Citrus Sinensis ID: 035580

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWESQCRAFMGV
Secondary Structure (PSIPRED)
cccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccHcccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MCACSAASVTIVDglkaaepkekcplcreagvyeGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWESQCRAFMGV
Flexible Loop (DISEMBL)
mcacsaasvtivdglkaaepkekcpLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKehwesqcrafmgv
Low Complexity Region (SEG)
MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWESQCRAFMGV
Disordered region (IsUnstruct)
******ASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVR****************
Disordered Region (DISOPRED)
*****AASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWE***************EHWESQCRAFMGV
Disordered Region (DISEMBL)
********VTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWESQCRAFMGV
Disordered Region (DISPRO)
MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWESQCRAFMGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWESQCRAFMGV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q7XI73	321	Probable E3 ubiquitin-pro	yes	no	1.0	0.258	0.771	3e-33
B8B5U8	321	Probable E3 ubiquitin-pro	N/A	no	1.0	0.258	0.771	3e-33
Q9SRX9	335	E3 ubiquitin-protein liga	yes	no	1.0	0.247	0.722	2e-31
Q7XZZ3	339	Probable E3 ubiquitin-pro	no	no	0.987	0.241	0.5	6e-19
A2XK56	339	Probable E3 ubiquitin-pro	N/A	no	0.987	0.241	0.5	6e-19
Q8GW10	335	Probable E3 ubiquitin-pro	no	no	0.975	0.241	0.543	1e-18

>sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa subsp. japonica GN=Os07g0673200 PE=2 SV=1

 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 75/83 (90%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           +C+CSAASVTIVDGLK+AE K KCPLCR+AGV+  AVHLDELN+LLS SC EYWE+R++M
Sbjct: 239 LCSCSAASVTIVDGLKSAERKSKCPLCRQAGVFPNAVHLDELNMLLSYSCPEYWEKRIQM 298

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ERV RVR AKEHWESQCRAF+G+
Sbjct: 299 ERVERVRLAKEHWESQCRAFLGM 321

Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|B8B5U8|BAHL2_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica GN=OsI_27296 PE=3 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 75/83 (90%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           +C+CSAASVTIVDGLK+AE K KCPLCR+AGV+  AVHLDELN+LLS SC EYWE+R++M
Sbjct: 239 LCSCSAASVTIVDGLKSAERKSKCPLCRQAGVFPNAVHLDELNMLLSYSCPEYWEKRIQM 298

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ERV RVR AKEHWESQCRAF+G+
Sbjct: 299 ERVERVRLAKEHWESQCRAFLGM 321

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana GN=BAH1 PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/83 (72%), Positives = 71/83 (85%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           MCACSAASV +VDGLK AE  EKCPLCRE GVY+GAVHLDELN+LL RSC++YWEER K 
Sbjct: 253 MCACSAASVNVVDGLKTAEATEKCPLCREDGVYKGAVHLDELNILLKRSCRDYWEERRKT 312

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ER  R++QAKE+W+ QCR+F G+
Sbjct: 313 ERAERLQQAKEYWDYQCRSFTGI 335

Mediates E2-dependent protein ubiquitination. Plays a role in salicylic acid-mediated negative feedback regulation of salicylic acid (SA) accumulation. May be involved in the overall regulation of SA, benzoic acid and phenylpropanoid biosynthesis. Controls the adaptability to nitrogen limitation by channeling the phenylpropanoid metabolic flux to the induced anthocyanin synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0650900 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 58/82 (70%)

Query: 2   CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
           CAC AASV I  G+K+A P+ KCP+CR  GV+  AVH+ EL+LL+    ++YW +RL+ E
Sbjct: 258 CACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHMTELDLLIKTRSKDYWRQRLREE 317

Query: 62  RVARVRQAKEHWESQCRAFMGV 83
           R   V+Q+KE+W+SQ    MG+
Sbjct: 318 RNEMVKQSKEYWDSQAMLSMGI 339

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica GN=OsI_12825 PE=3 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 58/82 (70%)

Query: 2   CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
           CAC AASV I  G+K+A P+ KCP+CR  GV+  AVH+ EL+LL+    ++YW +RL+ E
Sbjct: 258 CACGAASVYIFQGVKSAPPEAKCPVCRSDGVFAHAVHMTELDLLIKTRSKDYWRQRLREE 317

Query: 62  RVARVRQAKEHWESQCRAFMGV 83
           R   V+Q+KE+W+SQ    MG+
Sbjct: 318 RNEMVKQSKEYWDSQAMLSMGI 339

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis thaliana GN=RF178 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 55/81 (67%)

Query: 2   CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
           CACSAASV I  G+KAA    KCP+CREAGVY  AVH+ EL+LLL    +EYW+ER+  E
Sbjct: 254 CACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVHMIELHLLLKTRSKEYWKERMMNE 313

Query: 62  RVARVRQAKEHWESQCRAFMG 82
           R   V+Q+K  W  Q +  +G
Sbjct: 314 RSEMVKQSKMFWNEQTKHMIG 334

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
225437340	324	PREDICTED: E3 ubiquitin-protein ligase B	1.0	0.256	0.879	7e-37
147865591	239	hypothetical protein VITISV_015455 [Viti	1.0	0.347	0.879	8e-37
255564140	330	ubiquitin-protein ligase, putative [Rici	1.0	0.251	0.867	2e-35
224068330	320	predicted protein [Populus trichocarpa]	1.0	0.259	0.819	3e-35
224128498	320	predicted protein [Populus trichocarpa]	1.0	0.259	0.819	1e-34
357442533	316	E3 ubiquitin-protein ligase BAH1 [Medica	0.987	0.259	0.817	4e-34
37725955	227	heavy metal-induced putative protein 1,	0.987	0.361	0.804	5e-34
255564136	226	ubiquitin-protein ligase, putative [Rici	1.0	0.367	0.819	4e-33
356535248	315	PREDICTED: E3 ubiquitin-protein ligase B	0.987	0.260	0.804	8e-33
356505572	324	PREDICTED: E3 ubiquitin-protein ligase B	1.0	0.256	0.771	8e-33

>gi|225437340|ref|XP_002265436.1| PREDICTED: E3 ubiquitin-protein ligase BAH1 [Vitis vinifera] gi|297743873|emb|CBI36843.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 78/83 (93%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           MCACSAASVTIVDGLK AEPKEKCPLCREAGVYEGAVHL+ELN+LLSRSC EYWE+RL+ 
Sbjct: 242 MCACSAASVTIVDGLKIAEPKEKCPLCREAGVYEGAVHLEELNILLSRSCHEYWEQRLQT 301

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ER  R+RQAKEHWESQCRAFMGV
Sbjct: 302 ERTERIRQAKEHWESQCRAFMGV 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865591|emb|CAN83652.1| hypothetical protein VITISV_015455 [Vitis vinifera]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 78/83 (93%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           MCACSAASVTIVDGLK AEPKEKCPLCREAGVYEGAVHL+ELN+LLSRSC EYWE+RL+ 
Sbjct: 157 MCACSAASVTIVDGLKIAEPKEKCPLCREAGVYEGAVHLEELNILLSRSCHEYWEQRLQT 216

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ER  R+RQAKEHWESQCRAFMGV
Sbjct: 217 ERTERIRQAKEHWESQCRAFMGV 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564140|ref|XP_002523067.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223537629|gb|EEF39252.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/83 (86%), Positives = 78/83 (93%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           MCACSAASVTIVDGL+AAEPKEKCPLCREAGV EGAVHL+ELN+LLSRSC EYWE+RL+ 
Sbjct: 248 MCACSAASVTIVDGLRAAEPKEKCPLCREAGVNEGAVHLEELNILLSRSCPEYWEQRLQS 307

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ERV R+RQAKEHWE QCRAFMGV
Sbjct: 308 ERVERIRQAKEHWEFQCRAFMGV 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068330|ref|XP_002302708.1| predicted protein [Populus trichocarpa] gi|222844434|gb|EEE81981.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 78/83 (93%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           MCACSAASVTIVDGLKAAEPKEKCPLCR+ GVYEG++HL+ELN+LLSRSC EYWE+RL+ 
Sbjct: 238 MCACSAASVTIVDGLKAAEPKEKCPLCRKTGVYEGSLHLEELNILLSRSCHEYWEQRLQT 297

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ER+ R+RQ KEHWESQCRAF+GV
Sbjct: 298 ERIERIRQVKEHWESQCRAFVGV 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128498|ref|XP_002320347.1| predicted protein [Populus trichocarpa] gi|222861120|gb|EEE98662.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 77/83 (92%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           MCACSAASVTIVDGLKAAEPKEKCPLCR+ GVYEGA+HL+ELN+LLSRS  +YWE+RL+ 
Sbjct: 238 MCACSAASVTIVDGLKAAEPKEKCPLCRKTGVYEGALHLEELNILLSRSFHKYWEQRLQT 297

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ER+ R+RQ KEHWESQCRAFMGV
Sbjct: 298 ERIERIRQVKEHWESQCRAFMGV 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442533|ref|XP_003591544.1| E3 ubiquitin-protein ligase BAH1 [Medicago truncatula] gi|355480592|gb|AES61795.1| E3 ubiquitin-protein ligase BAH1 [Medicago truncatula]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/82 (81%), Positives = 76/82 (92%)

Query: 2   CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
           CACSAASVTIVDGLK    KEKCP+CREAGVYEGAVHL+ELN+LL +SC+EYWEERL+ME
Sbjct: 235 CACSAASVTIVDGLKETHSKEKCPMCREAGVYEGAVHLEELNILLGKSCKEYWEERLQME 294

Query: 62  RVARVRQAKEHWESQCRAFMGV 83
           RV RV+QAKEHWE+QCRAFMG+
Sbjct: 295 RVERVKQAKEHWETQCRAFMGI 316

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37725955|gb|AAO27261.1| heavy metal-induced putative protein 1, partial [Pisum sativum]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 75/82 (91%)

Query: 2   CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
           CACS+AS+TIVDGLK A PKEKCPLCR AGVYEGAVHL+ELN++L RSC EYWE RL+ME
Sbjct: 146 CACSSASLTIVDGLKEAHPKEKCPLCRSAGVYEGAVHLEELNIMLGRSCTEYWEXRLQME 205

Query: 62  RVARVRQAKEHWESQCRAFMGV 83
           RV RV+QAKEHWE+QCRAFMG+
Sbjct: 206 RVERVKQAKEHWETQCRAFMGI 227

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564136|ref|XP_002523065.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223537627|gb|EEF39250.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 76/83 (91%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           MCACSAASVTI+DGLKAAE  ++CPLCR+AGVYEGAVHL+ELN LLSRSC EYWE+RL+ 
Sbjct: 144 MCACSAASVTIIDGLKAAEHNKRCPLCRKAGVYEGAVHLEELNNLLSRSCPEYWEQRLQS 203

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ERV RVRQAKEHWE QCRAF+GV
Sbjct: 204 ERVERVRQAKEHWELQCRAFLGV 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535248|ref|XP_003536160.1| PREDICTED: E3 ubiquitin-protein ligase BAH1-like [Glycine max]

 Score =  144 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/82 (80%), Positives = 74/82 (90%)

Query: 2   CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
           CACS ASVTIVDGLKAA PKEKCPLCRE  VYE AVHL+ELN+LL RSC+EYWE+RL+ME
Sbjct: 234 CACSTASVTIVDGLKAANPKEKCPLCREGRVYEDAVHLEELNILLGRSCREYWEQRLQME 293

Query: 62  RVARVRQAKEHWESQCRAFMGV 83
           RV RV+Q KEHWE+QCRAFMG+
Sbjct: 294 RVERVKQVKEHWETQCRAFMGI 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505572|ref|XP_003521564.1| PREDICTED: E3 ubiquitin-protein ligase BAH1-like isoform 1 [Glycine max]

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 77/83 (92%)

Query: 1   MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
           +CACSAASV+IV+GLK+A+PK KCPLCRE  VYEGAVHL+ELN+LLSRSCQEYWE+R++ 
Sbjct: 242 ICACSAASVSIVNGLKSADPKMKCPLCREGAVYEGAVHLEELNILLSRSCQEYWEQRIQT 301

Query: 61  ERVARVRQAKEHWESQCRAFMGV 83
           ERV RV+Q KEHW+SQCRAF+GV
Sbjct: 302 ERVERVKQIKEHWDSQCRAFVGV 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:2024675	335	NLA "nitrogen limitation adapt	1.0	0.247	0.722	4.2e-31
TAIR|locus:2064935	335	AT2G38920 [Arabidopsis thalian	0.975	0.241	0.543	2.5e-19

TAIR|locus:2024675 NLA "nitrogen limitation adaptation" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 60/83 (72%), Positives = 71/83 (85%)

Query:     1 MCACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKM 60
             MCACSAASV +VDGLK AE  EKCPLCRE GVY+GAVHLDELN+LL RSC++YWEER K 
Sbjct:   253 MCACSAASVNVVDGLKTAEATEKCPLCREDGVYKGAVHLDELNILLKRSCRDYWEERRKT 312

Query:    61 ERVARVRQAKEHWESQCRAFMGV 83
             ER  R++QAKE+W+ QCR+F G+
Sbjct:   313 ERAERLQQAKEYWDYQCRSFTGI 335

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010167 "response to nitrate" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009697 "salicylic acid biosynthetic process" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010337 "regulation of salicylic acid metabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0080021 "response to benzoic acid stimulus" evidence=IEP;IMP

GO:0006817 "phosphate ion transport" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

TAIR|locus:2064935 AT2G38920 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 44/81 (54%), Positives = 55/81 (67%)

Query:     2 CACSAASVTIVDGLKAAEPKEKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKME 61
             CACSAASV I  G+KAA    KCP+CREAGVY  AVH+ EL+LLL    +EYW+ER+  E
Sbjct:   254 CACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVHMIELHLLLKTRSKEYWKERMMNE 313

Query:    62 RVARVRQAKEHWESQCRAFMG 82
             R   V+Q+K  W  Q +  +G
Sbjct:   314 RSEMVKQSKMFWNEQTKHMIG 334


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.131   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        83   0.00091  102 3  11 22  0.40    29
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  556 (59 KB)
  Total size of DFA:  122 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.20u 0.11s 10.31t   Elapsed:  00:00:00
  Total cpu time:  10.20u 0.11s 10.31t   Elapsed:  00:00:00
  Start:  Mon May 20 19:42:06 2013   End:  Mon May 20 19:42:06 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006817 "phosphate ion transport" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SRX9	BAH1_ARATH	6, ., 3, ., 2, ., -	0.7228	1.0	0.2477	yes	no
Q7XI73	BAHL2_ORYSJ	6, ., 3, ., 2, ., -	0.7710	1.0	0.2585	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	83.78

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=83.78  E-value=0.53  Score=31.69  Aligned_cols=24  Identities=29%  Similarity=0.722  Sum_probs=17.7

Q ss_pred             hhcccccCCCCCCCcccccccccC
Q 035580           11 IVDGLKAAEPKEKCPLCREAGVYE   34 (83)
Q Consensus        11 i~~GlK~A~~~~KCPlCRe~gVy~   34 (83)
                      |.+=|.+.+.+..||+||++-+|.
T Consensus        61 I~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   61 ILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             HHHHHccccCCCCCCCcCCeeeeC
Confidence            334456666788999999987764

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	85.69
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	82.46

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=85.69  E-value=0.63  Score=28.47  Aligned_cols=51  Identities=10%  Similarity=0.171  Sum_probs=25.1

Q ss_pred             CCCcccccccccCcchhhHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035580           22 EKCPLCREAGVYEGAVHLDELNLLLSRSCQEYWEERLKMERVARVRQAKEHWESQ   76 (83)
Q Consensus        22 ~KCPlCRe~gVy~~AVhl~EL~lLlk~rc~eYW~eRl~~ER~e~vkq~KE~wd~Q   76 (83)
                      ..||+||+.-...+-++-..-|..|.+--..++.. ++   .+..++-++||++.
T Consensus        51 ~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~-~~---~~e~~~~~~~~~~~  101 (108)
T 2ckl_A           51 KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG-LF---KNEMKRRRDFYAAH  101 (108)
T ss_dssp             SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT-HH---HHHHHHHHHHHHHS
T ss_pred             CcCcCCCccccccCcccccCcCHHHHHHHHHHhhh-HH---HHHHHhHHHHHHhC
Confidence            78999999855443222222233333322233322 22   22345567888753

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=82.46  E-value=0.92  Score=27.90  Aligned_cols=40  Identities=18%  Similarity=0.224  Sum_probs=24.9

Q ss_pred             CCCCccccccccc-------CcchhhHHHhHHHhhhhHHHHHHHHHH
Q 035580           21 KEKCPLCREAGVY-------EGAVHLDELNLLLSRSCQEYWEERLKM   60 (83)
Q Consensus        21 ~~KCPlCRe~gVy-------~~AVhl~EL~lLlk~rc~eYW~eRl~~   60 (83)
                      ...||+||+.-..       .+...-.+|.-+|++--++..++|...
T Consensus        50 ~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~~~r~~~   96 (115)
T 3l11_A           50 SLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASG   96 (115)
T ss_dssp             TSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHHHHHHHC
T ss_pred             cCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHHHHHHhh
Confidence            4689999997543       222223566666766666666655543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1k8ib2	94	Class II MHC beta chain, N-terminal domain {Mouse	88.84
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	83.22

>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: MHC antigen-recognition domain
superfamily: MHC antigen-recognition domain
family: MHC antigen-recognition domain
domain: Class II MHC beta chain, N-terminal domain
species: Mouse (Mus musculus), H2-DM [TaxId: 10090]

Probab=88.84  E-value=0.19  Score=32.30  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=26.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035580           49 SCQEYWEERLKMERVARVRQAKEHWESQC   77 (83)
Q Consensus        49 rc~eYW~eRl~~ER~e~vkq~KE~wd~Q~   77 (83)
                      .=+++|-+||+++|..=-.++++||.+-+
T Consensus        62 N~~~~lvqRl~~glq~C~~htq~FW~~lt   90 (94)
T d1k8ib2          62 NEQESLIHRLQNGLQDCATHTQPFWDVLT   90 (94)
T ss_dssp             HTCHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence            55799999999999999999999999854

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.22  E-value=0.19  Score=27.06  Aligned_cols=10  Identities=40%  Similarity=1.115  Sum_probs=8.1

Q ss_pred             CCCCcccccc
Q 035580           21 KEKCPLCREA   30 (83)
Q Consensus        21 ~~KCPlCRe~   30 (83)
                      +.+||+||++
T Consensus        39 ~~~CP~CR~~   48 (52)
T d1ur6b_          39 NGLCPACRKP   48 (52)
T ss_dssp             CCBCTTTCCB
T ss_pred             CCCCCccCCc
Confidence            4589999975