DLPRNAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFS----------- 76 (350)
T ss_dssp TEEEEES-TTCCSCCT-TCCTTCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSBC-----------
T ss_pred CEEEecC-CCCCccCc-CcCCCCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHhh-----------
Confidence 3455555 35566663 124677777777776 666666543 67777888888776533332211110
Q ss_pred cCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE-EEEeccCCcchhhHhhcCCCCcceEeec
Q 035579 472 YNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES-LSVYKCSKLESIAERLDNNTSLETIGIN 550 (814)
Q Consensus 472 ~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 550 (814)
..+++.+ +.+..|......+..|..+++|++|+++
T Consensus 77 --------------------------------------------~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 77 --------------------------------------------NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112 (350)
T ss_dssp --------------------------------------------SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred --------------------------------------------cchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence 0012222 2222333333334556777777777777
Q ss_pred ccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCC-CCcceEeeccccccccccccccCCCCcceEEecCccCcc
Q 035579 551 FCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPC-AKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSL 628 (814)
Q Consensus 551 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l-~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l 628 (814)
+|.+....+..+....++..+++.++..+..++.. +..+ ..++.|++++| .++.+|......
T Consensus 113 ~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~--------------- 176 (350)
T 4ay9_X 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNG--------------- 176 (350)
T ss_dssp EECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTT---------------
T ss_pred ccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccc---------------
Confidence 77776655555556666777777666566666652 3333 35666777666 455555433332
Q ss_pred ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCC
Q 035579 629 EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNL 708 (814)
Q Consensus 629 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l 708 (814)
.+|++|++.+++.....+. ..|..+++|++|++++| .+..+|... +.+|+.|.+.+++.+
T Consensus 177 ------~~L~~l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~N--~l~~lp~~~---------~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 177 ------TQLDELNLSDNNNLEELPN---DVFHGASGPVILDISRT--RIHSLPSYG---------LENLKKLRARSTYNL 236 (350)
T ss_dssp ------EEEEEEECTTCTTCCCCCT---TTTTTEECCSEEECTTS--CCCCCCSSS---------CTTCCEEECTTCTTC
T ss_pred ------cchhHHhhccCCcccCCCH---HHhccCcccchhhcCCC--CcCccChhh---------hccchHhhhccCCCc
Confidence 3455555554433333221 45677788888888876 777777754 577778887777788
Q ss_pred cccccccccCCCCCeEEecC
Q 035579 709 ERLSSSIVDLQNLTELCLRD 728 (814)
Q Consensus 709 ~~l~~~~~~l~~L~~L~l~~ 728 (814)
+.+| .+..+++|+.+++.+
T Consensus 237 ~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 237 KKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-CTTTCCSCCEEECSC
T ss_pred CcCC-CchhCcChhhCcCCC
Confidence 8887 467778888888754
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=154.14 Aligned_cols=195 Identities=23% Similarity=0.274 Sum_probs=131.2
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeecccccccccc-ccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEec
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIR 643 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~ 643 (814)
.+.++++++ .++.+|..+. +++++|++++|. ++.++ ..+.++++|++|++++ .+..++. ...+++|++|+++
T Consensus 18 ~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCC-CCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 444555443 3444444332 245555555552 23332 2445555555555555 4444443 2335677777777
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCC
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLT 722 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~ 722 (814)
+|.+..... ..+..+++|++|++++| .+..++...+ ..+++|++|++++ +.++.+|. .+..+++|+
T Consensus 94 ~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 94 DNKLQALPI----GVFDQLVNLAELRLDRN--QLKSLPPRVF------DSLTKLTYLSLGY-NELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SSCCCCCCT----TTTTTCSSCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCcCCcCCH----hHcccccCCCEEECCCC--ccCeeCHHHh------CcCcCCCEEECCC-CcCCccCHhHccCCcccc
Confidence 777655433 56788999999999997 7777776542 5789999999999 78999987 478999999
Q ss_pred eEEecCCCCCCccCCCCC--cCCccEEeecCCchhhHhhccCCCccccccCCccEEEeCCeEeec
Q 035579 723 ELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPLIEEKCRKDGGQYWDLLTHIPFVRIDDKWVFG 785 (814)
Q Consensus 723 ~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 785 (814)
+|++++| .++.++...+ +++|++|++++|. ++. .....+..+..+..+.+.++....
T Consensus 161 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 161 ELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKR----VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCc----CCHHHhccccCCCEEEecCCCeeC
Confidence 9999995 7999987655 6899999999984 221 122335567788889998876543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=166.15 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=127.2
Q ss_pred CCCcceEeecccCCcccccccC--CCCCCccEEEecCCCCceecC----CCCCCCCCcceEeeccccccccccccccCCC
Q 035579 541 NTSLETIGINFCENLKILPSGL--HNLRQLREITIQRCGNLVSFP----EGGLPCAKLSELRIFQCERLEALPKGLHNLT 614 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 614 (814)
+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|......|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456666666666666666655 666667777776664332222 1223456677777766644444445666667
Q ss_pred CcceEEecC-ccCc---ccc---CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccC-Cccccc
Q 035579 615 SLQELTIGG-ALPS---LEE---DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSF-PPEDKR 686 (814)
Q Consensus 615 ~L~~L~l~~-~~~~---l~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i-~~~~~~ 686 (814)
+|++|++++ .+.. ++. ...+++|++|++++|.+...... ....+..+++|++|++++| .+..+ |...+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~N--~l~~~~p~~~~~ 246 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSHN--SLRATVNPSAPR 246 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTTS--CCCCCCCSCCSS
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCCC--CCCccchhhHHh
Confidence 777777766 3322 111 23467788888888876432210 0012467788889999887 55554 555421
Q ss_pred cCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 687 LGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 687 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
...+++|++|++++ |.++.+|..+. ++|++|++++| +++.+|.-..+++|++|++++++
T Consensus 247 ----~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 247 ----CMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ----CCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred ----ccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 11247899999988 78888887664 78999999884 78887764447888999998875
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-16 Score=161.04 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=142.5
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEe
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 596 (814)
+++|+.|++++|.... ++ .+..+++|++|++++|.+....+ +..+++|++|++++| .+..++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 4578888888875443 44 57888889999998888776544 788888999999888 455565 577788888888
Q ss_pred eccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCC
Q 035579 597 IFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDD 675 (814)
Q Consensus 597 l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 675 (814)
+++| .++.++. +..+++|+.|++++ .+..++....+++|++|++++|...... .+..+++|+.|++++|
T Consensus 114 l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n-- 183 (308)
T 1h6u_A 114 LTST-QITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT------PLANLSKLTTLKADDN-- 183 (308)
T ss_dssp CTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSS--
T ss_pred CCCC-CCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCCh------hhcCCCCCCEEECCCC--
Confidence 8888 4555654 77888888888888 6666665556788888888888665432 2677888888888886
Q ss_pred CCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 676 DMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 676 ~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
.+..++. . ..+++|++|++++ +.++.++ .+..+++|+.|++++| .++..|.
T Consensus 184 ~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 184 KISDISP-L-------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp CCCCCGG-G-------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred ccCcChh-h-------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCC-eeecCCe
Confidence 5666654 2 3577888888888 6777777 4777888888888874 4665554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-16 Score=159.50 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=92.9
Q ss_pred CCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEe
Q 035579 494 SILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITI 573 (814)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 573 (814)
++|++|+++++.. .. ++....+++|+.|++++|.... ++. +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i-~~-l~~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGV-TT-IEGVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCC-CC-CTTGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCc-cC-chhhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 3455555555432 22 2223334455555555553332 222 55555555555555554432 23555555555555
Q ss_pred cCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhh
Q 035579 574 QRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 574 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
++| .+..++. +..+++|++|++++| .++.++. +..+++|+.|++++ .+..++....+++|++|++++|......
T Consensus 115 ~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~- 189 (308)
T 1h6u_A 115 TST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS- 189 (308)
T ss_dssp TTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-
T ss_pred CCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh-
Confidence 555 3333432 445555555555555 3333332 45555555555555 4444444444555555555555543321
Q ss_pred hhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccc
Q 035579 653 IERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLS 712 (814)
Q Consensus 653 ~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 712 (814)
.+..+++|++|++++| .+..++. . ..+++|+.|++++ +.++..|
T Consensus 190 -----~l~~l~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~~L~l~~-N~i~~~~ 233 (308)
T 1h6u_A 190 -----PLASLPNLIEVHLKNN--QISDVSP-L-------ANTSNLFIVTLTN-QTITNQP 233 (308)
T ss_dssp -----GGGGCTTCCEEECTTS--CCCBCGG-G-------TTCTTCCEEEEEE-EEEECCC
T ss_pred -----hhcCCCCCCEEEccCC--ccCcccc-c-------cCCCCCCEEEccC-CeeecCC
Confidence 1445555555555554 3444432 1 2455555555555 3444444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-16 Score=160.85 Aligned_cols=222 Identities=15% Similarity=0.111 Sum_probs=168.5
Q ss_pred CCccEEeecCCCCcccccc---cCCCcccccEEEEeccCCcchhhHhh--cCCCCcceEeecccCCccccc----ccCCC
Q 035579 494 SILEHLSIVGCPSLTCIFS---KNELPATLESLSVYKCSKLESIAERL--DNNTSLETIGINFCENLKILP----SGLHN 564 (814)
Q Consensus 494 ~~L~~L~l~~~~~l~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~ 564 (814)
..++.+.+.++......+. .....++|++|++++|...+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3578888887654321111 11123469999999998888888877 899999999999999987544 34557
Q ss_pred CCCccEEEecCCCCceecCCCCCCCCCcceEeecccccccc--cc--ccccCCCCcceEEecC-ccCcccc-----CCCC
Q 035579 565 LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEA--LP--KGLHNLTSLQELTIGG-ALPSLEE-----DGLP 634 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~--lp--~~~~~l~~L~~L~l~~-~~~~l~~-----~~~~ 634 (814)
+++|++|++++|......+..+..+++|++|++++|+..+. ++ ..+..+++|++|++++ .+..++. ...+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 99999999999955444446788899999999999964432 32 2347899999999999 7765543 2346
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCC---CcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRF---SSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL 711 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 711 (814)
++|++|++++|.+....+ ..+..+ ++|++|++++| .+..+|... +++|++|++++ |.++.+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~~L~~L~Ls~N--~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~ 287 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVN----PSAPRCMWSSALNSLNLSFA--GLEQVPKGL---------PAKLRVLDLSS-NRLNRA 287 (310)
T ss_dssp CCCSSEECTTSCCCCCCC----SCCSSCCCCTTCCCEECCSS--CCCSCCSCC---------CSCCSCEECCS-CCCCSC
T ss_pred CCCCEEECCCCCCCccch----hhHHhccCcCcCCEEECCCC--CCCchhhhh---------cCCCCEEECCC-CcCCCC
Confidence 899999999998776533 334444 79999999998 777888865 48999999999 789988
Q ss_pred ccccccCCCCCeEEecCCCCCC
Q 035579 712 SSSIVDLQNLTELCLRDCPKLK 733 (814)
Q Consensus 712 ~~~~~~l~~L~~L~l~~c~~l~ 733 (814)
|. +..+++|+.|+++++ .++
T Consensus 288 ~~-~~~l~~L~~L~L~~N-~l~ 307 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGN-PFL 307 (310)
T ss_dssp CC-TTSCCCCSCEECSST-TTS
T ss_pred ch-hhhCCCccEEECcCC-CCC
Confidence 74 678899999999995 454
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=157.55 Aligned_cols=219 Identities=21% Similarity=0.190 Sum_probs=169.0
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCccccc-ccCCCCCCccEEEecCCCCceecC-CCCCCCCCcce
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILP-SGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSE 594 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~ 594 (814)
++++++|++++|.....-+..|.++++|++|+|++|.+.+.+| ..|.++++++++...++..+..++ ..+..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 4578889998876554444578999999999999999877665 467889888876655544677775 46788999999
Q ss_pred Eeecccccccccc-ccccCCCCcceEEecC--ccCccccC---CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEE
Q 035579 595 LRIFQCERLEALP-KGLHNLTSLQELTIGG--ALPSLEED---GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHL 668 (814)
Q Consensus 595 L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~--~~~~l~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L 668 (814)
|++++| .++.+| ..+....++..+++.+ .+..++.. .....++.|++++|.+..... ......+|++|
T Consensus 109 L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-----~~f~~~~L~~l 182 (350)
T 4ay9_X 109 LLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAFNGTQLDEL 182 (350)
T ss_dssp EEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TSSTTEEEEEE
T ss_pred cccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-----hhccccchhHH
Confidence 999998 455554 3555667788888876 66666543 234579999999998765432 33456789999
Q ss_pred EEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEe
Q 035579 669 TIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLS 748 (814)
Q Consensus 669 ~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~ 748 (814)
++.++ ..++.+|.+.+ ..+++|++|++++ |+++.+|. ..+.+|++|.+.+|+.++.+|.-.-+++|+.++
T Consensus 183 ~l~~~-n~l~~i~~~~f------~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~ 252 (350)
T 4ay9_X 183 NLSDN-NNLEELPNDVF------HGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEAS 252 (350)
T ss_dssp ECTTC-TTCCCCCTTTT------TTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEE
T ss_pred hhccC-CcccCCCHHHh------ccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCc
Confidence 99873 38999998764 5789999999999 79999996 347889999999999999999855588999999
Q ss_pred ecC
Q 035579 749 ILS 751 (814)
Q Consensus 749 i~~ 751 (814)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 875
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=158.12 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=41.2
Q ss_pred hhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccccccCCCC
Q 035579 537 RLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPKGLHNLTS 615 (814)
Q Consensus 537 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 615 (814)
.+..+++|++|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|++++|......|..+..+++
T Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 3445555555555555555444444555555555555555 2333333 2344555555555555322222223444444
Q ss_pred cceEEecC
Q 035579 616 LQELTIGG 623 (814)
Q Consensus 616 L~~L~l~~ 623 (814)
|+.|++++
T Consensus 207 L~~L~l~~ 214 (272)
T 3rfs_A 207 LQYIWLHD 214 (272)
T ss_dssp CCEEECCS
T ss_pred CCEEEccC
Confidence 44444443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=149.30 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=69.2
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
++|+.|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+.. +.+++|+.+++
T Consensus 157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~ 229 (272)
T 3rfs_A 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSE 229 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHH
T ss_pred ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHH
Confidence 46777777777666555556788888999999988888877777888889999999888533 33557888888
Q ss_pred ccccccccccccccCCCCc
Q 035579 598 FQCERLEALPKGLHNLTSL 616 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~l~~L 616 (814)
..|...+.+|.+++.++..
T Consensus 230 ~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 230 WINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHHHTGGGBBCTTSCBCGG
T ss_pred HHHhCCCcccCcccccCCC
Confidence 8887777888777665543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-16 Score=164.83 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=91.9
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCcee-cCCCCCCCCCcceEeeccccccccccccccCCCCcceEE
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVS-FPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELT 620 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 620 (814)
++++.+++++|.+.+..+. +..+++|++|++++|..... ++..+..+++|++|++++|......+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4555555555555444333 33455555555555532111 333344455555555555533333444455555555555
Q ss_pred ecC--ccCc--ccc-CCCCCceeEEEecCC-cchhhhhhhcccccCCCC-cccEEEEecCCCCC--ccCCccccccCCCC
Q 035579 621 IGG--ALPS--LEE-DGLPTNLHSLDIRGN-MEIWKSMIERGRGFHRFS-SLRHLTIDGCDDDM--VSFPPEDKRLGTAL 691 (814)
Q Consensus 621 l~~--~~~~--l~~-~~~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~l--~~i~~~~~~~~~~~ 691 (814)
+++ .+.. ++. ...+++|++|++++| ........ ..+..++ +|++|++++|...+ ..++...
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~------- 218 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ---VAVAHVSETITQLNLSGYRKNLQKSDLSTLV------- 218 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH---HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH---HHHHhcccCCCEEEeCCCcccCCHHHHHHHH-------
Confidence 555 1221 221 223455666666665 33322111 2344555 66666665541011 2233322
Q ss_pred CCCCCcceEEeccCCCCc-ccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCC
Q 035579 692 PLPASLTDLEIGRFPNLE-RLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSC 752 (814)
Q Consensus 692 ~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c 752 (814)
..+++|++|++++|..++ ..+..+..+++|++|++++|..+..-....+ +++|++|++++|
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 234566666666644333 3333555556666666666542221110011 455666666665
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-14 Score=141.81 Aligned_cols=173 Identities=17% Similarity=0.199 Sum_probs=95.6
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEec
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIG 622 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~ 622 (814)
+.+.++++++.+. .+|..+. +++++|++++|......+..+..+++|++|++++|......+..+..+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------- 82 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--------- 82 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC---------
Confidence 3445555554443 2233222 355555555553222222234455555555555553222222233444
Q ss_pred CccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEe
Q 035579 623 GALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEI 702 (814)
Q Consensus 623 ~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l 702 (814)
++|++|++++|.+..... ..+..+++|++|++++| .+..+|...+ ..+++|++|++
T Consensus 83 ------------~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N--~l~~~~~~~~------~~l~~L~~L~L 138 (251)
T 3m19_A 83 ------------TELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGN--QLKSLPSGVF------DRLTKLKELRL 138 (251)
T ss_dssp ------------TTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEEC
T ss_pred ------------CcCCEEECCCCcccccCh----hHhcccCCCCEEEcCCC--cCCCcChhHh------ccCCcccEEEC
Confidence 555555555555443322 44566677777777775 5566665432 34677777777
Q ss_pred ccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 703 GRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 703 ~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
++ +.++.+|. .+..+++|++|++++ ++++.++...+ +++|++|++++|+
T Consensus 139 s~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 139 NT-NQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cC-CcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 77 56777666 566777777777777 36666665444 5677777777765
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-14 Score=140.82 Aligned_cols=170 Identities=19% Similarity=0.266 Sum_probs=99.5
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~ 598 (814)
.++++++++ .+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|. +..++ ..+..+++|++|+++
T Consensus 16 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECC
Confidence 445555543 3334443333 467777777777777666667777777777777763 33333 346667777777777
Q ss_pred ccccccccc-ccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 599 QCERLEALP-KGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 599 ~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
+|. ++.+| ..+..+++|++|++++ .+..++. ..+..+++|++|++++| .
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------------------~~~~~l~~L~~L~Ls~N--~ 142 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPS--------------------------GVFDRLTKLKELRLNTN--Q 142 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------------TTTTTCTTCCEEECCSS--C
T ss_pred CCc-ccccChhHhcccCCCCEEEcCCCcCCCcCh--------------------------hHhccCCcccEEECcCC--c
Confidence 773 33333 3444554554444444 3332221 23455666666666665 5
Q ss_pred CccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCC
Q 035579 677 MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDC 729 (814)
Q Consensus 677 l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c 729 (814)
+..+|...+ ..+++|++|++++ |.++.++. .+..+++|+.|+++++
T Consensus 143 l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 143 LQSIPAGAF------DKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCCCCTTTT------TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHHHc------CcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 555555321 3456677777776 56666665 5666777777777774
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-15 Score=159.60 Aligned_cols=107 Identities=13% Similarity=0.268 Sum_probs=73.7
Q ss_pred cccccEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCcee--cCCCCCCCCCcc
Q 035579 517 PATLESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVS--FPEGGLPCAKLS 593 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~ 593 (814)
.++|++|++++|..... ++..+..+++|++|++++|.+....+..+..+++|++|++++|..++. ++..+..+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 35677777777765544 777788888888888888877766777777788888888888754442 454456677888
Q ss_pred eEeecccccccc--ccccccCCC-CcceEEecC
Q 035579 594 ELRIFQCERLEA--LPKGLHNLT-SLQELTIGG 623 (814)
Q Consensus 594 ~L~l~~~~~l~~--lp~~~~~l~-~L~~L~l~~ 623 (814)
+|++++|..++. ++..+..++ +|++|++++
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 888888744443 455555555 555555554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=146.70 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=76.1
Q ss_pred CCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEE
Q 035579 562 LHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSL 640 (814)
Q Consensus 562 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L 640 (814)
+..+++|++|++++| .+..++. +..+++|++|++++| .++.+| .+..+++|++|++++ .+..++....+++|++|
T Consensus 64 ~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEE
Confidence 334444444444444 2233332 334444444444444 233332 244444444444444 33333333334555555
Q ss_pred EecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCC
Q 035579 641 DIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQN 720 (814)
Q Consensus 641 ~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 720 (814)
++++|..... ..+..+++|++|++++| .+..++. . ..+++|+.|++++ +.++.++ .+..+++
T Consensus 140 ~l~~n~l~~~------~~l~~l~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~~L~L~~-N~i~~l~-~l~~l~~ 201 (291)
T 1h6t_A 140 YLGNNKITDI------TVLSRLTKLDTLSLEDN--QISDIVP-L-------AGLTKLQNLYLSK-NHISDLR-ALAGLKN 201 (291)
T ss_dssp ECCSSCCCCC------GGGGGCTTCSEEECCSS--CCCCCGG-G-------TTCTTCCEEECCS-SCCCBCG-GGTTCTT
T ss_pred EccCCcCCcc------hhhccCCCCCEEEccCC--ccccchh-h-------cCCCccCEEECCC-CcCCCCh-hhccCCC
Confidence 5665554433 23556666666666665 4444443 2 3466677777776 5666665 3666777
Q ss_pred CCeEEecCCCCCCccC
Q 035579 721 LTELCLRDCPKLKYFP 736 (814)
Q Consensus 721 L~~L~l~~c~~l~~lp 736 (814)
|+.|++++| .+...|
T Consensus 202 L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 202 LDVLELFSQ-ECLNKP 216 (291)
T ss_dssp CSEEEEEEE-EEECCC
T ss_pred CCEEECcCC-cccCCc
Confidence 777777764 344433
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-15 Score=162.02 Aligned_cols=210 Identities=15% Similarity=0.080 Sum_probs=132.2
Q ss_pred cccccEEEEeccCC---cchhhH-------hhcCCCCcceEeecccCCcc----cccccCCCCCCccEEEecCCCCcee-
Q 035579 517 PATLESLSVYKCSK---LESIAE-------RLDNNTSLETIGINFCENLK----ILPSGLHNLRQLREITIQRCGNLVS- 581 (814)
Q Consensus 517 ~~~L~~L~l~~~~~---~~~~~~-------~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~- 581 (814)
.++|++|++++|.. ...+|. .+..+++|++|++++|.+.. .+|..+..+++|++|++++|..-..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 45677777766522 223333 34677888888888887776 4666677788888888888743211
Q ss_pred ---cCCCCCCC---------CCcceEeecccccc-cccc---ccccCCCCcceEEecC-ccC------ccc-cCCCCCce
Q 035579 582 ---FPEGGLPC---------AKLSELRIFQCERL-EALP---KGLHNLTSLQELTIGG-ALP------SLE-EDGLPTNL 637 (814)
Q Consensus 582 ---~~~~~~~l---------~~L~~L~l~~~~~l-~~lp---~~~~~l~~L~~L~l~~-~~~------~l~-~~~~~~~L 637 (814)
++..+..+ ++|++|++++|... ..+| ..+..+++|+.|++++ .+. ..+ ....+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 22122222 68888888887433 2344 3556777888888887 444 122 23446788
Q ss_pred eEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCcc-----CCccccccCCCCCCCCCcceEEeccCCCCcc--
Q 035579 638 HSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVS-----FPPEDKRLGTALPLPASLTDLEIGRFPNLER-- 710 (814)
Q Consensus 638 ~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 710 (814)
++|++++|.+........+..+..+++|++|++++| .+.. ++.... ...+++|++|++++ +.++.
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~-n~i~~~g 290 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSARGAAAVVDAFS-----KLENIGLQTLRLQY-NEIELDA 290 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCHHHHHHHHHHHH-----TCSSCCCCEEECCS-SCCBHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCchhhHHHHHHHHh-----hccCCCeEEEECcC-CcCCHHH
Confidence 888888888753222222256778888888988887 3332 233220 01268888999988 56766
Q ss_pred ---ccccc-ccCCCCCeEEecCCCCCCcc
Q 035579 711 ---LSSSI-VDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 711 ---l~~~~-~~l~~L~~L~l~~c~~l~~l 735 (814)
+|..+ .++++|++|++++| .++..
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N-~l~~~ 318 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGN-RFSEE 318 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTS-BSCTT
T ss_pred HHHHHHHHHhcCCCceEEEccCC-cCCcc
Confidence 77766 56889999999885 45443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-15 Score=161.75 Aligned_cols=227 Identities=15% Similarity=0.126 Sum_probs=133.8
Q ss_pred CCcccccEEEEeccCCcchhh----HhhcCCC-CcceEeecccCCcccccccCCCC-----CCccEEEecCCCCceecC-
Q 035579 515 ELPATLESLSVYKCSKLESIA----ERLDNNT-SLETIGINFCENLKILPSGLHNL-----RQLREITIQRCGNLVSFP- 583 (814)
Q Consensus 515 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~- 583 (814)
..+++|++|++++|......+ ..+..++ +|++|++++|.+....+..+..+ ++|++|++++|. ++..+
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 345568888888877555444 6677777 78888888887776655555443 788888888874 33322
Q ss_pred CC----CCCC-CCcceEeecccccccccc-cc----ccC-CCCcceEEecC-ccCc-----ccc-C-CCCCceeEEEecC
Q 035579 584 EG----GLPC-AKLSELRIFQCERLEALP-KG----LHN-LTSLQELTIGG-ALPS-----LEE-D-GLPTNLHSLDIRG 644 (814)
Q Consensus 584 ~~----~~~l-~~L~~L~l~~~~~l~~lp-~~----~~~-l~~L~~L~l~~-~~~~-----l~~-~-~~~~~L~~L~l~~ 644 (814)
.. +..+ ++|++|++++|. ++..+ .. +.. .++|++|++++ .+.. ++. . ...++|++|++++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 11 2333 678888888884 33332 22 333 25788888877 4432 111 1 1224788888888
Q ss_pred CcchhhhhhhcccccCCC-CcccEEEEecCCCCCcc-----CCccccccCCCCCCCCCcceEEeccCCCCccccc-----
Q 035579 645 NMEIWKSMIERGRGFHRF-SSLRHLTIDGCDDDMVS-----FPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS----- 713 (814)
Q Consensus 645 n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~l~~-----i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----- 713 (814)
|.+...........+..+ ++|++|++++| .+.. ++.... ...++|++|++++ |.++..+.
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l~~ 247 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENLKL 247 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHHHH
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHHHH
Confidence 876554432212234455 47888888876 4444 333221 1235788888887 56655432
Q ss_pred ccccCCCCCeEEecCCCCCCccCCC-------CC--cCCccEEeecCCc
Q 035579 714 SIVDLQNLTELCLRDCPKLKYFPEK-------GL--PSSLLRLSILSCP 753 (814)
Q Consensus 714 ~~~~l~~L~~L~l~~c~~l~~lp~~-------~l--~~~L~~L~i~~c~ 753 (814)
.+..+++|++|++++| .+..++.. .+ +++|++|++++++
T Consensus 248 ~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3456677888888775 33322221 11 4567777777765
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=141.64 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=142.4
Q ss_pred CCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEE
Q 035579 562 LHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSL 640 (814)
Q Consensus 562 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L 640 (814)
...+++|++|++++| .+..++ .+..+++|++|++++| .++.++. +..+++|+.|++++ .+..++....+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 346788999999998 566675 4778899999999999 5666665 89999999999999 88888777888999999
Q ss_pred EecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCC
Q 035579 641 DIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQN 720 (814)
Q Consensus 641 ~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 720 (814)
++++|.+... ..+..+++|+.|++++| .+..++. . ..+++|++|++++ +.++.++. +..+++
T Consensus 118 ~L~~n~i~~~------~~l~~l~~L~~L~l~~n--~l~~~~~-l-------~~l~~L~~L~L~~-N~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 118 SLEHNGISDI------NGLVHLPQLESLYLGNN--KITDITV-L-------SRLTKLDTLSLED-NQISDIVP-LAGLTK 179 (291)
T ss_dssp ECTTSCCCCC------GGGGGCTTCCEEECCSS--CCCCCGG-G-------GGCTTCSEEECCS-SCCCCCGG-GTTCTT
T ss_pred ECCCCcCCCC------hhhcCCCCCCEEEccCC--cCCcchh-h-------ccCCCCCEEEccC-Cccccchh-hcCCCc
Confidence 9999987664 35778999999999998 6666632 2 4689999999999 68888885 889999
Q ss_pred CCeEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 721 LTELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 721 L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
|+.|++++| .++.++.-.-+++|+.|++++|+
T Consensus 180 L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 LQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred cCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 999999995 78988764448899999999986
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-15 Score=156.56 Aligned_cols=120 Identities=14% Similarity=0.063 Sum_probs=74.6
Q ss_pred chhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccc-cccEEEeeccCCccccccccCCC-----CCcceEee
Q 035579 323 SHNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSC-RLEYLILSCCEGLVKLPQSSLSL-----CSLREIGI 396 (814)
Q Consensus 323 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~L 396 (814)
..+.++...++|++|++++| .+...+.......+..+ + +|++|++++|.+....+..+..+ ++|++|++
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANT----PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTC----CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhC----CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 34555555666888888886 47766654443444444 5 78888888887766555555543 78888888
Q ss_pred ecCCCCcccCC------CCCC-CCCcEEEecccCCCCCCchhhhc---CC-CCCccEEEEecCC
Q 035579 397 YKCSSLVSFPE------VALP-SKLEKIHIGACDALKSLPEAWMC---DT-NSSLEILYIEGCR 449 (814)
Q Consensus 397 ~~~~~l~~~~~------~~~~-~~L~~L~l~~~~~l~~~~~~~~~---~~-l~~L~~L~l~~~~ 449 (814)
++|. ++..+. +... ++|++|++++|. +...+...+. .. ..+|++|++++|.
T Consensus 88 s~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 88 SGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp CSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred cCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 8864 433321 2223 678888888887 4444432211 22 3577888887754
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-15 Score=161.76 Aligned_cols=226 Identities=13% Similarity=0.093 Sum_probs=162.7
Q ss_pred cccccEEEEeccCCcchh----hHhhcCCCCcceEeecccCC---cccccccC-------CCCCCccEEEecCCCCce--
Q 035579 517 PATLESLSVYKCSKLESI----AERLDNNTSLETIGINFCEN---LKILPSGL-------HNLRQLREITIQRCGNLV-- 580 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~---~~~~~~~~-------~~l~~L~~L~l~~~~~l~-- 580 (814)
.++|+.|++++|...... +..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|..-.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 356888999888766553 44577899999999999744 34455544 789999999999985433
Q ss_pred --ecCCCCCCCCCcceEeeccccccc----cccccccCC---------CCcceEEecC-ccC--cccc----CCCCCcee
Q 035579 581 --SFPEGGLPCAKLSELRIFQCERLE----ALPKGLHNL---------TSLQELTIGG-ALP--SLEE----DGLPTNLH 638 (814)
Q Consensus 581 --~~~~~~~~l~~L~~L~l~~~~~l~----~lp~~~~~l---------~~L~~L~l~~-~~~--~l~~----~~~~~~L~ 638 (814)
.+|..+..+++|++|++++|.... .++..+..+ ++|++|++++ .+. .++. ...+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 255566778999999999995432 233334444 8999999998 553 2321 23467999
Q ss_pred EEEecCCcchhhhhhh-cccccCCCCcccEEEEecCCCCC-----ccCCccccccCCCCCCCCCcceEEeccCCCCcc--
Q 035579 639 SLDIRGNMEIWKSMIE-RGRGFHRFSSLRHLTIDGCDDDM-----VSFPPEDKRLGTALPLPASLTDLEIGRFPNLER-- 710 (814)
Q Consensus 639 ~L~l~~n~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~l-----~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 710 (814)
+|++++|.+....... .+..+..+++|+.|++++| .+ ..+|... ..+++|++|++++ +.++.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l-------~~~~~L~~L~L~~-n~i~~~~ 260 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIAL-------KSWPNLRELGLND-CLLSARG 260 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHG-------GGCTTCCEEECTT-CCCCHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHH-------ccCCCcCEEECCC-CCCchhh
Confidence 9999999876432110 0136788999999999997 45 4556544 4679999999999 55664
Q ss_pred ---ccccc--ccCCCCCeEEecCCCCCCc-----cCCCC--CcCCccEEeecCCc
Q 035579 711 ---LSSSI--VDLQNLTELCLRDCPKLKY-----FPEKG--LPSSLLRLSILSCP 753 (814)
Q Consensus 711 ---l~~~~--~~l~~L~~L~l~~c~~l~~-----lp~~~--l~~~L~~L~i~~c~ 753 (814)
++..+ +.+++|++|++++| .++. +|... .+++|++|++++|+
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 35555 34899999999996 6776 66532 16899999999986
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=152.00 Aligned_cols=180 Identities=19% Similarity=0.232 Sum_probs=106.1
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+++.|++++|...+ +|..+ .++|+.|++++|.+. .+| ..+++|++|++++| .+..+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 56777777765433 55433 256777777777666 344 34567777777776 4445665 443 67777777
Q ss_pred cccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
+| .++.+|. .+++|+.|++++ .+..++. .+++|++|++++|.+... + . +. ++|+.|++++| .+
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~l-p----~-l~--~~L~~L~Ls~N--~L 192 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFL-P----E-LP--ESLEALDVSTN--LL 192 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCC-C----C-CC--TTCCEEECCSS--CC
T ss_pred CC-cCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCc-c----h-hh--CCCCEEECcCC--CC
Confidence 76 4444665 466777777776 5555554 456777777777765442 1 2 33 66777777765 55
Q ss_pred ccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCC
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDC 729 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 729 (814)
..+|. ... ......+.|+.|++++ |.++.+|..+..+++|+.|++++|
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSS
T ss_pred Cchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCC
Confidence 56665 310 0001112227777776 566677766666777777777764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=151.49 Aligned_cols=184 Identities=21% Similarity=0.247 Sum_probs=96.9
Q ss_pred CccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEec
Q 035579 495 ILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQ 574 (814)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 574 (814)
+++.|+++++. ++. ++.. .+++|+.|++++|... .+| ..+++|+.|++++|.+.+ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~-L~~-lp~~-l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLN-LSS-LPDN-LPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSC-CSC-CCSC-CCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCC-CCc-cCHh-HcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 46666666653 222 2221 1345666666665443 444 345666666666666555 444 433 66666666
Q ss_pred CCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhh
Q 035579 575 RCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMI 653 (814)
Q Consensus 575 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~ 653 (814)
+| .+..+|. .+++|+.|++++| .++.+|. .+++|+.|++++ .+..+|. +.++|+.|++++|.+...+
T Consensus 129 ~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~~~L~~L~Ls~N~L~~lp-- 196 (571)
T 3cvr_A 129 NN-QLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQLTFLPE--LPESLEALDVSTNLLESLP-- 196 (571)
T ss_dssp SS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCC--
T ss_pred CC-cCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCCCCCcch--hhCCCCEEECcCCCCCchh--
Confidence 65 3444554 3456666666666 3444554 455666666666 5555544 2266666666666554221
Q ss_pred hcccccCCCCcc-------cEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccc
Q 035579 654 ERGRGFHRFSSL-------RHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIV 716 (814)
Q Consensus 654 ~~~~~l~~l~~L-------~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 716 (814)
. +.. +| +.|++++| .+..+|...+ .+++|+.|++++|+--..+|..+.
T Consensus 197 ---~-~~~--~L~~~~~~L~~L~Ls~N--~l~~lp~~l~-------~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 197 ---A-VPV--RNHHSEETEIFFRCREN--RITHIPENIL-------SLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp ---C-CC----------CCEEEECCSS--CCCCCCGGGG-------GSCTTEEEECCSSSCCHHHHHHHH
T ss_pred ---h-HHH--hhhcccccceEEecCCC--cceecCHHHh-------cCCCCCEEEeeCCcCCCcCHHHHH
Confidence 1 221 44 66666665 5556666552 356666666666322233444443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=154.50 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=77.0
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
++|+.|++++|... .++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++| .+..+| .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 45666666665433 233 36666666677776666655443 566666666666666 444444 4555666666666
Q ss_pred ccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 598 FQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
++| .+..++ .+..+++|+.|++++ .+..++....+++|+.|+|++|.+.... .+..+++|+.|+|++|
T Consensus 117 s~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~------~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 117 EHN-GISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV------PLAGLTKLQNLYLSKN 185 (605)
T ss_dssp TTS-CCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG------GGTTCTTCCEEECCSS
T ss_pred cCC-CCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCch------hhccCCCCCEEECcCC
Confidence 666 333443 355555566665555 4444433444455555555555443321 1344455555555554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=154.78 Aligned_cols=191 Identities=17% Similarity=0.187 Sum_probs=151.5
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecc
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 599 (814)
+..+.+..+......+ +..+++|+.|++++|.+... ..+..+++|+.|+|++| .+..++. +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcC
Confidence 4444444443333333 56788999999999987654 35888999999999998 5566665 78899999999999
Q ss_pred ccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCc
Q 035579 600 CERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMV 678 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~ 678 (814)
| .+..+| .+..+++|+.|++++ .+..++....+++|+.|+|++|.+... ..+..+++|+.|+|++| .+.
T Consensus 97 N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N--~l~ 166 (605)
T 1m9s_A 97 N-KIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN--QIS 166 (605)
T ss_dssp S-CCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSS--CCC
T ss_pred C-CCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCC--cCC
Confidence 9 566665 688999999999999 777777777789999999999987664 35788999999999997 666
Q ss_pred cCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCC
Q 035579 679 SFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 679 ~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
.++. . ..+++|+.|+|++ +.++.++ .+..+++|+.|++++| .+...|.
T Consensus 167 ~~~~-l-------~~l~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 167 DIVP-L-------AGLTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CCGG-G-------TTCTTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred Cchh-h-------ccCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 6655 3 4689999999999 6888886 6889999999999996 4655554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-13 Score=138.16 Aligned_cols=150 Identities=19% Similarity=0.206 Sum_probs=77.0
Q ss_pred CCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEE
Q 035579 563 HNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLD 641 (814)
Q Consensus 563 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~ 641 (814)
..+++|++|++++| .+..++ .+..+++|++|++++| .+..++. +..+++|+.|++++ .+..++.... ++|++|+
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 34444445555444 333343 3444445555555544 3333333 44455555555554 4444433333 5666666
Q ss_pred ecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCC
Q 035579 642 IRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNL 721 (814)
Q Consensus 642 l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L 721 (814)
+++|.+... ..+..+++|+.|++++| .+..++. . ..+++|+.|++++ |.++.+ ..+..+++|
T Consensus 113 L~~N~l~~~------~~l~~l~~L~~L~Ls~N--~i~~~~~-l-------~~l~~L~~L~L~~-N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 113 LDNNELRDT------DSLIHLKNLEILSIRNN--KLKSIVM-L-------GFLSKLEVLDLHG-NEITNT-GGLTRLKKV 174 (263)
T ss_dssp CCSSCCSBS------GGGTTCTTCCEEECTTS--CCCBCGG-G-------GGCTTCCEEECTT-SCCCBC-TTSTTCCCC
T ss_pred ccCCccCCC------hhhcCcccccEEECCCC--cCCCChH-H-------ccCCCCCEEECCC-CcCcch-HHhccCCCC
Confidence 666655442 23556666666666665 4554442 1 2456666666666 556555 355666666
Q ss_pred CeEEecCCCCCCccC
Q 035579 722 TELCLRDCPKLKYFP 736 (814)
Q Consensus 722 ~~L~l~~c~~l~~lp 736 (814)
+.|+++++ .+...|
T Consensus 175 ~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 175 NWIDLTGQ-KCVNEP 188 (263)
T ss_dssp CEEEEEEE-EEECCC
T ss_pred CEEeCCCC-cccCCc
Confidence 66666663 344333
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=126.12 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=70.9
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
++|+.|++++|... .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|......+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 35666777665443 444 46667777777777774332 235666777777777776443335556666777777777
Q ss_pred ccccccccccccccCCCCcceEEecC-c-cCccccCCCCCceeEEEecCCc
Q 035579 598 FQCERLEALPKGLHNLTSLQELTIGG-A-LPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 598 ~~~~~l~~lp~~~~~l~~L~~L~l~~-~-~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
++|......|..+..+++|++|++++ . +..++....+++|++|++++|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 77744444555555655555555555 2 4443333333444444444443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=126.39 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=98.0
Q ss_pred CccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEec
Q 035579 495 ILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQ 574 (814)
Q Consensus 495 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 574 (814)
+|++|+++++... . ++....+++|++|++++|. ...++ .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~-l~~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-D-LTGIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-C-CTTGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-C-hHHHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3455555443222 2 2223344567777777773 33333 57778888888888888877677778888888888888
Q ss_pred CCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcc
Q 035579 575 RCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 575 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
+|......+..+..+++|++|++++|..++.+| .+..+++|+.|++++ .+..++....+++|+.|++++|++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence 875444455566777888888888886577776 577888888888887 666655444456677777777653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-12 Score=123.60 Aligned_cols=147 Identities=22% Similarity=0.269 Sum_probs=89.1
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
-+.++.+++ .++.+|..+. ++|++|++++|......|..+..+++|++|++++ .+..++.
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~---------------- 81 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV---------------- 81 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh----------------
Confidence 455666654 5666665444 4777777777744443355555555555555544 3333321
Q ss_pred chhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEe
Q 035579 647 EIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCL 726 (814)
Q Consensus 647 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 726 (814)
..|..+++|+.|++++| .+..++...+ ..+++|++|++++ |.++.+|..+..+++|++|++
T Consensus 82 ----------~~~~~l~~L~~L~Ls~N--~l~~l~~~~~------~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 82 ----------GVFDSLTQLTVLDLGTN--QLTVLPSAVF------DRLVHLKELFMCC-NKLTELPRGIERLTHLTHLAL 142 (229)
T ss_dssp ----------TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEEC
T ss_pred ----------hhcccCCCcCEEECCCC--cCCccChhHh------CcchhhCeEeccC-CcccccCcccccCCCCCEEEC
Confidence 33455666666666665 5555555432 3566777777777 567777776777777777777
Q ss_pred cCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 727 RDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 727 ~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
++ ++++.++...+ +++|+.|++.++|
T Consensus 143 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 143 DQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 77 46777765444 5677777777765
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-12 Score=123.85 Aligned_cols=125 Identities=21% Similarity=0.212 Sum_probs=56.6
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-cccCCCCcceEE
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK-GLHNLTSLQELT 620 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~ 620 (814)
+|++|++++|.+.+..+..+..+++|++|++++| .++.++. .+..+++|++|++++| .++.+|. .+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEE
Confidence 4455555555444443344445555555555554 3333333 2344455555555555 2223322 234444444444
Q ss_pred ecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 621 IGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 621 l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++ .+..++. ...+++|++|++++|.+..... ..+..+++|++|++++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecCC
Confidence 444 3333322 1223455555555554433221 33555566666666654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-12 Score=131.97 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=52.2
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcc-eEEeccCCCCcccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLT-DLEIGRFPNLERLS 712 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~ 712 (814)
+++|+++++++|....... .+|.++++|+++++.++ +..|+...+ ..+++|+ .+++.+ .++.|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n---i~~I~~~aF------~~~~~L~~~l~l~~--~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN---LKTIGQRVF------SNCGRLAGTLELPA--SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT---CCEECTTTT------TTCTTCCEEEEECT--TCCEEC
T ss_pred cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc---cceehHHHh------hCChhccEEEEEcc--cceEEc
Confidence 3556666666554443322 45555666666666552 455555442 4455565 666655 455555
Q ss_pred c-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEe
Q 035579 713 S-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLS 748 (814)
Q Consensus 713 ~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~ 748 (814)
. .+.++++|+.+++++ ++++.++...+ +++|++++
T Consensus 290 ~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 4 555566666666554 35555555444 44444443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=131.74 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=136.1
Q ss_pred CCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEe
Q 035579 564 NLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDI 642 (814)
Q Consensus 564 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l 642 (814)
.+.++..++++++ .++.++ .+..+++|++|++++| .++.+| .+..+++|+.|++++ .+..++....+++|++|++
T Consensus 17 ~l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEEC
Confidence 3566777778876 555555 5667889999999999 677787 788999999999999 7887777777899999999
Q ss_pred cCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCC
Q 035579 643 RGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLT 722 (814)
Q Consensus 643 ~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 722 (814)
++|.+..... +.. ++|++|++++| .+..++. . ..+++|+.|++++ |.++.++ .+..+++|+
T Consensus 93 ~~N~l~~l~~------~~~-~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~ 153 (263)
T 1xeu_A 93 NRNRLKNLNG------IPS-ACLSRLFLDNN--ELRDTDS-L-------IHLKNLEILSIRN-NKLKSIV-MLGFLSKLE 153 (263)
T ss_dssp CSSCCSCCTT------CCC-SSCCEEECCSS--CCSBSGG-G-------TTCTTCCEEECTT-SCCCBCG-GGGGCTTCC
T ss_pred CCCccCCcCc------ccc-CcccEEEccCC--ccCCChh-h-------cCcccccEEECCC-CcCCCCh-HHccCCCCC
Confidence 9998776432 333 99999999998 7777653 2 4789999999999 7899997 788999999
Q ss_pred eEEecCCCCCCccCCCCCcCCccEEeecCCc
Q 035579 723 ELCLRDCPKLKYFPEKGLPSSLLRLSILSCP 753 (814)
Q Consensus 723 ~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~ 753 (814)
.|++++| .++.++.-.-+++|+.|++++|+
T Consensus 154 ~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 154 VLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred EEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 9999995 78888543347899999999986
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=120.65 Aligned_cols=146 Identities=20% Similarity=0.268 Sum_probs=96.5
Q ss_pred cEEEecCCCCceecCCCCCCCCCcceEeeccccccccccc-cccCCCCcceEEecCccCccccCCCCCceeEEEecCCcc
Q 035579 569 REITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPK-GLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 569 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
+.++.+++ .++.+|..+. ++++.|++++| .++.++. .+..+++|+. |++++|.+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~---------------------L~Ls~N~i 68 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRR---------------------IDLSNNQI 68 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCE---------------------EECCSSCC
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCE---------------------EECCCCcC
Confidence 56777775 6677776554 47888888887 4444433 4555555554 55555544
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l 726 (814)
....+ ..|..+++|++|++++| .+..+|...+ ..+++|++|++++ |.++.++. .+..+++|++|++
T Consensus 69 ~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~f------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 69 SELAP----DAFQGLRSLNSLVLYGN--KITELPKSLF------EGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp CEECT----TTTTTCSSCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCH----HHhhCCcCCCEEECCCC--cCCccCHhHc------cCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEEC
Confidence 43322 45677777777777776 6667776542 4567788888887 66777654 6777788888888
Q ss_pred cCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 727 RDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 727 ~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
++ ++++.++...+ +++|++|+++++|
T Consensus 136 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 136 YD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 87 46777776544 6778888888765
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-12 Score=122.32 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=115.7
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
++++++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 457888888887766555666788999999999999888776667788999999999988 5556665 46788899999
Q ss_pred eeccccccccccc-cccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEe
Q 035579 596 RIFQCERLEALPK-GLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~-~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~ 671 (814)
++++| .++.+|. .+..+++|+.|++++ .+..++. ...+++|++|++++|+. ...+++|+.|+++
T Consensus 106 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-----------~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 106 ALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----------DCTCPGIRYLSEW 173 (208)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-----------CCCTTTTHHHHHH
T ss_pred EcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-----------ecCCCCHHHHHHH
Confidence 99988 4555544 578899999999988 6776665 34578999999999943 3455677877777
Q ss_pred cCCCCCccCCccc
Q 035579 672 GCDDDMVSFPPED 684 (814)
Q Consensus 672 ~~~~~l~~i~~~~ 684 (814)
.|. ....+|...
T Consensus 174 ~n~-~~g~ip~~~ 185 (208)
T 2o6s_A 174 INK-HSGVVRNSA 185 (208)
T ss_dssp HHH-CTTTBBCTT
T ss_pred HHh-CCceeeccC
Confidence 742 334555544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-12 Score=133.76 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=92.9
Q ss_pred ceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CC-CCCCcceEeecccccccccc-ccccCCCCcceEEe
Q 035579 545 ETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GL-PCAKLSELRIFQCERLEALP-KGLHNLTSLQELTI 621 (814)
Q Consensus 545 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~-~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l 621 (814)
+.++++++.+.. +|..+ .+.++.|++++| .+..++.. +. .+++|++|++++| .++.++ ..+..+++|++|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 467777765544 44443 245778888887 45555543 44 6778888888887 444443 45677777777777
Q ss_pred cC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcc
Q 035579 622 GG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLT 698 (814)
Q Consensus 622 ~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~ 698 (814)
++ .+..++. ...+++|++|++++|.+....+ ..|..+++|++|++++| .+..+|...+.. ...+++|+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~---~~~l~~L~ 166 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQN--QISRFPVELIKD---GNKLPKLM 166 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS--CCCSCCGGGTC-------CTTCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCC--cCCeeCHHHhcC---cccCCcCC
Confidence 66 5555443 2334566666666665544322 34555556666666555 455555443100 01245555
Q ss_pred eEEeccCCCCccccc-ccccCCC--CCeEEecC
Q 035579 699 DLEIGRFPNLERLSS-SIVDLQN--LTELCLRD 728 (814)
Q Consensus 699 ~L~l~~~~~l~~l~~-~~~~l~~--L~~L~l~~ 728 (814)
.|+|++ |.++.+|. .+..++. |+.|++++
T Consensus 167 ~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 167 LLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp EEECCS-SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred EEECCC-CCCCccCHHHhhhccHhhcceEEecC
Confidence 555555 45555553 3444444 24555555
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-14 Score=157.81 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=122.4
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccC-------------CcccccccCCCCCCccEEE-ecCCCCcee
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCE-------------NLKILPSGLHNLRQLREIT-IQRCGNLVS 581 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~l~~ 581 (814)
..++|+.|++++|. ++.+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.+ .+.
T Consensus 347 ~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD- 423 (567)
T ss_dssp TTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH-
T ss_pred cCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc-
Confidence 34567788888854 45788888888888888887664 3445555666666777666 3333 111
Q ss_pred cCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccC
Q 035579 582 FPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFH 660 (814)
Q Consensus 582 ~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 660 (814)
.|+.+.+.+| .+..+|. ..|+.|++++ .+..+|..+.+++|+.|++++|.+... + ..+.
T Consensus 424 ---------~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l-p----~~~~ 483 (567)
T 1dce_A 424 ---------DLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-P----PALA 483 (567)
T ss_dssp ---------HHHHHHHHHH-HHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-C----GGGG
T ss_pred ---------hhhhhhhhcc-cccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCccccccc-c----hhhh
Confidence 2333333333 2222221 1355555555 444444444456666666666665522 1 4567
Q ss_pred CCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc--ccccccCCCCCeEEecCCCCCCccCCC
Q 035579 661 RFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL--SSSIVDLQNLTELCLRDCPKLKYFPEK 738 (814)
Q Consensus 661 ~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~~ 738 (814)
.+++|+.|++++| .+..+| .. ..+++|++|++++ |.++.+ |..+..+++|+.|++++| .++.+|+.
T Consensus 484 ~l~~L~~L~Ls~N--~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~ 551 (567)
T 1dce_A 484 ALRCLEVLQASDN--ALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGI 551 (567)
T ss_dssp GCTTCCEEECCSS--CCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSC
T ss_pred cCCCCCEEECCCC--CCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccH
Confidence 7778888888876 666666 33 4677888888888 677777 667788888888888874 56666653
Q ss_pred CC-----cCCccEEe
Q 035579 739 GL-----PSSLLRLS 748 (814)
Q Consensus 739 ~l-----~~~L~~L~ 748 (814)
.. +++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 21 56666664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-11 Score=126.12 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=66.9
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcc-e
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLS-E 594 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~-~ 594 (814)
+.++..+.+.+.-...........+++|+.+++++|.+....+..|.++++|+++++.++ ++.++. .|..|++|+ .
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 445667777664333333333334677888888877776666667777777888877765 555655 466677777 7
Q ss_pred Eeecccccccccc-ccccCCCCcceEEecC-ccCccc
Q 035579 595 LRIFQCERLEALP-KGLHNLTSLQELTIGG-ALPSLE 629 (814)
Q Consensus 595 L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~-~~~~l~ 629 (814)
+++.+ .++.++ ..|.++++|+.+++++ .+..++
T Consensus 279 l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 279 LELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp EEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred EEEcc--cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 77765 344443 4566666666666544 444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=119.74 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=92.0
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
+++|+.|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++| .+..++. .+..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 357788888887777666777888888888888888876665566778888888888887 5555654 35677888888
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcc
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~ 647 (814)
++++| .++.+|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+.
T Consensus 118 ~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 88887 5667777777777777777777 5555543 23345666666666654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.5e-12 Score=132.11 Aligned_cols=151 Identities=13% Similarity=0.103 Sum_probs=93.3
Q ss_pred ccccEEEEeccCCcchhhHhhc-CCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 518 ATLESLSVYKCSKLESIAERLD-NNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
+.++.|++++|......+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++| .+..++. .+..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEE
Confidence 3566677776655554455555 6777777777777777666666777777777777776 3445544 46667777777
Q ss_pred eeccccccccccccccCCCCcceEEecC-ccCccccC-----CCCCceeEEEecCCcchhhhhhhcccccCCCCc--ccE
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEED-----GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSS--LRH 667 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~--L~~ 667 (814)
++++|......|..+..+++|+.|++++ .+..++.. ..+++|+.|++++|.+..... ..+..++. ++.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~~~l~~ 193 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL----TDLQKLPAWVKNG 193 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH----HHHHHSCHHHHTT
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH----HHhhhccHhhcce
Confidence 7777744333455667777777777776 55555442 235666666666666554332 23444554 356
Q ss_pred EEEecC
Q 035579 668 LTIDGC 673 (814)
Q Consensus 668 L~l~~~ 673 (814)
|++++|
T Consensus 194 l~l~~N 199 (361)
T 2xot_A 194 LYLHNN 199 (361)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 666664
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-11 Score=116.07 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=44.6
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecc
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQ 599 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 599 (814)
|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|++|++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 44444444444333444455566666666666666665556666666666666666532222244555566666666666
Q ss_pred cc
Q 035579 600 CE 601 (814)
Q Consensus 600 ~~ 601 (814)
|+
T Consensus 163 N~ 164 (220)
T 2v70_A 163 NP 164 (220)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=117.58 Aligned_cols=128 Identities=12% Similarity=0.130 Sum_probs=88.5
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEe
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELR 596 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~ 596 (814)
++++.|++++|......+..+..+++|+.|++++|.+.+..|..+..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 46777777777666555557788888888888888888777788888888888888887 55666654 56678888888
Q ss_pred eccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCc
Q 035579 597 IFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNM 646 (814)
Q Consensus 597 l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~ 646 (814)
+++|......|..+..+++|+.|++++ .+..++. ...+++|+.|++++|+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 888844444455667777777777766 5555443 2234555555555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.7e-11 Score=115.28 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=62.8
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+|+.|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 45555555544444444456677777777777777776666667777777777777764333334556667777777777
Q ss_pred cccccccccccccCCCCcceEEecC
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
+|......|..+..+++|+.|++++
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCcCCEECHHHhcCCCCCCEEEecC
Confidence 7643333355555555554444443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=112.92 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=73.1
Q ss_pred CCCcceEeecccCCc-ccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceE
Q 035579 541 NTSLETIGINFCENL-KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQEL 619 (814)
Q Consensus 541 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 619 (814)
.++|+.|++++|.+. +.+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 355666666666655 4555555666666666666663 4444 455566666666666664333355555555566655
Q ss_pred EecC-ccCccc---cCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCc
Q 035579 620 TIGG-ALPSLE---EDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP 682 (814)
Q Consensus 620 ~l~~-~~~~l~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~ 682 (814)
++++ .+..++ ....+++|++|++++|+........ ...+..+++|++|++++| ....+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~l~~L~~L~l~~n--~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR-ESVFKLLPQLTYLDGYDR--EDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH-HHHHTTCSSCCEETTEET--TSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH-HHHHHhCccCcEecCCCC--Chhhccc
Confidence 5555 333332 2333455666666666544332100 013555666666666665 4444443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-11 Score=111.59 Aligned_cols=134 Identities=17% Similarity=0.160 Sum_probs=78.7
Q ss_pred CCCccEEEecCCCCce--ecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEe
Q 035579 565 LRQLREITIQRCGNLV--SFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDI 642 (814)
Q Consensus 565 l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l 642 (814)
.++|++|++++|. +. .+|..+..+++|++|++++|. ++.+ ..+.. +++|++|++
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~---------------------l~~L~~L~L 78 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPK---------------------LPKLKKLEL 78 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCC---------------------CSSCCEEEE
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhcc---------------------CCCCCEEEC
Confidence 4567777777763 33 566555666666666666663 3333 33333 345555555
Q ss_pred cCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCc--cccccCCCCCCCCCcceEEeccCCCCccccc----ccc
Q 035579 643 RGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP--EDKRLGTALPLPASLTDLEIGRFPNLERLSS----SIV 716 (814)
Q Consensus 643 ~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~ 716 (814)
++|.+....+ ..+..+++|++|++++| .+..+|. .. ..+++|+.|++++ +.+..+|. .+.
T Consensus 79 s~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~~~~~~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 79 SENRIFGGLD----MLAEKLPNLTHLNLSGN--KLKDISTLEPL-------KKLECLKSLDLFN-CEVTNLNDYRESVFK 144 (168)
T ss_dssp ESCCCCSCCC----HHHHHCTTCCEEECBSS--SCCSSGGGGGG-------SSCSCCCEEECCS-SGGGTSTTHHHHHHT
T ss_pred cCCcCchHHH----HHHhhCCCCCEEeccCC--ccCcchhHHHH-------hcCCCCCEEEeeC-CcCcchHHHHHHHHH
Confidence 5555443211 23445667777777775 5555542 22 3567777777777 56666665 566
Q ss_pred cCCCCCeEEecCCCCCCccCC
Q 035579 717 DLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 717 ~l~~L~~L~l~~c~~l~~lp~ 737 (814)
.+++|++|++++| .+..+|.
T Consensus 145 ~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 145 LLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp TCSSCCEETTEET-TSCBCCS
T ss_pred hCccCcEecCCCC-Chhhccc
Confidence 7777777777775 4555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-12 Score=145.40 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=90.5
Q ss_pred CcchhhHhhcCCCCcceEe-ecccCCccccc-----ccCCC--CCCccEEEecCCCCceecCCCCCCCCCcceEeecccc
Q 035579 530 KLESIAERLDNNTSLETIG-INFCENLKILP-----SGLHN--LRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCE 601 (814)
Q Consensus 530 ~~~~~~~~~~~l~~L~~L~-L~~n~~~~~~~-----~~~~~--l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 601 (814)
..+..|..++.+++|+.|+ ++.|....... ..+.. ...|+.|++++| .++.+|. +..+++|+.|++++|
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N- 473 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN- 473 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-
T ss_pred cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-
Confidence 4556777888888898888 55543211000 00000 124777777776 5556665 677777777777777
Q ss_pred ccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccC
Q 035579 602 RLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSF 680 (814)
Q Consensus 602 ~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i 680 (814)
.++.+|..++.+++|+.|++++ .+..+|. +..+++|+.|++++| .+..+
T Consensus 474 ~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~----------------------------l~~l~~L~~L~Ls~N--~l~~~ 523 (567)
T 1dce_A 474 RLRALPPALAALRCLEVLQASDNALENVDG----------------------------VANLPRLQELLLCNN--RLQQS 523 (567)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCCCGG----------------------------GTTCSSCCEEECCSS--CCCSS
T ss_pred cccccchhhhcCCCCCEEECCCCCCCCCcc----------------------------cCCCCCCcEEECCCC--CCCCC
Confidence 4557777676666666666655 4444433 445555566666554 44444
Q ss_pred --CccccccCCCCCCCCCcceEEeccCCCCccccccc----ccCCCCCeEEe
Q 035579 681 --PPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSI----VDLQNLTELCL 726 (814)
Q Consensus 681 --~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~l~~L~~L~l 726 (814)
|... ..+++|+.|++++ |.++.+|+.. ..+++|+.|++
T Consensus 524 ~~p~~l-------~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 524 AAIQPL-------VSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp STTGGG-------GGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcHHH-------hcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 4443 3456666666666 4555555422 33677777653
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-11 Score=110.81 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=66.9
Q ss_pred CCcceEeecccCCc-ccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEE
Q 035579 542 TSLETIGINFCENL-KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELT 620 (814)
Q Consensus 542 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 620 (814)
++++.|++++|.+. +.+|..+..+++|++|++++| .+..+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555444 344444455555555555555 33333 3444455555555555533222454444555555555
Q ss_pred ecC-ccCcc---ccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEec
Q 035579 621 IGG-ALPSL---EEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDG 672 (814)
Q Consensus 621 l~~-~~~~l---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~ 672 (814)
+++ .+..+ .....+++|++|++++|+....... ....+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHCCCcccccCCC
Confidence 555 44333 2234456777777777766544220 002466778888887753
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-10 Score=106.71 Aligned_cols=126 Identities=15% Similarity=0.108 Sum_probs=63.1
Q ss_pred CCCccEEEecCCCCc-eecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCceeEEEec
Q 035579 565 LRQLREITIQRCGNL-VSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIR 643 (814)
Q Consensus 565 l~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~ 643 (814)
.++|++|++++|... ..+|..+..+++|++|++++| .++.+ ..+.. +++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~---------------------l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPK---------------------LNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCC---------------------CTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhc---------------------CCCCCEEECC
Confidence 356666666666322 255555555666666666665 33333 23333 3445555555
Q ss_pred CCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCC--ccccccCCCCCCCCCcceEEeccCCCCccccc----cccc
Q 035579 644 GNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFP--PEDKRLGTALPLPASLTDLEIGRFPNLERLSS----SIVD 717 (814)
Q Consensus 644 ~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~ 717 (814)
+|......+ ..+..+++|++|++++| .+..++ ... ..+++|++|++++ +.++.+|. .+..
T Consensus 73 ~n~i~~~~~----~~~~~l~~L~~L~ls~N--~i~~~~~~~~~-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 73 DNRVSGGLE----VLAEKCPNLTHLNLSGN--KIKDLSTIEPL-------KKLENLKSLDLFN-CEVTNLNDYRENVFKL 138 (149)
T ss_dssp SSCCCSCTH----HHHHHCTTCCEEECTTS--CCCSHHHHGGG-------GGCTTCCEEECTT-CGGGGSTTHHHHHHHH
T ss_pred CCcccchHH----HHhhhCCCCCEEECCCC--cCCChHHHHHH-------hhCCCCCEEeCcC-CcccchHHHHHHHHHH
Confidence 554433211 23334555666666554 333332 222 2455566666665 35555543 3555
Q ss_pred CCCCCeEEec
Q 035579 718 LQNLTELCLR 727 (814)
Q Consensus 718 l~~L~~L~l~ 727 (814)
+++|+.|+++
T Consensus 139 l~~L~~L~l~ 148 (149)
T 2je0_A 139 LPQLTYLDGY 148 (149)
T ss_dssp CTTCCEETTB
T ss_pred CCCcccccCC
Confidence 6666666554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.08 E-value=7.4e-09 Score=110.63 Aligned_cols=213 Identities=10% Similarity=0.085 Sum_probs=133.1
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEee
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRI 597 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l 597 (814)
+|+.+.+.. .....-...|.++.+|+.+++..|.+.......|. +++|+.+.+..+ ++.++. .|..+++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 466666654 22222344677788888888877766655555555 577888888643 556654 5667778888888
Q ss_pred ccccccccccc-cccCCCCcceEEecCccCcccc--CCCCCceeEEEecCCcchhhhh-hhcccccCCCCcccEEEEecC
Q 035579 598 FQCERLEALPK-GLHNLTSLQELTIGGALPSLEE--DGLPTNLHSLDIRGNMEIWKSM-IERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 598 ~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 673 (814)
..+ ++.++. .|.+ .+|+.+.+...+..++. ...+++|+.+++.++....... .....+|.++++|+.+++.+
T Consensus 234 ~~~--l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 234 PEN--VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTT--CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CCC--ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 763 455544 3444 67788877666655554 2335777777777665430000 00115677777888887764
Q ss_pred CCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC---cCCccEEee
Q 035579 674 DDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL---PSSLLRLSI 749 (814)
Q Consensus 674 ~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l---~~~L~~L~i 749 (814)
.+..++...+ ..+++|+.+.+.. .++.|+. .+.++ +|+.+++.+ +.+..++...+ +.+++.|++
T Consensus 310 --~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 310 --SIRILGQGLL------GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp --TCCEECTTTT------TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEE
T ss_pred --ceEEEhhhhh------cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEe
Confidence 4666666553 5567788887754 4677765 66677 788888877 35666665443 356677776
Q ss_pred cC
Q 035579 750 LS 751 (814)
Q Consensus 750 ~~ 751 (814)
-.
T Consensus 378 p~ 379 (401)
T 4fdw_A 378 PA 379 (401)
T ss_dssp CG
T ss_pred CH
Confidence 55
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=108.62 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=50.9
Q ss_pred cCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc--ccccCCCCCeEEecCCCCCCccC
Q 035579 659 FHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS--SIVDLQNLTELCLRDCPKLKYFP 736 (814)
Q Consensus 659 l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~lp 736 (814)
+..+++|++|++++| .+..+|...+ ..+++|++|++++ |.++.+|. .+..+++|+.|++++| .+..+|
T Consensus 60 l~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~ 129 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN--RICRIGEGLD------QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKK 129 (176)
T ss_dssp CCCCSSCCEEECCSS--CCCEECSCHH------HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGST
T ss_pred cccCCCCCEEECCCC--cccccCcchh------hcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcH
Confidence 445555666666655 4555554331 2356666666666 56666665 5666777777777774 455665
Q ss_pred CC---CC--cCCccEEeecCCch
Q 035579 737 EK---GL--PSSLLRLSILSCPL 754 (814)
Q Consensus 737 ~~---~l--~~~L~~L~i~~c~~ 754 (814)
.. .+ +++|++|++++|+.
T Consensus 130 ~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 130 HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp THHHHHHHHCTTCSEETTEECCH
T ss_pred hHHHHHHHHCCccceeCCCcCCH
Confidence 42 11 56777777777653
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=102.82 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=61.3
Q ss_pred cEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcc
Q 035579 569 REITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNME 647 (814)
Q Consensus 569 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~ 647 (814)
+.++++++ .++.+|..+. ++|++|++++| .++.+|..+..+++|+.|++++ .+..++.
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~----------------- 71 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSN----------------- 71 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCT-----------------
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCH-----------------
Confidence 45666665 4556665443 36777777776 4556665555555555555444 3333221
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l 726 (814)
..|..+++|++|++++| .+..++...+ ..+++|+.|++++ |.++.+|. .+..+++|+.|++
T Consensus 72 ---------~~f~~l~~L~~L~Ls~N--~l~~i~~~~f------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 72 ---------QSFSNMTQLLTLILSYN--RLRCIPPRTF------DGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp ---------TTTTTCTTCCEEECCSS--CCCBCCTTTT------TTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEEC
T ss_pred ---------hHccCCCCCCEEECCCC--ccCEeCHHHh------CCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEe
Confidence 23444555555555554 3444443321 3345555555555 44555544 3445555555555
Q ss_pred cC
Q 035579 727 RD 728 (814)
Q Consensus 727 ~~ 728 (814)
++
T Consensus 134 ~~ 135 (193)
T 2wfh_A 134 GA 135 (193)
T ss_dssp CS
T ss_pred CC
Confidence 55
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-08 Score=106.92 Aligned_cols=191 Identities=13% Similarity=0.066 Sum_probs=123.1
Q ss_pred HhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccc-cccccCCC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEAL-PKGLHNLT 614 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~ 614 (814)
..|.++.+|+.+.+..+ ....-...+.++..|+.+.+..+ ...+........+|+.+.+... ...+ ...+..+.
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~ 253 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCT 253 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCS
T ss_pred ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccc
Confidence 34666777777776654 33333455667777777766553 2334444445567777776543 2333 23556777
Q ss_pred CcceEEecCccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCC
Q 035579 615 SLQELTIGGALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALP 692 (814)
Q Consensus 615 ~L~~L~l~~~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~ 692 (814)
.++.+.+......+.. ...+..++.+......... ..+..+.+|+.+.+.+ .+..|+...+ .
T Consensus 254 ~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~---~i~~I~~~aF------~ 317 (394)
T 4fs7_A 254 DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLD---SVKFIGEEAF------E 317 (394)
T ss_dssp SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECT---TCCEECTTTT------T
T ss_pred cceeEEcCCCcceeeccccccccccceeccCceeecc-------cccccccccccccccc---ccceechhhh------c
Confidence 7777777664333333 2335677777666553211 4677888888888865 4667766553 5
Q ss_pred CCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecC
Q 035579 693 LPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILS 751 (814)
Q Consensus 693 ~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~ 751 (814)
.+++|+.+++.. .++.|+. .+.++++|+.+++.. .++.++...+ +++|+++++..
T Consensus 318 ~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 678888888864 5778876 778888899888865 4888887766 67888888754
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-10 Score=106.09 Aligned_cols=127 Identities=21% Similarity=0.192 Sum_probs=65.9
Q ss_pred cccEEEEeccCCcchhhHhhcCCC-CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCC-CCCCCcceEe
Q 035579 519 TLESLSVYKCSKLESIAERLDNNT-SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGG-LPCAKLSELR 596 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~ 596 (814)
+|+.|++++|... .++. +..+. +|+.|++++|.+.+. ..+..+++|++|++++| .+..+|..+ ..+++|++|+
T Consensus 20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 4555555555433 2332 33333 666666666665554 45566666666666665 344555433 4556666666
Q ss_pred eccccccccccc--cccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 597 IFQCERLEALPK--GLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 597 l~~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
+++| .++.+|. .+..+ ++|+.|++++|+....... ....+..+++|+.|++++|
T Consensus 95 L~~N-~i~~~~~~~~l~~l---------------------~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNN-SLVELGDLDPLASL---------------------KSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSC-CCCCGGGGGGGGGC---------------------TTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEEC
T ss_pred CCCC-cCCcchhhHhhhcC---------------------CCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcC
Confidence 6666 3444543 34444 4555555555554332110 0012556666777776665
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-10 Score=134.92 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=83.5
Q ss_pred hhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccC
Q 035579 533 SIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHN 612 (814)
Q Consensus 533 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 612 (814)
..+..+..+.+|+.|+|++|.+. .+|..+..+++|++|+|++| .+..+|..+..+++|++|+|++| .++.+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcC
Confidence 45667778888888888888776 55566667888888888887 45577777777888888888888 45577888888
Q ss_pred CCCcceEEecC-ccCcccc-CCCCCceeEEEecCCcchhhhh
Q 035579 613 LTSLQELTIGG-ALPSLEE-DGLPTNLHSLDIRGNMEIWKSM 652 (814)
Q Consensus 613 l~~L~~L~l~~-~~~~l~~-~~~~~~L~~L~l~~n~~~~~~~ 652 (814)
+++|++|+|++ .+..+|. .+.+++|++|+|++|++....+
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 88888888887 6666665 5557888888888888765544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-09 Score=99.76 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=73.0
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
+++|++|++++|....... ..+..+++|++|++++| .+..++...+ ..+++|++|++++ +.++.+|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~-N~l~~~~~ 93 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSQN--QIQSLPDGVF------DKLTKLTILYLHE-NKLQSLPN 93 (177)
T ss_dssp CTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCT
T ss_pred CCCCcEEEeCCCcccEeCH----HHhcCcccccEEECCCC--cceEeChhHc------cCCCccCEEECCC-CCccccCH
Confidence 3566777777766544322 44677778888888776 6666666532 4577888888888 67777776
Q ss_pred -ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 714 -SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 714 -~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
.+..+++|++|+++++ .++.+|...+ +++|++|++++|+
T Consensus 94 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 4577788888888874 6777776543 6778888888775
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-09 Score=101.43 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=70.3
Q ss_pred ccccEEEEeccCCcchhhH-hhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEe
Q 035579 518 ATLESLSVYKCSKLESIAE-RLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELR 596 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 596 (814)
.++++|++++|......+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|......+..+..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3677777777654443332 377788888888888888777777788888888888888743333333466777888888
Q ss_pred eccccccccccccccCCCCcceEEecC
Q 035579 597 IFQCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 597 l~~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
+++|......|..+..+++|++|++++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 888754444565665555555555544
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-09 Score=100.98 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=62.4
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+|++|++++|...+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 46666666665555556677778888888888888887777778888888888888875555556677778888888888
Q ss_pred ccccc
Q 035579 599 QCERL 603 (814)
Q Consensus 599 ~~~~l 603 (814)
+|+..
T Consensus 135 ~N~l~ 139 (192)
T 1w8a_A 135 SNPFN 139 (192)
T ss_dssp TCCBC
T ss_pred CCCcc
Confidence 88543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-08 Score=106.77 Aligned_cols=212 Identities=10% Similarity=0.131 Sum_probs=159.8
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
+|+.+.+..+ ....-..+|.+ .+|+.+.+.. .+...-+.+|.+|++|+.+++.+| .+..++.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 4666666553 22223345666 4799999986 555566678999999999999987 778888866667899999997
Q ss_pred ccccccccc-ccccCCCCcceEEecCccCccccCCC-CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCC
Q 035579 599 QCERLEALP-KGLHNLTSLQELTIGGALPSLEEDGL-PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDD 676 (814)
Q Consensus 599 ~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 676 (814)
.+ ++.++ ..|.++++|+.+++..++..++...+ ..+|+.+.+.++ ...... .+|.++++|+.+++.++...
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNG-VTNIAS----RAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETT-CCEECT----TTTTTCTTCCEEEEESSCCC
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCC-ccEECh----hHhhCCCCCCEEEeCCcccc
Confidence 54 55554 47889999999999886666655322 278999999654 222212 68999999999999886211
Q ss_pred ---CccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeec
Q 035579 677 ---MVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSIL 750 (814)
Q Consensus 677 ---l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~ 750 (814)
...++...+ ..+++|+.+++.+ .++.|+. .+.++++|+.+.+.. +++.++...+ + +|+++++.
T Consensus 285 ~~~~~~I~~~aF------~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 285 DDPEAMIHPYCL------EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp CCTTCEECTTTT------TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEEC
T ss_pred CCcccEECHHHh------hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEc
Confidence 225666553 6789999999985 5899987 888999999999965 5899988777 6 99999999
Q ss_pred CC
Q 035579 751 SC 752 (814)
Q Consensus 751 ~c 752 (814)
++
T Consensus 354 ~n 355 (401)
T 4fdw_A 354 GT 355 (401)
T ss_dssp CS
T ss_pred CC
Confidence 86
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-10 Score=132.58 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=78.7
Q ss_pred cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCcccc-CCCC
Q 035579 557 ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE-DGLP 634 (814)
Q Consensus 557 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~-~~~~ 634 (814)
..+..+..+++|+.|+|++| .+..+|..+..+++|++|+|++| .+..+|..+..+++|+.|+|++ .+..+|. .+.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 44677888999999999998 56688887778899999999998 5668888888888888888888 6666654 3446
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecC
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGC 673 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 673 (814)
++|++|+|++|.+... + ..|..+++|+.|+|++|
T Consensus 293 ~~L~~L~L~~N~l~~l-p----~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTL-P----WEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTCSEEECCSSCCCCC-C----SSTTSCTTCCCEECTTS
T ss_pred CCCCEEECCCCCCCcc-C----hhhhcCCCccEEeCCCC
Confidence 7777777777765422 1 44677777777777775
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-11 Score=118.30 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=98.8
Q ss_pred ccEEEEeccC-CcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 520 LESLSVYKCS-KLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
++...+.+.. .++.+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 4444444432 345566688888899999998888776 55 7778888999999887 566777656666788899998
Q ss_pred cccccccccccccCCCCcceEEecC-ccCcccc---CCCCCceeEEEecCCcchhhhhh------hcccccCCCCcccEE
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG-ALPSLEE---DGLPTNLHSLDIRGNMEIWKSMI------ERGRGFHRFSSLRHL 668 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~n~~~~~~~~------~~~~~l~~l~~L~~L 668 (814)
+| .++.+| .+..+++|+.|++++ .+..++. ...+++|++|++++|+.....+. .....+..+++|+.|
T Consensus 102 ~N-~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CC-cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 88 556666 577778888888887 5555432 45567788888888876554321 000125566667766
Q ss_pred E
Q 035579 669 T 669 (814)
Q Consensus 669 ~ 669 (814)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9.9e-12 Score=119.59 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=94.5
Q ss_pred hHhhcCCCCcceEeecccCCcccccc------cCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccc
Q 035579 535 AERLDNNTSLETIGINFCENLKILPS------GLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPK 608 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~ 608 (814)
...+.....++.++++.+.+.+..|. .+..+++|++|++++| .+..+| .+..+++|++|++++| .++.+|.
T Consensus 11 ~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~ 87 (198)
T 1ds9_A 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIEN 87 (198)
T ss_dssp HHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSS
T ss_pred HHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccc
Confidence 33466677888888888888776665 7778888888888887 566677 6777788888888888 5556766
Q ss_pred cccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCc--ccc
Q 035579 609 GLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPP--EDK 685 (814)
Q Consensus 609 ~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~--~~~ 685 (814)
.+..+++|+.|++++ .+..++. +..+++|++|++++| .+..++. ..
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~l~~----------------------------~~~l~~L~~L~l~~N--~i~~~~~~~~l- 136 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIASLSG----------------------------IEKLVNLRVLYMSNN--KITNWGEIDKL- 136 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCCHHH----------------------------HHHHHHSSEEEESEE--ECCCHHHHHHH-
T ss_pred hhhcCCcCCEEECcCCcCCcCCc----------------------------cccCCCCCEEECCCC--cCCchhHHHHH-
Confidence 555555555555555 3333332 334455555555554 3443332 11
Q ss_pred ccCCCCCCCCCcceEEeccCCCCccccc-----------ccccCCCCCeEE
Q 035579 686 RLGTALPLPASLTDLEIGRFPNLERLSS-----------SIVDLQNLTELC 725 (814)
Q Consensus 686 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-----------~~~~l~~L~~L~ 725 (814)
..+++|++|++++ |.+...++ .+..+++|+.|+
T Consensus 137 ------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 137 ------AALDKLEDLLLAG-NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ------TTTTTCSEEEECS-CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ------hcCCCCCEEEecC-CccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3456666666666 33433211 267788888886
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.8e-09 Score=98.47 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=71.5
Q ss_pred cccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 517 PATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
++++++|++++|.. ..+|..+..+++|+.|++++|.+.+..+..|..+++|++|++++| .+..++. .+..+++|++|
T Consensus 30 ~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 30 PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEE
Confidence 34677777777654 356677888888888888888888777777888888888888887 4455543 56777788888
Q ss_pred eeccccccccccc-cccCCCCcceEEecC
Q 035579 596 RIFQCERLEALPK-GLHNLTSLQELTIGG 623 (814)
Q Consensus 596 ~l~~~~~l~~lp~-~~~~l~~L~~L~l~~ 623 (814)
++++| .++.+|. .+..+++|+.|++++
T Consensus 108 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 108 SLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp ECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred ECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 88887 4445543 344555555444443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=94.36 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=40.7
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEee
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRI 597 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l 597 (814)
+++.|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.+|. .+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEEC
Confidence 4555555554443333334455555555555555555444444455555555555555 3333333 2344555555555
Q ss_pred ccc
Q 035579 598 FQC 600 (814)
Q Consensus 598 ~~~ 600 (814)
++|
T Consensus 108 ~~N 110 (177)
T 2o6r_A 108 DTN 110 (177)
T ss_dssp CSS
T ss_pred cCC
Confidence 555
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.1e-07 Score=97.57 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=35.1
Q ss_pred cccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecC
Q 035579 657 RGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRD 728 (814)
Q Consensus 657 ~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~ 728 (814)
.+|.++.+|+.+++.+ .+..|....+ ..+++|+.+++.. .++.|+. .+.++++|+.+++..
T Consensus 314 ~aF~~c~~L~~i~lp~---~v~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPY---LVEEIGKRSF------RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECCCT---TCCEECTTTT------TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hhhcCCCCCCEEEeCC---cccEEhHHhc------cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 4456666666666643 3555554432 4556666666654 2566655 566666666666654
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.63 E-value=9.4e-08 Score=88.83 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=58.1
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
+++|++|++++|.+....+ ..|..+++|++|++++| .+..+|...+ ..+++|++|++++ |.++.+|.
T Consensus 29 ~~~l~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N--~l~~l~~~~f------~~l~~L~~L~L~~-N~l~~~~~ 95 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEP----GVFDRLTQLTRLDLDNN--QLTVLPAGVF------DKLTQLTQLSLND-NQLKSIPR 95 (170)
T ss_dssp CTTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCT
T ss_pred CCCCcEEEcCCCcCCccCh----hhhcCcccCCEEECCCC--CcCccChhhc------cCCCCCCEEECCC-CccCEeCH
Confidence 3667777777776655433 45777788888888876 6667776542 4567778888877 67777776
Q ss_pred -ccccCCCCCeEEecCC
Q 035579 714 -SIVDLQNLTELCLRDC 729 (814)
Q Consensus 714 -~~~~l~~L~~L~l~~c 729 (814)
.+..+++|++|+++++
T Consensus 96 ~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 96 GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhcCCCCCCEEEeCCC
Confidence 4677777888877774
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=88.87 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=58.6
Q ss_pred CCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 634 PTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
+++|++|++++|.+....+ ..|..+++|++|++++| .+..+|...+ ..+++|++|++++ |.++.+|.
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N--~l~~i~~~~~------~~l~~L~~L~L~~-N~l~~l~~ 98 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEP----GVFDHLVNLQQLYFNSN--KLTAIPTGVF------DKLTQLTQLDLND-NHLKSIPR 98 (174)
T ss_dssp CTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCS-SCCCCCCT
T ss_pred CCCCcEEEeCCCCccccCH----HHhcCCcCCCEEECCCC--CCCccChhHh------CCcchhhEEECCC-CccceeCH
Confidence 3667777777776655433 55777888888888876 6777776542 4567788888887 67777776
Q ss_pred -ccccCCCCCeEEecCC
Q 035579 714 -SIVDLQNLTELCLRDC 729 (814)
Q Consensus 714 -~~~~l~~L~~L~l~~c 729 (814)
.+..+++|++|+++++
T Consensus 99 ~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 99 GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTCTTCSEEECCSS
T ss_pred HHhccccCCCEEEeCCC
Confidence 3677778888888774
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.2e-08 Score=89.55 Aligned_cols=98 Identities=20% Similarity=0.330 Sum_probs=57.2
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEeecc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELRIFQ 599 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~ 599 (814)
+.++++++. ++.+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 445555533 344554332 56777777777776666666777777777777776 45555553 45666777777776
Q ss_pred cccccccccc-ccCCCCcceEEecC
Q 035579 600 CERLEALPKG-LHNLTSLQELTIGG 623 (814)
Q Consensus 600 ~~~l~~lp~~-~~~l~~L~~L~l~~ 623 (814)
| .++.+|.. +..+++|+.|++++
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCS
T ss_pred C-ccceeCHHHhccccCCCEEEeCC
Confidence 6 44444432 44555555554444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=87.67 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=52.2
Q ss_pred ccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCC-CCCCCCcceEeec
Q 035579 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEG-GLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 598 (814)
.+.++++++. ++.+|..+ .++|+.|++++|.+.+..|..+..+++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 3455555533 33344333 256666666666666665666666666666666665 34445443 3556666666666
Q ss_pred cccccccccc-cccCCCCcceEEecC
Q 035579 599 QCERLEALPK-GLHNLTSLQELTIGG 623 (814)
Q Consensus 599 ~~~~l~~lp~-~~~~l~~L~~L~l~~ 623 (814)
+| .++.+|. .+..+++|+.|++++
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCC
Confidence 66 3334433 344444444444433
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.1e-06 Score=87.40 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=54.2
Q ss_pred hhcCC-CCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccC--Ccccc-ccccCCCCCcceEeeecCCCCc
Q 035579 328 LQDIC-SLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCE--GLVKL-PQSSLSLCSLREIGIYKCSSLV 403 (814)
Q Consensus 328 ~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~--~~~~~-~~~~~~l~~L~~L~L~~~~~l~ 403 (814)
|..+. .|+.+.+.. .++.+....|.. |.+|+.+.+..+. .+..+ ...|..+.+|+.+.+.. .++
T Consensus 59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~--------C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~ 126 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPD--TVTEIGSNAFYN--------CTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVT 126 (394)
T ss_dssp TTTCCSCCCEEEECT--TCCEECTTTTTT--------CTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCS
T ss_pred ccCCCCcCEEEEECC--CeeEEhHHHhhC--------CccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccc
Confidence 44443 466666654 355554433221 1566666665542 12222 23456666777666643 344
Q ss_pred ccCC--CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEec
Q 035579 404 SFPE--VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEG 447 (814)
Q Consensus 404 ~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 447 (814)
.++. +..+.+|+.+.+... +..+....+ ..+.+|+.+.+..
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F-~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG--VTSVADGMF-SYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEECCT
T ss_pred eehhhhhhhhcccccccccce--eeeecccce-ecccccccccccc
Confidence 4443 333667777777543 334444433 5566666666653
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-05 Score=85.71 Aligned_cols=279 Identities=12% Similarity=0.140 Sum_probs=133.9
Q ss_pred hhhhhhcCCCCCeEEEecC--CCcccchhhHHHHHHHHhhhccccccEEEeeccCCcccc-ccccCCCCCcceEeeecCC
Q 035579 324 HNELLQDICSLRRLTIRSC--PKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKL-PQSSLSLCSLREIGIYKCS 400 (814)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~ 400 (814)
....|.++.+|+.+.+... ..++.+....|.. |.+|+.+.+..+ +..+ ...+..+.+|+.+.+..
T Consensus 79 g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~--------c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~-- 146 (394)
T 4gt6_A 79 GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF--------CSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPE-- 146 (394)
T ss_dssp CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT--------CTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCT--
T ss_pred hHHHhhCCccCceEeecCCCCCeeeEechhhchh--------cccceeeccCCc--cceehhhhhhhhcccccccccc--
Confidence 4456778888888888653 3456655443321 155665555433 2222 33567788888888864
Q ss_pred CCcccCC--CCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCccccccc--CcCccceeeeccccCCcc
Q 035579 401 SLVSFPE--VALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQ--LPSSLKNLQIHGCYNIKT 476 (814)
Q Consensus 401 ~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~ 476 (814)
.++.++. +..+.+|+.+.+..+ +..+....| . ..+|+.+.+... ++.+.... .+.+++........ ..
T Consensus 147 ~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF-~-~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~-~~- 218 (394)
T 4gt6_A 147 GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAF-T-GTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSES-YP- 218 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-T-TCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSS-SC-
T ss_pred eeeeecccceecccccccccccce--eeEeccccc-c-ccceeEEEECCc--ccccccchhhhccccceecccccc-cc-
Confidence 3455553 444788888888764 555555553 2 356777777542 22222221 12223332221110 00
Q ss_pred cccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcc
Q 035579 477 LTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLK 556 (814)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 556 (814)
. ....-...+...............+..+.+.. .....-...|.++.+|+.+.+..+. ..
T Consensus 219 -----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~-~~ 278 (394)
T 4gt6_A 219 -----A-------------IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV-VS 278 (394)
T ss_dssp -----B-------------SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC-CE
T ss_pred -----c-------------ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc-ce
Confidence 0 00000000000000000000001122222211 1111112346666667766665432 22
Q ss_pred cccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecccccccccc-ccccCCCCcceEEecCccCcccc--CC
Q 035579 557 ILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELTIGGALPSLEE--DG 632 (814)
Q Consensus 557 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~l~~--~~ 632 (814)
.-...+.++++|+.+.+.. .+..++. .|..|.+|+.+++..+ ++.+. ..|.++.+|+.+.+...+..+.. ..
T Consensus 279 I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~ 354 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSSVTKIPESAFS 354 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGT
T ss_pred ecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcccCEEhHhHhh
Confidence 3334566677777777753 3555554 4556677777777542 44442 35666667777766554444433 22
Q ss_pred CCCceeEEEecCCc
Q 035579 633 LPTNLHSLDIRGNM 646 (814)
Q Consensus 633 ~~~~L~~L~l~~n~ 646 (814)
.+++|+.+++.++.
T Consensus 355 ~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 355 NCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEESSCH
T ss_pred CCCCCCEEEECCce
Confidence 34556666655543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-08 Score=105.27 Aligned_cols=165 Identities=16% Similarity=0.073 Sum_probs=79.6
Q ss_pred cccEEEEeccCCcchhhHhhcC-----CCCcceEeecccCCcccccccC-CCCCCccEEEecCCCCceecC-----CCC-
Q 035579 519 TLESLSVYKCSKLESIAERLDN-----NTSLETIGINFCENLKILPSGL-HNLRQLREITIQRCGNLVSFP-----EGG- 586 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~-----~~~- 586 (814)
.|+.|++++|.........+.. .++|+.|+|++|.+.......+ ..+++|++|++++|. ++... ..+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHH
Confidence 5666666666554433222222 2567777777776643221222 234566777777663 22211 111
Q ss_pred CCCCCcceEeecccccccc-----ccccccCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCC
Q 035579 587 LPCAKLSELRIFQCERLEA-----LPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHR 661 (814)
Q Consensus 587 ~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 661 (814)
...++|++|++++|. ++. ++..+.. .++|++|++++|.+...........+..
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~---------------------~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAG---------------------NTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHT---------------------CSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhc---------------------CCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 123466666666663 222 2222222 3456666666666544332211234556
Q ss_pred CCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccc
Q 035579 662 FSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERL 711 (814)
Q Consensus 662 l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 711 (814)
.++|++|++++| .+....... +..++...++|++|+|++ |.++..
T Consensus 210 ~~~L~~L~Ls~N--~i~~~g~~~--l~~~L~~~~~L~~L~Ls~-N~i~~~ 254 (372)
T 3un9_A 210 NRQLQELNVAYN--GAGDTAALA--LARAAREHPSLELLHLYF-NELSSE 254 (372)
T ss_dssp CSCCCEEECCSS--CCCHHHHHH--HHHHHHHCSSCCEEECTT-SSCCHH
T ss_pred CCCcCeEECCCC--CCCHHHHHH--HHHHHHhCCCCCEEeccC-CCCCHH
Confidence 667777777776 332211100 001112346788888887 456543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=91.81 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=44.0
Q ss_pred cccccEEEEec-cCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 517 PATLESLSVYK-CSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 517 ~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
.++|+.|+|++ |......+..|.++++|+.|+|++|.+.+..|..|..+++|++|+|++| .+..+|........|+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEE
Confidence 34466666654 3333333345556666666666666655555555556666666666655 344454433222236666
Q ss_pred eeccc
Q 035579 596 RIFQC 600 (814)
Q Consensus 596 ~l~~~ 600 (814)
++.+|
T Consensus 109 ~l~~N 113 (347)
T 2ifg_A 109 VLSGN 113 (347)
T ss_dssp ECCSS
T ss_pred EeeCC
Confidence 66555
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00017 Score=76.71 Aligned_cols=291 Identities=12% Similarity=0.098 Sum_probs=135.2
Q ss_pred ccCCCCCcceEeeecCCCCcccCCC--CCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCc-
Q 035579 384 SSLSLCSLREIGIYKCSSLVSFPEV--ALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLP- 460 (814)
Q Consensus 384 ~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~- 460 (814)
++....+|+.+.+.. .++.++.- ..+.+|+.+.+..+ +..+....| .++ +|+.+.+.. .++.++...+.
T Consensus 41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF-~~c-~l~~i~~~~--~l~~I~~~aF~~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAF-ADT-KLQSYTGME--RVKKFGDYVFQG 112 (379)
T ss_dssp TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTT-TTC-CCCEEEECT--TCCEECTTTTTT
T ss_pred ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhh-cCC-CCceEECCc--eeeEeccceecc
Confidence 455567788888864 57777753 44788888888654 666666655 444 566666543 34444433221
Q ss_pred CccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcC
Q 035579 461 SSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDN 540 (814)
Q Consensus 461 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 540 (814)
.+|+.+.+... +. .+....+. ..+++.+.+... ....-...+..
T Consensus 113 ~~L~~i~lp~~--~~------~i~~~~F~---------------------------~~~l~~~~~~~~-v~~i~~~~f~~ 156 (379)
T 4h09_A 113 TDLDDFEFPGA--TT------EIGNYIFY---------------------------NSSVKRIVIPKS-VTTIKDGIGYK 156 (379)
T ss_dssp CCCSEEECCTT--CC------EECTTTTT---------------------------TCCCCEEEECTT-CCEECSCTTTT
T ss_pred CCcccccCCCc--cc------cccccccc---------------------------cceeeeeeccce-eeccccchhcc
Confidence 23444443321 11 00110000 011222222110 11111122344
Q ss_pred CCCcceEeecccCCcc------------cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccc-c
Q 035579 541 NTSLETIGINFCENLK------------ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEAL-P 607 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~------------~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~l-p 607 (814)
+.+++...+..+.... .....+.....+..+.+... ........+..+.+|+.+.+..+ +..+ .
T Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~ 233 (379)
T 4h09_A 157 AENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGD 233 (379)
T ss_dssp CTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECT
T ss_pred cccccccccccccceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc--eeEEcc
Confidence 4444444443322111 11122333344444444332 11112223444556666666442 2222 2
Q ss_pred ccccCCCCcceEEecCccCccccC--CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCcccc
Q 035579 608 KGLHNLTSLQELTIGGALPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDK 685 (814)
Q Consensus 608 ~~~~~l~~L~~L~l~~~~~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~ 685 (814)
..+..+..|+.+.+...+..+... ..+.+|+.+.+..+- ..... ..|..+++|+.+.+.++ .++.|+...+
T Consensus 234 ~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i-~~i~~----~aF~~c~~L~~i~l~~~--~i~~I~~~aF 306 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKV-KTVPY----LLCSGCSNLTKVVMDNS--AIETLEPRVF 306 (379)
T ss_dssp TTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCC-SEECT----TTTTTCTTCCEEEECCT--TCCEECTTTT
T ss_pred ccccCCccceEEEcCCCccEeCccccceeehhccccccccc-eeccc----ccccccccccccccccc--ccceehhhhh
Confidence 345566666666665544444332 224556666554431 11111 45666666666666553 4555555443
Q ss_pred ccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCC
Q 035579 686 RLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEK 738 (814)
Q Consensus 686 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~ 738 (814)
..+.+|+.+.+.. .++.|+. .+.++++|+.+.+.. .++.|...
T Consensus 307 ------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 307 ------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESG 350 (379)
T ss_dssp ------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred ------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchh
Confidence 4556666666653 3556655 555666666665543 34555443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-06 Score=89.19 Aligned_cols=99 Identities=26% Similarity=0.260 Sum_probs=72.2
Q ss_pred EEEEeccCCcchhhHhhcCCCCcceEeecc-cCCcccccccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeecc
Q 035579 522 SLSVYKCSKLESIAERLDNNTSLETIGINF-CENLKILPSGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIFQ 599 (814)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 599 (814)
.++.++++.+..+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|. +..++ ..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 345555435666787 88888888888885 78877777788888888888888884 55554 4567888888888888
Q ss_pred ccccccccccccCCCCcceEEecC
Q 035579 600 CERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 600 ~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
| .+..+|........|+.|++.+
T Consensus 90 N-~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCS
T ss_pred C-ccceeCHHHcccCCceEEEeeC
Confidence 8 5566665443333488888887
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.2e-06 Score=89.62 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=81.8
Q ss_pred hHhhcCCCCcceEeecccCCc---------ccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccccc
Q 035579 535 AERLDNNTSLETIGINFCENL---------KILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEA 605 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~---------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ 605 (814)
......+++|+.|.+...... +.+...+..+|+|++|++++|..+ .++. + .+++|++|++..|.....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 334556677888877654221 123333455677777777776322 2332 2 256777777776632221
Q ss_pred ccccc--cCCCCcceEEecCccCccccCCCCCceeEEEecCCcchhhh-hhhccccc--CCCCcccEEEEecCCCCCcc-
Q 035579 606 LPKGL--HNLTSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKS-MIERGRGF--HRFSSLRHLTIDGCDDDMVS- 679 (814)
Q Consensus 606 lp~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~l--~~l~~L~~L~l~~~~~~l~~- 679 (814)
....+ ..+++|+.|+|+.. .+...... .......+ ..+++|+.|++.+| .+..
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~-------------------~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--~i~~~ 267 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVG-------------------VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--EEQNV 267 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECB-------------------CGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--TTHHH
T ss_pred HHHHHHHccCCCCcEEEEecc-------------------ccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--CCchH
Confidence 11122 24566666655310 00000000 00000011 23566666666654 2211
Q ss_pred CCccccccCCCCCCCCCcceEEeccCCCCcc-----cccccccCCCCCeEEecCCCCCC
Q 035579 680 FPPEDKRLGTALPLPASLTDLEIGRFPNLER-----LSSSIVDLQNLTELCLRDCPKLK 733 (814)
Q Consensus 680 i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~ 733 (814)
.+..+... ..+++|++|+|+. +.++. ++..+..+++|+.|++++| .+.
T Consensus 268 ~~~~la~a----~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~ 320 (362)
T 2ra8_A 268 VVEMFLES----DILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLS 320 (362)
T ss_dssp HHHHHHHC----SSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCC
T ss_pred HHHHHHhC----ccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCC
Confidence 11111000 2357777777776 55654 4445567788999999876 344
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0002 Score=76.06 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=75.0
Q ss_pred cCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeecccccccccc-ccccCCCCcceEEecCccCcccc--CCCCCc
Q 035579 561 GLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALP-KGLHNLTSLQELTIGGALPSLEE--DGLPTN 636 (814)
Q Consensus 561 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~l~~--~~~~~~ 636 (814)
.+..+.+|+.+.+..+ +..+.. .+..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+...+..++. ...+++
T Consensus 212 ~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccccceeccccccccccc
Confidence 3445555666655432 333332 3445566666666443 33332 24556666666666554444443 233567
Q ss_pred eeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc
Q 035579 637 LHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS 713 (814)
Q Consensus 637 L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 713 (814)
|+.+.+.++....... .+|.++.+|+.+.+.. .+..|....+ ..+++|+++.+.. .++.|..
T Consensus 288 L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~---~l~~I~~~aF------~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 288 LTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPT---ALKTIQVYAF------KNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp CCEEEECCTTCCEECT----TTTTTCTTCCEEECCT---TCCEECTTTT------TTCTTCCCCCCCT--TCCEECT
T ss_pred cccccccccccceehh----hhhcCCCCCCEEEcCc---cccEEHHHHh------hCCCCCCEEEECC--ccCEEch
Confidence 7777776654333222 5678888888888865 4666666543 5567777777654 3555554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.7e-08 Score=102.15 Aligned_cols=172 Identities=16% Similarity=0.077 Sum_probs=100.6
Q ss_pred CCCcceEeecccCCccccc----ccCC-CCCCccEEEecCCCCcee-cCCCCCCCCCcceEeeccccccccc-cccccCC
Q 035579 541 NTSLETIGINFCENLKILP----SGLH-NLRQLREITIQRCGNLVS-FPEGGLPCAKLSELRIFQCERLEAL-PKGLHNL 613 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~~~~----~~~~-~l~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l 613 (814)
++.|+.|++++|.+..... ..+. ..++|++|++++|..-.. +......+++|++|++++|. ++.. ...+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 4678888888888764322 2222 236788888887742111 11111224467777777763 2221 1111000
Q ss_pred CCcceEEecCccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCC
Q 035579 614 TSLQELTIGGALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPL 693 (814)
Q Consensus 614 ~~L~~L~l~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~ 693 (814)
+ ....++|++|++++|.+...........+...++|++|++++| .+...... .+..++..
T Consensus 150 --------------L--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~~--~L~~~L~~ 209 (372)
T 3un9_A 150 --------------L--LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLE--LLAAQLDR 209 (372)
T ss_dssp --------------H--HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHHH--HHHHHGGG
T ss_pred --------------H--HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHHH--HHHHHHhc
Confidence 0 0124688999999998766443322245678899999999997 44321100 01111245
Q ss_pred CCCcceEEeccCCCCcc-----cccccccCCCCCeEEecCCCCCCcc
Q 035579 694 PASLTDLEIGRFPNLER-----LSSSIVDLQNLTELCLRDCPKLKYF 735 (814)
Q Consensus 694 ~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l 735 (814)
.++|++|++++ |.++. +...+...++|++|++++| .++..
T Consensus 210 ~~~L~~L~Ls~-N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~ 254 (372)
T 3un9_A 210 NRQLQELNVAY-NGAGDTAALALARAAREHPSLELLHLYFN-ELSSE 254 (372)
T ss_dssp CSCCCEEECCS-SCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred CCCcCeEECCC-CCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHH
Confidence 67999999999 56764 3345567799999999996 56654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.5e-06 Score=86.60 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=42.8
Q ss_pred ccccEEEeeccCC---------ccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcC
Q 035579 365 CRLEYLILSCCEG---------LVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCD 435 (814)
Q Consensus 365 ~~L~~L~L~~~~~---------~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 435 (814)
++|+.|.+..... ...+...+..+|+|++|.|++|..+ .++.+ ..++|++|++..|.........+...
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 6677776654321 0123344556777888888775332 23332 26777777777665221111111113
Q ss_pred CCCCccEEEEec
Q 035579 436 TNSSLEILYIEG 447 (814)
Q Consensus 436 ~l~~L~~L~l~~ 447 (814)
.+++|+.|+|+.
T Consensus 217 ~lp~L~~L~L~~ 228 (362)
T 2ra8_A 217 DLPNLEKLVLYV 228 (362)
T ss_dssp BCTTCCEEEEEC
T ss_pred cCCCCcEEEEec
Confidence 567777777753
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.2e-06 Score=78.21 Aligned_cols=87 Identities=9% Similarity=0.078 Sum_probs=48.0
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC--CCCC----CCCCcEEEecccCCCCCCchhhhcCCCCC
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP--EVAL----PSKLEKIHIGACDALKSLPEAWMCDTNSS 439 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 439 (814)
+|+.||+++|.+...--..+..+++|++|+|++|..+++-. .++. .++|++|++++|..+++-.-..+ ..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCC
Confidence 45666666665433323345566777777777776665522 1222 23566666666655544222222 44667
Q ss_pred ccEEEEecCCCCcc
Q 035579 440 LEILYIEGCRSLTY 453 (814)
Q Consensus 440 L~~L~l~~~~~l~~ 453 (814)
|++|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777766654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.98 E-value=5.4e-06 Score=75.65 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=46.4
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCC----CCCcceEEeccCCCCcc
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPL----PASLTDLEIGRFPNLER 710 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~ 710 (814)
..|++|++++|.+..... ..+..+++|++|++++|. .+ .+..-. .+.. .++|++|+|++|++++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~-~I---tD~gL~---~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCH-YI---EDGCLE---RLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCT-TC---CHHHHH---HHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCC-cc---CHHHHH---HHHhcccccCCCCEEEcCCCCcCCH
Confidence 457777777776544433 345666677777777652 11 111100 0001 13566666666666654
Q ss_pred ccc-ccccCCCCCeEEecCCCCCCc
Q 035579 711 LSS-SIVDLQNLTELCLRDCPKLKY 734 (814)
Q Consensus 711 l~~-~~~~l~~L~~L~l~~c~~l~~ 734 (814)
-.- .+..+++|++|++++|+.+++
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 221 344566666666666665554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00011 Score=68.94 Aligned_cols=118 Identities=7% Similarity=0.041 Sum_probs=70.2
Q ss_pred hhhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccc----cccccCCCCCcceEeeecC
Q 035579 324 HNELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK----LPQSSLSLCSLREIGIYKC 399 (814)
Q Consensus 324 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~ 399 (814)
....+...++|++|++++|..+..-....+...+.. .++|++|+|++|.+... +...+...++|++|+|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~----~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT----NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT----CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh----CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 344566778888888888645554333322222322 27788888888876432 3334555677888888886
Q ss_pred CCCccc------CCCCCCCCCcEEEe--cccCCCCC-----CchhhhcCCCCCccEEEEecCC
Q 035579 400 SSLVSF------PEVALPSKLEKIHI--GACDALKS-----LPEAWMCDTNSSLEILYIEGCR 449 (814)
Q Consensus 400 ~~l~~~------~~~~~~~~L~~L~l--~~~~~l~~-----~~~~~~~~~l~~L~~L~l~~~~ 449 (814)
. ++.- ..+...++|++|++ ++|. ++. +...+ ...++|++|++++|.
T Consensus 104 ~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L--~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 F-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANML--EKNTTLLKFGYHFTQ 162 (185)
T ss_dssp C-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHH--HHCSSCCEEECCCSS
T ss_pred c-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHH--HhCCCcCEEeccCCC
Confidence 4 3331 12344567888888 6666 433 12222 345677788877754
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00022 Score=70.44 Aligned_cols=80 Identities=15% Similarity=0.079 Sum_probs=55.9
Q ss_pred cCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCC--CcceEeeccccccccccc------
Q 035579 539 DNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCA--KLSELRIFQCERLEALPK------ 608 (814)
Q Consensus 539 ~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~--~L~~L~l~~~~~l~~lp~------ 608 (814)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++| .+..+. .+..+. +|++|++++|+....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 567888888888888877 45566667888999999887 445442 233333 888899998876655542
Q ss_pred -cccCCCCcceEE
Q 035579 609 -GLHNLTSLQELT 620 (814)
Q Consensus 609 -~~~~l~~L~~L~ 620 (814)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356677777765
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00022 Score=66.84 Aligned_cols=16 Identities=13% Similarity=-0.147 Sum_probs=10.7
Q ss_pred CCceeEEEecCCcchh
Q 035579 634 PTNLHSLDIRGNMEIW 649 (814)
Q Consensus 634 ~~~L~~L~l~~n~~~~ 649 (814)
.++|++|++++|.+..
T Consensus 150 n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 150 NTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CSSCCEEECCCSSHHH
T ss_pred CCCcCEEeccCCCCCh
Confidence 3667777777776543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0005 Score=67.80 Aligned_cols=79 Identities=18% Similarity=0.055 Sum_probs=47.4
Q ss_pred cccccEEEeeccCCcc--ccccccCCCCCcceEeeecCCCCcccCCCCCCC--CCcEEEecccCCCCCCch------hhh
Q 035579 364 SCRLEYLILSCCEGLV--KLPQSSLSLCSLREIGIYKCSSLVSFPEVALPS--KLEKIHIGACDALKSLPE------AWM 433 (814)
Q Consensus 364 ~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~--~L~~L~l~~~~~l~~~~~------~~~ 433 (814)
+++|+.|+|++|.+.+ .++..+..+++|+.|+|++| .++.+..+..+. +|+.|++++|.....+|. .++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 3778888888887655 34455567788888888774 444444333333 777777777774333331 111
Q ss_pred cCCCCCccEEE
Q 035579 434 CDTNSSLEILY 444 (814)
Q Consensus 434 ~~~l~~L~~L~ 444 (814)
..+++|+.||
T Consensus 248 -~~~P~L~~LD 257 (267)
T 3rw6_A 248 -ERFPKLLRLD 257 (267)
T ss_dssp -HHCTTCCEES
T ss_pred -HHCcccCeEC
Confidence 4456666654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.061 Score=46.40 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=22.5
Q ss_pred CCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCC
Q 035579 694 PASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCP 730 (814)
Q Consensus 694 ~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 730 (814)
+++|++|+|++ |.++.||. .+..+++|+.|+|.+++
T Consensus 30 p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 45666666666 66666665 44566666666666643
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.093 Score=45.26 Aligned_cols=52 Identities=25% Similarity=0.302 Sum_probs=42.7
Q ss_pred eEEeccCCCCc--ccccccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCch
Q 035579 699 DLEIGRFPNLE--RLSSSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCPL 754 (814)
Q Consensus 699 ~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~~ 754 (814)
.++.++ +.++ .+|..+. ++|++|+|++ ++|+.+|...+ +++|++|++.++|.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCC-CCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 567777 7888 8886543 5799999999 68999999776 78999999999873
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=89.96 E-value=0.25 Score=45.75 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=51.2
Q ss_pred hhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccc----cccccCCCCCcceEeeecCC
Q 035579 325 NELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK----LPQSSLSLCSLREIGIYKCS 400 (814)
Q Consensus 325 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~ 400 (814)
...+..-+.|++|+|+++..+..-....+...+.. -+.|+.|+|++|.+... +...+..-+.|++|+|++|.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~----N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN----SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT----CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhh----CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 34445567788888876544543322222222222 26788888888876432 22334445677888887753
Q ss_pred CCcccC------CCCCCCCCcEEEeccc
Q 035579 401 SLVSFP------EVALPSKLEKIHIGAC 422 (814)
Q Consensus 401 ~l~~~~------~~~~~~~L~~L~l~~~ 422 (814)
++.-. .+..-+.|+.|++++|
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33211 1333456777777654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=89.56 E-value=0.14 Score=47.40 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=18.4
Q ss_pred hHhhcCCCCcceEeecccCCccc----ccccCCCCCCccEEEecCC
Q 035579 535 AERLDNNTSLETIGINFCENLKI----LPSGLHNLRQLREITIQRC 576 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~~ 576 (814)
...+..-+.|+.|+|++|.+... +...+..-+.|++|+|++|
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 33344444555555555554421 1222223344555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 814 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.001 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 0.001
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 1/127 (0%)
Query: 520 LESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNL 579
L +L + + LE + ++ LK LP + Q + +
Sbjct: 57 LHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKV 115
Query: 580 VSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNLHS 639
GL + EL + + L + I + GLP +L
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE 175
Query: 640 LDIRGNM 646
L + GN
Sbjct: 176 LHLDGNK 182
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 814 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.86 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.86 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.78 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.76 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.75 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.74 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.69 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.69 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.68 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.65 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.62 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.61 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.49 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.49 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.45 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.44 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.44 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.3 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.3 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.17 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.11 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.06 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.06 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.01 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.0 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.0 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.88 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.78 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.69 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.67 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.62 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.54 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.47 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.24 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.3 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.29 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.89 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.18 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 94.35 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.86 E-value=3.4e-20 Score=197.81 Aligned_cols=192 Identities=19% Similarity=0.207 Sum_probs=138.7
Q ss_pred HhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCC
Q 035579 536 ERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTS 615 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 615 (814)
.....+++++.+++++|.+.+..| ...+++|++|++++| .++.++ .+..+++|+.+++++|. +..++ .+..+++
T Consensus 191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~ 264 (384)
T d2omza2 191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLA-PLSGLTK 264 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTT
T ss_pred cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCC-ccccccc
Confidence 346677778888888877766543 455677888888887 455554 45667788888888873 45554 3667788
Q ss_pred cceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCC
Q 035579 616 LQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLP 694 (814)
Q Consensus 616 L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~ 694 (814)
|+.|++++ .+..++....++.++.+++..|..... ..+..+++++.|++++| .+..++. . ..+
T Consensus 265 L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~------~~~~~~~~l~~L~ls~n--~l~~l~~-l-------~~l 328 (384)
T d2omza2 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFN--NISDISP-V-------SSL 328 (384)
T ss_dssp CSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC------GGGGGCTTCSEEECCSS--CCSCCGG-G-------GGC
T ss_pred CCEeeccCcccCCCCccccccccccccccccccccc------cccchhcccCeEECCCC--CCCCCcc-c-------ccC
Confidence 88888877 666666656677888888888876543 34667888888888886 5666553 2 357
Q ss_pred CCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCC
Q 035579 695 ASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSC 752 (814)
Q Consensus 695 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c 752 (814)
++|++|++++ +.++.++ .+..+++|++|++++| +++.+++-.-+++|++|+++++
T Consensus 329 ~~L~~L~L~~-n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 329 TKLQRLFFAN-NKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp TTCCEEECCS-SCCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred CCCCEEECCC-CCCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence 8899999988 4788877 6788899999999874 7888765333678888888774
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.86 E-value=2.6e-20 Score=198.65 Aligned_cols=340 Identities=18% Similarity=0.176 Sum_probs=218.8
Q ss_pred hcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCC
Q 035579 329 QDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEV 408 (814)
Q Consensus 329 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 408 (814)
..+.+|++|+++++ .++.+.. ++.+ ++|++|++++|.+. .++ .+.++++|++|++++| .++.++++
T Consensus 41 ~~l~~l~~L~l~~~-~I~~l~g------l~~L----~nL~~L~Ls~N~l~-~l~-~l~~L~~L~~L~L~~n-~i~~i~~l 106 (384)
T d2omza2 41 TDLDQVTTLQADRL-GIKSIDG------VEYL----NNLTQINFSNNQLT-DIT-PLKNLTKLVDILMNNN-QIADITPL 106 (384)
T ss_dssp HHHTTCCEEECCSS-CCCCCTT------GGGC----TTCCEEECCSSCCC-CCG-GGTTCTTCCEEECCSS-CCCCCGGG
T ss_pred HHhCCCCEEECCCC-CCCCccc------cccC----CCCCEEeCcCCcCC-CCc-cccCCccccccccccc-cccccccc
Confidence 34567777777775 4555421 3333 77788888877653 344 2777777888888775 45556666
Q ss_pred CCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeecc-ccCCcccccccCCCCCC
Q 035579 409 ALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHG-CYNIKTLTVEEGIPSSS 487 (814)
Q Consensus 409 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~~ 487 (814)
+.+++|+.|+++++. ...++.. .....+.......+. +............+...... ..... .
T Consensus 107 ~~l~~L~~L~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~------~----- 170 (384)
T d2omza2 107 ANLTNLTGLTLFNNQ-ITDIDPL---KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLK------P----- 170 (384)
T ss_dssp TTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCG------G-----
T ss_pred ccccccccccccccc-ccccccc---ccccccccccccccc-ccccccccccccccccccccccchhh------h-----
Confidence 777778888777776 4444443 334555555555432 11111111111111110000 00000 0
Q ss_pred CCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCC
Q 035579 488 SSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQ 567 (814)
Q Consensus 488 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 567 (814)
..............+.. .. .......++++.+++++|......+ ...+++|++|++++|.+... +.+..+++
T Consensus 171 --~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~ 242 (384)
T d2omza2 171 --LANLTTLERLDISSNKV-SD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTN 242 (384)
T ss_dssp --GTTCTTCCEEECCSSCC-CC-CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred --hcccccccccccccccc-cc-ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccc
Confidence 00001111122111111 11 2223344578888888876655444 56778999999999887653 35778899
Q ss_pred ccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCc
Q 035579 568 LREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNM 646 (814)
Q Consensus 568 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~ 646 (814)
|+.+++++|. +..++ .+..+++|++|++++| .+..++ .+..++.++.+++.. .+..++....+++++.|++++|.
T Consensus 243 L~~L~l~~n~-l~~~~-~~~~~~~L~~L~l~~~-~l~~~~-~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~ 318 (384)
T d2omza2 243 LTDLDLANNQ-ISNLA-PLSGLTKLTELKLGAN-QISNIS-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318 (384)
T ss_dssp CSEEECCSSC-CCCCG-GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred cchhccccCc-cCCCC-cccccccCCEeeccCc-ccCCCC-ccccccccccccccccccccccccchhcccCeEECCCCC
Confidence 9999999984 55554 3666789999999888 455554 367888999999988 77776666678999999999998
Q ss_pred chhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEe
Q 035579 647 EIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCL 726 (814)
Q Consensus 647 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 726 (814)
+.... .+..+++|++|++++| .+..++. . ..+++|++|++++ |+++.+++ +.++++|+.|+|
T Consensus 319 l~~l~------~l~~l~~L~~L~L~~n--~l~~l~~-l-------~~l~~L~~L~l~~-N~l~~l~~-l~~l~~L~~L~L 380 (384)
T d2omza2 319 ISDIS------PVSSLTKLQRLFFANN--KVSDVSS-L-------ANLTNINWLSAGH-NQISDLTP-LANLTRITQLGL 380 (384)
T ss_dssp CSCCG------GGGGCTTCCEEECCSS--CCCCCGG-G-------GGCTTCCEEECCS-SCCCBCGG-GTTCTTCSEEEC
T ss_pred CCCCc------ccccCCCCCEEECCCC--CCCCChh-H-------cCCCCCCEEECCC-CcCCCChh-hccCCCCCEeeC
Confidence 76542 3678999999999997 6766663 3 4689999999998 68998884 889999999999
Q ss_pred cC
Q 035579 727 RD 728 (814)
Q Consensus 727 ~~ 728 (814)
++
T Consensus 381 ~~ 382 (384)
T d2omza2 381 ND 382 (384)
T ss_dssp CC
T ss_pred CC
Confidence 87
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.78 E-value=5.2e-19 Score=182.29 Aligned_cols=266 Identities=14% Similarity=0.126 Sum_probs=161.3
Q ss_pred CCCceeeccCCccccccCCCCCCCCCcceEEEcCCCCcchhcc-chhhhhhcCCCCCeEEEecCCCcc-cchhhHHHHHH
Q 035579 280 SQNSVVCRDTSNQVFLAGPLKPRLPKLEELKINDMKEQTYMWK-SHNELLQDICSLRRLTIRSCPKLQ-SLVAEEEKDQQ 357 (814)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~ 357 (814)
.|.++.|..... ...++.| +++++..... ..+..++.+++|++|++++|+.+. .+|.. +
T Consensus 37 ~w~gv~C~~~~~-----------~~~v~~L---~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-----i 97 (313)
T d1ogqa_ 37 TWLGVLCDTDTQ-----------TYRVNNL---DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-----I 97 (313)
T ss_dssp CSTTEEECCSSS-----------CCCEEEE---EEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-----G
T ss_pred cCCCeEEeCCCC-----------cEEEEEE---ECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-----c
Confidence 599999965321 1233333 4444333222 234556778888888887765555 45443 4
Q ss_pred HHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccC-CCCCCCCCcEEEecccCCCCCCchhhhcCC
Q 035579 358 QQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFP-EVALPSKLEKIHIGACDALKSLPEAWMCDT 436 (814)
Q Consensus 358 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 436 (814)
..+ ++|++|+|++|.+.+..+..+..+.+|+.+++++|.....+| .+..+++++.+++++|...+.+|..+ ..
T Consensus 98 ~~L----~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~ 171 (313)
T d1ogqa_ 98 AKL----TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GS 171 (313)
T ss_dssp GGC----TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GC
T ss_pred ccc----cccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccc--cc
Confidence 444 778888888887777667677777778888887766555554 35567777777777777555666665 44
Q ss_pred CCCc-cEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCC
Q 035579 437 NSSL-EILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNE 515 (814)
Q Consensus 437 l~~L-~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 515 (814)
+..+ +.+++++|. ++..... .+.. .....+++.++.....+.....
T Consensus 172 l~~l~~~l~~~~n~-l~~~~~~----------------------------~~~~----l~~~~l~l~~~~~~~~~~~~~~ 218 (313)
T d1ogqa_ 172 FSKLFTSMTISRNR-LTGKIPP----------------------------TFAN----LNLAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp CCTTCCEEECCSSE-EEEECCG----------------------------GGGG----CCCSEEECCSSEEEECCGGGCC
T ss_pred cccccccccccccc-ccccccc----------------------------cccc----cccccccccccccccccccccc
Confidence 5444 666666643 2211110 0000 0122333333322222222233
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceE
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSEL 595 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 595 (814)
..++++.+++.+|.....++ .++.+++|+.|++++|++.+.+|..++++++|++|++++|...+.+|. +..+++|+.+
T Consensus 219 ~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l 296 (313)
T d1ogqa_ 219 SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS 296 (313)
T ss_dssp TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGG
T ss_pred cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHH
Confidence 44567777777766554443 577778888888888888888888888888888888888754446763 5667788888
Q ss_pred eecccccccc
Q 035579 596 RIFQCERLEA 605 (814)
Q Consensus 596 ~l~~~~~l~~ 605 (814)
++++|+.+..
T Consensus 297 ~l~~N~~l~g 306 (313)
T d1ogqa_ 297 AYANNKCLCG 306 (313)
T ss_dssp GTCSSSEEES
T ss_pred HhCCCccccC
Confidence 8888765543
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.76 E-value=1e-18 Score=180.10 Aligned_cols=246 Identities=15% Similarity=0.085 Sum_probs=186.9
Q ss_pred CccEEeecCCCCcc--cccccCCCcccccEEEEecc-CCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEE
Q 035579 495 ILEHLSIVGCPSLT--CIFSKNELPATLESLSVYKC-SKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREI 571 (814)
Q Consensus 495 ~L~~L~l~~~~~l~--~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 571 (814)
+++.|+++++..-+ .+.+....+++|++|++++| ...+.+|..++++++|++|++++|.+.+..+..+..+.+|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 35666666653332 12334455678999999874 4556789999999999999999999998888888889999999
Q ss_pred EecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCc-ceEEecC-ccCcccc--CCCCCceeEEEecCCcc
Q 035579 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSL-QELTIGG-ALPSLEE--DGLPTNLHSLDIRGNME 647 (814)
Q Consensus 572 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L-~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~ 647 (814)
++++|.....+|..+..++.|+.+++++|.....+|..+..+..+ +.+++++ .+..... ... .....+++..+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~-l~~~~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CCCSEEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 999987777788888889999999999997777888888888776 7777776 3332211 222 3445688888877
Q ss_pred hhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCc-ccccccccCCCCCeEEe
Q 035579 648 IWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLE-RLSSSIVDLQNLTELCL 726 (814)
Q Consensus 648 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l 726 (814)
....+ ..+..+++++.+++++| .+...+... ..+++|+.|++++ |+++ .+|.+++++++|++|++
T Consensus 210 ~~~~~----~~~~~~~~l~~l~~~~~--~l~~~~~~~-------~~~~~L~~L~Ls~-N~l~g~iP~~l~~L~~L~~L~L 275 (313)
T d1ogqa_ 210 EGDAS----VLFGSDKNTQKIHLAKN--SLAFDLGKV-------GLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp EECCG----GGCCTTSCCSEEECCSS--EECCBGGGC-------CCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEEC
T ss_pred ccccc----ccccccccccccccccc--ccccccccc-------ccccccccccCcc-CeecccCChHHhCCCCCCEEEC
Confidence 66554 56788899999999986 444333333 4679999999999 6777 89999999999999999
Q ss_pred cCCCCCC-ccCCCCCcCCccEEeecCCchhh
Q 035579 727 RDCPKLK-YFPEKGLPSSLLRLSILSCPLIE 756 (814)
Q Consensus 727 ~~c~~l~-~lp~~~l~~~L~~L~i~~c~~l~ 756 (814)
++| +++ .+|..+-+++|+.+++.+++.+.
T Consensus 276 s~N-~l~g~iP~~~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 276 SFN-NLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CSS-EEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred cCC-cccccCCCcccCCCCCHHHhCCCcccc
Confidence 995 676 78875557899999999987543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.75 E-value=8.2e-17 Score=164.92 Aligned_cols=228 Identities=16% Similarity=0.194 Sum_probs=118.9
Q ss_pred CCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCC
Q 035579 332 CSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP 411 (814)
Q Consensus 332 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 411 (814)
+++++|+++++ .++.+++.. +..+ ++|++|++++|.+....|..|.++++|++|++++| .++.+|. ...
T Consensus 31 ~~l~~L~Ls~N-~i~~l~~~~----f~~l----~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~-~~~ 99 (305)
T d1xkua_ 31 PDTALLDLQNN-KITEIKDGD----FKNL----KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE-KMP 99 (305)
T ss_dssp TTCCEEECCSS-CCCCBCTTT----TTTC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS-SCC
T ss_pred CCCCEEECcCC-cCCCcChhH----hhcc----ccccccccccccccccchhhhhCCCccCEecccCC-ccCcCcc-chh
Confidence 45666666664 455555432 2222 55666666666555444555555666666666554 3444442 233
Q ss_pred CCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCC
Q 035579 412 SKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRY 491 (814)
Q Consensus 412 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 491 (814)
+.++.|++.+|. +..++...+ ........++...+....... ....+.
T Consensus 100 ~~l~~L~~~~n~-l~~l~~~~~-~~~~~~~~l~~~~n~~~~~~~------------------------------~~~~~~ 147 (305)
T d1xkua_ 100 KTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTNPLKSSGI------------------------------ENGAFQ 147 (305)
T ss_dssp TTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSSCCCGGGB------------------------------CTTGGG
T ss_pred hhhhhhhccccc-hhhhhhhhh-hccccccccccccccccccCC------------------------------Cccccc
Confidence 455556555555 333333322 344444444444432111100 000111
Q ss_pred CCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEE
Q 035579 492 TSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREI 571 (814)
Q Consensus 492 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 571 (814)
.+++|+.++++++... . ++ ...+++++.|++++|......+..+..++.+++|++++|.+.+..+..+.++++|++|
T Consensus 148 ~l~~L~~l~l~~n~l~-~-l~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L 224 (305)
T d1xkua_ 148 GMKKLSYIRIADTNIT-T-IP-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 224 (305)
T ss_dssp GCTTCCEEECCSSCCC-S-CC-SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred cccccCccccccCCcc-c-cC-cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceee
Confidence 1234555555444321 1 11 1234566667766666666666666666777777777766666666666666677777
Q ss_pred EecCCCCceecCCCCCCCCCcceEeecccccccccc
Q 035579 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALP 607 (814)
Q Consensus 572 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp 607 (814)
++++| .++.+|.++..+++|++|++++| +++.++
T Consensus 225 ~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~ 258 (305)
T d1xkua_ 225 HLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIG 258 (305)
T ss_dssp ECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred ecccc-cccccccccccccCCCEEECCCC-ccCccC
Confidence 77666 45566666666666777776666 455554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.74 E-value=1.8e-16 Score=162.43 Aligned_cols=263 Identities=15% Similarity=0.182 Sum_probs=131.4
Q ss_pred cccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--CCCCCCCcEEEecccCCCCCC-chhhhcCCCCCccE
Q 035579 366 RLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPSKLEKIHIGACDALKSL-PEAWMCDTNSSLEI 442 (814)
Q Consensus 366 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~L~~ 442 (814)
..+.++=++.. +..+|..+ .+++++|+|++| .++.+++ +..+++|++|++++|. +..+ |..+ ..+++|++
T Consensus 11 ~~~~~~C~~~~-L~~lP~~l--~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f--~~l~~L~~ 83 (305)
T d1xkua_ 11 HLRVVQCSDLG-LEKVPKDL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF--APLVKLER 83 (305)
T ss_dssp ETTEEECTTSC-CCSCCCSC--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT--TTCTTCCE
T ss_pred cCCEEEecCCC-CCccCCCC--CCCCCEEECcCC-cCCCcChhHhhcccccccccccccc-ccccchhhh--hCCCccCE
Confidence 34555444433 34566554 256777777774 4555553 4456777777777776 3344 3333 66777777
Q ss_pred EEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccE
Q 035579 443 LYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLES 522 (814)
Q Consensus 443 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 522 (814)
|++++|+ ++.++.. ... .++.
T Consensus 84 L~l~~n~-l~~l~~~-~~~---------------------------------------------------------~l~~ 104 (305)
T d1xkua_ 84 LYLSKNQ-LKELPEK-MPK---------------------------------------------------------TLQE 104 (305)
T ss_dssp EECCSSC-CSBCCSS-CCT---------------------------------------------------------TCCE
T ss_pred ecccCCc-cCcCccc-hhh---------------------------------------------------------hhhh
Confidence 7777653 3333321 111 2333
Q ss_pred EEEeccCCcchhhHhhcCCCCcceEeecccCCcc--cccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 523 LSVYKCSKLESIAERLDNNTSLETIGINFCENLK--ILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 523 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
|.+.++......+..+.....+..++...|.... ..+..+..+++|+.+++++| .+..+|..+ +++|++|++++|
T Consensus 105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~--~~~L~~L~l~~n 181 (305)
T d1xkua_ 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGN 181 (305)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTS
T ss_pred hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCccc--CCccCEEECCCC
Confidence 3333333333233334445555555555543322 23344556667777777766 444455433 356777777777
Q ss_pred cccccccccccCCCCcceEEecC-ccCccccC--CCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCC
Q 035579 601 ERLEALPKGLHNLTSLQELTIGG-ALPSLEED--GLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDM 677 (814)
Q Consensus 601 ~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l 677 (814)
......+..+.+++.++.|++++ .+..++.. ..+++|++|++++|.+... + ..+..+++|++|++++| .+
T Consensus 182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p----~~l~~l~~L~~L~Ls~N--~i 254 (305)
T d1xkua_ 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-P----GGLADHKYIQVVYLHNN--NI 254 (305)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-C----TTTTTCSSCCEEECCSS--CC
T ss_pred cCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-c----cccccccCCCEEECCCC--cc
Confidence 55555555666666666666555 44443321 1234445555555443321 1 23445555555555554 44
Q ss_pred ccCCccccccCCCCCCCCCcceEEecc
Q 035579 678 VSFPPEDKRLGTALPLPASLTDLEIGR 704 (814)
Q Consensus 678 ~~i~~~~~~~~~~~~~~~~L~~L~l~~ 704 (814)
..++...+........+++|+.|++++
T Consensus 255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~ 281 (305)
T d1xkua_ 255 SAIGSNDFCPPGYNTKKASYSGVSLFS 281 (305)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred CccChhhccCcchhcccCCCCEEECCC
Confidence 444443332222222334444444444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.69 E-value=3.1e-15 Score=156.67 Aligned_cols=314 Identities=25% Similarity=0.271 Sum_probs=167.5
Q ss_pred CCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCC
Q 035579 332 CSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALP 411 (814)
Q Consensus 332 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~ 411 (814)
.++++|+++++ .++.+|+. +++|++|++++|.+ ..+|.. +.+|++|++++| .++.++. .+
T Consensus 38 ~~l~~LdLs~~-~L~~lp~~------------~~~L~~L~Ls~N~l-~~lp~~---~~~L~~L~l~~n-~l~~l~~--lp 97 (353)
T d1jl5a_ 38 RQAHELELNNL-GLSSLPEL------------PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNN-NLKALSD--LP 97 (353)
T ss_dssp HTCSEEECTTS-CCSCCCSC------------CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSS-CCSCCCS--CC
T ss_pred cCCCEEEeCCC-CCCCCCCC------------CCCCCEEECCCCCC-cccccc---hhhhhhhhhhhc-ccchhhh--hc
Confidence 35777777774 56666542 26777777777764 355643 346777777774 4455543 23
Q ss_pred CCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCC
Q 035579 412 SKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRY 491 (814)
Q Consensus 412 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 491 (814)
+.|++|++++|. +..+|.. +.+++|++|+++++.. ...+ .....+..+.+..+....
T Consensus 98 ~~L~~L~L~~n~-l~~lp~~---~~l~~L~~L~l~~~~~-~~~~--~~~~~l~~l~~~~~~~~~---------------- 154 (353)
T d1jl5a_ 98 PLLEYLGVSNNQ-LEKLPEL---QNSSFLKIIDVDNNSL-KKLP--DLPPSLEFIAAGNNQLEE---------------- 154 (353)
T ss_dssp TTCCEEECCSSC-CSSCCCC---TTCTTCCEEECCSSCC-SCCC--CCCTTCCEEECCSSCCSS----------------
T ss_pred cccccccccccc-cccccch---hhhccceeeccccccc-cccc--cccccccchhhccccccc----------------
Confidence 567777777776 6666653 5677777777776542 2211 122234444333321111
Q ss_pred CCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEE
Q 035579 492 TSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREI 571 (814)
Q Consensus 492 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 571 (814)
.......+.++.+.+.++..... + ......+.+...++.. ..+ ..+..++.|+.+
T Consensus 155 -------------------~~~l~~l~~l~~L~l~~n~~~~~-~---~~~~~~~~l~~~~~~~-~~~-~~~~~l~~L~~l 209 (353)
T d1jl5a_ 155 -------------------LPELQNLPFLTAIYADNNSLKKL-P---DLPLSLESIVAGNNIL-EEL-PELQNLPFLTTI 209 (353)
T ss_dssp -------------------CCCCTTCTTCCEEECCSSCCSSC-C---CCCTTCCEEECCSSCC-SSC-CCCTTCTTCCEE
T ss_pred -------------------cccccccccceeccccccccccc-c---cccccccccccccccc-ccc-cccccccccccc
Confidence 01111222344444444332211 1 0111222333332222 122 234556667777
Q ss_pred EecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhh
Q 035579 572 TIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWK 650 (814)
Q Consensus 572 ~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~ 650 (814)
++++| ....++.. ..++..+.+..+. ....+. ..+.+...++.. ....+.. ........++..+....
T Consensus 210 ~l~~n-~~~~~~~~---~~~l~~~~~~~~~-~~~~~~---~~~~l~~~~~~~~~~~~l~~--l~~~~~~~~~~~~~~~~- 278 (353)
T d1jl5a_ 210 YADNN-LLKTLPDL---PPSLEALNVRDNY-LTDLPE---LPQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRS- 278 (353)
T ss_dssp ECCSS-CCSSCCSC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSEESC--CCTTCCEEECCSSCCSE-
T ss_pred ccccc-cccccccc---ccccccccccccc-cccccc---cccccccccccccccccccc--ccchhcccccccCcccc-
Confidence 77665 23333322 2355666665552 222222 223444444443 2222211 12344455555554322
Q ss_pred hhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCC
Q 035579 651 SMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCP 730 (814)
Q Consensus 651 ~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 730 (814)
....+++|++|++++| .+..+|.. +++|+.|++++ +.++++|. .+++|++|++++|
T Consensus 279 -------~~~~~~~L~~L~Ls~N--~l~~lp~~----------~~~L~~L~L~~-N~L~~l~~---~~~~L~~L~L~~N- 334 (353)
T d1jl5a_ 279 -------LCDLPPSLEELNVSNN--KLIELPAL----------PPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYN- 334 (353)
T ss_dssp -------ECCCCTTCCEEECCSS--CCSCCCCC----------CTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-
T ss_pred -------ccccCCCCCEEECCCC--ccCccccc----------cCCCCEEECCC-CcCCcccc---ccCCCCEEECcCC-
Confidence 1234678889999887 67778753 47889999988 67888884 3467899999886
Q ss_pred CCCccCCCCCcCCccEEeec
Q 035579 731 KLKYFPEKGLPSSLLRLSIL 750 (814)
Q Consensus 731 ~l~~lp~~~l~~~L~~L~i~ 750 (814)
.++++|. ++.+|+.|.+.
T Consensus 335 ~L~~lp~--~~~~L~~L~~~ 352 (353)
T d1jl5a_ 335 PLREFPD--IPESVEDLRMN 352 (353)
T ss_dssp CCSSCCC--CCTTCCEEECC
T ss_pred cCCCCCc--cccccCeeECc
Confidence 4888886 67788888764
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.7e-16 Score=158.63 Aligned_cols=198 Identities=16% Similarity=0.102 Sum_probs=140.6
Q ss_pred CCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCC
Q 035579 331 ICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVAL 410 (814)
Q Consensus 331 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 410 (814)
...+.+.+.++ .+++.+|.. +|+++++|+|++|.+.+..+..|..+++|++|+|++| .++.++..+.
T Consensus 9 ~~~~~~v~C~~-~~L~~iP~~-----------lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~ 75 (266)
T d1p9ag_ 9 VASHLEVNCDK-RNLTALPPD-----------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGT 75 (266)
T ss_dssp STTCCEEECTT-SCCSSCCSC-----------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSC
T ss_pred cCCCeEEEccC-CCCCeeCcC-----------cCcCCCEEECcCCcCCCcCHHHhhccccccccccccc-cccccccccc
Confidence 34444555555 356666643 2368999999999876555567889999999999996 6778887788
Q ss_pred CCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCC
Q 035579 411 PSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSR 490 (814)
Q Consensus 411 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 490 (814)
+++|++|++++|+ +...+..+ ..+++|+.|+++++.. ..++..
T Consensus 76 l~~L~~L~Ls~N~-l~~~~~~~--~~l~~L~~L~l~~~~~-~~~~~~--------------------------------- 118 (266)
T d1p9ag_ 76 LPVLGTLDLSHNQ-LQSLPLLG--QTLPALTVLDVSFNRL-TSLPLG--------------------------------- 118 (266)
T ss_dssp CTTCCEEECCSSC-CSSCCCCT--TTCTTCCEEECCSSCC-CCCCSS---------------------------------
T ss_pred ccccccccccccc-cccccccc--cccccccccccccccc-ceeecc---------------------------------
Confidence 9999999999987 66666655 7788888888887641 111100
Q ss_pred CCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccE
Q 035579 491 YTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLRE 570 (814)
Q Consensus 491 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 570 (814)
......+++.|++++|......+..+..+++++.+++++|.+.+..+..+..+++|++
T Consensus 119 ----------------------~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~ 176 (266)
T d1p9ag_ 119 ----------------------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (266)
T ss_dssp ----------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred ----------------------ccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccce
Confidence 0011124555566655544444555677788888888888888777777888888888
Q ss_pred EEecCCCCceecCCCCCCCCCcceEeecccc
Q 035579 571 ITIQRCGNLVSFPEGGLPCAKLSELRIFQCE 601 (814)
Q Consensus 571 L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 601 (814)
|++++| .++.+|.++..+++|+.|++++|+
T Consensus 177 L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 177 LLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp EECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred eecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence 888887 567888877788888888888875
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.1e-16 Score=157.93 Aligned_cols=181 Identities=19% Similarity=0.248 Sum_probs=106.9
Q ss_pred chhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccccccccccc
Q 035579 532 ESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLH 611 (814)
Q Consensus 532 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 611 (814)
+.+|+.+. +++++|+|++|.+.+..+..|.++++|++|++++| .++.++. +..+++|++|++++| .++..+..+.
T Consensus 23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~ 97 (266)
T d1p9ag_ 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQ 97 (266)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTT
T ss_pred CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-ccccccccccccccc-cccccccccc
Confidence 34554432 46777777777777666667777788888888877 5566653 456777888888777 4555566666
Q ss_pred CCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCC
Q 035579 612 NLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTA 690 (814)
Q Consensus 612 ~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~ 690 (814)
.+++|+.|++++ .+..++. ..+..+.++++|++++| .+..+|...+
T Consensus 98 ~l~~L~~L~l~~~~~~~~~~--------------------------~~~~~l~~l~~L~l~~n--~l~~l~~~~~----- 144 (266)
T d1p9ag_ 98 TLPALTVLDVSFNRLTSLPL--------------------------GALRGLGELQELYLKGN--ELKTLPPGLL----- 144 (266)
T ss_dssp TCTTCCEEECCSSCCCCCCS--------------------------STTTTCTTCCEEECTTS--CCCCCCTTTT-----
T ss_pred cccccccccccccccceeec--------------------------ccccccccccccccccc--ccceeccccc-----
Confidence 666666666655 3333221 23344555555555554 4445554432
Q ss_pred CCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCc
Q 035579 691 LPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCP 753 (814)
Q Consensus 691 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~ 753 (814)
..+++|+.+++++ ++++.++. .+..+++|++|++++ ++++++|.+.+ .++|+.|+++++|
T Consensus 145 -~~l~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 145 -TPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp -TTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred -cccccchhccccc-ccccccCccccccccccceeeccc-CCCcccChhHCCCCCCCEEEecCCC
Confidence 3455566666666 45555554 455566666666666 34666665433 5566666666554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1e-15 Score=154.67 Aligned_cols=196 Identities=20% Similarity=0.202 Sum_probs=106.0
Q ss_pred CcceEeecccCCcccccccCCCCCCccEEEecCCCCceecC-CCCCCCCCcceEeeccccccccc-cccccCCCCcceEE
Q 035579 543 SLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFP-EGGLPCAKLSELRIFQCERLEAL-PKGLHNLTSLQELT 620 (814)
Q Consensus 543 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~ 620 (814)
++++|+|++|++.+..+..+.++++|++|++++|. +..++ ..+..++.++.++...+..++.+ |..+.++++|+.|+
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 34445555544444333444555555555555442 22222 22333444444444443344333 33444555555555
Q ss_pred ecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCc
Q 035579 621 IGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASL 697 (814)
Q Consensus 621 l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L 697 (814)
+++ .+..++. ....++|+.+++++|.+..... ..|..+++|++|++++| .+..++...+ ..+++|
T Consensus 112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~----~~f~~~~~L~~L~l~~N--~l~~l~~~~f------~~l~~L 179 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGN--RISSVPERAF------RGLHSL 179 (284)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSS--CCCEECTTTT------TTCTTC
T ss_pred cCCcccccccccccchhcccchhhhccccccccCh----hHhccccchhhcccccC--cccccchhhh------cccccc
Confidence 554 3322221 2334566666666666544332 45666677777777776 5666665542 456777
Q ss_pred ceEEeccCCCCcccc-cccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 698 TDLEIGRFPNLERLS-SSIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 698 ~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
+.+++++ +++..++ ..+..+++|++|++++ +++..++...+ .++|++|+++++|
T Consensus 180 ~~l~l~~-N~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 180 DRLLLHQ-NRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp CEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred chhhhhh-ccccccChhHhhhhhhcccccccc-cccccccccccccccccCEEEecCCC
Confidence 7777777 4555553 4677777777777777 45666665433 5677777777754
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.7e-15 Score=151.53 Aligned_cols=202 Identities=21% Similarity=0.193 Sum_probs=163.5
Q ss_pred CcccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcce
Q 035579 516 LPATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSE 594 (814)
Q Consensus 516 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~ 594 (814)
+++++++|+|++|...+..+..|.++++|++|++++|.+....+..+..++.++.+....+..++.++. .+..+++|++
T Consensus 30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~ 109 (284)
T d1ozna_ 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (284)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence 445788888888776555556789999999999999999888888888899999998877777777754 6778899999
Q ss_pred EeeccccccccccccccCCCCcceEEecC-ccCcccc--CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEe
Q 035579 595 LRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEE--DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTID 671 (814)
Q Consensus 595 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~ 671 (814)
|++++|......+..+...++|+.+++++ .+..++. ....++|++|++++|.+..... ..|..+++|+.++++
T Consensus 110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~----~~f~~l~~L~~l~l~ 185 (284)
T d1ozna_ 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLH 185 (284)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECC
T ss_pred EecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch----hhhccccccchhhhh
Confidence 99999965444455677889999999999 7777765 3456899999999998766544 678899999999999
Q ss_pred cCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCC
Q 035579 672 GCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCP 730 (814)
Q Consensus 672 ~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 730 (814)
+| .+..++...+ ..+++|++|++++ +.+..++. .+..+++|++|++++++
T Consensus 186 ~N--~l~~i~~~~f------~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 186 QN--RVAHVHPHAF------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp SS--CCCEECTTTT------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hc--cccccChhHh------hhhhhcccccccc-cccccccccccccccccCEEEecCCC
Confidence 97 6666654442 5789999999999 78888876 78899999999999954
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.61 E-value=1.6e-13 Score=143.28 Aligned_cols=298 Identities=24% Similarity=0.256 Sum_probs=189.6
Q ss_pred ccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCCCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEE
Q 035579 365 CRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPEVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILY 444 (814)
Q Consensus 365 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 444 (814)
.++++|+|+++.+ +.+|+. .++|++|++++| .++.+|.. +.+|+.|++++|. +..++.. .+.|++|+
T Consensus 38 ~~l~~LdLs~~~L-~~lp~~---~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~l~~n~-l~~l~~l-----p~~L~~L~ 104 (353)
T d1jl5a_ 38 RQAHELELNNLGL-SSLPEL---PPHLESLVASCN-SLTELPEL--PQSLKSLLVDNNN-LKALSDL-----PPLLEYLG 104 (353)
T ss_dssp HTCSEEECTTSCC-SCCCSC---CTTCSEEECCSS-CCSSCCCC--CTTCCEEECCSSC-CSCCCSC-----CTTCCEEE
T ss_pred cCCCEEEeCCCCC-CCCCCC---CCCCCEEECCCC-CCcccccc--hhhhhhhhhhhcc-cchhhhh-----cccccccc
Confidence 5799999999875 567753 568999999874 67777743 5789999999987 6666532 35688888
Q ss_pred EecCCCCcccccccCcCccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEE
Q 035579 445 IEGCRSLTYIAAVQLPSSLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLS 524 (814)
Q Consensus 445 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 524 (814)
+++|. ++.++.....++|+.+++.++.. . ..+ .....+..+.
T Consensus 105 L~~n~-l~~lp~~~~l~~L~~L~l~~~~~-~------~~~------------------------------~~~~~l~~l~ 146 (353)
T d1jl5a_ 105 VSNNQ-LEKLPELQNSSFLKIIDVDNNSL-K------KLP------------------------------DLPPSLEFIA 146 (353)
T ss_dssp CCSSC-CSSCCCCTTCTTCCEEECCSSCC-S------CCC------------------------------CCCTTCCEEE
T ss_pred ccccc-cccccchhhhccceeeccccccc-c------ccc------------------------------cccccccchh
Confidence 88854 55665555555666666554421 1 011 1122455555
Q ss_pred EeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccc
Q 035579 525 VYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLE 604 (814)
Q Consensus 525 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 604 (814)
+..+.... ...+..++.++.+++.+|....... .....+.+...++ .+..++ ....++.|+.+++++| ...
T Consensus 147 ~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~~----~~~~~~~l~~~~~-~~~~~~-~~~~l~~L~~l~l~~n-~~~ 217 (353)
T d1jl5a_ 147 AGNNQLEE--LPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNN-LLK 217 (353)
T ss_dssp CCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCS
T ss_pred hccccccc--cccccccccceeccccccccccccc----ccccccccccccc-cccccc-cccccccccccccccc-ccc
Confidence 55443322 2336677888888888877654321 1223345555543 444454 3556788899998887 444
Q ss_pred cccccccCCCCcceEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCC-CcccEEEEecCCCCCccCCc
Q 035579 605 ALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRF-SSLRHLTIDGCDDDMVSFPP 682 (814)
Q Consensus 605 ~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~l~~i~~ 682 (814)
.+|. ...++..+.+.. .+...+ ..++.+...++..+.... +..+ ......++..+ .+..++.
T Consensus 218 ~~~~---~~~~l~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~---------l~~l~~~~~~~~~~~~--~~~~~~~ 281 (353)
T d1jl5a_ 218 TLPD---LPPSLEALNVRDNYLTDLP--ELPQSLTFLDVSENIFSG---------LSELPPNLYYLNASSN--EIRSLCD 281 (353)
T ss_dssp SCCS---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSE---------ESCCCTTCCEEECCSS--CCSEECC
T ss_pred cccc---ccccccccccccccccccc--cccccccccccccccccc---------cccccchhcccccccC--ccccccc
Confidence 4443 345566666666 333322 224566666666653322 1222 23344555543 3444432
Q ss_pred cccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeecCCchhh
Q 035579 683 EDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSILSCPLIE 756 (814)
Q Consensus 683 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~l~ 756 (814)
.+++|++|++++ ++++.+|. .+++|++|++++| +++++|. .+++|++|++++|+ ++
T Consensus 282 ----------~~~~L~~L~Ls~-N~l~~lp~---~~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N~-L~ 337 (353)
T d1jl5a_ 282 ----------LPPSLEELNVSN-NKLIELPA---LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LR 337 (353)
T ss_dssp ----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CS
T ss_pred ----------cCCCCCEEECCC-CccCcccc---ccCCCCEEECCCC-cCCcccc--ccCCCCEEECcCCc-CC
Confidence 468999999999 68999995 3689999999985 7999986 67899999999997 54
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=2.3e-14 Score=139.12 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=62.3
Q ss_pred cccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 519 TLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
.+..+.++++......+ +..+++|+.|++++|.+... ..++++++|++|++++| .++.++. +..+++|++|+++
T Consensus 130 ~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls 203 (227)
T d1h6ua2 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLK 203 (227)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECT
T ss_pred chhhhhchhhhhchhhh--hccccccccccccccccccc--hhhcccccceecccCCC-ccCCChh-hcCCCCCCEEECc
Confidence 34444444443332222 55667777777777766543 23677788888888887 5566653 6667788888888
Q ss_pred cccccccccccccCCCCcceEEec
Q 035579 599 QCERLEALPKGLHNLTSLQELTIG 622 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~ 622 (814)
+| .++.++ .++++++|+.|+++
T Consensus 204 ~N-~lt~i~-~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 204 NN-QISDVS-PLANTSNLFIVTLT 225 (227)
T ss_dssp TS-CCCBCG-GGTTCTTCCEEEEE
T ss_pred CC-cCCCCc-ccccCCCCCEEEee
Confidence 87 566665 36777777777775
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=3.3e-14 Score=138.01 Aligned_cols=184 Identities=17% Similarity=0.225 Sum_probs=87.6
Q ss_pred CCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEe
Q 035579 542 TSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTI 621 (814)
Q Consensus 542 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l 621 (814)
.+|+.|++.+|.+... .++..+++|++|++++| .+..++ .+..+++|+++++++| ..+.++ .+..+++|+.+++
T Consensus 41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n-~i~~~~-~l~~l~~l~~l~~~~n-~~~~i~-~l~~l~~L~~l~l 114 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN-QITDLA-PLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (227)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCG-GGTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCc-eeeccc-cccccccccccccccc-cccccc-ccccccccccccc
Confidence 3444444444433321 22344444444444444 222222 1333444444444444 222332 2344444444444
Q ss_pred cC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceE
Q 035579 622 GG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDL 700 (814)
Q Consensus 622 ~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L 700 (814)
++ ....+......+.++.+.++.+..... ..+...++|++|++++| .+..++. . ..+++|++|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l~~n--~~~~~~~-l-------~~l~~L~~L 178 (227)
T d1h6ua2 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNA--QVSDLTP-L-------ANLSKLTTL 178 (227)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSS--CCCCCGG-G-------TTCTTCCEE
T ss_pred ccccccccchhccccchhhhhchhhhhchh------hhhcccccccccccccc--ccccchh-h-------cccccceec
Confidence 44 333332333345555555555544332 22445566666666664 3333222 1 345666666
Q ss_pred EeccCCCCcccccccccCCCCCeEEecCCCCCCccCCCCCcCCccEEeec
Q 035579 701 EIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFPEKGLPSSLLRLSIL 750 (814)
Q Consensus 701 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~ 750 (814)
++++ ++++.++ .+..+++|++|++++| +++.++.-.-+++|++|+++
T Consensus 179 ~Ls~-n~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 179 KADD-NKISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLT 225 (227)
T ss_dssp ECCS-SCCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEE
T ss_pred ccCC-CccCCCh-hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEee
Confidence 6666 4566665 3566667777777665 56666542335666666664
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.49 E-value=5.3e-14 Score=134.37 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=76.9
Q ss_pred CCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEE
Q 035579 541 NTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELT 620 (814)
Q Consensus 541 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 620 (814)
+.+|+.|++++|.+... .++..+++|++|++++| .++.++ .+..+++|++|++++| .++.+| .+..+++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCc-cccCcc-ccccCccccccccccc-cccccc-cccccccccccc
Confidence 34555555555554432 23455556666666655 334443 2344555666666555 344444 344455555555
Q ss_pred ecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcce
Q 035579 621 IGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTD 699 (814)
Q Consensus 621 l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~ 699 (814)
+++ .+..++....++.++.+++++|..... ..+..+++|+++++++| .+..++. . ..+++|++
T Consensus 119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~------~~~~~l~~L~~l~l~~n--~l~~i~~-l-------~~l~~L~~ 182 (210)
T d1h6ta2 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDN--QISDIVP-L-------AGLTKLQN 182 (210)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS--CCCCCGG-G-------TTCTTCCE
T ss_pred ccccccccccccccccccccccccccccccc------ccccccccccccccccc--ccccccc-c-------cCCCCCCE
Confidence 544 333333333344455555555543322 12334455555555554 3333332 1 23455555
Q ss_pred EEeccCCCCcccccccccCCCCCeEEec
Q 035579 700 LEIGRFPNLERLSSSIVDLQNLTELCLR 727 (814)
Q Consensus 700 L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 727 (814)
|++++ +.++.++ .+..+++|++|+++
T Consensus 183 L~Ls~-N~i~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 183 LYLSK-NHISDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp EECCS-SCCCBCG-GGTTCTTCSEEEEE
T ss_pred EECCC-CCCCCCh-hhcCCCCCCEEEcc
Confidence 55555 3455554 34455555555554
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.9e-13 Score=134.15 Aligned_cols=185 Identities=16% Similarity=0.091 Sum_probs=85.7
Q ss_pred ccccEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccc-cccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceE
Q 035579 518 ATLESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKIL-PSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSEL 595 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 595 (814)
+++++|++++|.....-+..|.++++|++|++++|.+...+ +..+..+++++++.+..+..+..++. .+..+++|+++
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 34555555554432222223455555555555555544332 22344455555555444333333332 23444555555
Q ss_pred eeccccccccccccccCCCCcceEEecCccCccccCCC---CCceeEEEecCCcchhhhhhhcccccCCCC-cccEEEEe
Q 035579 596 RIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGL---PTNLHSLDIRGNMEIWKSMIERGRGFHRFS-SLRHLTID 671 (814)
Q Consensus 596 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~-~L~~L~l~ 671 (814)
++++| .+...+.... +..+..+...++....... ..+..++ .++.|+++
T Consensus 109 ~l~~~-----------------------~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~----~~~~~~~~~l~~L~l~ 161 (242)
T d1xwdc1 109 LISNT-----------------------GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER----NSFVGLSFESVILWLN 161 (242)
T ss_dssp EEESC-----------------------CCCSCCCCTTTCBSSCEEEEEESCTTCCEECT----TSSTTSBSSCEEEECC
T ss_pred ccchh-----------------------hhcccccccccccccccccccccccccccccc----cccccccccceeeecc
Confidence 55544 3333222222 2233333333333222211 2333333 55566666
Q ss_pred cCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCC
Q 035579 672 GCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKG 739 (814)
Q Consensus 672 ~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~ 739 (814)
+| .+..++...+ ..+++.++....++.++++|. .+.++++|++|++++ ++++.+|...
T Consensus 162 ~n--~l~~i~~~~~-------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~ 220 (242)
T d1xwdc1 162 KN--GIQEIHNCAF-------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYG 220 (242)
T ss_dssp SS--CCCEECTTTT-------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSSS
T ss_pred cc--cccccccccc-------cchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccCHHH
Confidence 54 5555555442 234555554444466666665 356667777777766 3566666543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=2.5e-13 Score=128.41 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=21.6
Q ss_pred CCCCcceEEeccCCCCcccccccccCCCCCeEEecCCCCCCccC
Q 035579 693 LPASLTDLEIGRFPNLERLSSSIVDLQNLTELCLRDCPKLKYFP 736 (814)
Q Consensus 693 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 736 (814)
.+++|++|++.+ ++++.++ .+.++++|++|++++| ++++++
T Consensus 148 ~~~~L~~L~l~~-n~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~ 188 (199)
T d2omxa2 148 GLTSLQQLNFSS-NQVTDLK-PLANLTTLERLDISSN-KVSDIS 188 (199)
T ss_dssp TCTTCSEEECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCCCG
T ss_pred cccccccccccc-ccccCCc-cccCCCCCCEEECCCC-CCCCCc
Confidence 345555555555 3455554 3455555555555554 455554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.45 E-value=2.2e-13 Score=129.92 Aligned_cols=165 Identities=17% Similarity=0.179 Sum_probs=135.9
Q ss_pred CCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC-ccCccccCCCCCceeEEEe
Q 035579 564 NLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG-ALPSLEEDGLPTNLHSLDI 642 (814)
Q Consensus 564 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~~~~~~~~L~~L~l 642 (814)
.+.+|++|++++| .++.++ ++..+++|++|++++| .++.++ .++.+++|+.|++++ .+..++....+++|+.|++
T Consensus 44 ~L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l 119 (210)
T d1h6ta2 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (210)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred HhcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCc-cccCcc-ccccCcccccccccccccccccccccccccccccc
Confidence 4778999999998 566665 5778999999999999 566676 468899999999999 8888887777899999999
Q ss_pred cCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccccccCCCCC
Q 035579 643 RGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSSIVDLQNLT 722 (814)
Q Consensus 643 ~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~ 722 (814)
++|..... ..+..+++++.+++++| .+...+.. ..+++|+++++++ +.++.++ .+.++++|+
T Consensus 120 ~~~~~~~~------~~l~~l~~l~~l~~~~n--~l~~~~~~--------~~l~~L~~l~l~~-n~l~~i~-~l~~l~~L~ 181 (210)
T d1h6ta2 120 EHNGISDI------NGLVHLPQLESLYLGNN--KITDITVL--------SRLTKLDTLSLED-NQISDIV-PLAGLTKLQ 181 (210)
T ss_dssp TTSCCCCC------GGGGGCTTCCEEECCSS--CCCCCGGG--------GGCTTCSEEECCS-SCCCCCG-GGTTCTTCC
T ss_pred cccccccc------ccccccccccccccccc--cccccccc--------ccccccccccccc-ccccccc-cccCCCCCC
Confidence 99987553 35778899999999987 55544432 3579999999999 6888887 588999999
Q ss_pred eEEecCCCCCCccCCCCCcCCccEEeecC
Q 035579 723 ELCLRDCPKLKYFPEKGLPSSLLRLSILS 751 (814)
Q Consensus 723 ~L~l~~c~~l~~lp~~~l~~~L~~L~i~~ 751 (814)
+|++++| +++++|.-.-+++|++|++++
T Consensus 182 ~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 182 NLYLSKN-HISDLRALAGLKNLDVLELFS 209 (210)
T ss_dssp EEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred EEECCCC-CCCCChhhcCCCCCCEEEccC
Confidence 9999996 799988633478999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.44 E-value=3e-13 Score=127.86 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=128.3
Q ss_pred cCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcce
Q 035579 539 DNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQE 618 (814)
Q Consensus 539 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 618 (814)
..+.++++|++++|.+... .++..+++|++|++++| .+..++. +..+++|++|++++| ....++ .+.++++|+.
T Consensus 37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~ 110 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADIT-PLANLTNLTG 110 (199)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSE
T ss_pred HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccc-cccCccc-ccCCccccccccccc-cccccc-cccccccccc
Confidence 4567899999999887753 45788999999999998 5666664 778899999999998 455565 4788999999
Q ss_pred EEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCc
Q 035579 619 LTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASL 697 (814)
Q Consensus 619 L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L 697 (814)
|++++ ....++....+++|+.|++++|..... ..+..+++|++|++.+| .+..++. . ..+++|
T Consensus 111 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~l~~~~~L~~L~l~~n--~l~~l~~-l-------~~l~~L 174 (199)
T d2omxa2 111 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------SALSGLTSLQQLNFSSN--QVTDLKP-L-------ANLTTL 174 (199)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSS--CCCCCGG-G-------TTCTTC
T ss_pred ccccccccccccccchhhhhHHhhhhhhhhccc------ccccccccccccccccc--cccCCcc-c-------cCCCCC
Confidence 99988 555555566678999999999976443 34778899999999987 6666654 2 468999
Q ss_pred ceEEeccCCCCcccccccccCCCCCeE
Q 035579 698 TDLEIGRFPNLERLSSSIVDLQNLTEL 724 (814)
Q Consensus 698 ~~L~l~~~~~l~~l~~~~~~l~~L~~L 724 (814)
++|++++ ++++.++ .+.++++|+.|
T Consensus 175 ~~L~ls~-N~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 175 ERLDISS-NKVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp CEEECCS-SCCCCCG-GGGGCTTCSEE
T ss_pred CEEECCC-CCCCCCc-cccCCCCCCcC
Confidence 9999999 5788887 57788888876
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.1e-12 Score=128.75 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=73.3
Q ss_pred CeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccccccccCCCCCcceEeeecCCCCcccCC--CCCCC
Q 035579 335 RRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVKLPQSSLSLCSLREIGIYKCSSLVSFPE--VALPS 412 (814)
Q Consensus 335 ~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~ 412 (814)
+.++.++ .+++.+|.. +|+++++|++++|.+....+..|.++++|++|++++|.....++. +..++
T Consensus 11 ~~i~c~~-~~l~~iP~~-----------l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~ 78 (242)
T d1xwdc1 11 RVFLCQE-SKVTEIPSD-----------LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78 (242)
T ss_dssp SEEEEES-CSCSSCCSC-----------SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT
T ss_pred CEEEEeC-CCCCCcCCC-----------CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc
Confidence 3455555 345666543 236788888888876433334577788888888888766555543 34477
Q ss_pred CCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccccCcCccceee
Q 035579 413 KLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKNLQ 467 (814)
Q Consensus 413 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 467 (814)
+++++.+..+..+...+...+ ..+++|++++++++. ++..+....+.+++.+.
T Consensus 79 ~l~~l~~~~~n~l~~~~~~~~-~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~ 131 (242)
T d1xwdc1 79 KLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVL 131 (242)
T ss_dssp TCCEEEEECCTTCCEECTTSE-ECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEE
T ss_pred ccccccccccccccccccccc-cccccccccccchhh-hcccccccccccccccc
Confidence 788887776554655554443 677888888888753 44444444444444443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.2e-13 Score=134.62 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=62.0
Q ss_pred ccccEEEEeccCCcch-hhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceec--CCCCCCCCCcce
Q 035579 518 ATLESLSVYKCSKLES-IAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSF--PEGGLPCAKLSE 594 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~ 594 (814)
.+|++|++++|..... +...+..+++|++|++++|.+....+..+..+++|++|++++|..++.. ......+++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 3677888877765433 4566788888888888888777666667778888888888888665532 112345678888
Q ss_pred Eeeccccccc
Q 035579 595 LRIFQCERLE 604 (814)
Q Consensus 595 L~l~~~~~l~ 604 (814)
|++++|..+.
T Consensus 126 L~ls~c~~~~ 135 (284)
T d2astb2 126 LNLSWCFDFT 135 (284)
T ss_dssp EECCCCTTCC
T ss_pred cccccccccc
Confidence 8888876554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.6e-13 Score=134.27 Aligned_cols=182 Identities=17% Similarity=0.241 Sum_probs=95.9
Q ss_pred CCCCcceEeeecCCCCcc-cC-CCCCCCCCcEEEecccCCCCCCchhhhcCCCCCccEEEEecCCCCcccccc---cCcC
Q 035579 387 SLCSLREIGIYKCSSLVS-FP-EVALPSKLEKIHIGACDALKSLPEAWMCDTNSSLEILYIEGCRSLTYIAAV---QLPS 461 (814)
Q Consensus 387 ~l~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~ 461 (814)
...+|++|++++|..... +. .+..+++|++|++++|......+..+ ..+++|++|++++|..+++.... ..++
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~ 121 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH--hcCCCCcCccccccccccccccchhhHHHH
Confidence 455777777777643221 12 13456777777777776333333333 56677777777777666542211 1223
Q ss_pred ccceeeeccccCCcccccccCCCCCCCCCCCCCCccEEeecCCCCcccccccCCCcccccEEEEeccCC-c--chhhHhh
Q 035579 462 SLKNLQIHGCYNIKTLTVEEGIPSSSSSRYTSSILEHLSIVGCPSLTCIFSKNELPATLESLSVYKCSK-L--ESIAERL 538 (814)
Q Consensus 462 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~-~--~~~~~~~ 538 (814)
+|++|++++|..+.+.... ......++.|+.|++++|.. + ..+....
T Consensus 122 ~L~~L~ls~c~~~~~~~~~------------------------------~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~ 171 (284)
T d2astb2 122 RLDELNLSWCFDFTEKHVQ------------------------------VAVAHVSETITQLNLSGYRKNLQKSDLSTLV 171 (284)
T ss_dssp TCCEEECCCCTTCCHHHHH------------------------------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hccccccccccccccccch------------------------------hhhcccccccchhhhcccccccccccccccc
Confidence 3444444444333210000 00111234566666665431 1 2244445
Q ss_pred cCCCCcceEeecccCCc-ccccccCCCCCCccEEEecCCCCceec-CCCCCCCCCcceEeeccc
Q 035579 539 DNNTSLETIGINFCENL-KILPSGLHNLRQLREITIQRCGNLVSF-PEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 539 ~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~ 600 (814)
.++++|++|++++|... ......+..+++|++|++++|..++.- ...+..+++|+.|++++|
T Consensus 172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 56777777777776543 344455666777777777776554422 123445666777777666
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.8e-12 Score=140.49 Aligned_cols=109 Identities=15% Similarity=0.014 Sum_probs=59.8
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCc-----cCCccccccCCCCCCCCCcceEEeccCCCCc
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMV-----SFPPEDKRLGTALPLPASLTDLEIGRFPNLE 709 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~-----~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 709 (814)
..|+.+++++|.............+...++|++|+|++| .+. .++.... ...+.|++|++++| .++
T Consensus 312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N--~i~~~g~~~l~~~l~------~~~~~L~~L~Ls~n-~i~ 382 (460)
T d1z7xw1 312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN--RLEDAGVRELCQGLG------QPGSVLRVLWLADC-DVS 382 (460)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHHHHHT------STTCCCCEEECTTS-CCC
T ss_pred cccccccccccchhhhhhhhcccccccccchhhhheeee--cccCcccchhhhhhh------cccCCCCEEECCCC-CCC
Confidence 466777777766544332211123345567777777775 332 1222110 12456778888875 564
Q ss_pred c-----cccccccCCCCCeEEecCCCCCCccCCCC-------CcCCccEEeecCCc
Q 035579 710 R-----LSSSIVDLQNLTELCLRDCPKLKYFPEKG-------LPSSLLRLSILSCP 753 (814)
Q Consensus 710 ~-----l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-------l~~~L~~L~i~~c~ 753 (814)
. ++..+..+++|++|+++++ .++.-.... ....|+.|++.++.
T Consensus 383 ~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~ 437 (460)
T d1z7xw1 383 DSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 437 (460)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred hHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence 3 3445666788888888874 565411100 12367888887765
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.11 E-value=1.3e-10 Score=108.65 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=84.5
Q ss_pred eEEecC-ccCccccCCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCC
Q 035579 618 ELTIGG-ALPSLEEDGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPAS 696 (814)
Q Consensus 618 ~L~l~~-~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~ 696 (814)
.++.++ ++.++|.. .++++++|+|++|.+...... ..|..+++|++|++++| .+..++.+.+ ..+++
T Consensus 12 ~v~Cs~~~L~~iP~~-lp~~l~~L~Ls~N~i~~~~~~---~~f~~l~~L~~L~L~~N--~i~~~~~~~~------~~~~~ 79 (192)
T d1w8aa_ 12 TVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRN--QLTGIEPNAF------EGASH 79 (192)
T ss_dssp EEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSS--CCCCBCTTTT------TTCTT
T ss_pred EEEEeCCCcCccCCC-CCCCCCEEEeCCCCCcccccc---cccCCCceEeeeecccc--cccccccccc------ccccc
Confidence 344444 44444432 346777788888776543221 56777888888888876 5666665543 46788
Q ss_pred cceEEeccCCCCccccc-ccccCCCCCeEEecCCCCCCccCCCCC--cCCccEEeecCCc
Q 035579 697 LTDLEIGRFPNLERLSS-SIVDLQNLTELCLRDCPKLKYFPEKGL--PSSLLRLSILSCP 753 (814)
Q Consensus 697 L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~~l--~~~L~~L~i~~c~ 753 (814)
|++|++++ |+++.+|+ .+.++++|++|+|++ ++++.+|.+.+ .++|+++++.++|
T Consensus 80 L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 80 IQELQLGE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEEECCS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cceeeecc-ccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccccc
Confidence 88888888 67888876 577888888888888 57888877665 6788888888765
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.9e-11 Score=132.31 Aligned_cols=10 Identities=40% Similarity=0.414 Sum_probs=6.0
Q ss_pred CCCeEEecCC
Q 035579 720 NLTELCLRDC 729 (814)
Q Consensus 720 ~L~~L~l~~c 729 (814)
.|+.|++.++
T Consensus 427 ~L~~l~l~~~ 436 (460)
T d1z7xw1 427 LLEQLVLYDI 436 (460)
T ss_dssp CCCEEECTTC
T ss_pred ccCEEECCCC
Confidence 5666666653
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=6.6e-11 Score=106.63 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=38.4
Q ss_pred CCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc--ccccCCCCCeEEecCCCCCCccCC
Q 035579 660 HRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS--SIVDLQNLTELCLRDCPKLKYFPE 737 (814)
Q Consensus 660 ~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~lp~ 737 (814)
..+++|++|++++| .+..++...+ ..+++|++|++++ |.++.++. .+..+++|++|++++| .++..|.
T Consensus 60 ~~l~~L~~L~ls~N--~i~~l~~~~~------~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~ 129 (162)
T d1a9na_ 60 PLLRRLKTLLVNNN--RICRIGEGLD------QALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKH 129 (162)
T ss_dssp CCCSSCCEEECCSS--CCCEECSCHH------HHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTT
T ss_pred ccCcchhhhhcccc--cccCCCcccc------ccccccccceecc-ccccccccccccccccccchhhcCCC-ccccccc
Confidence 34444444444444 3444444321 1345555555555 44554443 4455666666666664 3444442
Q ss_pred C-----CCcCCccEEee
Q 035579 738 K-----GLPSSLLRLSI 749 (814)
Q Consensus 738 ~-----~l~~~L~~L~i 749 (814)
. ..+++|++||-
T Consensus 130 ~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 130 YRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp HHHHHHHHCTTCSEETT
T ss_pred hHHHHHHHCCCcCeeCC
Confidence 0 11456666553
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=2.1e-10 Score=97.96 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=42.1
Q ss_pred ceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecC
Q 035579 545 ETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGG 623 (814)
Q Consensus 545 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 623 (814)
|+|++++|.+... + .+..+++|++|++++| .++.+|..+..+++|++|++++| .++.+| .+..+++|++|++++
T Consensus 1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCSSC-C-CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCCCC-c-ccccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCC
Confidence 4566666666533 2 3566666666666665 45566655566666666666666 444444 244444444444444
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.8e-10 Score=103.64 Aligned_cols=127 Identities=19% Similarity=0.112 Sum_probs=67.5
Q ss_pred hcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeecccccccccccc-ccCCCCc
Q 035579 538 LDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKG-LHNLTSL 616 (814)
Q Consensus 538 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L 616 (814)
+.+..++++|+|++|.+... +..+..+++|+.|++++| .+..++ .+..+++|++|++++| .+..+|.. +..+++|
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 89 (162)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccc-cccCCCcccccccccc
Confidence 34455566666666665443 334455666666666666 445553 4555666666666666 34444432 3455666
Q ss_pred ceEEecC-ccCcccc---CCCCCceeEEEecCCcchhhhhhhcccccCCCCcccEEE
Q 035579 617 QELTIGG-ALPSLEE---DGLPTNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLT 669 (814)
Q Consensus 617 ~~L~l~~-~~~~l~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~ 669 (814)
+.|++++ .+..++. ...+++|++|++++|+....... .+..+..+|+|+.||
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~-r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLD 145 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEET
T ss_pred ccceeccccccccccccccccccccchhhcCCCccccccch-HHHHHHHCCCcCeeC
Confidence 6666655 4433322 23346666666666655433210 002345556666655
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=2.6e-10 Score=97.36 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=58.0
Q ss_pred cEEEEeccCCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccc
Q 035579 521 ESLSVYKCSKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 521 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~ 600 (814)
+.|++++|+.. .++ .+..+++|++|++++|.+. .+|..++.+++|++|++++| .++.+| .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCC
Confidence 45677776543 333 3677777777777777665 34556677777777777776 555565 3666777777777777
Q ss_pred cccccccc--cccCCCCcceEEec
Q 035579 601 ERLEALPK--GLHNLTSLQELTIG 622 (814)
Q Consensus 601 ~~l~~lp~--~~~~l~~L~~L~l~ 622 (814)
.++.+|. .+..+++|+.|+++
T Consensus 76 -~i~~~~~~~~l~~~~~L~~L~l~ 98 (124)
T d1dcea3 76 -RLQQSAAIQPLVSCPRLVLLNLQ 98 (124)
T ss_dssp -CCCSSSTTGGGGGCTTCCEEECT
T ss_pred -ccCCCCCchhhcCCCCCCEEECC
Confidence 4444432 23344444444333
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.88 E-value=2.6e-09 Score=99.49 Aligned_cols=105 Identities=13% Similarity=0.206 Sum_probs=67.5
Q ss_pred cccccEEEEeccCCcchh-hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcce
Q 035579 517 PATLESLSVYKCSKLESI-AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSE 594 (814)
Q Consensus 517 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~ 594 (814)
++++++|++++|.....+ +..|.++++|+.|++++|.+....+..+..+++|++|++++| .+..+|. .|.++++|++
T Consensus 28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~ 106 (192)
T d1w8aa_ 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCE
T ss_pred CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHhCCCcccc
Confidence 346777777776665433 445677777777777777777777777777777777777776 4555544 4566777777
Q ss_pred Eeeccccccccc-cccccCCCCcceEEecC
Q 035579 595 LRIFQCERLEAL-PKGLHNLTSLQELTIGG 623 (814)
Q Consensus 595 L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~ 623 (814)
|+|++| .++.+ |..|..+++|+++++++
T Consensus 107 L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 107 LNLYDN-QISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp EECCSS-CCCEECTTSSTTCTTCCEEECTT
T ss_pred cccCCc-cccccCHHHhcCCcccccccccc
Confidence 777777 44444 33455555555555544
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.78 E-value=8.6e-11 Score=109.93 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=93.2
Q ss_pred ccEEEEecc-CCcchhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeec
Q 035579 520 LESLSVYKC-SKLESIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIF 598 (814)
Q Consensus 520 L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 598 (814)
.+.+++.+. ..++.++..+..+++|++|++++|.+... + .+..+++|++|++++| .++.+|.....+++|+.|+++
T Consensus 25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~ 101 (198)
T d1m9la_ 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECS
T ss_pred cceeeeecccCchhhhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhccc-ccccccccccccccccccccc
Confidence 444555442 24566778899999999999999987754 3 5788999999999998 677777544445689999999
Q ss_pred cccccccccccccCCCCcceEEecC-ccCccc---cCCCCCceeEEEecCCcchhhh
Q 035579 599 QCERLEALPKGLHNLTSLQELTIGG-ALPSLE---EDGLPTNLHSLDIRGNMEIWKS 651 (814)
Q Consensus 599 ~~~~l~~lp~~~~~l~~L~~L~l~~-~~~~l~---~~~~~~~L~~L~l~~n~~~~~~ 651 (814)
+| .++.++ .+..+++|+.|++++ .+..++ ....+++|+.|++++|+.....
T Consensus 102 ~N-~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 156 (198)
T d1m9la_ 102 YN-QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp EE-ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred cc-cccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence 98 566664 467788888888888 565554 2455788888888888765543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.69 E-value=1.3e-09 Score=112.39 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=37.2
Q ss_pred hhHhhcCCCCcceEeecccCCccc-----ccccCCCCCCccEEEecCCCCce----ecCCCCCCCCCcceEeeccc
Q 035579 534 IAERLDNNTSLETIGINFCENLKI-----LPSGLHNLRQLREITIQRCGNLV----SFPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 534 ~~~~~~~l~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~ 600 (814)
+...+...+.|+.|++++|.+... +...+..+++|++|++++|..-. .+...+..+++|++|++++|
T Consensus 178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n 253 (344)
T d2ca6a1 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 253 (344)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence 444455666777777777665431 23345556677777777663211 12223444556666666666
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.67 E-value=1.3e-10 Score=108.76 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=68.7
Q ss_pred ccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEeeccccccccccccccCCCCcceEEecCccCccccCCCCCce
Q 035579 558 LPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRIFQCERLEALPKGLHNLTSLQELTIGGALPSLEEDGLPTNL 637 (814)
Q Consensus 558 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~l~~~~~~~~L 637 (814)
++..+..+++|++|++++| .++.++ .+..+++|++|++++| .++.+|.....+ ++|
T Consensus 40 l~~sl~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~---------------------~~L 95 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVA---------------------DTL 95 (198)
T ss_dssp CHHHHHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHH---------------------HHC
T ss_pred hhhHHhcccccceeECccc-CCCCcc-cccCCccccChhhccc-cccccccccccc---------------------ccc
Confidence 3445566666777777665 455554 3555666666666666 344454333333 345
Q ss_pred eEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCcccccc---
Q 035579 638 HSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSSS--- 714 (814)
Q Consensus 638 ~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--- 714 (814)
++|++++|.+... ..+..+++|+.|++++| .+..++.-. .+..+++|+.|++++ |.+...+..
T Consensus 96 ~~L~l~~N~i~~l------~~~~~l~~L~~L~L~~N--~i~~~~~~~-----~l~~l~~L~~L~L~~-N~l~~~~~~~~~ 161 (198)
T d1m9la_ 96 EELWISYNQIASL------SGIEKLVNLRVLYMSNN--KITNWGEID-----KLAALDKLEDLLLAG-NPLYNDYKENNA 161 (198)
T ss_dssp CEEECSEEECCCH------HHHHHHHHSSEEEESEE--ECCCHHHHH-----HHTTTTTCSEEEECS-SHHHHHHCTTTT
T ss_pred ccccccccccccc------ccccccccccccccccc--hhccccccc-----cccCCCccceeecCC-CccccCcccccc
Confidence 5555555544432 12445566666666665 444443210 013466777777776 334433221
Q ss_pred --------cccCCCCCeEE
Q 035579 715 --------IVDLQNLTELC 725 (814)
Q Consensus 715 --------~~~l~~L~~L~ 725 (814)
+..+|+|+.||
T Consensus 162 ~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 162 TSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHHHCSSCCEES
T ss_pred hhhHHHHHHHHCCCcCEeC
Confidence 34566666665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=6.9e-08 Score=85.72 Aligned_cols=106 Identities=18% Similarity=0.128 Sum_probs=78.0
Q ss_pred CceeEEEecCCcchhhhhhhcccccCCCCcccEEEEecCCCCCccCCccccccCCCCCCCCCcceEEeccCCCCccccc-
Q 035579 635 TNLHSLDIRGNMEIWKSMIERGRGFHRFSSLRHLTIDGCDDDMVSFPPEDKRLGTALPLPASLTDLEIGRFPNLERLSS- 713 (814)
Q Consensus 635 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~- 713 (814)
...+.++.+++.....+ ..+..+++|++|+++++ ..++.++...+ ..+++|+.|++++ |+++.|++
T Consensus 8 ~~~~~l~c~~~~~~~~p-----~~l~~l~~l~~L~l~~n-~~l~~i~~~~f------~~l~~L~~L~Ls~-N~l~~i~~~ 74 (156)
T d2ifga3 8 HGSSGLRCTRDGALDSL-----HHLPGAENLTELYIENQ-QHLQHLELRDL------RGLGELRNLTIVK-SGLRFVAPD 74 (156)
T ss_dssp SSSSCEECCSSCCCTTT-----TTSCSCSCCSEEECCSC-SSCCEECGGGS------CSCCCCSEEECCS-SCCCEECTT
T ss_pred CCCCeEEecCCCCccCc-----ccccCccccCeeecCCC-ccccccCchhh------ccccccCcceeec-cccCCcccc
Confidence 34445666655544332 45677788888888763 25778877653 5678899999988 78888866
Q ss_pred ccccCCCCCeEEecCCCCCCccCCCCC-cCCccEEeecCCch
Q 035579 714 SIVDLQNLTELCLRDCPKLKYFPEKGL-PSSLLRLSILSCPL 754 (814)
Q Consensus 714 ~~~~l~~L~~L~l~~c~~l~~lp~~~l-~~~L~~L~i~~c~~ 754 (814)
.+..+++|++|++++ ++++.+|...+ ..+|++|++.++|.
T Consensus 75 ~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 75 AFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp GGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cccccccccceeccC-CCCcccChhhhccccccccccCCCcc
Confidence 678889999999988 57888888766 55788999988763
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.54 E-value=8.8e-09 Score=105.97 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=21.4
Q ss_pred hhcCCCCcceEeecccCCccc----ccccCCCCCCccEEEecCC
Q 035579 537 RLDNNTSLETIGINFCENLKI----LPSGLHNLRQLREITIQRC 576 (814)
Q Consensus 537 ~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~~ 576 (814)
.+..+++|+.|++++|.+... +...+...++|++|++++|
T Consensus 88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 131 (344)
T d2ca6a1 88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131 (344)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHhhCCCcccccccccccccccccchhhhhcccccchheecccc
Confidence 344556666666666655432 2223334556666666665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=2.5e-07 Score=81.99 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=38.4
Q ss_pred cccEEEEeccCCcchh-hHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCCCCCCCCCcceEee
Q 035579 519 TLESLSVYKCSKLESI-AERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPEGGLPCAKLSELRI 597 (814)
Q Consensus 519 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 597 (814)
+|++|++++++.++.+ +..|.++++|+.|++++|.+....+.+|..+++|++|+|++| .++.+|.......+|+.|+|
T Consensus 32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L 110 (156)
T d2ifga3 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVL 110 (156)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEEC
T ss_pred ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhhhcccccccccc
Confidence 4444555444333333 233455555555555555554444444555555555555554 34444443333334555555
Q ss_pred ccc
Q 035579 598 FQC 600 (814)
Q Consensus 598 ~~~ 600 (814)
++|
T Consensus 111 ~~N 113 (156)
T d2ifga3 111 SGN 113 (156)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=1.1e-05 Score=71.51 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=60.7
Q ss_pred hhhHhhcCCCCcceEeecccCCccc--ccccCCCCCCccEEEecCCCCceecCC-CCCCCCCcceEeeccccccccccc-
Q 035579 533 SIAERLDNNTSLETIGINFCENLKI--LPSGLHNLRQLREITIQRCGNLVSFPE-GGLPCAKLSELRIFQCERLEALPK- 608 (814)
Q Consensus 533 ~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~- 608 (814)
.++.....+++|++|++++|.+... ++..+..+++|+.|++++| .++.++. .......|+.|++++|+.......
T Consensus 56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~ 134 (162)
T d1koha1 56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134 (162)
T ss_dssp HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccc
Confidence 3444556789999999999998763 3455667899999999998 6666654 223345789999999865443321
Q ss_pred ------cccCCCCcceEE
Q 035579 609 ------GLHNLTSLQELT 620 (814)
Q Consensus 609 ------~~~~l~~L~~L~ 620 (814)
.+..+|+|+.||
T Consensus 135 ~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 135 STYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHHTTSTTCCEET
T ss_pred hhHHHHHHHHCCCCCEEC
Confidence 245677777664
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.30 E-value=0.0012 Score=58.32 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=53.6
Q ss_pred hhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccc----cccccCCCCCcceEeeecCCC
Q 035579 326 ELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK----LPQSSLSLCSLREIGIYKCSS 401 (814)
Q Consensus 326 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~ 401 (814)
....+.++|++|+|+++..+..-....+...+..- ++|++|+|++|.+... +...+...+.|++|+|++|.
T Consensus 9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n----~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~- 83 (167)
T d1pgva_ 9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS----KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF- 83 (167)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC----SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC----CccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-
Confidence 33455688888888875545432222222222222 6788888888876432 22334456778888888764
Q ss_pred CcccC------CCCCCCCCcEEEecccC
Q 035579 402 LVSFP------EVALPSKLEKIHIGACD 423 (814)
Q Consensus 402 l~~~~------~~~~~~~L~~L~l~~~~ 423 (814)
++.-. .+...++|++|++++|.
T Consensus 84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 84 LTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred cchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 33211 13445677777777764
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.00036 Score=61.39 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=54.9
Q ss_pred ccccEEEEeccCCcc--hhhHhhcCCCCcceEeecccCCcccccccCCCCCCccEEEecCCCCceecCC-------CCCC
Q 035579 518 ATLESLSVYKCSKLE--SIAERLDNNTSLETIGINFCENLKILPSGLHNLRQLREITIQRCGNLVSFPE-------GGLP 588 (814)
Q Consensus 518 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-------~~~~ 588 (814)
+.|++|++++|.... .++..+..+++|+.|++++|.+...-+-......+|++|++++|+....... .+..
T Consensus 65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~ 144 (162)
T d1koha1 65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144 (162)
T ss_dssp TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence 468888888876543 3456678899999999999988864332333455799999999865443321 1345
Q ss_pred CCCcceEe
Q 035579 589 CAKLSELR 596 (814)
Q Consensus 589 l~~L~~L~ 596 (814)
+|+|+.||
T Consensus 145 ~P~L~~LD 152 (162)
T d1koha1 145 FPKLLRLD 152 (162)
T ss_dssp STTCCEET
T ss_pred CCCCCEEC
Confidence 78888886
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.89 E-value=0.0012 Score=58.26 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=30.5
Q ss_pred HhhcCCCCcceEeecccCCcc----cccccCCCCCCccEEEecCCCCcee-----cCCCCCCCCCcceEeeccc
Q 035579 536 ERLDNNTSLETIGINFCENLK----ILPSGLHNLRQLREITIQRCGNLVS-----FPEGGLPCAKLSELRIFQC 600 (814)
Q Consensus 536 ~~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~ 600 (814)
..+...+.|+.|++++|.+.. .+...+...+.|++|++++|. ++. +...+...++|++|++++|
T Consensus 38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 38 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCC
Confidence 345555566666666655542 122233344556666666652 221 1112333455666666554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.18 E-value=0.0048 Score=54.16 Aligned_cols=118 Identities=8% Similarity=0.008 Sum_probs=62.6
Q ss_pred hhhhhcCCCCCeEEEecCCCcccchhhHHHHHHHHhhhccccccEEEeeccCCccc----cccccCCCCCcceEeeecCC
Q 035579 325 NELLQDICSLRRLTIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLILSCCEGLVK----LPQSSLSLCSLREIGIYKCS 400 (814)
Q Consensus 325 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~ 400 (814)
.......++|++|+++++..+..-....+...+... ++|++|++++|.+... +...+...+.++.+++++|.
T Consensus 10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n----~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~ 85 (166)
T d1io0a_ 10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 85 (166)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC----CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence 334456678888888775555433332233333332 7788888888865432 22344556777788777754
Q ss_pred CCccc-----CCCCCCCCCcEEEecccC-CCCC-----CchhhhcCCCCCccEEEEecC
Q 035579 401 SLVSF-----PEVALPSKLEKIHIGACD-ALKS-----LPEAWMCDTNSSLEILYIEGC 448 (814)
Q Consensus 401 ~l~~~-----~~~~~~~~L~~L~l~~~~-~l~~-----~~~~~~~~~l~~L~~L~l~~~ 448 (814)
..... ..+...++|+.++|+.+. .++. +...+ ...++|+.|+++.+
T Consensus 86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L--~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 86 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML--EKNTTLLKFGYHFT 142 (166)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH--HHCSSCCEEECCCS
T ss_pred ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHH--HhCCCcCEEeCcCC
Confidence 32211 123345667766665332 1222 11112 34566777776653
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=94.35 E-value=0.0058 Score=53.59 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=22.5
Q ss_pred hHhhcCCCCcceEeecccCCccc----ccccCCCCCCccEEEecCC
Q 035579 535 AERLDNNTSLETIGINFCENLKI----LPSGLHNLRQLREITIQRC 576 (814)
Q Consensus 535 ~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~~ 576 (814)
...+...++|++|++++|.+... +...+...++++.+++++|
T Consensus 39 ~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 39 AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence 33445566666666666655432 2223344556666666665
|