Citrus Sinensis ID: 035595

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MSVSSSAGAGEYHSKDFEWETLKQEIENDPSLQYHLLPYNSSPEAAQEAEKDSDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMFDSPDTEEKNKPHLKKFVETR
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHcccccHHHHHHHHHccccHHHccccccccccccccccccHHHHHHHHHHcccccccccccHHcccccccEEEEEEccccccHHcHHHEEEEHHHHEcccccEcccccccEEEEEcccEccccccccccccEEEEEcHHHHHHHHccccccHHcccccHHHEEccc
Coil and Loop (DISEMBL)
msvsssagageyhskdfeWETLKQEiendpslqyhllpynsspeaaqeAEKDSDAwkrfhsrhssgkffKFTAELSNCHEAALdakgnfgngsliaDFSVVIKMKILASLVdgeyynnghenfsflvdgeyysncpavsgsqnYVILANLKSYrrvmfdspdteeknkphLKKFVETR
Flexible Loop (DISEMBL)
msvsssagageyhskdfEWETLKQEIENDPSLQYHLLPYNSSPEAAQEAEKDSDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMFdspdteeknkphlkkfvetr
Low Complexity Region (SEG)
MSVSSSAGAGEYHSKDFEWETLKQEIENDPSLQYHLLPYNSSPEAAQEAEKDSDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMFDSPDTEEKNKPHLKKFVETR
Disordered region (IsUnstruct)
*****************************************************************GKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMF********************
Disordered Region (DISOPRED)
************HSKDFEWETLKQEIENDPSL**************************FHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMF***************FV***
Disordered Region (DISEMBL)
***********YHSKDFEWETLKQEIENDPSLQYHLLPYNS***************KRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMFDS******************
Disordered Region (DISPRO)
***********YHSKDFEWETLKQEIENDPSLQYHL**Y****************WKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMFDSPDTEEKNKPHLKKFV***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVSSSAGAGEYHSKDFEWETLKQEIENDPSLQYHLLPYNSSPEAAQEAEKDSDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKSYRRVMFDSPDTEEKNKPHLKKFVETR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
224123508	326	predicted protein [Populus trichocarpa]	0.460	0.251	0.532	6e-18
255561899	332	conserved hypothetical protein [Ricinus	0.488	0.262	0.494	6e-17
449520140	316	PREDICTED: methyltransferase-like protei	0.477	0.268	0.494	6e-16
449443247	313	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.348	0.198	0.611	2e-15
221222543	315	hypothetical protein 46C02.7 [Coffea can	0.5	0.282	0.455	4e-14
326367381	315	methyltransferase [Coffea arabica]	0.5	0.282	0.455	6e-14
324388026	315	methyltransferase [Coffea arabica]	0.494	0.279	0.450	6e-14
357441303	342	Methyltransferase-like protein [Medicago	0.5	0.260	0.450	4e-13
218199482	315	hypothetical protein OsI_25740 [Oryza sa	0.511	0.288	0.405	9e-12
226501340	329	uncharacterized protein LOC100278574 [Ze	0.342	0.185	0.5	4e-11

>gi|224123508|ref|XP_002319095.1| predicted protein [Populus trichocarpa] gi|222857471|gb|EEE95018.1| predicted protein [Populus trichocarpa]

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 60/92 (65%), Gaps = 10/92 (10%)

Query: 12  YHSKDFEWETLKQEIENDPSLQYHLLPYNSSPEAAQ---EAEKDSDAWKRFHSRHSSGKF 68
           Y SKDFEWETL+QEIE++PS QYHLLP+  +P + Q   +  +DS AWKRFH RHSSGKF
Sbjct: 13  YFSKDFEWETLRQEIEDNPSYQYHLLPFTCTPPSQQQEIQVSEDSKAWKRFHLRHSSGKF 72

Query: 69  FKFT-------AELSNCHEAALDAKGNFGNGS 93
           FK          EL +C E +   +   GNGS
Sbjct: 73  FKERRYLLKEFPELVSCKEFSKVLEVGCGNGS 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561899|ref|XP_002521958.1| conserved hypothetical protein [Ricinus communis] gi|223538762|gb|EEF40362.1| conserved hypothetical protein [Ricinus communis]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 12/99 (12%)

Query: 7   AGAGE-----YHSKDFEWETLKQEIENDPSLQYHLLPYNSSPEAAQEAEKDSDAWKRFHS 61
           +G GE     Y SKDFEWETLKQEIEN+PS  YH LP+ SS  A  +   DS+AW+RFH 
Sbjct: 2   SGTGEEEEANYFSKDFEWETLKQEIENNPSFSYHFLPFVSSSLAHGQESGDSNAWQRFHV 61

Query: 62  RHSSGKFFKFT-------AELSNCHEAALDAKGNFGNGS 93
           RHS+G+FFK          EL +C + +   +   GNGS
Sbjct: 62  RHSTGRFFKERRYLLKEFPELVSCRDFSKVLEVGCGNGS 100

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520140|ref|XP_004167092.1| PREDICTED: methyltransferase-like protein 6-like [Cucumis sativus]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 12/97 (12%)

Query: 9  AGEYHSKDFEWETLKQEIENDPSLQYHLLPY---NSSPEAAQEAEKDSDAWKRFHSRHSS 65
          A EY SKDF+W+ L+  +ENDP+LQYHLLP+   NS P  + EA  DS+AW RFH RHSS
Sbjct: 4  AAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSVPSVSPEA--DSNAWSRFHLRHSS 61

Query: 66 GKFFKFT-------AELSNCHEAALDAKGNFGNGSLI 95
          GKFFK          EL +C +     +   GNGS +
Sbjct: 62 GKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTV 98

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443247|ref|XP_004139391.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101221617 [Cucumis sativus]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 5/67 (7%)

Query: 9  AGEYHSKDFEWETLKQEIENDPSLQYHLLPY---NSSPEAAQEAEKDSDAWKRFHSRHSS 65
          A EY SKDF+W+ L+  +ENDP+LQYHLLP+   NS P  + EA  DS+AW RFH RHSS
Sbjct: 4  AAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSVPSVSPEA--DSNAWSRFHLRHSS 61

Query: 66 GKFFKFT 72
          GKFFK +
Sbjct: 62 GKFFKLS 68

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|221222543|gb|ABZ89181.1| hypothetical protein 46C02.7 [Coffea canephora]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 12/101 (11%)

Query: 5   SSAGAGEYHSKDFEWETLKQEIENDPSLQYHLLPY----NSSPEAAQ-EAEKDSDAWKRF 59
           S   A  Y+SKDFEW  L+ EIE +PS  YHLLP+    N+S  A+  +A  DS+AW +F
Sbjct: 2   SQEAAANYYSKDFEWNQLRLEIETNPSFLYHLLPFIDDTNASTSASTADANSDSEAWNKF 61

Query: 60  HSRHSSGKFFKFT-------AELSNCHEAALDAKGNFGNGS 93
           H+RHS+GKFFK          EL++C + A   +   GNGS
Sbjct: 62  HTRHSTGKFFKERRYLLKEFPELASCRDYAKVLEVGCGNGS 102

Source: Coffea canephora

Species: Coffea canephora

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326367381|gb|ADZ55299.1| methyltransferase [Coffea arabica]

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 12/101 (11%)

Query: 5   SSAGAGEYHSKDFEWETLKQEIENDPSLQYHLLPY----NSSPEAAQ-EAEKDSDAWKRF 59
           S   A  Y+SKDFEW  L+ EIE +PS  YHLLP+    N+S  A+  +A  DS+AW +F
Sbjct: 2   SQEAAANYYSKDFEWNHLRLEIETNPSFLYHLLPFIDDTNASTSASTADANSDSEAWNKF 61

Query: 60  HSRHSSGKFFKFT-------AELSNCHEAALDAKGNFGNGS 93
           H+RHS+GKFFK          EL++C + A   +   GNGS
Sbjct: 62  HTRHSTGKFFKERRYLLKEFPELASCRDYAKVLEVGCGNGS 102

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324388026|gb|ADY38788.1| methyltransferase [Coffea arabica]

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 60/102 (58%), Gaps = 14/102 (13%)

Query: 5   SSAGAGEYHSKDFEWETLKQEIENDPSLQYHLLPY------NSSPEAAQEAEKDSDAWKR 58
           S   A  Y+SKDFEW  L+ EIE +PS  YHLLP+      N+S   A +A  DS+AW +
Sbjct: 2   SQEAAANYYSKDFEWNQLRLEIETNPSFLYHLLPFIDDTNANTSASTA-DANSDSEAWNK 60

Query: 59  FHSRHSSGKFFKFT-------AELSNCHEAALDAKGNFGNGS 93
           FH+RHS+GKFFK          EL++C + A   +   GNGS
Sbjct: 61  FHTRHSTGKFFKERRYLLKEFPELASCRDYAKVLEVGCGNGS 102

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441303|ref|XP_003590929.1| Methyltransferase-like protein [Medicago truncatula] gi|355479977|gb|AES61180.1| Methyltransferase-like protein [Medicago truncatula]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 13/102 (12%)

Query: 5   SSAGAGEYHSKDFEWETLKQEIENDPSLQYHLLPYNSSPEAAQEAEKDSDAWKRFHSRHS 64
           S + A EY SKDFEWE L+ E+E++PSL++H   ++ S  + Q  E D  AWK+FH+RHS
Sbjct: 4   SESEAAEYFSKDFEWEELRSEVESNPSLRHHFQSFSHS--STQSPESDVQAWKQFHTRHS 61

Query: 65  SGKFFK--------FTAELSNCHEAALDAK---GNFGNGSLI 95
           SGKFFK        F   LS+ H  ++  K      GNGS I
Sbjct: 62  SGKFFKERRYLLKEFPQLLSSSHPNSIPQKLLEVGCGNGSTI 103

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218199482|gb|EEC81909.1| hypothetical protein OsI_25740 [Oryza sativa Indica Group]

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 10/101 (9%)

Query: 6   SAGAGEYHSKDFEWETLKQEIENDPSLQYHLLPYNSS---PEAAQEAEKDSDAWKRFHSR 62
           +A A EYH  DFEWE L+ E+E +P+  YHL P+ ++   PE        S+AW  FH R
Sbjct: 8   AAEAEEYHCHDFEWEDLRAEVEANPAFSYHLSPFPTTVGAPEKPPPPPPPSEAWTSFHRR 67

Query: 63  HSSGKFFKFT-------AELSNCHEAALDAKGNFGNGSLIA 96
           H+SGKFFK          EL N  ++A   +   GNGS + 
Sbjct: 68  HTSGKFFKERRYLLKEFPELLNSKDSAKVLEVGCGNGSTVV 108

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501340|ref|NP_001145279.1| uncharacterized protein LOC100278574 [Zea mays] gi|195654037|gb|ACG46486.1| hypothetical protein [Zea mays]

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 10 GEYHSKDFEWETLKQEIENDPSLQYHLLPY-NSSPEAAQEAEKDSDAWKRFHSRHSSGKF 68
           EYHS+DFEWE LK+E+E+ P   YHL P+ + +       +  S+AW+ FH RH+SGKF
Sbjct: 18 AEYHSRDFEWEDLKEEVESGPVFSYHLSPFLDPAASTTSPPQPSSEAWRSFHRRHASGKF 77

Query: 69 FK 70
          FK
Sbjct: 78 FK 79

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
KOG2361	264	consensus Predicted methyltransferase [General fun	99.78
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.57
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.42
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.38
PRK12335	287	tellurite resistance protein TehB; Provisional	98.33
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.26
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.24
PRK11207	197	tellurite resistance protein TehB; Provisional	98.22
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.21
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.21
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.2
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.14
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.09
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.08
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.07
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.06
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.06
PLN02244	340	tocopherol O-methyltransferase	98.05
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.03
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.99
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.97
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.96
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.93
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	97.91
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.9
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.89
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.88
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.86
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.84
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.84
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.81
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.81
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.81
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.8
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.8
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.8
PRK08317	241	hypothetical protein; Provisional	97.79
PRK05785	226	hypothetical protein; Provisional	97.79
PRK07402	196	precorrin-6B methylase; Provisional	97.77
PRK06202	232	hypothetical protein; Provisional	97.74
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.74
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.73
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.73
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.73
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.72
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.72
PRK04266	226	fibrillarin; Provisional	97.72
PRK14968	188	putative methyltransferase; Provisional	97.7
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.69
TIGR00438	188	rrmJ cell division protein FtsJ.	97.69
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.67
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.66
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.65
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.63
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.61
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.61
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.59
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.59
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.58
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.57
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	97.56
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.55
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.55
PLN02336	475	phosphoethanolamine N-methyltransferase	97.54
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.53
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	97.53
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.52
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.52
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.51
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.51
PRK06922	677	hypothetical protein; Provisional	97.5
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.49
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.48
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.47
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.47
PLN02336	475	phosphoethanolamine N-methyltransferase	97.46
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.44
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.41
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.39
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.37
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.36
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.35
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.34
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.33
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.33
PTZ00146	293	fibrillarin; Provisional	97.31
COG2890	280	HemK Methylase of polypeptide chain release factor	97.3
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.26
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.24
PLN02490	340	MPBQ/MSBQ methyltransferase	97.24
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.22
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.19
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.18
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.16
KOG3010	261	consensus Methyltransferase [General function pred	97.16
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.16
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.15
KOG1271	227	consensus Methyltransferases [General function pre	97.12
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.12
TIGR03438	301	probable methyltransferase. This model represents	97.12
PRK14967	223	putative methyltransferase; Provisional	97.12
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.1
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.1
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.09
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.05
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	96.99
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.92
TIGR00452	314	methyltransferase, putative. Known examples to dat	96.9
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.89
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.89
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.88
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.87
PHA03411	279	putative methyltransferase; Provisional	96.82
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.79
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.79
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.76
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.76
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.71
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	96.7
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.7
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	96.64
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.57
KOG4300	252	consensus Predicted methyltransferase [General fun	96.56
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.51
PRK04457	262	spermidine synthase; Provisional	96.5
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.35
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.34
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.32
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.32
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.29
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.24
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.21
COG4123	248	Predicted O-methyltransferase [General function pr	96.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.13
PHA03412	241	putative methyltransferase; Provisional	96.11
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.97
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.92
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	95.86
PLN02672	1082	methionine S-methyltransferase	95.84
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.75
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	95.69
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	95.64
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	95.63
PRK04148	134	hypothetical protein; Provisional	95.58
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	95.5
PLN03075	296	nicotianamine synthase; Provisional	95.49
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	95.46
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	95.33
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.23
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	95.18
PLN02476	278	O-methyltransferase	95.1
PRK00811	283	spermidine synthase; Provisional	95.06
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	95.03
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	95.0
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	94.9
KOG2904	328	consensus Predicted methyltransferase [General fun	94.87
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	94.71
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.59
PRK03612	521	spermidine synthase; Provisional	94.49
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	94.38
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.38
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	94.17
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	93.96
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	93.93
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	93.92
PRK01581	374	speE spermidine synthase; Validated	93.87
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	93.86
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	93.84
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	93.42
PF13679	141	Methyltransf_32: Methyltransferase domain	93.33
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	92.76
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	92.42
PLN02366	308	spermidine synthase	91.47
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	91.11
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	90.94
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	90.01
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	89.8
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	89.37
KOG2940	325	consensus Predicted methyltransferase [General fun	89.06
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	88.98
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	88.04
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	87.7
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	87.68
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	87.52
KOG2899	288	consensus Predicted methyltransferase [General fun	87.5
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	87.3
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	86.65
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	85.73
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	85.36
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	85.15
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	85.07
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	85.05
PLN02589	247	caffeoyl-CoA O-methyltransferase	85.0
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	84.68
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	84.48
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	83.22
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	82.55
KOG3115	249	consensus Methyltransferase-like protein [General	82.52
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	80.77
COG3897	218	Predicted methyltransferase [General function pred	80.65
COG4122	219	Predicted O-methyltransferase [General function pr	80.45

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.78  E-value=1.1e-19  Score=158.00  Aligned_cols=97  Identities=21%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             cchHHHHHHHhhcCCCCccccc-------ccccccCCCc--eeEeeccCCchhHHHhHHhhh---hheeeeeccc-----
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFT-------AELSNCHEAA--LDAKGNFGNGSLIADFSVVIK---MKILASLVDG-----  113 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdR-------PEL~~~~~~~--~vLEvGCG~Gnta~pll~~~~---~~i~AtD~s~-----  113 (178)
                      +++++||.||++|. ++|||||       |||..+....  +|||||||+|||++||++.++   ..++|.|.+.     
T Consensus        34 ~~~k~wD~fy~~~~-~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~  112 (264)
T KOG2361|consen   34 EASKYWDTFYKIHE-NRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL  112 (264)
T ss_pred             chhhhhhhhhhhcc-ccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence            57899999999997 7999999       9999887554  899999999999999999753   5789999772     


Q ss_pred             ---ccccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595          114 ---EYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus       114 ---k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                         ......-..-.|+.+-...++...+ +||+|+++||
T Consensus       113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen  113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             HHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence               2222223335666666654566666 8888888876

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.57  E-value=1.4e-07  Score=67.15  Aligned_cols=68  Identities=10%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             CCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------ccc-ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEY-YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~-~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      |..+|||+|||+|..++.++.. ...+++|+|.+        ++. ......|++|..+..  ...+...+..|+|++.+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA--EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC--HGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc--ccCcccCCCCCEEEECC
Confidence            4578999999999999999993 44689999977        233 234457899999777  22334455599999887

...

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.42  E-value=3.1e-07  Score=64.99  Aligned_cols=68  Identities=15%  Similarity=0.056  Sum_probs=36.4

Q ss_pred             EeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeehhh
Q 035595           85 AKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKS  152 (178)
Q Consensus        85 LEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl~~  152 (178)
                      ||||||+|+...+|+.. ...+++++|++        ++....+..++.+.........-...+++.|+|++.|.=.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            79999999999999998 23589999988        3334444444444443332111122237999999987543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.38  E-value=8.6e-07  Score=67.71  Aligned_cols=69  Identities=13%  Similarity=0.102  Sum_probs=52.9

Q ss_pred             CCceeEeeccCCchhHHHhHHh--hhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVV--IKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~--~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ...+|||+|||+|..++.|+..  ...+++++|.+        .++...+..|+.|.++... .++..+++..|+|+..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~-~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIE-DLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTT-CGCGCSSTTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehh-ccccccCCCeeEEEEcC
Confidence            4679999999999999999953  24579999977        3445678889999998776 35433558999998874

...

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.33  E-value=1.6e-07  Score=79.82  Aligned_cols=94  Identities=11%  Similarity=0.075  Sum_probs=63.7

Q ss_pred             ccchHHHHHHHhhcCCCCccccc------ccccc---cCCCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------
Q 035595           50 EKDSDAWKRFHSRHSSGKFFKFT------AELSN---CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG-------  113 (178)
Q Consensus        50 ~~~~~~Wd~Fy~rh~~~~FFKdR------PEL~~---~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~-------  113 (178)
                      +++...|..||.... ..|+|.+      +++..   ...+.+|||+|||+|..+++|+... .+++|+|.+.       
T Consensus        82 s~d~~~~l~fy~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~  159 (287)
T PRK12335         82 SDDLECQLSFYCKPE-DYFHKKYNLTATHSEVLEAVQTVKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQ  159 (287)
T ss_pred             CCCcEEEEEEEEcch-hhHhhhhccccccHHHHHHhhccCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHH
Confidence            356778888996664 5666765      23221   1245699999999999999999865 5899999872       


Q ss_pred             -ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595          114 -EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus       114 -k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                       ++...++ ++.+...... .  ..++++.|+|+...
T Consensus       160 ~~~~~~~l-~v~~~~~D~~-~--~~~~~~fD~I~~~~  192 (287)
T PRK12335        160 EIAEKENL-NIRTGLYDIN-S--ASIQEEYDFILSTV  192 (287)
T ss_pred             HHHHHcCC-ceEEEEechh-c--ccccCCccEEEEcc
Confidence             3344555 6777664433 1  22478899987653

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.26  E-value=2.7e-06  Score=60.85  Aligned_cols=69  Identities=10%  Similarity=0.052  Sum_probs=48.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||+|||+|..+..++... ..+++++|.+.        .....+..++.|........ .+..+++.|+|++.+
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-LEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-ChhhcCCCCEEEECC
Confidence            35689999999999999999864 35799999762        22344666788877544311 233456899999865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.24  E-value=2.9e-06  Score=72.20  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=61.8

Q ss_pred             hHHHHHHHhh---cCCCCccccc-----------cccccc---CCCceeEeeccCCch----hHHHhHHhh------hhh
Q 035595           53 SDAWKRFHSR---HSSGKFFKFT-----------AELSNC---HEAALDAKGNFGNGS----LIADFSVVI------KMK  105 (178)
Q Consensus        53 ~~~Wd~Fy~r---h~~~~FFKdR-----------PEL~~~---~~~~~vLEvGCG~Gn----ta~pll~~~------~~~  105 (178)
                      .+.|+.|...   |. ..||.|.           |+|...   .+..+|+++|||||-    .|+.|+...      ..+
T Consensus        56 ~~e~~~l~~~lti~~-T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~  134 (264)
T smart00138       56 EEELAELLDLMTTNE-TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK  134 (264)
T ss_pred             HHHHHHHHHHhhcCC-CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE
Confidence            4678888743   44 5899988           655432   245799999999996    455555432      247


Q ss_pred             eeeeecccc---cccCCC--------------------------------cceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595          106 ILASLVDGE---YYNNGH--------------------------------ENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus       106 i~AtD~s~k---~~~~g~--------------------------------~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      ++|||++..   .+..|+                                .++.|.+.+.. ..++ ..++.|+|+..|+
T Consensus       135 I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~-~~~~-~~~~fD~I~crnv  212 (264)
T smart00138      135 ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL-AESP-PLGDFDLIFCRNV  212 (264)
T ss_pred             EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC-CCCC-ccCCCCEEEechh
Confidence            999998821   112221                                25788887665 2222 3678999998775

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.22  E-value=2.5e-06  Score=69.00  Aligned_cols=75  Identities=11%  Similarity=0.021  Sum_probs=52.9

Q ss_pred             ccccccc---cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCC
Q 035595           71 FTAELSN---CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVS  139 (178)
Q Consensus        71 dRPEL~~---~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~  139 (178)
                      -+|+|..   ..+..+|||+|||+|..++.|+... .+++|+|.+        ++....++.|+.+...... ..+  ++
T Consensus        18 ~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~-~~~--~~   93 (197)
T PRK11207         18 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN-NLT--FD   93 (197)
T ss_pred             ChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh-hCC--cC
Confidence            3355543   2356899999999999999999875 489999987        2344567777888775543 222  35


Q ss_pred             CCcceEeeee
Q 035595          140 GSQNYVILAN  149 (178)
Q Consensus       140 ~s~~~vil~n  149 (178)
                      ++.|+|+..+
T Consensus        94 ~~fD~I~~~~  103 (197)
T PRK11207         94 GEYDFILSTV  103 (197)
T ss_pred             CCcCEEEEec
Confidence            7799887654

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.21  E-value=3.9e-06  Score=70.99  Aligned_cols=71  Identities=10%  Similarity=-0.017  Sum_probs=50.5

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------c---ccCCCcceEEEEcccccCCCCCCCCCcc
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------Y---YNNGHENFSFLVDGEYYSNCPAVSGSQN  143 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~  143 (178)
                      ...+..+|||+|||||..+.+|+...  ..+++|+|++..        .   ...+..|+.|..+... .+|- -.++.|
T Consensus        70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~-~lp~-~~~sfD  147 (261)
T PLN02233         70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT-DLPF-DDCYFD  147 (261)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc-cCCC-CCCCEe
Confidence            33567899999999999999998764  247999998821        1   1224568999987764 4431 156899


Q ss_pred             eEeeee
Q 035595          144 YVILAN  149 (178)
Q Consensus       144 ~vil~n  149 (178)
                      +|++..
T Consensus       148 ~V~~~~  153 (261)
T PLN02233        148 AITMGY  153 (261)
T ss_pred             EEEEec
Confidence            998753

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.21  E-value=1.5e-06  Score=70.67  Aligned_cols=69  Identities=16%  Similarity=0.279  Sum_probs=51.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      +..+|||+|||+|..++.|+... ...++++|.+        ++....+..|+.|.++.....++..+ +++.|+|++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            46789999999999999998764 3479999987        23344567789999977622444445 6789988863

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.20  E-value=1.5e-06  Score=72.11  Aligned_cols=69  Identities=7%  Similarity=0.107  Sum_probs=50.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      .+.+|||+|||+|..+..|+... .+++++|++        ++....|. .+++|..+... .+++-.+++.|+|++.+.
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~-~l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ-DIAQHLETPVDLILFHAV  121 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHH-HHhhhcCCCCCEEEehhH
Confidence            45799999999999999999876 489999987        23333454 46888887664 344444678899987653

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.14  E-value=5.9e-06  Score=55.93  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=43.9

Q ss_pred             EeeccCCchhHHHhHHhhhhheeeeecccc-----cccCCCcceEEEEcccccCCCCCCCCCcceEeeeehhh
Q 035595           85 AKGNFGNGSLIADFSVVIKMKILASLVDGE-----YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLKS  152 (178)
Q Consensus        85 LEvGCG~Gnta~pll~~~~~~i~AtD~s~k-----~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl~~  152 (178)
                      ||+|||+|.++..|+..-...++++|.+..     .......++.|...... .+ |--++|.|+|++.+.-.
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~-~l-~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAE-DL-PFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTT-SS-SS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHH-hC-cccccccccccccccee
Confidence            899999999999999993359999998722     11122344567776654 44 22278999999987643

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.09  E-value=8.8e-06  Score=65.59  Aligned_cols=68  Identities=9%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..+..++...  ..+++++|++        ++....+..+++|..+... .++. -+++.|+|++.
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~-~~~~fD~V~~~  121 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAM-ELPF-DDNSFDYVTIG  121 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechh-cCCC-CCCCccEEEEe
Confidence            456899999999999999999864  3489999987        2334456678888887664 2321 15688998864

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.08  E-value=6.5e-06  Score=67.48  Aligned_cols=66  Identities=9%  Similarity=-0.080  Sum_probs=51.1

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ..+|||+|||+|..++.++... ..+++++|.+        ++....+..|+.|..+... ..++  +++.|+|+.-.
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~-~~~~--~~~fDlV~~~~  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAE-EFGQ--EEKFDVVTSRA  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHh-hCCC--CCCccEEEEcc
Confidence            6789999999999999998642 4589999977        3445667778999988765 3443  67899998744

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.07  E-value=6.8e-06  Score=66.38  Aligned_cols=65  Identities=17%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..++.... +++++|++        ++....+. .++.|..+... .++    ++.|+|+..+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~~~----~~fD~ii~~~  127 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL-SLC----GEFDIVVCMD  127 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh-hCC----CCcCEEEEhh
Confidence            3568999999999999999988754 89999987        22222333 47888886654 322    6788887644

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.06  E-value=4.4e-06  Score=67.46  Aligned_cols=64  Identities=8%  Similarity=-0.045  Sum_probs=43.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ++.+|||+|||+|..+.+|+... ..++|+|++.        ++...++. +.+...... .  ..++++.|+|+..
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~-~--~~~~~~fD~I~~~  101 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP-LRTDAYDIN-A--AALNEDYDFIFST  101 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccch-h--ccccCCCCEEEEe
Confidence            46799999999999999999865 5899999872        22333443 555443332 1  1245678988754

Part of a tellurite-reducing operon tehA and tehB

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.06  E-value=6.4e-06  Score=66.61  Aligned_cols=66  Identities=8%  Similarity=-0.073  Sum_probs=48.6

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ..+|||+|||+|..++.++... ..+++|+|.+.        .....|..|+.|..+... .++  ..++.|+|+...
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~--~~~~fD~I~s~~  117 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQ--HEEQFDVITSRA  117 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hcc--ccCCccEEEehh
Confidence            6799999999999999988643 34799999873        233457778999887764 232  257899876643

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02244 tocopherol O-methyltransferase

Probab=98.05  E-value=1.2e-05  Score=70.51  Aligned_cols=68  Identities=12%  Similarity=0.024  Sum_probs=49.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCC-cceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||||||+|.++..|+.....+++++|++.        ++...|. .++.|..++.. .+| --.++.|+|+..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~-~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQP-FEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCC-CCCCCccEEEEC
Confidence            35678999999999999999986555899999872        2333455 46999987664 232 125788988764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.03  E-value=1.3e-05  Score=65.14  Aligned_cols=70  Identities=10%  Similarity=0.023  Sum_probs=50.1

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ...+..+|||||||+|..+..|+....  .+++++|++        ++....|..|+.|..+......+.  .+..|+++
T Consensus        74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~--~~~fD~Ii  151 (215)
T TIGR00080        74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP--LAPYDRIY  151 (215)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc--cCCCCEEE
Confidence            335678999999999999998888764  248999976        344556788899998665422221  35678777


Q ss_pred             ee
Q 035595          147 LA  148 (178)
Q Consensus       147 l~  148 (178)
                      +-
T Consensus       152 ~~  153 (215)
T TIGR00080       152 VT  153 (215)
T ss_pred             Ec
Confidence            54

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.00  E-value=8.4e-06  Score=68.76  Aligned_cols=70  Identities=11%  Similarity=0.099  Sum_probs=45.2

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ...+..+||++|||||..++.|+...  ..+++++|++        +|....+..|++|.++.+. .+|- -..|.|+|+
T Consensus        44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~-~lp~-~d~sfD~v~  121 (233)
T PF01209_consen   44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAE-DLPF-PDNSFDAVT  121 (233)
T ss_dssp             T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTT-B--S--TT-EEEEE
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHH-HhcC-CCCceeEEE
Confidence            34567899999999999999999864  3589999977        5666777889999998775 3441 158999998


Q ss_pred             ee
Q 035595          147 LA  148 (178)
Q Consensus       147 l~  148 (178)
                      +.
T Consensus       122 ~~  123 (233)
T PF01209_consen  122 CS  123 (233)
T ss_dssp             EE
T ss_pred             HH
Confidence            54

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.99  E-value=5.6e-06  Score=66.64  Aligned_cols=65  Identities=18%  Similarity=0.223  Sum_probs=47.5

Q ss_pred             ceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCC-C-CCCcceEee
Q 035595           82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPA-V-SGSQNYVIL  147 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~-~-~~s~~~vil  147 (178)
                      .+|||||||+|..++.++... ...++++|++        +++...|..|+.|.++... .+++. + .+++|.+++
T Consensus        18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~-~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDAN-ELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHH-HHHHhhCCCCceeEEEE
Confidence            479999999999999999864 4588999976        3344567789999988774 22222 2 347886654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.97  E-value=1.4e-05  Score=63.87  Aligned_cols=65  Identities=20%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+.... .++++|++        ++....+. .++.|..+...     ...++.|+|+..+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-----~~~~~fD~v~~~~  135 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE-----SLLGRFDTVVCLD  135 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-----hccCCcCEEEEcc
Confidence            3567999999999999999998754 69999977        22233444 46888876521     1246778776644

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.96  E-value=1.8e-05  Score=68.16  Aligned_cols=66  Identities=12%  Similarity=0.135  Sum_probs=54.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      .+..+|||||||||..++-++..+ .-+++++|++        +|+.+.|..++.|+.+++. .||  + ..|-|+|.+
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe-~LP--f~D~sFD~vt~  125 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAE-NLP--FPDNSFDAVTI  125 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechh-hCC--CCCCccCEEEe
Confidence            368999999999999999999977 3489999977        7777888888999999986 566  5 567777765

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.93  E-value=2.9e-05  Score=62.59  Aligned_cols=69  Identities=9%  Similarity=0.036  Sum_probs=49.2

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ..+..+|||+|||+|..+..++.... +++++|.+        ++....|..|++|..+......++  .+..|++++-+
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~I~~~~  152 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA--YAPFDRILVTA  152 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc--CCCcCEEEEcc
Confidence            34678999999999999887776654 78999966        333445778899888765423322  36788888754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=97.91  E-value=1.6e-05  Score=65.93  Aligned_cols=68  Identities=13%  Similarity=-0.018  Sum_probs=47.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..+++++|++...- .+.-.+++|..+... .+++  .++.|+|+..+
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~~--~~~fD~v~~~~   97 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVR-DWKP--KPDTDVVVSNA   97 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChh-hCCC--CCCceEEEEeh
Confidence            456899999999999999998863 35899999983221 111136788886654 3432  46889888754

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.90  E-value=1.7e-05  Score=65.31  Aligned_cols=68  Identities=10%  Similarity=0.025  Sum_probs=46.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ...++|+|++..+   +.....++.|..+... .  |--.++.|+|+..+
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~-~--~~~~~sfD~V~~~~  113 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLF-D--PFKDNFFDLVLTKG  113 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeecc-C--CCCCCCEEEEEECC
Confidence            356789999999999999998862 3589999988332   1122334666665443 2  33367899998655

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.89  E-value=2.7e-05  Score=61.61  Aligned_cols=67  Identities=13%  Similarity=0.171  Sum_probs=48.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..++.++... ..+++++|++.        .....+..++.|..+...    ..++++.|++++.+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~----~~~~~~~D~v~~~~  105 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP----IELPGKADAIFIGG  105 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch----hhcCcCCCEEEECC
Confidence            466799999999999999998864 35899999872        222345567888775432    23467889998754

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.88  E-value=8.4e-06  Score=58.31  Aligned_cols=64  Identities=11%  Similarity=0.192  Sum_probs=43.0

Q ss_pred             eEeeccCCchhHHHhHHhh----hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           84 DAKGNFGNGSLIADFSVVI----KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        84 vLEvGCG~Gnta~pll~~~----~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      |||+|||+|..+..++...    ...++++|++        ++....+. +++|.++... .++ ...+..|+|+..++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~-~l~-~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADAR-DLP-FSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTT-CHH-HHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHh-HCc-ccCCCeeEEEEcCC
Confidence            7999999999999999874    2589999977        22233344 7899887774 232 23568888888543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.86  E-value=3.9e-05  Score=62.98  Aligned_cols=69  Identities=12%  Similarity=0.055  Sum_probs=49.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||||||+|..+..|+....  -+++++|++        ++....|..|++|..+......++  .+..|++++.
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~--~~~fD~I~~~  152 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE--NAPYDRIYVT  152 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc--CCCcCEEEEC
Confidence            4678999999999999988887642  378999977        344455778899998776422222  2567887765


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      .
T Consensus       153 ~  153 (212)
T PRK13942        153 A  153 (212)
T ss_pred             C
Confidence            4

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.84  E-value=1.5e-05  Score=68.96  Aligned_cols=66  Identities=11%  Similarity=-0.026  Sum_probs=47.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..+++++.... +++|+|++        +.+...|+.|++|.+.... ...+...+..|+||+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~-~~~~~~~~~~D~Vv~  246 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDST-QFATAQGEVPDLVLV  246 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHH-HHHHhcCCCCeEEEE
Confidence            457999999999999999998764 89999977        3334567778999987663 222222334576654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.84  E-value=3e-05  Score=65.28  Aligned_cols=67  Identities=12%  Similarity=0.049  Sum_probs=45.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh----hheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK----MKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~----~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ...+|||+|||+|..+..|+....    ..++++|++...   +.....++.|.++... .+| --.++.|+|+-+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~-~lp-~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH-RLP-FADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc-cCC-CcCCceeEEEEe
Confidence            457899999999999998887542    257999988322   2223457888886654 343 115688888753

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.81  E-value=9e-06  Score=60.38  Aligned_cols=66  Identities=14%  Similarity=0.108  Sum_probs=42.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|.++..+..... .++++|.+......  .++.+......  .++-.+++.|+|+..+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--~~~~~~~~~~~--~~~~~~~~fD~i~~~~   86 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--RNVVFDNFDAQ--DPPFPDGSFDLIICND   86 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--TTSEEEEEECH--THHCHSSSEEEEEEES
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--hhhhhhhhhhh--hhhccccchhhHhhHH
Confidence            5678999999999999999966654 89999998544332  33344433211  1112256777777654

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.81  E-value=3.3e-05  Score=64.38  Aligned_cols=64  Identities=9%  Similarity=-0.082  Sum_probs=43.5

Q ss_pred             CCceeEeeccCCchhHHHhHHh---hhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVV---IKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~---~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||||||+|..+..|+..   ...+++++|.+        ++....+.. +++|..+... .+|.   ++.|++|+
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~-~~~~---~~~D~vv~  131 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR-DIAI---ENASMVVL  131 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh-hCCC---CCCCEEeh
Confidence            5578999999999999998873   24589999987        233333333 6888876654 3332   34677664

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.81  E-value=3.9e-05  Score=63.10  Aligned_cols=67  Identities=9%  Similarity=-0.015  Sum_probs=46.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc---cccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE---YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k---~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||||||+|..+..|+... ..+++++|.+..   .+.....++.|..+... .+.+  +++.|+|+..
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~-~~~~--~~~fD~v~~~  100 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIA-SWQP--PQALDLIFAN  100 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchh-ccCC--CCCccEEEEc
Confidence            456899999999999999999864 358999998832   22334557888776553 2221  3477777644

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.80  E-value=2.6e-05  Score=71.54  Aligned_cols=67  Identities=9%  Similarity=0.011  Sum_probs=51.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      ....+||||||+|..++.++... ...++|+|++        .++...|..|+.+.++.+.. +...+ ++++|.|.+
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~-ll~~~~~~s~D~I~l  198 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL-LLELLPSNSVEKIFV  198 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH-hhhhCCCCceeEEEE
Confidence            34589999999999999999875 4578999976        55667789999999987742 21224 678888875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.80  E-value=5.7e-05  Score=61.44  Aligned_cols=70  Identities=10%  Similarity=-0.060  Sum_probs=47.6

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEe
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ..+..+|||+|||+|..+..++...  ..+++++|++        ++....|.. ++.|..+.....++.  .++.|+++
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~--~~~fD~Ii  147 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK--HAPFDAII  147 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--CCCccEEE
Confidence            3466899999999999998888764  2478999977        233345554 488888655423332  35778776


Q ss_pred             eee
Q 035595          147 LAN  149 (178)
Q Consensus       147 l~n  149 (178)
                      +..
T Consensus       148 ~~~  150 (205)
T PRK13944        148 VTA  150 (205)
T ss_pred             Ecc
Confidence            553

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.80  E-value=4e-05  Score=65.24  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=45.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccC-----CCcceEEEEcccccCCC-CCCCCCcceEeeeeh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNN-----GHENFSFLVDGEYYSNC-PAVSGSQNYVILANL  150 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~-----g~~N~~F~~~~~~~s~~-p~~~~s~~~vil~nl  150 (178)
                      .+..+|||+|||+|..+..|+.... +++|+|++.+..+.     ...++.+..++.. .++ +.+.   ..+|+.||
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~-~~~~~~~~---~~~vv~Nl  113 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDAL-KVDLSELQ---PLKVVANL  113 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhh-cCCHHHcC---cceEEEeC
Confidence            4567999999999999999999875 89999988222110     1157888887664 222 1111   35666776

>PRK08317 hypothetical protein; Provisional

Probab=97.79  E-value=7.3e-05  Score=58.64  Aligned_cols=72  Identities=10%  Similarity=-0.003  Sum_probs=49.2

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccccc-------ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEY-------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~-------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ...+..+|||+|||+|..+..++...  ..+++++|.+...       ......++.|..+... ..+ ..++..|+|++
T Consensus        16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~v~~   93 (241)
T PRK08317         16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLP-FPDGSFDAVRS   93 (241)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCC-CCCCCceEEEE
Confidence            33567899999999999999998764  3478999987321       1223457888886553 222 22578899887


Q ss_pred             eeh
Q 035595          148 ANL  150 (178)
Q Consensus       148 ~nl  150 (178)
                      .++
T Consensus        94 ~~~   96 (241)
T PRK08317         94 DRV   96 (241)
T ss_pred             ech
Confidence            653

>PRK05785 hypothetical protein; Provisional

Probab=97.79  E-value=2.2e-05  Score=65.25  Aligned_cols=67  Identities=15%  Similarity=-0.017  Sum_probs=43.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      +..+|||||||||..+..|+.....+++++|.+...-+.+.....+.++... .+| --.++.|+|+..
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~-~lp-~~d~sfD~v~~~  117 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFE-ALP-FRDKSFDVVMSS  117 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechh-hCC-CCCCCEEEEEec
Confidence            4679999999999999998876434899999884321111112234444333 332 226788888854

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.77  E-value=5e-05  Score=60.69  Aligned_cols=52  Identities=13%  Similarity=0.142  Sum_probs=39.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      .+..+|||+|||+|..++.++... ..+++++|.+        ++....|..|+.|..+..
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~   99 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA   99 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence            456899999999999999998653 3489999987        223345677888887654

>PRK06202 hypothetical protein; Provisional

Probab=97.74  E-value=7.3e-05  Score=61.06  Aligned_cols=68  Identities=13%  Similarity=0.021  Sum_probs=43.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-----hhheeeeeccccc----cc-CCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-----KMKILASLVDGEY----YN-NGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-----~~~i~AtD~s~k~----~~-~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..+..|+...     ..+++|+|.+...    .. .+..++.|...... .++ .-+++.|+|+..
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~l~-~~~~~fD~V~~~  136 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSD-ELV-AEGERFDVVTSN  136 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecc-ccc-ccCCCccEEEEC
Confidence            456799999999999999888643     2379999987221    11 12234666654332 122 135788988765

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.74  E-value=4.7e-05  Score=60.78  Aligned_cols=68  Identities=7%  Similarity=-0.078  Sum_probs=47.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ...+|||+|||+|..+..++.... .++++|.+.        +....+..++.|..+... ..+...+++.|+|++.+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~D~i~~~~  120 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVE-DLAEKGAKSFDVVTCME  120 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHH-HhhcCCCCCccEEEehh
Confidence            367899999999999999887654 689999773        222345556888776553 22322257889887653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.73  E-value=2.4e-05  Score=64.25  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             eeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595           83 LDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVI  146 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vi  146 (178)
                      .+||||||.|..++-++... ...++++|++        +++...+..|+.|.++++...+.--+ ++|++-+.
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIY   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEE
Confidence            78999999999999999864 5578999966        66677799999999988753333223 46665544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.73  E-value=7.3e-05  Score=58.57  Aligned_cols=52  Identities=12%  Similarity=0.132  Sum_probs=38.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc------CCCcceEEEEcccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN------NGHENFSFLVDGEY  131 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~------~g~~N~~F~~~~~~  131 (178)
                      .+..+|||+|||+|..+..++... .+++|+|++.+...      .+..|+++..+...
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~   69 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDAL   69 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchh
Confidence            355789999999999999999885 48999998732211      12457888887664

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.73  E-value=9.1e-05  Score=58.51  Aligned_cols=65  Identities=14%  Similarity=0.123  Sum_probs=46.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ...+|||+|||+|-.++-++.... ..++++|++        .....++..++.+..++.....+   .+..|++|.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~---~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP---DGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---TTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---ccceeEEEE
Confidence            567899999999999999998753 269999987        33455677777787766542222   466676554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.72  E-value=4.2e-05  Score=69.22  Aligned_cols=68  Identities=13%  Similarity=0.046  Sum_probs=48.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCC-CC-CCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCP-AV-SGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p-~~-~~s~~~vil  147 (178)
                      .+..+|||+|||+|..+++|+.... +++|+|++        +.+...|..|+.|..+.....+.. .+ .++.|+||+
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~  373 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL  373 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence            4567999999999999999998874 89999977        333445778899998876422211 02 345677664

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.72  E-value=4.2e-05  Score=61.00  Aligned_cols=70  Identities=14%  Similarity=0.048  Sum_probs=44.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||+|||+|..+..++.......+++|++...- .....++.|........+++--+++.|+|++.+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~   83 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQ   83 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence            4578999999999998888765444668899873321 111235677665543223332257889888643

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK04266 fibrillarin; Provisional

Probab=97.72  E-value=6.6e-05  Score=63.20  Aligned_cols=69  Identities=7%  Similarity=0.032  Sum_probs=48.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc----c--ccCCCcceEEEEcccccCC-CCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE----Y--YNNGHENFSFLVDGEYYSN-CPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k----~--~~~g~~N~~F~~~~~~~s~-~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|.+.+.|+..+ ...++|+|++..    .  ...+..|+.+..+...... ...+++++|+++.
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence            467899999999999999999876 347999998842    1  1122368888876654211 1345677998874

>PRK14968 putative methyltransferase; Provisional

Probab=97.70  E-value=8.3e-05  Score=57.21  Aligned_cols=64  Identities=8%  Similarity=-0.013  Sum_probs=43.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcc--eEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHEN--FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N--~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|.++..++... .+++++|++...        ...+..+  +.|..+.....+   .+++.|+||.
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~d~vi~   96 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---RGDKFDVILF   96 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---cccCceEEEE
Confidence            45689999999999999999884 589999987322        2223333  677765543221   2346777764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.69  E-value=9.7e-05  Score=61.53  Aligned_cols=67  Identities=13%  Similarity=0.010  Sum_probs=46.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      .+..+||++|||+|..++-++...  ..+++++|++        +.....|..+++|...... .++  + .++.|+|+.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~-~l~--~~~~~fD~Vi~  152 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIE-ALP--VADNSVDVIIS  152 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchh-hCC--CCCCceeEEEE
Confidence            466899999999999888776653  2368999976        2223456778898886553 333  3 468898875


Q ss_pred             e
Q 035595          148 A  148 (178)
Q Consensus       148 ~  148 (178)
                      .
T Consensus       153 ~  153 (272)
T PRK11873        153 N  153 (272)
T ss_pred             c
Confidence            4

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.69  E-value=0.00011  Score=58.41  Aligned_cols=65  Identities=11%  Similarity=-0.017  Sum_probs=44.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh--hheeeeecccccccCCCcceEEEEcccccCCC------CCC-CCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVDGEYYNNGHENFSFLVDGEYYSNC------PAV-SGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~------p~~-~~s~~~vil  147 (178)
                      .+..+|||+|||+|....-++....  .+++++|++...   +..++.|...... ..+      ..+ .++.|+|+.
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~~-~~~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDFT-DEEVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeCC-ChhHHHHHHHHhCCCCccEEEc
Confidence            4568999999999999888887642  369999999643   3456777765432 111      012 456888875

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.67  E-value=0.00015  Score=57.47  Aligned_cols=68  Identities=13%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCC-CcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNG-HENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|.++..++...  ..+++++|.+.        +....+ ..++.|...... ..+ --+++.|+|++
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~I~~  127 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALP-FPDNSFDAVTI  127 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCC-CCCCCccEEEE
Confidence            356899999999999999998865  35899999762        211211 245788776553 222 12567898876


Q ss_pred             e
Q 035595          148 A  148 (178)
Q Consensus       148 ~  148 (178)
                      .
T Consensus       128 ~  128 (239)
T PRK00216        128 A  128 (239)
T ss_pred             e
Confidence            4

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.66  E-value=8.6e-05  Score=59.69  Aligned_cols=68  Identities=13%  Similarity=0.137  Sum_probs=48.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCC-CcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNG-HENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..++.++...  ..+++++|++.        +....| ..|+.|...... ...+.+.+..|.|++
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~-~~l~~~~~~~D~V~~  117 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP-EILFTINEKFDRIFI  117 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh-hhHhhcCCCCCEEEE
Confidence            466899999999999999987653  34899999872        222345 467888775543 223445567898887

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.65  E-value=9e-05  Score=48.62  Aligned_cols=67  Identities=12%  Similarity=-0.018  Sum_probs=45.4

Q ss_pred             eeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           83 LDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      +|||+|||+|.....++.....+++++|.+...        ...+..++.|...+.... ..-..++.|++++.+.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL-PPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhh-ccccCCceEEEEEccc
Confidence            489999999999999998444589999977322        234556788877555322 2212567888777654

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.63  E-value=4.1e-05  Score=68.54  Aligned_cols=67  Identities=16%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC---CCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV---SGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~---~~s~~~vil  147 (178)
                      .+..+|||+|||+|+.+++|+...+ +++|+|++        +.+...|+.|+.|..+....-++ .+   .++.|+||+
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~-~~~~~~~~~D~vi~  368 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLP-KQPWAGQIPDVLLL  368 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHH-HHHhcCCCCCEEEE
Confidence            3557999999999999999998875 89999976        33445678899999977642222 22   235677664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.61  E-value=8.5e-05  Score=61.06  Aligned_cols=65  Identities=8%  Similarity=-0.073  Sum_probs=41.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..+..|.... ..++++|++...   +........|..+... .+| --.++.|+|+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~-~~~-~~~~~fD~V~s  109 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIE-SLP-LATATFDLAWS  109 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcc-cCc-CCCCcEEEEEE
Confidence            46789999999999888887654 489999988322   1111223456655443 333 11467888764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.61  E-value=0.00013  Score=61.47  Aligned_cols=65  Identities=14%  Similarity=0.137  Sum_probs=44.9

Q ss_pred             CCccccc---ccc---cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc------cCCCcceEEEEcccc
Q 035595           66 GKFFKFT---AEL---SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY------NNGHENFSFLVDGEY  131 (178)
Q Consensus        66 ~~FFKdR---PEL---~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~------~~g~~N~~F~~~~~~  131 (178)
                      .||-.|+   ..+   +...+..+|||||||+|.....|+.... +++++|++.+..      .....|+.+..++..
T Consensus         9 Qnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~   85 (258)
T PRK14896          9 QHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDAL   85 (258)
T ss_pred             ccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccc
Confidence            3576776   222   2234568999999999999999999864 899999872211      112457888886664

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.59  E-value=0.00012  Score=61.12  Aligned_cols=69  Identities=16%  Similarity=0.090  Sum_probs=46.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc------cCCCcceEEEEcccccCCCCC-CCCCcceEeeeehh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY------NNGHENFSFLVDGEYYSNCPA-VSGSQNYVILANLK  151 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~------~~g~~N~~F~~~~~~~s~~p~-~~~s~~~vil~nl~  151 (178)
                      .+..+|||+|||+|.....|+.... .++++|.+....      .....|+.+..+... ..+.. ..  .+++|+.||-
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~-~~~~~~~d--~~~~vvsNlP  103 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDAL-KVDLPDFP--KQLKVVSNLP  103 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchh-cCChhHcC--CcceEEEcCC
Confidence            4568999999999999999998875 799999772221      111457777776664 22221 11  1267788874

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.59  E-value=9.4e-05  Score=64.70  Aligned_cols=65  Identities=15%  Similarity=0.190  Sum_probs=45.4

Q ss_pred             CCccccc---c---cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------cccCC-CcceEEEEccc
Q 035595           66 GKFFKFT---A---ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYNNG-HENFSFLVDGE  130 (178)
Q Consensus        66 ~~FFKdR---P---EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~~g-~~N~~F~~~~~  130 (178)
                      .||..|.   .   +.....+..+|||||||+|.....|+.... +++|+|++.+        ....+ ..|+++..++.
T Consensus        16 QnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da   94 (294)
T PTZ00338         16 QHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA   94 (294)
T ss_pred             ccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            3566665   1   222334678999999999999999998764 8999998732        22223 46788888766


Q ss_pred             c
Q 035595          131 Y  131 (178)
Q Consensus       131 ~  131 (178)
                      .
T Consensus        95 l   95 (294)
T PTZ00338         95 L   95 (294)
T ss_pred             h
Confidence            3

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.58  E-value=0.00012  Score=59.02  Aligned_cols=64  Identities=13%  Similarity=0.125  Sum_probs=46.1

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..+|||+|||+|..+..++... ...++++|++.        .....+..|+.|..+.....++   .++.|+||.
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~fD~Vi~  160 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP---GGKFDLIVS  160 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc---CCceeEEEE
Confidence            4589999999999999999864 34889999772        2234566678888876642221   467787764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.57  E-value=0.00012  Score=64.24  Aligned_cols=67  Identities=10%  Similarity=-0.075  Sum_probs=47.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccc------cccC--C-CcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE------YYNN--G-HENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k------~~~~--g-~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ...+|||||||+|..++.++......++++|.+..      +...  + ..++.|...+.. .+|.  +++.|+|+..+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e-~lp~--~~~FD~V~s~~  197 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIE-QLPA--LKAFDTVFSMG  197 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHH-HCCC--cCCcCEEEECC
Confidence            45799999999999999999875446999997732      1111  1 347888886654 4544  67889988654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=97.56  E-value=9.2e-05  Score=65.67  Aligned_cols=67  Identities=9%  Similarity=-0.026  Sum_probs=47.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCC-CcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNG-HENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..+.+|+... ..++++|.+.+.        ...+ ..++.|..+... .++. -.++.|+|+..+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~-~~~~FD~Vi~~~  206 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLAD-EGRKFDAVLSLE  206 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-Hhhh-ccCCCCEEEEhh
Confidence            45689999999999999998754 489999987221        1112 247888886654 3432 257899998765

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.55  E-value=0.00018  Score=59.26  Aligned_cols=65  Identities=11%  Similarity=-0.034  Sum_probs=45.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccccccCCCcceEEEEcccccCCC-------CCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEYYNNGHENFSFLVDGEYYSNC-------PAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~-------p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|.....++...  ...++|+|++.-   .+..++.|.++... ...       +--++++|+|+-
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---~~~~~v~~i~~D~~-~~~~~~~i~~~~~~~~~D~V~S  123 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---DPIVGVDFLQGDFR-DELVLKALLERVGDSKVQVVMS  123 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---cCCCCcEEEecCCC-ChHHHHHHHHHhCCCCCCEEec
Confidence            356789999999999999999875  247999999852   23456777776543 111       112577888774

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.55  E-value=0.00016  Score=57.09  Aligned_cols=67  Identities=13%  Similarity=0.066  Sum_probs=44.4

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeeccccc----ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY----YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~----~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +.+|||+|||+|.....++... ..+++++|.+...    ......|+.|..+... ..+ --+++.|+||..+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~vi~~~  106 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAE-KLP-LEDSSFDLIVSNL  106 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchh-hCC-CCCCceeEEEEhh
Confidence            4789999999999999888764 3467999987221    1111136788775543 222 1256789988653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.54  E-value=0.00017  Score=64.92  Aligned_cols=69  Identities=13%  Similarity=0.093  Sum_probs=47.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..+..|+.... +++++|.+.+.      ......|+.|..........|--.++.|+|+...
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~  111 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW  111 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhh
Confidence            456899999999999999998765 89999977322      2223467888886653111111146889888754

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.53  E-value=0.0002  Score=60.74  Aligned_cols=69  Identities=7%  Similarity=-0.021  Sum_probs=47.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----c--cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----Y--NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~--~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+.....+++++|++...    .  .....++.|...... ..| --+++.|+|+..+
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~-~~~~~FD~V~s~~  125 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKD-FPENTFDMIYSRD  125 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCC-CCCCCeEEEEEhh
Confidence            4678999999999999999987654589999987211    1  112346888876553 221 1146889988743

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=97.53  E-value=0.00016  Score=57.99  Aligned_cols=65  Identities=9%  Similarity=0.050  Sum_probs=43.9

Q ss_pred             ceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+|||||||+|..+..++... ...++++|++.        +....|.. ++.|...... ..|  ++++.|+|+..+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~-~~~--~~~~fD~I~~~~   75 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA-KDP--FPDTYDLVFGFE   75 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc-cCC--CCCCCCEeehHH
Confidence            369999999999999998764 34788999772        22233333 4777775542 122  256899988654

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.52  E-value=0.00018  Score=56.58  Aligned_cols=62  Identities=13%  Similarity=0.092  Sum_probs=42.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------cccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++.... +++++|.+..        ....+. ++.|..+....    .+.++.|+|+.
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~fD~Vi~   88 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFK----GVRGKFDVILF   88 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccc----ccCCcccEEEE
Confidence            346899999999999999998765 8999997722        222333 46776655431    22457787764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.52  E-value=8.9e-05  Score=66.08  Aligned_cols=51  Identities=12%  Similarity=-0.041  Sum_probs=40.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      +..+|||+|||+|+.+++++... ..++++|++        +.+...|..|++|..+...
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~  291 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSA  291 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHH
Confidence            34689999999999999999766 489999977        3334567778999887764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.51  E-value=0.00019  Score=64.90  Aligned_cols=69  Identities=7%  Similarity=-0.013  Sum_probs=50.0

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..+..+|||+|||+|..++.++...  ..+++|+|++        +.....|+.|+.|..++.. .+++.++++.|+|++
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~-~~~~~~~~~fD~Vl~  326 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR-KVHEKFAEKFDKILV  326 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc-cccchhcccCCEEEE
Confidence            3456799999999999999999864  4589999987        2334567788888887654 233334466777654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.51  E-value=0.00016  Score=63.98  Aligned_cols=63  Identities=16%  Similarity=0.082  Sum_probs=43.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccC-----CCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNN-----GHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~-----g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      +..+|||||||+|..++.|+... ..++++|++.        ++...     +..++.|......     .+.++.|+|+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~-----~l~~~fD~Vv  217 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE-----SLSGKYDTVT  217 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh-----hcCCCcCEEE
Confidence            45799999999999999999875 4899999882        22221     2346778765432     2356778776


Q ss_pred             ee
Q 035595          147 LA  148 (178)
Q Consensus       147 l~  148 (178)
                      +.
T Consensus       218 ~~  219 (315)
T PLN02585        218 CL  219 (315)
T ss_pred             Ec
Confidence            43

>PRK06922 hypothetical protein; Provisional

Probab=97.50  E-value=0.0001  Score=71.92  Aligned_cols=93  Identities=10%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             HHHHHHHhhcC-CCCccccc------c-------cccccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc----
Q 035595           54 DAWKRFHSRHS-SGKFFKFT------A-------ELSNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE----  114 (178)
Q Consensus        54 ~~Wd~Fy~rh~-~~~FFKdR------P-------EL~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k----  114 (178)
                      ..||-|.++.. -++|.+..      +       ++..-.+..+|||+|||+|.++..|+... ...++|+|++..    
T Consensus       378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~  457 (677)
T PRK06922        378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT  457 (677)
T ss_pred             HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence            56777666532 34666433      1       12222356899999999999988888753 458999998832    


Q ss_pred             ----cccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595          115 ----YYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus       115 ----~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                          ....+ .++.+.++... .+|..+ +++.|+|+..
T Consensus       458 Ararl~~~g-~~ie~I~gDa~-dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        458 LKKKKQNEG-RSWNVIKGDAI-NLSSSFEKESVDTIVYS  494 (677)
T ss_pred             HHHHhhhcC-CCeEEEEcchH-hCccccCCCCEEEEEEc
Confidence                11222 35777776654 454345 6789999854

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.49  E-value=0.00015  Score=60.61  Aligned_cols=61  Identities=11%  Similarity=0.038  Sum_probs=42.2

Q ss_pred             chHHHHHHHhhcCCCCccccc--ccccc------cCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc
Q 035595           52 DSDAWKRFHSRHSSGKFFKFT--AELSN------CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE  114 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdR--PEL~~------~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k  114 (178)
                      +++.||.-|..... .|=-..  |-|..      ..+..+||++|||.|-.+.-|+..- ..++|+|++..
T Consensus         2 ~~~~Wd~rw~~~~~-~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~   70 (218)
T PRK13255          2 DPDFWHEKWAENQI-GFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSEL   70 (218)
T ss_pred             CHhHHHHHHcCCCC-CCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHH
Confidence            35689999976642 331222  32221      1245699999999999999999864 58999998833

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.48  E-value=0.00022  Score=63.35  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh--hheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..+..++....  ..++++|++.        +....|..|+.|..+..... ++.. ++.|+||+
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~-~~~~-~~fD~Ii~  155 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG-VPEF-APYDVIFV  155 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc-cccc-CCccEEEE
Confidence            4568999999999999999998653  2589999773        33446788898887654322 2222 45777776

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.47  E-value=0.00011  Score=52.72  Aligned_cols=49  Identities=12%  Similarity=0.138  Sum_probs=37.3

Q ss_pred             ceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEccc
Q 035595           82 ALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGE  130 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~  130 (178)
                      .+|||+|||+|++++-++.....+++++|++        ......+. .+++|.+++.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~   59 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA   59 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch
Confidence            4799999999999999998774589999977        23333444 4578888666

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.47  E-value=0.00034  Score=54.87  Aligned_cols=68  Identities=15%  Similarity=0.057  Sum_probs=45.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh--hheeeeecccccccC------CCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVDGEYYNN------GHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~k~~~~------g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|.....++....  .+++++|++......      ...++.|...... ..+ .-++..|++++.
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~-~~~~~~D~i~~~  113 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE-ALP-FEDNSFDAVTIA  113 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh-cCC-CCCCcEEEEEEe
Confidence            3678999999999999999988754  378999987221111      3346778775553 222 114678887653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.46  E-value=0.0003  Score=63.30  Aligned_cols=67  Identities=7%  Similarity=-0.065  Sum_probs=46.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-------ccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-------YNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-------~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      .+..+|||||||+|..++.|+......++++|++..+       ......++.|...... ..+  + .++.|+|+..
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~-~~~--~~~~~fD~I~s~  339 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCT-KKT--YPDNSFDVIYSR  339 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc-cCC--CCCCCEEEEEEC
Confidence            4567999999999999999987655589999988221       1111235888876654 222  2 3678988864

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.44  E-value=0.00018  Score=58.22  Aligned_cols=68  Identities=10%  Similarity=0.028  Sum_probs=44.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|.++..++... ..++++|.+...        ...+. +++|...... ..+..-++..|+||+.+
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~fD~Ii~~~  122 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL-KIDYRQTTAE-ELAAEHPGQFDVVTCME  122 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHH-HhhhhcCCCccEEEEhh
Confidence            356789999999999999888765 478999977222        12232 4666654432 22212246889987744

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.41  E-value=9.6e-05  Score=62.51  Aligned_cols=71  Identities=15%  Similarity=0.083  Sum_probs=48.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+||++|||.|....-|...-.-..++++++...-.+.+. .+...+.+.+.++..-=..|-|+|||..
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq   83 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ   83 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh
Confidence            4678999999999999888777544456777777432222222 2666666666565543388999999853

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.39  E-value=0.00023  Score=60.63  Aligned_cols=68  Identities=10%  Similarity=0.061  Sum_probs=45.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      ..-.++||+|||+|.+...|++.+. .++|+|++.      +..-.+..+++|.+.....-.|   ++.-|++|+.-+
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P---~~~FDLIV~SEV  115 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWP---EGRFDLIVLSEV  115 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT------SS-EEEEEEES-
T ss_pred             cccceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCC---CCCeeEEEEehH
Confidence            4457899999999999999999996 999999871      2222456789999976532211   678999998654

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00740 methyltransferase, putative

Probab=97.37  E-value=0.00041  Score=56.94  Aligned_cols=52  Identities=10%  Similarity=-0.063  Sum_probs=36.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhh---hhheeeeecc--------cccccCC-CcceEEEEcccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI---KMKILASLVD--------GEYYNNG-HENFSFLVDGEY  131 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~---~~~i~AtD~s--------~k~~~~g-~~N~~F~~~~~~  131 (178)
                      +..+|||+|||+|+.+..++...   ...++++|.+        ++....+ ..++.|......
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~  116 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR  116 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence            55789999999999999998753   3579999987        2222222 236788776553

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.36  E-value=0.00041  Score=57.22  Aligned_cols=66  Identities=12%  Similarity=0.076  Sum_probs=45.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc--------ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..++.++... ...++++|++.++        ......++.|.........+   .++.|++|.
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~  181 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP---GGRFDLIVS  181 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC---CCceeEEEE
Confidence            356789999999999999999875 4589999987322        11234568888766532221   466777654

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.35  E-value=0.00041  Score=57.78  Aligned_cols=58  Identities=12%  Similarity=-0.029  Sum_probs=40.8

Q ss_pred             HHHHHHhhcCCCCccccc--cccc---c---cCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc
Q 035595           55 AWKRFHSRHSSGKFFKFT--AELS---N---CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE  114 (178)
Q Consensus        55 ~Wd~Fy~rh~~~~FFKdR--PEL~---~---~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k  114 (178)
                      +||.-|..+. .-|-..+  |-|.   .   ..+..+||++|||.|--+.-|+..- ..++|+|++..
T Consensus         2 ~Wd~ry~~~~-~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G-~~V~gvD~S~~   67 (213)
T TIGR03840         2 FWHERWQEGQ-IGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQG-HRVLGVELSEI   67 (213)
T ss_pred             hHHHHHhcCC-CCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCC-CeEEEEeCCHH
Confidence            6999996664 2333333  3221   1   1345799999999999999998764 58999998833

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.34  E-value=0.00037  Score=60.04  Aligned_cols=65  Identities=8%  Similarity=0.049  Sum_probs=45.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++... ..+++|+|++        ..+...|+. ++.|..+.....++   +++.|++|.
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~---~~~fD~Iv~  195 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP---GRKYDLIVS  195 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC---CCCccEEEE
Confidence            35689999999999999999864 3589999987        223334653 58888866532222   235676664

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.33  E-value=0.00024  Score=63.02  Aligned_cols=51  Identities=12%  Similarity=0.057  Sum_probs=42.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDG  129 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~  129 (178)
                      .+.++|||||||-|.+++-.++...-+++++++|        ++....|.+ |+++...+
T Consensus        71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d  130 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD  130 (283)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence            5789999999999999999999865689999977        556777888 77776543

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.33  E-value=0.00037  Score=59.47  Aligned_cols=49  Identities=12%  Similarity=0.135  Sum_probs=36.9

Q ss_pred             ceeEeeccCCchhHHHhHHhh-hhheeeeecccc--------cccCCCcc-eEEEEccc
Q 035595           82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE--------YYNNGHEN-FSFLVDGE  130 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k--------~~~~g~~N-~~F~~~~~  130 (178)
                      .+|||+|||+|..++.++... ..+++|+|++.+        +...+..+ +.|..+..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~  174 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL  174 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence            689999999999999999865 358999998722        22335544 88887654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PTZ00146 fibrillarin; Provisional

Probab=97.31  E-value=0.00047  Score=61.33  Aligned_cols=95  Identities=9%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             hHHHHHHHhhcCCCCcccccccccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccccc------ccCCCcceE
Q 035595           53 SDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEY------YNNGHENFS  124 (178)
Q Consensus        53 ~~~Wd~Fy~rh~~~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~------~~~g~~N~~  124 (178)
                      -+-|+-|.++=.. -..+.=..| ...+..+||++|||+|.++.+|+..+  .-.++|+|++.+.      ......|+.
T Consensus       107 yR~w~p~rSKlaa-~i~~g~~~l-~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~  184 (293)
T PTZ00146        107 YRVWNPFRSKLAA-AIIGGVANI-PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIV  184 (293)
T ss_pred             eeeeCCcccHHHH-HHHCCccee-ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCE
Confidence            3567776654431 122221222 33466899999999999999999987  3479999988431      111236888


Q ss_pred             EEEcccccCCC-CCCCCCcceEeeee
Q 035595          125 FLVDGEYYSNC-PAVSGSQNYVILAN  149 (178)
Q Consensus       125 F~~~~~~~s~~-p~~~~s~~~vil~n  149 (178)
                      +...+...... ..+.+++|+|++-+
T Consensus       185 ~I~~Da~~p~~y~~~~~~vDvV~~Dv  210 (293)
T PTZ00146        185 PIIEDARYPQKYRMLVPMVDVIFADV  210 (293)
T ss_pred             EEECCccChhhhhcccCCCCEEEEeC
Confidence            87766532211 12345899987654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.00026  Score=61.40  Aligned_cols=59  Identities=14%  Similarity=0.083  Sum_probs=44.6

Q ss_pred             eeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEccc----------ccCCCCCCCCC
Q 035595           83 LDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDGE----------YYSNCPAVSGS  141 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~~----------~~s~~p~~~~s  141 (178)
                      +|||+|||+|..|+-++.... ..++|||++        ..+...|+.++.+....-          +.++||=||.+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence            799999999999999999864 489999988        344555655555555421          33889999777

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.26  E-value=0.00066  Score=58.78  Aligned_cols=66  Identities=9%  Similarity=0.035  Sum_probs=41.6

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ..+..+|||||||.|++++-++....-+++++.+|        ++..+.|..+ +++....-.     .+++.-|-+|-+
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~-----~~~~~fD~IvSi  134 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR-----DLPGKFDRIVSI  134 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG-----G---S-SEEEEE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc-----ccCCCCCEEEEE
Confidence            35788999999999999999999866688888866        5556778765 677665432     234477776655

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.24  E-value=0.00018  Score=62.90  Aligned_cols=32  Identities=9%  Similarity=-0.020  Sum_probs=29.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +..+||+||||-|+...|++..-. .++|+|++
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~s   90 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDAS   90 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCC-eeEEecCC
Confidence            578999999999999999999885 99999977

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.24  E-value=0.00047  Score=61.92  Aligned_cols=68  Identities=4%  Similarity=-0.129  Sum_probs=45.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecccc----cc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE----YY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k----~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..++.++... ...++++|.+..    +. ..+..++.|..+... .++ --.++.|+||..+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e-~lp-~~~~sFDvVIs~~  186 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAE-DLP-FPTDYADRYVSAG  186 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHH-hCC-CCCCceeEEEEcC
Confidence            45799999999999999998764 247899998721    11 112346777665543 222 1146789888755

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.22  E-value=0.00072  Score=57.05  Aligned_cols=67  Identities=12%  Similarity=0.104  Sum_probs=47.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+.+++++||||||+.++-++.. ...+++|+|.+        ..++.-|+.|+....+.+..-|+ .++ +.|.+.|
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~-~~daiFI  108 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLP-SPDAIFI  108 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCC-CCCEEEE
Confidence            57789999999999999999943 35689999975        33445579999988866642222 333 4555544

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.19  E-value=0.00066  Score=59.07  Aligned_cols=66  Identities=15%  Similarity=0.110  Sum_probs=45.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|+.++..+... ..++++|++.        .+...|..++.+..++.. .+|.. .++.|++|.
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~-~~~~D~Iv~  254 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLS-SESVDAIAT  254 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcc-cCCCCEEEE
Confidence            466799999999999988765543 5899999873        233446677777776553 23211 456777665

This family is found exclusively in the Archaea.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.18  E-value=0.00059  Score=59.69  Aligned_cols=63  Identities=8%  Similarity=0.050  Sum_probs=44.3

Q ss_pred             ceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595           82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+|||+|||+|..++.++... ...++|+|++        +.+...|.. ++.|..+.....++   +++.|+||.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---GRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC---CCCccEEEE
Confidence            689999999999999999864 3589999987        223334553 48888876542332   246777664

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00067  Score=57.97  Aligned_cols=59  Identities=12%  Similarity=0.026  Sum_probs=45.9

Q ss_pred             cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccC
Q 035595           74 ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYS  133 (178)
Q Consensus        74 EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s  133 (178)
                      +++...+.++|||||||+|-++.=|+.-+. +++.+++.        ++...-|..|+.+.+++-..+
T Consensus        66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G  132 (209)
T COG2518          66 QLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG  132 (209)
T ss_pred             HHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence            334456789999999999999999998886 88887755        345667898998888666433

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.16  E-value=0.0007  Score=59.83  Aligned_cols=66  Identities=17%  Similarity=0.121  Sum_probs=43.6

Q ss_pred             ceeEeeccCCchhHHHhHHhhhhheeeeeccccc--ccCCCcceEEEEcccccCCC-----CCCCCCcceEeee
Q 035595           82 ALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--YNNGHENFSFLVDGEYYSNC-----PAVSGSQNYVILA  148 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--~~~g~~N~~F~~~~~~~s~~-----p~~~~s~~~vil~  148 (178)
                      ..++|+|||+|-|++=++++.+ .++|||+++.-  -..+..+++....+.-.+..     .|.+.|||+|+-+
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A  107 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA  107 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhh-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence            3789999999988888888887 99999988321  11233444444444322222     2228999998864

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.16  E-value=0.00031  Score=59.49  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=40.7

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeecccccccCCC-----cceEEEEcccccCCCCCCCCCcceEe
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYYNNGH-----ENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~~~g~-----~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ..+|||+|||+|..++.++... ...++|+|++..+-+..-     .+++|..+.....++..+.+..|+||
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv  158 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILA  158 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEE
Confidence            4589999999999999998764 347899998732211111     11466665543233333345667644

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.15  E-value=0.00041  Score=57.58  Aligned_cols=51  Identities=12%  Similarity=-0.111  Sum_probs=36.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHENFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~  130 (178)
                      +..+|||+|||+|+.++..+.....+++++|.+.++        ...|..|+.|..+..
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~  111 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNA  111 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchH
Confidence            356899999999999997554333488998876322        334666788877654

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.12  E-value=0.0008  Score=58.16  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=55.1

Q ss_pred             cchHHHHHHHhhcCCCCccccc---ccc-----------------cc---c-CCCceeEeeccCCchhHHHhHHh-hhhh
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFT---AEL-----------------SN---C-HEAALDAKGNFGNGSLIADFSVV-IKMK  105 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdR---PEL-----------------~~---~-~~~~~vLEvGCG~Gnta~pll~~-~~~~  105 (178)
                      -..++||.-|.+-=+ || |..   .|.                 ..   . ....+||++|||+|...+.|+.. ...+
T Consensus        16 GtK~yWD~~Y~~El~-Nf-r~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~   93 (227)
T KOG1271|consen   16 GTKSYWDAAYELELT-NF-REHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSK   93 (227)
T ss_pred             chHHHHHHHHHHHHh-hc-ccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCC
Confidence            367899999977642 43 443   111                 11   1 23349999999999999999985 3445


Q ss_pred             eeeeecc--------cccccCCCcc-eEEEEccc
Q 035595          106 ILASLVD--------GEYYNNGHEN-FSFLVDGE  130 (178)
Q Consensus       106 i~AtD~s--------~k~~~~g~~N-~~F~~~~~  130 (178)
                      .+++|-+        ..+...|..| |+|.++..
T Consensus        94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI  127 (227)
T KOG1271|consen   94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI  127 (227)
T ss_pred             ccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence            7888854        5567788998 99999766

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.12  E-value=0.001  Score=60.44  Aligned_cols=68  Identities=12%  Similarity=-0.003  Sum_probs=47.9

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ...+..+|||+|||+|..++.++...  ..+++|+|++        +++...|+.|+.|...... .+++  +++.|+|+
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~-~~~~--~~~fD~Vl  323 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR-SFSP--EEQPDAIL  323 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc-cccc--CCCCCEEE
Confidence            33456899999999999988888753  2479999977        4445568888999886654 2222  24566665


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      +
T Consensus       324 ~  324 (445)
T PRK14904        324 L  324 (445)
T ss_pred             E
Confidence            4

>TIGR03438 probable methyltransferase

Probab=97.12  E-value=0.00048  Score=59.46  Aligned_cols=58  Identities=5%  Similarity=0.074  Sum_probs=42.3

Q ss_pred             chHHHHHHHhhcCCCCccccc----------cccccc-CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc
Q 035595           52 DSDAWKRFHSRHSSGKFFKFT----------AELSNC-HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD  112 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdR----------PEL~~~-~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s  112 (178)
                      .++-|++.+. ..  .++--|          ++++.. .+..+|||+|||||..+.+|+...  ..+++++|+|
T Consensus        27 G~~lf~~i~~-~p--eYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS   97 (301)
T TIGR03438        27 GSELFEQICE-LP--EYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDIS   97 (301)
T ss_pred             HHHHHHHHHC-CC--ccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECC
Confidence            5567888873 32  466555          333322 245789999999999999999875  3589999988

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK14967 putative methyltransferase; Provisional

Probab=97.12  E-value=0.00068  Score=55.47  Aligned_cols=63  Identities=13%  Similarity=-0.043  Sum_probs=40.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++.....+++++|++...        ...+. ++.+.......    .+ .++.|+||+
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~----~~~~~~fD~Vi~  107 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWAR----AVEFRPFDVVVS  107 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhh----hccCCCeeEEEE
Confidence            457999999999999988887532378999988322        22333 46666544331    23 356777664

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.10  E-value=0.00093  Score=57.36  Aligned_cols=64  Identities=11%  Similarity=0.002  Sum_probs=41.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------cccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++..-..+++|+|++..        ...+++.+ +.+....    +.+..+++.|+|+.
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~----~~~~~~~~fDlVva  231 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY----LEQPIEGKADVIVA  231 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc----cccccCCCceEEEE
Confidence            34799999999999998877653347999998732        22233332 3333322    22334678898875

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.10  E-value=0.00079  Score=61.44  Aligned_cols=72  Identities=10%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             ccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcce
Q 035595           75 LSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNY  144 (178)
Q Consensus        75 L~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~  144 (178)
                      ++...+..+|||+|||+|.-++-++...  ..+++|+|++        +++...|+.|+.|...... .++..+.++.|.
T Consensus       232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~  310 (431)
T PRK14903        232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDR  310 (431)
T ss_pred             HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCE
Confidence            3444567899999999999998888764  4589999987        4445668888888886654 233334556666


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      |++
T Consensus       311 Vl~  313 (431)
T PRK14903        311 ILV  313 (431)
T ss_pred             EEE
Confidence            654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.09  E-value=0.00098  Score=60.07  Aligned_cols=64  Identities=9%  Similarity=0.076  Sum_probs=43.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc------CCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN------NGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~------~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||||||+|..+..++.....+++++|++....+      .+. +++|......     .++++.|.|+.+
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~-----~l~~~fD~Ivs~  235 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYR-----DLNGQFDRIVSV  235 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchh-----hcCCCCCEEEEe
Confidence            466899999999999999998765558999998722211      122 3566554322     236788988754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.05  E-value=0.00099  Score=56.87  Aligned_cols=52  Identities=19%  Similarity=0.137  Sum_probs=38.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-------ccCCCcceEEEEcccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-------YNNGHENFSFLVDGEY  131 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-------~~~g~~N~~F~~~~~~  131 (178)
                      +..+||++|||||..++-.+---...++|+|++.++       +..+.-++.|..+...
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~  103 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS  103 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchh
Confidence            356899999999999998877655589999977222       2335556888887663

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.00  E-value=0.0013  Score=59.85  Aligned_cols=63  Identities=14%  Similarity=0.038  Sum_probs=42.2

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeeccccc--------ccCC---CcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY--------YNNG---HENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~--------~~~g---~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      ..+|||+|||+|..++-++... ..+++++|++..+        ..++   ..++.|......    +.+ +++.|+||.
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l----~~~~~~~fDlIls  304 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL----SGVEPFRFNAVLC  304 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc----ccCCCCCEEEEEE
Confidence            3589999999999999998864 4589999988221        1122   346777765443    223 346676665

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=96.99  E-value=0.0024  Score=54.46  Aligned_cols=68  Identities=9%  Similarity=0.015  Sum_probs=46.7

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ..+..+||+||||+|..++.++... ..++++.|..       ++....|.. +++|....... .  .+++ .|++++.
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~-~--~~~~-~D~v~~~  222 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK-E--SYPE-ADAVLFC  222 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC-C--CCCC-CCEEEeE
Confidence            3466899999999999999999875 4567777743       344445554 48888876541 1  1222 4888876


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      +
T Consensus       223 ~  223 (306)
T TIGR02716       223 R  223 (306)
T ss_pred             h
Confidence            6

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.94  E-value=0.0008  Score=59.81  Aligned_cols=49  Identities=14%  Similarity=0.127  Sum_probs=40.3

Q ss_pred             ceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595           82 ALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      .+|||+|||+|+.+++|+...+ +++|+|.+        +.+..+|+.|+.|..+...
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~-~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~  255 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR-RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE  255 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence            4699999999999999999886 89999977        3344567888999887764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.92  E-value=0.0013  Score=61.47  Aligned_cols=50  Identities=6%  Similarity=0.006  Sum_probs=36.1

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCc-ceEEEEccc
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHE-NFSFLVDGE  130 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~  130 (178)
                      ..+|||+|||+|..++.++... ..+++|+|++.        .+...|+. ++.|..+..
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~  198 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW  198 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch
Confidence            3589999999999999998753 45899999872        22333543 477776554

>TIGR00452 methyltransferase, putative

Probab=96.90  E-value=0.0016  Score=57.73  Aligned_cols=67  Identities=6%  Similarity=-0.150  Sum_probs=43.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------cc---CCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YN---NGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~---~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..++.++......++++|.+...      ..   ....++.+...+.. .+|+  ..+.|+|+..+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~--~~~FD~V~s~g  196 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHE--LYAFDTVFSMG  196 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCC--CCCcCEEEEcc
Confidence            357999999999999999887654478999977321      10   11234556554432 3443  24788887654

Known examples to date are restricted to the proteobacteria.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.89  E-value=0.0011  Score=55.39  Aligned_cols=33  Identities=21%  Similarity=0.138  Sum_probs=26.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +..+|||+|||+|..++.++.....+++|+|++
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis  151 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDID  151 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECC
Confidence            457999999999998887666543369999988

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.89  E-value=0.0013  Score=56.16  Aligned_cols=50  Identities=14%  Similarity=0.232  Sum_probs=41.7

Q ss_pred             ceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595           82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      ..+||||||.|....-++..+ ...++++++.        +++.+.|+.|+...+.++.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~  108 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAV  108 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence            468999999999999999875 4578888866        6777788889999987774

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.88  E-value=0.002  Score=58.41  Aligned_cols=70  Identities=10%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCC---CCCCCcc
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCP---AVSGSQN  143 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p---~~~~s~~  143 (178)
                      ...+..+|||+|||+|..++.|+...  +.+++|+|++        +++...|+.|+.+..+... .++.   -.+++.|
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~~~fD  327 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR-NLLELKPQWRGYFD  327 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh-hcccccccccccCC
Confidence            33456899999999999999998864  3479999977        3445668888998886653 2221   1246777


Q ss_pred             eEee
Q 035595          144 YVIL  147 (178)
Q Consensus       144 ~vil  147 (178)
                      .|++
T Consensus       328 ~Vl~  331 (434)
T PRK14901        328 RILL  331 (434)
T ss_pred             EEEE
Confidence            7765

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.87  E-value=0.00095  Score=59.44  Aligned_cols=49  Identities=16%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             ceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595           82 ALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      .+|||++||+|+.+++|+...+ +++|+|.+        +.+..+|+.|+.|......
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~-~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~  264 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR-RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE  264 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            5799999999999999999876 89999977        3334467888999887763

>PHA03411 putative methyltransferase; Provisional

Probab=96.82  E-value=0.0016  Score=57.74  Aligned_cols=80  Identities=16%  Similarity=0.082  Sum_probs=48.5

Q ss_pred             CCCcccccccc----cccCCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccccc---CCCcceEEEEcccccCCCC
Q 035595           65 SGKFFKFTAEL----SNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYYN---NGHENFSFLVDGEYYSNCP  136 (178)
Q Consensus        65 ~~~FFKdRPEL----~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~~---~g~~N~~F~~~~~~~s~~p  136 (178)
                      .+-||-.+.-+    .......+|||+|||+|..++.++... ..+++++|++.+...   ....++.|.++... ... 
T Consensus        45 ~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~-e~~-  122 (279)
T PHA03411         45 SGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVF-EFE-  122 (279)
T ss_pred             ceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchh-hhc-
Confidence            45677766221    122345689999999999888887753 358999998833322   12335677666553 211 


Q ss_pred             CCCCCcceEee
Q 035595          137 AVSGSQNYVIL  147 (178)
Q Consensus       137 ~~~~s~~~vil  147 (178)
                       ..++.|+||.
T Consensus       123 -~~~kFDlIIs  132 (279)
T PHA03411        123 -SNEKFDVVIS  132 (279)
T ss_pred             -ccCCCcEEEE
Confidence             1345666554

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.79  E-value=0.0028  Score=57.33  Aligned_cols=70  Identities=10%  Similarity=0.042  Sum_probs=44.9

Q ss_pred             ccccCCCceeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcce
Q 035595           75 LSNCHEAALDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNY  144 (178)
Q Consensus        75 L~~~~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~  144 (178)
                      ++...+..+|||+|||+|+.++.++.... ..++|+|++        +++...|.. +.|..+... .+++.+ +++.|.
T Consensus       239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~-~~~~~~~~~~fD~  316 (427)
T PRK10901        239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDAR-DPAQWWDGQPFDR  316 (427)
T ss_pred             HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcc-cchhhcccCCCCE
Confidence            34445678999999999999999998653 489999977        233334543 466665443 222222 345665


Q ss_pred             Ee
Q 035595          145 VI  146 (178)
Q Consensus       145 vi  146 (178)
                      |+
T Consensus       317 Vl  318 (427)
T PRK10901        317 IL  318 (427)
T ss_pred             EE
Confidence            54

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.79  E-value=0.00037  Score=61.88  Aligned_cols=47  Identities=17%  Similarity=0.147  Sum_probs=35.6

Q ss_pred             eeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           83 LDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      .|||+=||+|+.++||+...+ +++|+++.        ..+..+|+.|+.|.....
T Consensus       199 ~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            799999999999999999987 89998855        455677999999987543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.76  E-value=0.0021  Score=54.50  Aligned_cols=55  Identities=11%  Similarity=-0.014  Sum_probs=42.0

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      +...+..+|||+|||+|.-.+.|+...  +..++|+|++        ++....|+.|+.+.....
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~  131 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG  131 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH
Confidence            344567899999999999999998864  3479999977        344556778888877654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.76  E-value=0.0031  Score=55.26  Aligned_cols=64  Identities=14%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             CCccccc------ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----ccC--CCcceEEEEccc
Q 035595           66 GKFFKFT------AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----YNN--GHENFSFLVDGE  130 (178)
Q Consensus        66 ~~FFKdR------PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~~~--g~~N~~F~~~~~  130 (178)
                      .||-.|.      -+.....+.+.|||||+|.|+...+|++..+ +++|+-++.+.    .+.  ...|++....++
T Consensus        10 QnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da   85 (259)
T COG0030          10 QNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDA   85 (259)
T ss_pred             cccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCch
Confidence            3666666      2223344578999999999999999999986 78887655211    111  456777776665

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.71  E-value=0.0012  Score=56.77  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=37.4

Q ss_pred             CceeEeeccCCchhHHHhHHhh--hhheeeeecccccccC-------CCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595           81 AALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEYYNN-------GHENFSFLVDGEYYSNCPAV-SGSQNYVI  146 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~~~~-------g~~N~~F~~~~~~~s~~p~~-~~s~~~vi  146 (178)
                      +..+||||||+|-..--|+...  ....+|||++-++.+.       --.+++..++..    -.+| +++|||+|
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl----~~~l~~~~VDvLv  115 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDL----LSGLRNESVDVLV  115 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhH----HhhhccCCccEEE
Confidence            5568999999997766666544  2467999988444332       111244444433    2444 56666655

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=96.70  E-value=0.003  Score=55.83  Aligned_cols=64  Identities=23%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             CceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      ..+||++|||+|=+++--+..-..+++|+|++        +.+..+|+.. .+......    ..+.+..|+| ++|+
T Consensus       162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~----~~~~~~~dlv-vANI  233 (295)
T PF06325_consen  162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSE----DLVEGKFDLV-VANI  233 (295)
T ss_dssp             TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTS----CTCCS-EEEE-EEES
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEec----ccccccCCEE-EECC
Confidence            57999999999988887666544489999977        4445566666 44432111    1224666665 4775

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.70  E-value=0.0029  Score=58.91  Aligned_cols=50  Identities=14%  Similarity=0.048  Sum_probs=36.4

Q ss_pred             CCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      +..+|||+|||+|..++.++.. ...+++|+|++        +++...+. +++|..+..
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl  309 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSW  309 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcch
Confidence            3468999999999999999875 34589999987        22223343 688877554

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=96.64  E-value=0.0037  Score=55.78  Aligned_cols=62  Identities=19%  Similarity=0.205  Sum_probs=41.6

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..+|||+|||+|..+..++... ..+++++|++.        ....++.. .+|......    +.+++..|++|.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~----~~~~~~fDlIvs  267 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVF----SDIKGRFDMIIS  267 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccc----cccCCCccEEEE
Confidence            4589999999999999999864 34799999872        22333433 344443222    234677888876

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.57  E-value=0.0014  Score=54.97  Aligned_cols=53  Identities=13%  Similarity=0.103  Sum_probs=38.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc-ceEEEEcccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE-NFSFLVDGEY  131 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~  131 (178)
                      .++.+|||+|||+|..++-|+...  .-+++++|++.        .....|+. ++++..+...
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            467899999999999999888754  34899999773        23444554 4777776653

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.56  E-value=0.0018  Score=56.88  Aligned_cols=65  Identities=14%  Similarity=0.061  Sum_probs=44.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceE-EEEcccccCCCCCC-CCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFS-FLVDGEYYSNCPAV-SGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~-F~~~~~~~s~~p~~-~~s~~~vi  146 (178)
                      ....-|||||||||.. |+..+- -.+.++..|-+        .++++..+.++. |+++... ++ |.| -+|+|+||
T Consensus        75 ~~K~~vLEvgcGtG~N-fkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge-~l-~~l~d~s~DtVV  150 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGAN-FKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGE-NL-PQLADGSYDTVV  150 (252)
T ss_pred             cCccceEEecccCCCC-cccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechh-cC-cccccCCeeeEE
Confidence            4556789999999965 555552 12467777733        555666778877 8887654 44 445 78999887

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.51  E-value=0.0035  Score=52.57  Aligned_cols=59  Identities=12%  Similarity=0.047  Sum_probs=40.2

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCC
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSN  134 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~  134 (178)
                      +...+.++|||||||+|-++.-|+.-+.  ..++++++.        ++....|..|+.|..+....+.
T Consensus        68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~  136 (209)
T PF01135_consen   68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW  136 (209)
T ss_dssp             TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred             HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence            3446789999999999999998887653  246777754        4455668889999997654333

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK04457 spermidine synthase; Provisional

Probab=96.50  E-value=0.0037  Score=53.38  Aligned_cols=67  Identities=12%  Similarity=0.090  Sum_probs=44.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCC-CcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNG-HENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ++.+||+||||+|+.+..++... ..+++++|++        +.....+ ..++.+..++...-+ ...++..|++++
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l-~~~~~~yD~I~~  142 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI-AVHRHSTDVILV  142 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH-HhCCCCCCEEEE
Confidence            45789999999999999888764 4678999976        2222222 356888876552111 123456787765

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.35  E-value=0.0033  Score=50.35  Aligned_cols=33  Identities=6%  Similarity=-0.087  Sum_probs=25.3

Q ss_pred             CCceeEeeccCCchhHHHhHHh-hhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s  112 (178)
                      ...+|||+|||+|=.++-++.. ....+++||..
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~   78 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYN   78 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccc
Confidence            4679999999999888888877 33589999966

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.34  E-value=0.0028  Score=61.24  Aligned_cols=94  Identities=4%  Similarity=-0.079  Sum_probs=57.3

Q ss_pred             chHHHHHHHhhcCCCCcccccc---c-ccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCC
Q 035595           52 DSDAWKRFHSRHSSGKFFKFTA---E-LSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNG  119 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdRP---E-L~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g  119 (178)
                      .-+++-.++.-+.+ .||.|..   . +.......+|||+|||||..++.++..-..+++++|++        +.+..+|
T Consensus       507 g~~f~v~~~~~~~t-G~flDqr~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng  585 (702)
T PRK11783        507 GAKLLVNLTDYLDT-GLFLDHRPTRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG  585 (702)
T ss_pred             CEEEEEEcCCCCcc-eECHHHHHHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            44444455544443 5776652   1 11222467999999999999999998643379999977        3334456


Q ss_pred             Cc--ceEEEEcccccCCCCCCCCCcceEee
Q 035595          120 HE--NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus       120 ~~--N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..  +++|.+++...-+. .+.+..|+||+
T Consensus       586 ~~~~~v~~i~~D~~~~l~-~~~~~fDlIil  614 (702)
T PRK11783        586 LSGRQHRLIQADCLAWLK-EAREQFDLIFI  614 (702)
T ss_pred             CCccceEEEEccHHHHHH-HcCCCcCEEEE
Confidence            64  68888876531111 11345565554

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.32  E-value=0.0021  Score=58.56  Aligned_cols=51  Identities=10%  Similarity=-0.076  Sum_probs=37.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc--ceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE--NFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~--N~~F~~~~~  130 (178)
                      ...+|||+|||||..++..+..-..+++++|++        +.+..+|+.  +++|..++.
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~  280 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV  280 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH
Confidence            467999999999998887554433489999977        233445653  688888765

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.32  E-value=0.015  Score=51.08  Aligned_cols=59  Identities=24%  Similarity=0.279  Sum_probs=42.4

Q ss_pred             hHHHHHHHh---hcCCCCccccc-----------ccccccC--CCceeEeeccCCc----hhHHHhHHhh------hhhe
Q 035595           53 SDAWKRFHS---RHSSGKFFKFT-----------AELSNCH--EAALDAKGNFGNG----SLIADFSVVI------KMKI  106 (178)
Q Consensus        53 ~~~Wd~Fy~---rh~~~~FFKdR-----------PEL~~~~--~~~~vLEvGCG~G----nta~pll~~~------~~~i  106 (178)
                      +.-|+.|..   .|. +.||-|+           |+|....  ...+|...||+||    |.|+-|++..      ...|
T Consensus        54 ~~e~~~~l~~ltin~-T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I  132 (268)
T COG1352          54 SEELQAFLDALTINV-TEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKI  132 (268)
T ss_pred             HHHHHHHHHHhhhcc-chhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEE
Confidence            445666553   444 4899988           7776543  4789999999999    6666666644      4688


Q ss_pred             eeeecc
Q 035595          107 LASLVD  112 (178)
Q Consensus       107 ~AtD~s  112 (178)
                      +|||++
T Consensus       133 ~AtDId  138 (268)
T COG1352         133 LATDID  138 (268)
T ss_pred             EEEECC
Confidence            999977

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.29  E-value=0.0025  Score=59.02  Aligned_cols=65  Identities=15%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             CCcccccccc-----------cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEE
Q 035595           66 GKFFKFTAEL-----------SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFL  126 (178)
Q Consensus        66 ~~FFKdRPEL-----------~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~  126 (178)
                      +-||--+|..           +...+..+|||+=||+|+++++|+..++ ++++++++        ..+..+|..|+.|.
T Consensus       268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~  346 (432)
T COG2265         268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFI  346 (432)
T ss_pred             CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence            4688877322           2334678999999999999999998886 89999866        56678899999999


Q ss_pred             Ecccc
Q 035595          127 VDGEY  131 (178)
Q Consensus       127 ~~~~~  131 (178)
                      +..+.
T Consensus       347 ~~~ae  351 (432)
T COG2265         347 AGDAE  351 (432)
T ss_pred             eCCHH
Confidence            87764

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.24  E-value=0.0039  Score=53.14  Aligned_cols=33  Identities=6%  Similarity=-0.106  Sum_probs=28.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      ...+||++|||||....+++..-.-+++|+|++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~  107 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVG  107 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCC
Confidence            456899999999999999999733489999987

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.21  E-value=0.019  Score=49.14  Aligned_cols=60  Identities=12%  Similarity=0.081  Sum_probs=45.3

Q ss_pred             cchHHHHHHHhhcCCCCccccc--cccc------ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFT--AELS------NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdR--PEL~------~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      .+.+.|+.-|..+. ..|-...  |-|.      ...+..+||..|||.|--+.-|+..- ..++|+|+|
T Consensus         7 ~~~~fW~~rw~~~~-~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G-~~V~GvDlS   74 (226)
T PRK13256          7 NNNQYWLDRWQNDD-VGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKG-VKVIGIELS   74 (226)
T ss_pred             CCHHHHHHHHhcCC-CCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCC-CcEEEEecC
Confidence            35679999998886 4665555  3331      11245799999999999999998865 589999988

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=96.18  E-value=0.0027  Score=55.43  Aligned_cols=66  Identities=18%  Similarity=0.082  Sum_probs=44.4

Q ss_pred             CCceeEeeccCCchhHHHhHHh-hhhheeeeecccccccCCCcc---------eEEEEcccccCCCCCC-CCCcceEe
Q 035595           80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVDGEYYNNGHEN---------FSFLVDGEYYSNCPAV-SGSQNYVI  146 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s~k~~~~g~~N---------~~F~~~~~~~s~~p~~-~~s~~~vi  146 (178)
                      ...+|||+|||+|-.++-++.. .+.+++++++++++++-.-.|         ++|..++.. -.++.. ..+.|+||
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~-~~~~~~~~~~fD~Ii  120 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIK-EFLKALVFASFDLII  120 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHH-HhhhcccccccCEEE
Confidence            4689999999999988888876 346899999886655544433         666665553 223333 33566555

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.13  E-value=0.0046  Score=57.74  Aligned_cols=50  Identities=12%  Similarity=0.040  Sum_probs=40.0

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      ...+||||||.|..++-++... ...+++++++        .+....|..|+.+.....
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~  406 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL  406 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            5689999999999999999875 4578899976        455677899998876543

>PHA03412 putative methyltransferase; Provisional

Probab=96.11  E-value=0.0065  Score=52.98  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=39.7

Q ss_pred             CceeEeeccCCchhHHHhHHhh----hhheeeeecccccccCCC---cceEEEEcccccCCCCCCCCCcceEe
Q 035595           81 AALDAKGNFGNGSLIADFSVVI----KMKILASLVDGEYYNNGH---ENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~----~~~i~AtD~s~k~~~~g~---~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ..+|||+|||+|..++-++...    ...++|+|++..+.....   .++.|..++... .+  +.++.|+||
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~-~~--~~~~FDlII  119 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALT-TE--FDTLFDMAI  119 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc-cc--ccCCccEEE
Confidence            5699999999999999887641    247999998844433322   335666655431 11  234566555

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.97  E-value=0.018  Score=52.14  Aligned_cols=36  Identities=6%  Similarity=-0.005  Sum_probs=29.6

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      ...+..+|||+|||+|..+..++... ..+++|+|++
T Consensus       235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~  271 (426)
T TIGR00563       235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIH  271 (426)
T ss_pred             CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCC
Confidence            33456899999999999999888764 2589999987

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.92  E-value=0.0081  Score=53.81  Aligned_cols=33  Identities=15%  Similarity=0.114  Sum_probs=27.3

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +..+||++|||+|=.++-.+.--..+++|+|++
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiD  194 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDID  194 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCCceEEEecCC
Confidence            357999999999998888777554589999977

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=95.86  E-value=0.018  Score=48.35  Aligned_cols=63  Identities=8%  Similarity=0.020  Sum_probs=39.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      .++.++|++|||.|--++-|+..- ..++|.|.+        +-+...++. ++....+.. .  -.+++..|+++
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G-~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~-~--~~~~~~yD~I~   99 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQG-FDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLN-D--FDFPEEYDFIV   99 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGC-C--BS-TTTEEEEE
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecch-h--ccccCCcCEEE
Confidence            367899999999999999999876 589999987        222233443 555554432 1  12356677764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02672 methionine S-methyltransferase

Probab=95.84  E-value=0.011  Score=60.72  Aligned_cols=31  Identities=16%  Similarity=0.094  Sum_probs=27.2

Q ss_pred             ceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      .+|||+|||+|-.++.|+... ..+++|+|++
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis  151 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDIN  151 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCEEEEEECC
Confidence            589999999999999999864 2489999988

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.75  E-value=0.0097  Score=50.71  Aligned_cols=69  Identities=13%  Similarity=0.007  Sum_probs=44.8

Q ss_pred             eeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcce------EEEEcccccCCCCC-CCCCcceEe
Q 035595           83 LDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENF------SFLVDGEYYSNCPA-VSGSQNYVI  146 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~------~F~~~~~~~s~~p~-~~~s~~~vi  146 (178)
                      +|||||||||--+.-+++.. ...+.-+|..        ......|..|+      ++.........+.. ..++.|.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            59999999999999888764 4566677755        22356677773      22222111111212 378999999


Q ss_pred             eeehh
Q 035595          147 LANLK  151 (178)
Q Consensus       147 l~nl~  151 (178)
                      -+|+-
T Consensus       108 ~~N~l  112 (204)
T PF06080_consen  108 CINML  112 (204)
T ss_pred             ehhHH
Confidence            99974

The function of this family is unknown.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=95.69  E-value=0.018  Score=48.35  Aligned_cols=58  Identities=7%  Similarity=0.014  Sum_probs=42.7

Q ss_pred             hHHHHHHHhhcCCCCccccc--cccc---c---cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           53 SDAWKRFHSRHSSGKFFKFT--AELS---N---CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        53 ~~~Wd~Fy~rh~~~~FFKdR--PEL~---~---~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      .+.|+.-|..+. ..|-..+  |.|.   .   ..+..+||-.|||.|--+.-|+..- ..++++|++
T Consensus         3 ~~~W~~~w~~~~-~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G-~~VvGvDls   68 (218)
T PF05724_consen    3 PEFWEERWQEGQ-TPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG-HDVVGVDLS   68 (218)
T ss_dssp             HHHHHHHHHTT---TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT-EEEEEEES-
T ss_pred             HHHHHHHHhcCC-CCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC-CeEEEEecC
Confidence            579999998876 5787777  4442   2   3456799999999999999998864 589999987

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=95.64  E-value=0.049  Score=49.03  Aligned_cols=43  Identities=21%  Similarity=0.083  Sum_probs=33.1

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcce
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENF  123 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~  123 (178)
                      ..+||++|||.|=.++-++..+ ..+++=+|++        ..+..++++|.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~  210 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT  210 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc
Confidence            4499999999999999999876 3466667766        34456777774

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=95.63  E-value=0.014  Score=56.15  Aligned_cols=75  Identities=15%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             cccccCCCceeEeeccCCchhHHHhHHhhhhheee--------eecccccccCCCcceEEEEcccccCCCCCC-C--CCc
Q 035595           74 ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILA--------SLVDGEYYNNGHENFSFLVDGEYYSNCPAV-S--GSQ  142 (178)
Q Consensus        74 EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~A--------tD~s~k~~~~g~~N~~F~~~~~~~s~~p~~-~--~s~  142 (178)
                      |.+.......+|++=||||..++-++..++ ++++        .|++..+..+|++|.+|.++-+..-+++-+ +  ++.
T Consensus       377 e~~~l~~~k~llDv~CGTG~iglala~~~~-~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~  455 (534)
T KOG2187|consen  377 EWAGLPADKTLLDVCCGTGTIGLALARGVK-RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSE  455 (534)
T ss_pred             HHhCCCCCcEEEEEeecCCceehhhhcccc-ceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCC
Confidence            444445678999999999999999999886 5544        345578889999999999984432555555 3  477


Q ss_pred             ceEeeee
Q 035595          143 NYVILAN  149 (178)
Q Consensus       143 ~~vil~n  149 (178)
                      ++|.+++
T Consensus       456 ~~v~iiD  462 (534)
T KOG2187|consen  456 TLVAIID  462 (534)
T ss_pred             ceEEEEC
Confidence            7555443

>PRK04148 hypothetical protein; Provisional

Probab=95.58  E-value=0.01  Score=47.55  Aligned_cols=49  Identities=6%  Similarity=-0.009  Sum_probs=31.6

Q ss_pred             CceeEeeccCCch-hHHHhHHhhhhheeeeecccccccC-CCcceEEEEccc
Q 035595           81 AALDAKGNFGNGS-LIADFSVVIKMKILASLVDGEYYNN-GHENFSFLVDGE  130 (178)
Q Consensus        81 ~~~vLEvGCG~Gn-ta~pll~~~~~~i~AtD~s~k~~~~-g~~N~~F~~~~~  130 (178)
                      ..+|||||||.|. .+.-|.. ....++|+|++.++-+. ....+.+.+++.
T Consensus        17 ~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~~~~~v~dDl   67 (134)
T PRK04148         17 NKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKLGLNAFVDDL   67 (134)
T ss_pred             CCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhCCeEEECcC
Confidence            3689999999996 5555554 44589999998553221 111255666554

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=95.50  E-value=0.019  Score=52.61  Aligned_cols=63  Identities=13%  Similarity=0.008  Sum_probs=43.5

Q ss_pred             CceeEeeccCCchhHHHhHHhhhhheeeeecc-------cccccCCCcc-eEEEEccc-ccCCCCCCCCCcceEe
Q 035595           81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD-------GEYYNNGHEN-FSFLVDGE-YYSNCPAVSGSQNYVI  146 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k~~~~g~~N-~~F~~~~~-~~s~~p~~~~s~~~vi  146 (178)
                      ...||+||||||=.-+-=+..-.-+++|++.+       +-...+|.++ |++..+-. +..||   .+.||+.|
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIv  132 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIV  132 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEe
Confidence            56899999999987766666544589999977       2234556666 77766433 44666   56777665

>PLN03075 nicotianamine synthase; Provisional

Probab=95.49  E-value=0.036  Score=49.45  Aligned_cols=68  Identities=10%  Similarity=-0.090  Sum_probs=45.1

Q ss_pred             CCceeEeeccCCc-hhHHHhHH-h-hhhheeeeeccc-------ccc--cCCCcc-eEEEEcccccCCCCCCCCCcceEe
Q 035595           80 EAALDAKGNFGNG-SLIADFSV-V-IKMKILASLVDG-------EYY--NNGHEN-FSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        80 ~~~~vLEvGCG~G-nta~pll~-~-~~~~i~AtD~s~-------k~~--~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ++.+|||||||.| -|++=++. . .+.+++.+|.+.       +..  ..|+.+ ++|...+.. ..++. .+.-|+|.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~-~~~~~-l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM-DVTES-LKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh-hcccc-cCCcCEEE
Confidence            7789999999966 44444443 2 234688999772       222  367765 999998775 33333 45689888


Q ss_pred             eee
Q 035595          147 LAN  149 (178)
Q Consensus       147 l~n  149 (178)
                      +.-
T Consensus       201 ~~A  203 (296)
T PLN03075        201 LAA  203 (296)
T ss_pred             Eec
Confidence            873

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=95.46  E-value=0.018  Score=42.86  Aligned_cols=47  Identities=13%  Similarity=-0.074  Sum_probs=33.5

Q ss_pred             eeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEcc
Q 035595           83 LDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDG  129 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~  129 (178)
                      ++|++|||+|..++.++.... .++++.+..        +....++..|+.+...+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~a   56 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAA   56 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence            489999999999999988653 368998866        22233455666666643

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.33  E-value=0.041  Score=45.79  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             cccccc---CCCceeEeeccCCch----hHHHhHHh----h--hhheeeeecc-------------------------cc
Q 035595           73 AELSNC---HEAALDAKGNFGNGS----LIADFSVV----I--KMKILASLVD-------------------------GE  114 (178)
Q Consensus        73 PEL~~~---~~~~~vLEvGCG~Gn----ta~pll~~----~--~~~i~AtD~s-------------------------~k  114 (178)
                      |++...   ....+|+-.||+||-    .|+-|...    .  ..+|+|||++                         ++
T Consensus        21 p~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~r  100 (196)
T PF01739_consen   21 PPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRR  100 (196)
T ss_dssp             -------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHH
T ss_pred             HhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHH
Confidence            555532   367899999999994    45544441    1  3588999977                         11


Q ss_pred             cc----cCCC-------cceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595          115 YY----NNGH-------ENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus       115 ~~----~~g~-------~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      +-    +.+.       .++.|.+.+.. . ++...+..|+++.-|+
T Consensus       101 yf~~~~~~~~~v~~~lr~~V~F~~~NL~-~-~~~~~~~fD~I~CRNV  145 (196)
T PF01739_consen  101 YFTERDGGGYRVKPELRKMVRFRRHNLL-D-PDPPFGRFDLIFCRNV  145 (196)
T ss_dssp             HEEEE-CCCTTE-HHHHTTEEEEE--TT---S------EEEEEE-SS
T ss_pred             hccccCCCceeEChHHcCceEEEecccC-C-CCcccCCccEEEecCE
Confidence            10    0011       12677776665 2 3445788999988886

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.23  E-value=0.0078  Score=53.70  Aligned_cols=95  Identities=17%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             ccccccCCcchhH----HHhhhccCcc------cccccCCCCCCCccccccccchHHHHHHHhhcCCCCccccc------
Q 035595            9 AGEYHSKDFEWET----LKQEIENDPS------LQYHLLPYNSSPEAAQEAEKDSDAWKRFHSRHSSGKFFKFT------   72 (178)
Q Consensus         9 a~eyhs~DFeWe~----lr~EvE~~~s------~~~hll~~~~t~~~~~~~~~~~~~Wd~Fy~rh~~~~FFKdR------   72 (178)
                      .++||.+-++.+.    +++=+|.+|.      +.-.++-+.     +.+...++.+=...|..|- .+|  |.      
T Consensus        35 ~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~-----e~p~~pP~aYVe~LFD~~A-e~F--d~~LVdkL  106 (287)
T COG4976          35 LGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRG-----ETPEKPPSAYVETLFDQYA-ERF--DHILVDKL  106 (287)
T ss_pred             cchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCC-----CCCCCCchHHHHHHHHHHH-HHH--HHHHHHHh
Confidence            4578888888776    4555555654      222222111     1122234466677776664 233  22      


Q ss_pred             ----ccccc-------cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           73 ----AELSN-------CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        73 ----PEL~~-------~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                          |+++.       ..+-.++|++|||||=++-+|-.-+. .+.++|+|
T Consensus       107 ~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS  156 (287)
T COG4976         107 GYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDIS  156 (287)
T ss_pred             cCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh-hccCCchh
Confidence                66532       23468999999999999999998886 89999988

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=95.18  E-value=0.008  Score=53.79  Aligned_cols=32  Identities=16%  Similarity=0.079  Sum_probs=23.8

Q ss_pred             CCceeEeeccCCchhHHHhHHh--hhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVV--IKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~--~~~~i~AtD~s  112 (178)
                      ...++||||||+|- ++|++..  ...+++|||++
T Consensus       114 ~~~~vLDIGtGag~-I~~lLa~~~~~~~~~atDId  147 (321)
T PRK11727        114 ANVRVLDIGVGANC-IYPLIGVHEYGWRFVGSDID  147 (321)
T ss_pred             CCceEEEecCCccH-HHHHHHhhCCCCEEEEEeCC
Confidence            45789999999984 4555543  24689999987

>PLN02476 O-methyltransferase

Probab=95.10  E-value=0.016  Score=51.11  Aligned_cols=56  Identities=14%  Similarity=-0.037  Sum_probs=40.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccCCCc-ceEEEEcccccCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNNGHE-NFSFLVDGEYYSN  134 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~g~~-N~~F~~~~~~~s~  134 (178)
                      ..+.+|||||||+|..++-++...  ..+++++|.+.+        ....|+. ++++..+.+...+
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L  183 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL  183 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            357899999999999999998753  346889887632        2445665 5888887664333

>PRK00811 spermidine synthase; Provisional

Probab=95.06  E-value=0.019  Score=49.50  Aligned_cols=37  Identities=14%  Similarity=-0.054  Sum_probs=29.5

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      +....+.+||+||||+|.++.-++... ..+++++|++
T Consensus        72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid  109 (283)
T PRK00811         72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEID  109 (283)
T ss_pred             hhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCC
Confidence            344567899999999999999999862 2478888877

>TIGR00095 RNA methyltransferase, RsmD family

Probab=95.03  E-value=0.0091  Score=48.74  Aligned_cols=51  Identities=10%  Similarity=-0.153  Sum_probs=36.3

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCc-ceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHE-NFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~-N~~F~~~~~  130 (178)
                      ...+|||++||+|+.++.++.....+++++|.+.++        ...+.. ++.|.....
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~  108 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA  108 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence            457899999999999999998754478999976222        223443 466666555

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=95.00  E-value=0.021  Score=50.65  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=39.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      .+...+|+++||.|.-...|+...  +.+++|.|++        +++..  ..++.|..+...
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~   78 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFS   78 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHH
Confidence            456799999999999999999875  3689999977        22322  457888887663

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.90  E-value=0.028  Score=50.96  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=29.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      .+.+.|||||-||||....||+..+ +++|+..+
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~D   89 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEID   89 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecC
Confidence            4789999999999999999999987 88886644

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=94.87  E-value=0.042  Score=50.02  Aligned_cols=32  Identities=13%  Similarity=0.035  Sum_probs=27.2

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      ...+||+|||+|-.++-++... .-.++|+|+|
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S  181 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVS  181 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEecc
Confidence            3579999999999999999764 4578999988

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=94.71  E-value=0.063  Score=45.47  Aligned_cols=72  Identities=15%  Similarity=0.140  Sum_probs=47.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----cc--CCCcceEEEEcccccCCCCCCCCCcceEeeeehh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----YN--NGHENFSFLVDGEYYSNCPAVSGSQNYVILANLK  151 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~~--~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl~  151 (178)
                      .+...|||+|.|+|.....|+...+ ++++++.+.+.    .+  ....|+....++...--.+..-....+.|+.||=
T Consensus        29 ~~~~~VlEiGpG~G~lT~~L~~~~~-~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP  106 (262)
T PF00398_consen   29 SEGDTVLEIGPGPGALTRELLKRGK-RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLP  106 (262)
T ss_dssp             GTTSEEEEESSTTSCCHHHHHHHSS-EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred             CCCCEEEEeCCCCccchhhHhcccC-cceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEec
Confidence            4678999999999999999999884 88888866111    11  1456788777666421111111456777888874

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00417 speE spermidine synthase

Probab=94.59  E-value=0.031  Score=47.55  Aligned_cols=35  Identities=11%  Similarity=-0.044  Sum_probs=27.5

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      ...+.+||+||||+|.++..++... ..+++++|++
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid  105 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDID  105 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC
Confidence            3445699999999999999888763 2478888876

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK03612 spermidine synthase; Provisional

Probab=94.49  E-value=0.022  Score=53.31  Aligned_cols=40  Identities=8%  Similarity=-0.016  Sum_probs=31.2

Q ss_pred             ccccccCCCceeEeeccCCchhHHHhHHhhh-hheeeeecc
Q 035595           73 AELSNCHEAALDAKGNFGNGSLIADFSVVIK-MKILASLVD  112 (178)
Q Consensus        73 PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s  112 (178)
                      |-+.....+.+||++|||+|.++.-++.+.. .+++++|++
T Consensus       290 ~~l~~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid  330 (521)
T PRK03612        290 PAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD  330 (521)
T ss_pred             HHHhhCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC
Confidence            4444445678999999999999999998642 488898876

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=94.38  E-value=0.021  Score=51.13  Aligned_cols=30  Identities=10%  Similarity=-0.013  Sum_probs=27.6

Q ss_pred             ceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           82 ALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +.||++|||+|=.-.||++.-+ .+.++|++
T Consensus        91 ~~ilDvGCGgGLLSepLArlga-~V~GID~s  120 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGA-QVTGIDAS  120 (282)
T ss_pred             ceEEEeccCccccchhhHhhCC-eeEeeccc
Confidence            6799999999999999999886 89999977

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=94.38  E-value=0.038  Score=50.19  Aligned_cols=50  Identities=12%  Similarity=0.009  Sum_probs=36.5

Q ss_pred             CceeEeeccCCchhHHHhHHhhh-hheeeeeccccc--------ccCCCcceEEEEccc
Q 035595           81 AALDAKGNFGNGSLIADFSVVIK-MKILASLVDGEY--------YNNGHENFSFLVDGE  130 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s~k~--------~~~g~~N~~F~~~~~  130 (178)
                      ..+|||++||+|..+++++.... ..+++.|++..+        ..+++.++.|...+.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da  116 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA  116 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH
Confidence            35899999999999999987642 378999977332        335666666666554

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=94.17  E-value=0.15  Score=46.04  Aligned_cols=66  Identities=8%  Similarity=-0.032  Sum_probs=43.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhh-------heeeeecc--------cccccCCC---cceEEEEcccccCCCCCC-C
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKM-------KILASLVD--------GEYYNNGH---ENFSFLVDGEYYSNCPAV-S  139 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~-------~i~AtD~s--------~k~~~~g~---~N~~F~~~~~~~s~~p~~-~  139 (178)
                      ...++||+++||||-+||.|+.+++.       +++-.|++        +|+...+.   ..+.|..+++. .||  . .
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE-~Lp--Fdd  175 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE-DLP--FDD  175 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc-cCC--CCC
Confidence            44589999999999999999998754       46667766        33322222   23677775554 344  3 4


Q ss_pred             CCcceEee
Q 035595          140 GSQNYVIL  147 (178)
Q Consensus       140 ~s~~~vil  147 (178)
                      .+.|...+
T Consensus       176 ~s~D~yTi  183 (296)
T KOG1540|consen  176 DSFDAYTI  183 (296)
T ss_pred             CcceeEEE
Confidence            55665544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=93.96  E-value=0.024  Score=50.32  Aligned_cols=98  Identities=14%  Similarity=0.004  Sum_probs=58.4

Q ss_pred             cccccCC--CceeEeeccCCchhHHHhHHhhhhheeeeeccc----ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           74 ELSNCHE--AALDAKGNFGNGSLIADFSVVIKMKILASLVDG----EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        74 EL~~~~~--~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~----k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ||+...+  +..||+||||+|=.+--|...- -.++++|+|-    -+-+..++ =++..++--.++| -=||+-|=||.
T Consensus        42 ELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~Glp-frpGtFDg~IS  118 (270)
T KOG1541|consen   42 ELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-GDLILCDMGEGLP-FRPGTFDGVIS  118 (270)
T ss_pred             HHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCCCC-CCCCccceEEE
Confidence            5554444  6789999999998887776655 5789999982    11111112 1222222211221 12788888887


Q ss_pred             eehhhhhhhccCCCCccccCchhhhhhhhc
Q 035595          148 ANLKSYRRVMFDSPDTEEKNKPHLKKFVET  177 (178)
Q Consensus       148 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (178)
                      |.-=   .+.+..-.+-+..++.|..|..|
T Consensus       119 ISAv---QWLcnA~~s~~~P~~Rl~~FF~t  145 (270)
T KOG1541|consen  119 ISAV---QWLCNADKSLHVPKKRLLRFFGT  145 (270)
T ss_pred             eeee---eeecccCccccChHHHHHHHhhh
Confidence            7532   55666555556666777777653

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.93  E-value=0.2  Score=41.08  Aligned_cols=63  Identities=6%  Similarity=0.055  Sum_probs=42.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc---cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD---GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s---~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|++||+|+|..+..|+... ..+.+-.|.-   +.+..  ..++.|.......+    +|. .|+++|.|
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~--~~rv~~~~gd~f~~----~P~-~D~~~l~~  166 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE--ADRVEFVPGDFFDP----LPV-ADVYLLRH  166 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH--TTTEEEEES-TTTC----CSS-ESEEEEES
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc--ccccccccccHHhh----hcc-ccceeeeh
Confidence            45689999999999999999875 3444444422   22222  67899988776533    344 89999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=93.92  E-value=0.15  Score=44.14  Aligned_cols=71  Identities=11%  Similarity=0.120  Sum_probs=43.7

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCc-ceEEEEcccc-cCCCCCCCCCcce
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHE-NFSFLVDGEY-YSNCPAVSGSQNY  144 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~-~s~~p~~~~s~~~  144 (178)
                      ...|.++|||.|-|.|++..-|+..+  ..+++-.++.        +.....|.. |++|...+.. .+.+-++++..|-
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da  116 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA  116 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence            44688999999999999999999876  3466666655        233344664 7899887663 3444456677776


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      |+|
T Consensus       117 vfL  119 (247)
T PF08704_consen  117 VFL  119 (247)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK01581 speE spermidine synthase; Validated

Probab=93.87  E-value=0.041  Score=50.82  Aligned_cols=37  Identities=11%  Similarity=-0.030  Sum_probs=29.9

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      .....+.+||+||||+|.++..++... ..+++++|++
T Consensus       146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID  183 (374)
T PRK01581        146 SKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLD  183 (374)
T ss_pred             HhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC
Confidence            334567899999999999999999864 2488999977

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=93.86  E-value=0.17  Score=44.65  Aligned_cols=59  Identities=17%  Similarity=0.261  Sum_probs=39.3

Q ss_pred             hHHHHHHHhh---cCCCCcccccc-------cccccCCCceeEeeccCCch----hHHHhHHhh-----hhheeeeecc
Q 035595           53 SDAWKRFHSR---HSSGKFFKFTA-------ELSNCHEAALDAKGNFGNGS----LIADFSVVI-----KMKILASLVD  112 (178)
Q Consensus        53 ~~~Wd~Fy~r---h~~~~FFKdRP-------EL~~~~~~~~vLEvGCG~Gn----ta~pll~~~-----~~~i~AtD~s  112 (178)
                      ...|+.+...   |. +.||.|.+       ++....+..+|+-.||.||-    .|+-|.+..     +.+|+|||++
T Consensus        79 ~~e~~~li~~ltine-T~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs  156 (287)
T PRK10611         79 SAEWQAFINALTTNL-TAFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDID  156 (287)
T ss_pred             HHHHHHHHHHhhCCC-CCccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECC
Confidence            5678888743   44 58999982       12122345899999999995    444444421     3579999987

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.84  E-value=0.096  Score=47.60  Aligned_cols=66  Identities=9%  Similarity=-0.064  Sum_probs=45.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc----------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD----------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s----------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ...+||+||||+|--.+.++......++++|-+          ++..  |..+..|...-..+.+|.  .+.-|+|+.-.
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~l--g~~~~~~~lplgvE~Lp~--~~~FDtVF~MG  190 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFL--GQDPPVFELPLGVEDLPN--LGAFDTVFSMG  190 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHh--CCCccEEEcCcchhhccc--cCCcCEEEEee
Confidence            457999999999999999999876689999955          2222  223333444222335665  56788887655

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=93.42  E-value=0.11  Score=40.71  Aligned_cols=54  Identities=11%  Similarity=-0.101  Sum_probs=40.4

Q ss_pred             hHHHHHHHhhcCCCCcccccccccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc
Q 035595           53 SDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG  113 (178)
Q Consensus        53 ~~~Wd~Fy~rh~~~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~  113 (178)
                      +++|-+++...+.-++|       ..+...+||++||+.|...--++...  ...++|+|+..
T Consensus         3 sRa~~KL~ei~~~~~~~-------~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~   58 (181)
T PF01728_consen    3 SRAAFKLYEIDEKFKIF-------KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP   58 (181)
T ss_dssp             STHHHHHHHHHHTTSSS--------TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred             CHHHHHHHHHHHHCCCC-------CcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence            46788888777654444       22346889999999999999999877  56999999873

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=93.33  E-value=0.082  Score=40.72  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=29.5

Q ss_pred             CCCceeEeeccCCchhHHHhHH-----hhhhheeeeecc
Q 035595           79 HEAALDAKGNFGNGSLIADFSV-----VIKMKILASLVD  112 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~-----~~~~~i~AtD~s  112 (178)
                      .+..+|+++|||-|.+++.|+.     .....++++|.+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~   62 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCN   62 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            4678999999999999999998     555788999976

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=92.76  E-value=0.079  Score=46.93  Aligned_cols=56  Identities=9%  Similarity=-0.061  Sum_probs=40.7

Q ss_pred             ccccc---CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc----cccccCCCcceEEEEccc
Q 035595           74 ELSNC---HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD----GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        74 EL~~~---~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s----~k~~~~g~~N~~F~~~~~  130 (178)
                      ||...   ....+|.++|||+||..--|++.- ...|+++|-|    +++ ..-..|.+|..++.
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~A-a~rlp~~~f~~aDl   84 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKA-AQRLPDATFEEADL   84 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHH-HHhCCCCceecccH
Confidence            66543   356899999999999988888753 4578898866    444 44566788877665

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=92.42  E-value=0.068  Score=44.74  Aligned_cols=73  Identities=11%  Similarity=0.032  Sum_probs=47.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc-ceEEEEcccccCCC---CCC-CCCcc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE-NFSFLVDGEYYSNC---PAV-SGSQN  143 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~~s~~---p~~-~~s~~  143 (178)
                      ..+.+|||||||+|-+++-++...  ..+++.++.+.        -....|.. +++|..+.+...++   +.- ++.-|
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            467899999999999999999763  35888888662        12334554 58888876642222   112 45677


Q ss_pred             eEeeeehh
Q 035595          144 YVILANLK  151 (178)
Q Consensus       144 ~vil~nl~  151 (178)
                      +|.|---|
T Consensus       124 ~VFiDa~K  131 (205)
T PF01596_consen  124 FVFIDADK  131 (205)
T ss_dssp             EEEEESTG
T ss_pred             EEEEcccc
Confidence            77664433

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02366 spermidine synthase

Probab=91.47  E-value=0.19  Score=44.58  Aligned_cols=70  Identities=10%  Similarity=0.132  Sum_probs=42.6

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhh-hheeeeeccc-------ccc---cCC--CcceEEEEcccccCCCCCC-CCCc
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIK-MKILASLVDG-------EYY---NNG--HENFSFLVDGEYYSNCPAV-SGSQ  142 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s~-------k~~---~~g--~~N~~F~~~~~~~s~~p~~-~~s~  142 (178)
                      ....+.+||.||||.|.++.-++.+.. .+++.+|++.       +.-   ..+  ..++.+..++...-+- .. .+.-
T Consensus        88 ~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-~~~~~~y  166 (308)
T PLN02366         88 SIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-NAPEGTY  166 (308)
T ss_pred             hCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-hccCCCC
Confidence            345678999999999999999988632 3677767552       110   112  2357777766521111 11 3567


Q ss_pred             ceEee
Q 035595          143 NYVIL  147 (178)
Q Consensus       143 ~~vil  147 (178)
                      |++|+
T Consensus       167 DvIi~  171 (308)
T PLN02366        167 DAIIV  171 (308)
T ss_pred             CEEEE
Confidence            87775

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=91.11  E-value=0.23  Score=31.91  Aligned_cols=28  Identities=11%  Similarity=0.019  Sum_probs=18.2

Q ss_pred             eEeeccCCchhHHHhHHhhh--hheeeeecc
Q 035595           84 DAKGNFGNGSLIADFSVVIK--MKILASLVD  112 (178)
Q Consensus        84 vLEvGCG~Gnta~pll~~~~--~~i~AtD~s  112 (178)
                      +|++|||+|.+. -+.....  ..++++|.+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~   81 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLS   81 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCC
Confidence            999999999976 2222221  256667766

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=90.94  E-value=0.43  Score=44.53  Aligned_cols=63  Identities=11%  Similarity=0.062  Sum_probs=38.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-----hhheeeeecc--------cccccCCC-cceEEEEcccc-cCCCCCCCCCcce
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-----KMKILASLVD--------GEYYNNGH-ENFSFLVDGEY-YSNCPAVSGSQNY  144 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-----~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~-~s~~p~~~~s~~~  144 (178)
                      ....||.||||+|=.+.-.+...     +.+++|+..+        .+...+|. .+|++..+... ..+    |.-+|+
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----pekvDI  261 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----PEKVDI  261 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH----SS-EEE
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC----CCceeE
Confidence            35789999999999987776653     4588898855        22245555 44777775542 111    446777


Q ss_pred             Ee
Q 035595          145 VI  146 (178)
Q Consensus       145 vi  146 (178)
                      +|
T Consensus       262 IV  263 (448)
T PF05185_consen  262 IV  263 (448)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=90.01  E-value=0.5  Score=39.69  Aligned_cols=66  Identities=15%  Similarity=0.100  Sum_probs=38.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+...||++-||+|-.++|++... ...++|.|..        +-+.-+++++ +.....+.. ..++  .+..|-|||
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~-~~~~--~~~~drvim  175 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAR-EFLP--EGKFDRVIM  175 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GG-G-----TT-EEEEEE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHH-HhcC--ccccCEEEE
Confidence            467899999999999999999832 2379999966        3334456665 555555543 2333  555665554

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=89.80  E-value=0.25  Score=42.01  Aligned_cols=48  Identities=19%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             CCCccccc------ccccccCCCceeEeeccCCchhHHHhHHhh--------hhheeeeecc
Q 035595           65 SGKFFKFT------AELSNCHEAALDAKGNFGNGSLIADFSVVI--------KMKILASLVD  112 (178)
Q Consensus        65 ~~~FFKdR------PEL~~~~~~~~vLEvGCG~Gnta~pll~~~--------~~~i~AtD~s  112 (178)
                      .+.||-.+      -+|....+..+||+-.||+|++....+..+        ...+++.|++
T Consensus        25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~   86 (311)
T PF02384_consen   25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID   86 (311)
T ss_dssp             CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-
T ss_pred             cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCc
Confidence            46777766      344444567789999999999999988742        4577888876

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=89.37  E-value=0.84  Score=40.52  Aligned_cols=89  Identities=10%  Similarity=0.074  Sum_probs=51.8

Q ss_pred             HHHHHHhhcCCCCcccccc---cccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc
Q 035595           55 AWKRFHSRHSSGKFFKFTA---ELSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE  121 (178)
Q Consensus        55 ~Wd~Fy~rh~~~~FFKdRP---EL~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~  121 (178)
                      .|=.-++|..+-=+.||--   ..+...+.++|||.|-|+|+...=|+..+  .-+++..++.+        .....|..
T Consensus        66 d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~  145 (256)
T COG2519          66 DYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG  145 (256)
T ss_pred             HHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc
Confidence            3333355554444444441   11244678999999999999999999654  24667766552        22223555


Q ss_pred             c-eEEEEcccccCCCCCC-CCCcceEee
Q 035595          122 N-FSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus       122 N-~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      | +++...+.    +.++ +.++|.++|
T Consensus       146 d~v~~~~~Dv----~~~~~~~~vDav~L  169 (256)
T COG2519         146 DRVTLKLGDV----REGIDEEDVDAVFL  169 (256)
T ss_pred             cceEEEeccc----cccccccccCEEEE
Confidence            5 66655332    2233 446676665

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=89.06  E-value=0.38  Score=43.51  Aligned_cols=62  Identities=13%  Similarity=0.030  Sum_probs=44.6

Q ss_pred             CceeEeeccCCchhHHHhHHhhhhheeeeecc-------cccccCCCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595           81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD-------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVI  146 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vi  146 (178)
                      ...+++||||.|-..--|+...-.+++-+|-|       .++.+++++...|+.+.+-  ++  + +.|+|++|
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~--Ld--f~ens~DLii  142 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEF--LD--FKENSVDLII  142 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhc--cc--ccccchhhhh
Confidence            45789999999998877776543477777865       5667788888888888773  22  4 55666654

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=88.98  E-value=0.13  Score=46.02  Aligned_cols=31  Identities=16%  Similarity=0.022  Sum_probs=21.9

Q ss_pred             CceeEeeccCCchhHHHhHHhh--hhheeeeecc
Q 035595           81 AALDAKGNFGNGSLIADFSVVI--KMKILASLVD  112 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s  112 (178)
                      ..++|+||||+ |.++|||...  ...++|||++
T Consensus       103 ~v~glDIGTGA-scIYpLLg~~~~~W~fvaTdID  135 (299)
T PF05971_consen  103 KVRGLDIGTGA-SCIYPLLGAKLYGWSFVATDID  135 (299)
T ss_dssp             --EEEEES-TT-TTHHHHHHHHHH--EEEEEES-
T ss_pred             ceEeecCCccH-HHHHHHHhhhhcCCeEEEecCC
Confidence            46899999997 7899999853  6788999987

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=88.04  E-value=0.3  Score=41.34  Aligned_cols=67  Identities=16%  Similarity=0.036  Sum_probs=40.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-------ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      -+.+.|+++|||+|-.-+-..---...+++.|+...+       +.+---|++|.++... .+++.. +-.|.+|+
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdil-dle~~~-g~fDtavi  120 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDIL-DLELKG-GIFDTAVI  120 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeecc-chhccC-CeEeeEEe
Confidence            3578899999999976644333223478899977222       2222224688887765 444333 55555544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=87.70  E-value=0.74  Score=39.74  Aligned_cols=32  Identities=9%  Similarity=-0.155  Sum_probs=23.2

Q ss_pred             CceeEeeccCCchhHHHhHHhh--hhheeeeecc
Q 035595           81 AALDAKGNFGNGSLIADFSVVI--KMKILASLVD  112 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s  112 (178)
                      +.+||++|||.|..+.-....-  ...++++|.+
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s   67 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRS   67 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCC
Confidence            5689999999998776655432  2366778866

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=87.68  E-value=1.6  Score=40.44  Aligned_cols=66  Identities=8%  Similarity=-0.068  Sum_probs=43.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..++|+|||++|.-..-|+..- +.++|+|...-.. -....++.+.......-.|+  .+.+|++|.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG-~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~--~~~vDwvVc  276 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRG-MFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPP--RKNVDWLVC  276 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC-CEEEEEechhcCHhhhCCCCEEEEeccCcccCCC--CCCCCEEEE
Confidence            356799999999999999999876 4999999542110 01223466666555433443  566777663

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=87.52  E-value=0.42  Score=44.34  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=26.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh---------hheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK---------MKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~---------~~i~AtD~s  112 (178)
                      ...+|||.|||+|+++..++....         ..+++.|++
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId   72 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADID   72 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechh
Confidence            346899999999999999987542         356777866

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=87.50  E-value=0.4  Score=43.19  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=48.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecccccccCCCcceEEEEcccccCCCCCC--CCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAV--SGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~--~~s~~~vil~n  149 (178)
                      .+..+|+|||-.|-..+-|+... ...++++|++..+-.....+++|-.+.+. +.+++-  +--++.+-|.|
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~-~~~~~~~~~~~~~~~~is~  129 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHET-EVSGKFPASFGVQFGPISQ  129 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccc-cccCCCccccccccccccc
Confidence            46789999999999999999864 34799999995554444557888877765 333222  44455555555

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=87.30  E-value=0.58  Score=41.99  Aligned_cols=33  Identities=6%  Similarity=-0.028  Sum_probs=24.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +..+|||+|||-|.=..--....-.+++++|++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis   94 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDIS   94 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCC
Confidence            778999999999998777776543489999977

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=86.65  E-value=0.85  Score=40.91  Aligned_cols=40  Identities=10%  Similarity=0.075  Sum_probs=30.0

Q ss_pred             cccccc-CCCceeEeeccCCchhHHHhHHhhh-----hheeeeecc
Q 035595           73 AELSNC-HEAALDAKGNFGNGSLIADFSVVIK-----MKILASLVD  112 (178)
Q Consensus        73 PEL~~~-~~~~~vLEvGCG~Gnta~pll~~~~-----~~i~AtD~s  112 (178)
                      ++++.. .+...|+|+|||.|.=.-.||....     ..++++|+|
T Consensus        68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS  113 (319)
T TIGR03439        68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS  113 (319)
T ss_pred             HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC
Confidence            344433 3456899999999999888887653     358999999

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=85.73  E-value=1.2  Score=35.95  Aligned_cols=66  Identities=15%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhh---------eeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMK---------ILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVS  139 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~---------i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~  139 (178)
                      .+...||+-=||+|+..+.-+-.. ...         ++++|++        ..+...|+.. +.|.+.... .++ -.+
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~-~l~-~~~  104 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAR-ELP-LPD  104 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GG-GGG-GTT
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchh-hcc-ccc
Confidence            456799999999999987755432 122         7899977        2233445544 678775554 344 225


Q ss_pred             CCcceEe
Q 035595          140 GSQNYVI  146 (178)
Q Consensus       140 ~s~~~vi  146 (178)
                      +++|++|
T Consensus       105 ~~~d~Iv  111 (179)
T PF01170_consen  105 GSVDAIV  111 (179)
T ss_dssp             SBSCEEE
T ss_pred             CCCCEEE
Confidence            6777544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=85.36  E-value=1.1  Score=36.91  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=33.8

Q ss_pred             eeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCC-cceEEEEcccc
Q 035595           83 LDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGH-ENFSFLVDGEY  131 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~  131 (178)
                      .|+++-||+|.-++-++.... +++|+|++.        .+.-=|+ .|++|..+...
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~   58 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFF   58 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HH
T ss_pred             EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHH
Confidence            689999999999999999986 899999771        1111253 47999998774

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=85.15  E-value=0.54  Score=45.26  Aligned_cols=23  Identities=13%  Similarity=-0.153  Sum_probs=20.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhh
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI  102 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~  102 (178)
                      .-..+|++|||+||.+.-|+..+
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r~  139 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLERN  139 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhCC
Confidence            44689999999999999999865

; GO: 0008168 methyltransferase activity

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=85.07  E-value=0.82  Score=38.42  Aligned_cols=33  Identities=9%  Similarity=-0.029  Sum_probs=20.1

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhh-eeeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMK-ILASL  110 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~-i~AtD  110 (178)
                      .++.+..++||||+|+.++-.+-..... -+++.
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIE   73 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIE   73 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEE
Confidence            3567899999999999988776544322 44444

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=85.05  E-value=1.6  Score=41.07  Aligned_cols=77  Identities=13%  Similarity=0.133  Sum_probs=52.1

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ...+..+||+++||.|+=..-|+...  +..++|.|++        +....-|+.|+..+..... .+...+++      
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~-~~~~~~~~------  182 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGR-VFGAALPE------  182 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchh-hhhhhchh------
Confidence            44577899999999999998888754  3479999977        3445568888777664432 12222232      


Q ss_pred             eeehhhhhhhccCCCCccc
Q 035595          147 LANLKSYRRVMFDSPDTEE  165 (178)
Q Consensus       147 l~nl~~~~~~~~~~~~~~~  165 (178)
                           .+.+|+.|-|-+-+
T Consensus       183 -----~fD~ILvDaPCSG~  196 (470)
T PRK11933        183 -----TFDAILLDAPCSGE  196 (470)
T ss_pred             -----hcCeEEEcCCCCCC
Confidence                 35677777776543

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=85.00  E-value=0.27  Score=42.44  Aligned_cols=53  Identities=17%  Similarity=0.116  Sum_probs=37.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccCCC-cceEEEEcccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNNGH-ENFSFLVDGEY  131 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~g~-~N~~F~~~~~~  131 (178)
                      ..+.+|||||+++|-+++-++...  ..+++.+|...+        ...+|+ .++++..+...
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~  141 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL  141 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence            367899999999999999888754  347888886622        233454 34777776653

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=84.68  E-value=1.3  Score=37.26  Aligned_cols=64  Identities=16%  Similarity=0.087  Sum_probs=41.3

Q ss_pred             eEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCC-cceEeeeeh
Q 035595           84 DAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGS-QNYVILANL  150 (178)
Q Consensus        84 vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s-~~~vil~nl  150 (178)
                      |.+|||-=|-..+-|+.... .+++|+|++        +.....|..+ |+++.++-...++   ++. +|+|||+++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC---CCCCCCEEEEecC
Confidence            68999999999999998752 478999977        3334456444 7777755432222   455 899999875

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=84.48  E-value=2  Score=39.20  Aligned_cols=72  Identities=15%  Similarity=0.115  Sum_probs=51.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh---hheeeeecc--------cccccCCCcce-EEEEcccc-cCCCCCCCCCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK---MKILASLVD--------GEYYNNGHENF-SFLVDGEY-YSNCPAVSGSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~---~~i~AtD~s--------~k~~~~g~~N~-~F~~~~~~-~s~~p~~~~s~~~v  145 (178)
                      ..+.+||+|-||.|.-+|..+....   ..++=.|.+        +-....|.+++ +|.+.++- ...=-+|.+..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            4678999999999999999998653   244445544        44567789997 99998772 12224556667777


Q ss_pred             eeeeh
Q 035595          146 ILANL  150 (178)
Q Consensus       146 il~nl  150 (178)
                      |+..|
T Consensus       214 iVsGL  218 (311)
T PF12147_consen  214 IVSGL  218 (311)
T ss_pred             EEecc
Confidence            77766

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=83.22  E-value=1.1  Score=40.03  Aligned_cols=63  Identities=10%  Similarity=0.140  Sum_probs=44.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc----cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD----GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s----~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      ...++|+||.|-|+....+.+..+ +++||.+|    .++...|...++-   .+- .   ......|+++.-||
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~kg~~vl~~---~~w-~---~~~~~fDvIscLNv  160 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKKGFTVLDI---DDW-Q---QTDFKFDVISCLNV  160 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhCCCeEEeh---hhh-h---ccCCceEEEeehhh
Confidence            356899999999999999999987 89999988    4555656554311   111 0   11345788887775

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=82.55  E-value=1.7  Score=41.31  Aligned_cols=34  Identities=15%  Similarity=-0.012  Sum_probs=27.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG  113 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~  113 (178)
                      ....||+||||.|-.-+--+..-..+++|+.+++
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~  210 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE  210 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH
Confidence            3578999999999888777666555999999883

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=82.52  E-value=1.7  Score=38.55  Aligned_cols=51  Identities=18%  Similarity=0.109  Sum_probs=34.9

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeecc---------------cccccCCCcceEEEEcccc
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD---------------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s---------------~k~~~~g~~N~~F~~~~~~  131 (178)
                      ...+.+||||-|...+.|++.. ...|++..++               ...+.....|+...+.++-
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~nam  127 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAM  127 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccch
Confidence            3567899999999999998864 3456664433               2334445777888776663

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=80.77  E-value=1.1  Score=41.04  Aligned_cols=49  Identities=14%  Similarity=0.067  Sum_probs=35.4

Q ss_pred             ceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccCCCcceEEEEccc
Q 035595           82 ALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNNGHENFSFLVDGE  130 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~g~~N~~F~~~~~  130 (178)
                      .+|||+-||+|..+++.+...  ...+++.|++..        +..++..++.+...+.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da  104 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA  104 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH
Confidence            589999999999999999863  248999997732        2334555566655444

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=80.65  E-value=3.2  Score=36.29  Aligned_cols=76  Identities=12%  Similarity=0.082  Sum_probs=48.5

Q ss_pred             CCcccccccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCC
Q 035595           66 GKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPA  137 (178)
Q Consensus        66 ~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~  137 (178)
                      .|.--+|||+..   .++|||+|.|.|=-++--+......++++|+.        -.+..+| -++.|+..+..+ .   
T Consensus        68 AR~i~~~PetVr---gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g-~---  139 (218)
T COG3897          68 ARYIDDHPETVR---GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG-S---  139 (218)
T ss_pred             HHHHhcCccccc---cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC-C---
Confidence            356667788764   67999999999977766555544467787755        1122223 347777766653 2   


Q ss_pred             CCCCcceEeeeeh
Q 035595          138 VSGSQNYVILANL  150 (178)
Q Consensus       138 ~~~s~~~vil~nl  150 (178)
                       ++..|++++-.|
T Consensus       140 -~~~~Dl~LagDl  151 (218)
T COG3897         140 -PPAFDLLLAGDL  151 (218)
T ss_pred             -CcceeEEEeece
Confidence             455787776543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=80.45  E-value=0.64  Score=39.95  Aligned_cols=71  Identities=10%  Similarity=0.056  Sum_probs=46.8

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcc-eEEEEc-ccccCCCCCCCCCcceE
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHEN-FSFLVD-GEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N-~~F~~~-~~~~s~~p~~~~s~~~v  145 (178)
                      ..++.+|||||-+.|-.++-++...  .-+++.+|++        +.....|+++ +.+... ....-+...+.++-|+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            3578999999999999999999864  2478999977        3335567777 555553 22111111346677766


Q ss_pred             eee
Q 035595          146 ILA  148 (178)
Q Consensus       146 il~  148 (178)
                      .|-
T Consensus       137 FID  139 (219)
T COG4122         137 FID  139 (219)
T ss_pred             EEe
Confidence            654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.85
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.82
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.69
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.66
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.62
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.6
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.6
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.57
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.51
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.49
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.48
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.47
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.46
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.45
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.43
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.41
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.4
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.38
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.37
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.37
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.36
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.35
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.35
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.34
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.33
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.33
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.33
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.31
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.29
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.29
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.29
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.28
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.28
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.28
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.27
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.27
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.27
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.27
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.27
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.27
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.25
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.25
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.24
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.24
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.24
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.23
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.23
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.23
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.22
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.22
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.22
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.22
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.21
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.21
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.21
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.2
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.2
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.2
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.2
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.2
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.19
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.19
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.18
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.17
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.17
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.17
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.17
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.16
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.16
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.16
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.16
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.15
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.15
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.15
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.15
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.13
3ocj_A	305	Putative exported protein; structural genomics, PS	98.13
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.12
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.12
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.12
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.11
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.11
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.11
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.1
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.1
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.1
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.1
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.09
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.09
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.08
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.08
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.08
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.07
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.07
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.06
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.06
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.06
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.06
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.05
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.04
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.04
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.04
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.03
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.03
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.03
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.03
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.03
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.02
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.02
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.02
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.01
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.01
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.99
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.99
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	97.99
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.98
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	97.98
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.97
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.96
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.96
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.96
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.96
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.95
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.95
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.95
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.94
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.94
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.92
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.92
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.92
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.91
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.91
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.91
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.9
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.9
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.9
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.89
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.89
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.89
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.87
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.87
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.86
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.85
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.83
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.82
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.82
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.81
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.8
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.8
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.8
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.79
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.79
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.78
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.78
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.76
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.76
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.75
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.74
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.74
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.74
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.73
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.73
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.72
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.72
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.72
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.72
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.71
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.69
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.68
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.67
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	97.67
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.66
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.66
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.66
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.66
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.65
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.64
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.63
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.63
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.62
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.62
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.62
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.62
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.61
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.6
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.6
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.6
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.59
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.59
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.58
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.57
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.56
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.55
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	97.55
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.54
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.54
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.54
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.54
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.52
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.51
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.47
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.47
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.46
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.46
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.42
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.41
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.41
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.39
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.36
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.36
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.36
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.36
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.35
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.31
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.29
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.27
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.27
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.26
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.25
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.23
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.22
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.19
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.18
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.18
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.18
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.17
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.1
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.09
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.09
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.08
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.08
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.08
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.07
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.07
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.06
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.05
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.01
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.0
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.0
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.99
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.96
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.92
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.9
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.89
2o07_A	304	Spermidine synthase; structural genomics, structur	96.87
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.85
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.83
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.77
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.74
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.73
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	96.73
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.65
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.65
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.64
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	96.55
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.51
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	96.48
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.4
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	96.07
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.95
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	95.93
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	95.82
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.52
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.39
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	94.03
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	93.81
3lkd_A	542	Type I restriction-modification system methyltrans	93.74
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	92.8
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	92.42
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	92.07
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	91.35
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.21
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	89.73
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	89.45
3cvo_A	202	Methyltransferase-like protein of unknown functio;	88.7
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	87.24
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	87.14
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	87.06
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	86.98
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	86.84
3khk_A	544	Type I restriction-modification system methylation	86.09
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	83.77
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	82.71

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.85  E-value=5.5e-09  Score=78.72  Aligned_cols=96  Identities=8%  Similarity=-0.028  Sum_probs=64.8

Q ss_pred             cchHHHHHHHhhcCC---CCcccccccc----cc-cCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------c
Q 035595           51 KDSDAWKRFHSRHSS---GKFFKFTAEL----SN-CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------Y  116 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~---~~FFKdRPEL----~~-~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~  116 (178)
                      ...++||.||..+..   ..+|++.+.+    .. ..+..+|||+|||+|..+..++......++++|++...      .
T Consensus         5 ~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~   84 (215)
T 2pxx_A            5 REVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQAC   84 (215)
T ss_dssp             GCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred             cchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Confidence            356899999976641   3566666322    11 14678999999999999999998742389999987211      1


Q ss_pred             cCCCcceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595          117 NNGHENFSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus       117 ~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      ..+..++.|..+... .++  + .++.|+||..+
T Consensus        85 ~~~~~~i~~~~~d~~-~~~--~~~~~fD~v~~~~  115 (215)
T 2pxx_A           85 YAHVPQLRWETMDVR-KLD--FPSASFDVVLEKG  115 (215)
T ss_dssp             TTTCTTCEEEECCTT-SCC--SCSSCEEEEEEES
T ss_pred             cccCCCcEEEEcchh-cCC--CCCCcccEEEECc
Confidence            112357888887654 232  3 57899998643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.82  E-value=2e-09  Score=86.79  Aligned_cols=61  Identities=8%  Similarity=-0.216  Sum_probs=43.8

Q ss_pred             cchHHHHHHHhhcCCCCcccc--c-------cccccc--CCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           51 KDSDAWKRFHSRHSSGKFFKF--T-------AELSNC--HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKd--R-------PEL~~~--~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      ++..+|+.||+++. +.||||  +       +++...  .+..+|||||||+|-....++.....+++|+|++
T Consensus        16 ~~~~~~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s   87 (263)
T 2a14_A           16 LPRDYLATYYSFDG-SPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFT   87 (263)
T ss_dssp             CHHHHHHHHCCCCC-SCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESC
T ss_pred             CHHHHHHHhcCCCc-ccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeecccc
Confidence            46689999998885 689998  3       344322  3567999999999966554443322379999988

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.69  E-value=1.1e-08  Score=79.81  Aligned_cols=61  Identities=11%  Similarity=-0.087  Sum_probs=45.7

Q ss_pred             cchHHHHHHHhhcCCCCccccc----c-----ccccc--CCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFT----A-----ELSNC--HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdR----P-----EL~~~--~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      .+..+|+.||..+. +.|++++    |     ++...  .+..+|||||||+|..++.++......++++|.+
T Consensus        17 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s   88 (265)
T 2i62_A           17 NPRDYLEKYYSFGS-RHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYT   88 (265)
T ss_dssp             CHHHHHHHHHCCCS-SCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESC
T ss_pred             CHHHHHHHHhCcCC-cchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEecCC
Confidence            35679999997775 5777665    4     44332  3457999999999999988886543479999987

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.66  E-value=3.8e-08  Score=80.72  Aligned_cols=93  Identities=11%  Similarity=-0.008  Sum_probs=64.3

Q ss_pred             chHHHHHHHhhcCCCCccccc--cccc-------ccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------c
Q 035595           52 DSDAWKRFHSRHSSGKFFKFT--AELS-------NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------E  114 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdR--PEL~-------~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k  114 (178)
                      +.++|+.+|.+.. ..|....  |.|.       ...+..+|||+|||+|..+..|+..- ..++|+|++.        +
T Consensus        32 ~~~~Wd~~y~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G-~~V~gvD~S~~~i~~a~~~  109 (252)
T 2gb4_A           32 TLEDWKEKWVTRH-ISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRG-HTVVGVEISEIGIREFFAE  109 (252)
T ss_dssp             CHHHHHHHHHHTC-CTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCC-CCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCC-CeEEEEECCHHHHHHHHHh
Confidence            6789999998764 3554444  3221       11356899999999999999999874 4899999882        1


Q ss_pred             ccc-----------------CCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595          115 YYN-----------------NGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus       115 ~~~-----------------~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ...                 ....+++|.++... .+++...++.|+|+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~-~l~~~~~~~FD~V~~  158 (252)
T 2gb4_A          110 QNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF-DLPRANIGKFDRIWD  158 (252)
T ss_dssp             TTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT-TGGGGCCCCEEEEEE
T ss_pred             cccccccccccccccccccccCCCceEEEECccc-cCCcccCCCEEEEEE
Confidence            110                 12357999998775 455433478999874

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.62  E-value=2.7e-08  Score=74.60  Aligned_cols=66  Identities=21%  Similarity=0.220  Sum_probs=50.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.|+.. ..+++|+|++        ++....|..|++|..+... .++.-.+++.|+|++
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~-~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE-NLDHYVREPIRAAIF   95 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGG-GGGGTCCSCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHH-HHHhhccCCcCEEEE
Confidence            5679999999999999999988 4589999987        3444557788999995554 433333778998854

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.60  E-value=6.1e-08  Score=72.35  Aligned_cols=92  Identities=9%  Similarity=-0.060  Sum_probs=62.5

Q ss_pred             cchHHHHHHHhhcCCCCcccccccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN  122 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N  122 (178)
                      .+..+|+..|.........   -++....+..+|||+|||+|..+..++... ..++++|++        ++....+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~   81 (199)
T 2xvm_A            6 RDENYFTDKYELTRTHSEV---LEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDN   81 (199)
T ss_dssp             CCTTHHHHHHTCCCCCHHH---HHHTTTSCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTT
T ss_pred             echHHHhhhhccccccHHH---HHHhhccCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCC
Confidence            3456899888543211111   122233456799999999999999999874 489999987        2233446668


Q ss_pred             eEEEEcccccCCCCCCCCCcceEeeee
Q 035595          123 FSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus       123 ~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +.|...... .++.  +++.|+|+..+
T Consensus        82 ~~~~~~d~~-~~~~--~~~~D~v~~~~  105 (199)
T 2xvm_A           82 LHTRVVDLN-NLTF--DRQYDFILSTV  105 (199)
T ss_dssp             EEEEECCGG-GCCC--CCCEEEEEEES
T ss_pred             cEEEEcchh-hCCC--CCCceEEEEcc
Confidence            999887665 3443  78899998764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.60  E-value=9.8e-08  Score=72.97  Aligned_cols=94  Identities=6%  Similarity=-0.007  Sum_probs=62.7

Q ss_pred             cchHHHHHHHhhcCCCCcc----cc-c-----ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc------
Q 035595           51 KDSDAWKRFHSRHSSGKFF----KF-T-----AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE------  114 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FF----Kd-R-----PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k------  114 (178)
                      ...+.|++.|.....-.|.    .. +     ..+....+..+|||+|||+|..+..|+.... .++++|++..      
T Consensus        12 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~   90 (216)
T 3ofk_A           12 NTYQSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRAC   90 (216)
T ss_dssp             SHHHHHHHHHTSSSGGGTTTCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHH
T ss_pred             chHHHHHHHhcCCCCcccccCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            4567899999653321222    11 1     1223345678999999999999999998874 8999998721      


Q ss_pred             cccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595          115 YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus       115 ~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .......++.|...... .++  .+++.|+|++.
T Consensus        91 ~~~~~~~~~~~~~~d~~-~~~--~~~~fD~v~~~  121 (216)
T 3ofk_A           91 QRTKRWSHISWAATDIL-QFS--TAELFDLIVVA  121 (216)
T ss_dssp             HHTTTCSSEEEEECCTT-TCC--CSCCEEEEEEE
T ss_pred             HhcccCCCeEEEEcchh-hCC--CCCCccEEEEc
Confidence            11112337999987765 344  36889999986

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.57  E-value=9.2e-08  Score=74.70  Aligned_cols=68  Identities=6%  Similarity=0.003  Sum_probs=52.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|.++..|+......++++|.+        +++...|.. |+.|..+... .+++  .++.|+|+..+
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~~--~~~fD~V~~~~  111 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYVA--NEKCDVAACVG  111 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCCC--SSCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCCc--CCCCCEEEECC
Confidence            4678999999999999999998765588999987        233445664 7999987765 4554  78899999743

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.51  E-value=2.3e-07  Score=70.71  Aligned_cols=93  Identities=11%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             hHHHHHHHhhcCCCCcccccccccc-cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC---
Q 035595           53 SDAWKRFHSRHSSGKFFKFTAELSN-CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH---  120 (178)
Q Consensus        53 ~~~Wd~Fy~rh~~~~FFKdRPEL~~-~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~---  120 (178)
                      .++|+.+|..... .-..-...+.. ..+..+|||+|||+|..+..++... .+++++|++        ++....+.   
T Consensus         3 ~~yw~~~~~~~~~-~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~   80 (235)
T 3sm3_A            3 ESYWEKVSGKNIP-SSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQK   80 (235)
T ss_dssp             ----------------CCCCTTHHHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSS
T ss_pred             hhHHHHHhhccCC-CHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccc
Confidence            4689998864321 00000011111 1356899999999999999999885 489999987        22233333   


Q ss_pred             --cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595          121 --ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus       121 --~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                        .++.|..+... .++ --.++.|+|++.+
T Consensus        81 ~~~~~~~~~~d~~-~~~-~~~~~~D~v~~~~  109 (235)
T 3sm3_A           81 TGGKAEFKVENAS-SLS-FHDSSFDFAVMQA  109 (235)
T ss_dssp             SSCEEEEEECCTT-SCC-SCTTCEEEEEEES
T ss_pred             cCcceEEEEeccc-ccC-CCCCceeEEEEcc
Confidence              35788887664 333 2267899998754

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.49  E-value=1.4e-07  Score=73.47  Aligned_cols=93  Identities=9%  Similarity=0.097  Sum_probs=62.9

Q ss_pred             chHHHHHHHhhcCCCCccccc--cccc---c--cCCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccc
Q 035595           52 DSDAWKRFHSRHSSGKFFKFT--AELS---N--CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYY  116 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdR--PEL~---~--~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~  116 (178)
                      +...|+.+|.... ..|...+  |.|.   .  ..+..+|||||||+|..+..|+... ..++++|++.        +..
T Consensus        32 ~~~~w~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~  109 (235)
T 3lcc_A           32 EEGGWEKCWEEEI-TPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYG  109 (235)
T ss_dssp             HHHHHHHHHHTTC-CTTCCSSCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhcCC-CCcccCCCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhh
Confidence            5678999997764 4565444  2221   1  1244699999999999999998754 4799999872        222


Q ss_pred             cC-CCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595          117 NN-GHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus       117 ~~-g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .. ...+++|..+... .++  .+++.|+|+..+
T Consensus       110 ~~~~~~~v~~~~~d~~-~~~--~~~~fD~v~~~~  140 (235)
T 3lcc_A          110 SSPKAEYFSFVKEDVF-TWR--PTELFDLIFDYV  140 (235)
T ss_dssp             TSGGGGGEEEECCCTT-TCC--CSSCEEEEEEES
T ss_pred             ccCCCcceEEEECchh-cCC--CCCCeeEEEECh
Confidence            21 3456999987775 333  245899998654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.48  E-value=3.6e-08  Score=78.78  Aligned_cols=69  Identities=17%  Similarity=0.167  Sum_probs=51.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      +..+|||||||+|..++.++... ...++|+|++        +++...|..|+.|..+....-++..+ +++.|.|++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            45789999999999999999875 3469999987        34556788999999887642222123 6788888764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.47  E-value=1.9e-07  Score=72.37  Aligned_cols=68  Identities=10%  Similarity=0.173  Sum_probs=51.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      +..+|||||||+|..++.++... ...++|+|++        +++...|..|+.|..+... .++..+ +++.|+|++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS-DLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSS-CGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHH-HHHhhcCCCCCCEEEEE
Confidence            35689999999999999999875 3589999987        3444457789999998775 344445 5678988754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.46  E-value=4e-08  Score=81.78  Aligned_cols=67  Identities=15%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .++.+|||+|||+|.++++++... .-+++|+|++        ++++..|+. |++| .+...    ...++..|+|++-
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~-~d~~~----~~~~~~~DvVLa~  122 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF-LNKES----DVYKGTYDVVFLL  122 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE-ECCHH----HHTTSEEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE-ecccc----cCCCCCcChhhHh
Confidence            457899999999999999996541 2289999987        566677888 7888 32222    1236778999887


Q ss_pred             eh
Q 035595          149 NL  150 (178)
Q Consensus       149 nl  150 (178)
                      |+
T Consensus       123 k~  124 (200)
T 3fzg_A          123 KM  124 (200)
T ss_dssp             TC
T ss_pred             hH
Confidence            64

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.45  E-value=7e-07  Score=69.74  Aligned_cols=69  Identities=9%  Similarity=-0.072  Sum_probs=52.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++.....+++++|++        ++....|..+ ++|..+... .+| --.++.|+|+..+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~  122 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD-NLP-FQNEELDLIWSEG  122 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCS-SCTTCEEEEEEES
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh-hCC-CCCCCEEEEEecC
Confidence            4567999999999999999999864489999987        3344556665 999987764 443 1157899998654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.43  E-value=3.6e-07  Score=69.10  Aligned_cols=67  Identities=15%  Similarity=0.059  Sum_probs=52.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc----cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD----GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s----~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... .+++++|++    +.+...+..++.|..+... .+  ..+++.|+|++.+
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~-~~--~~~~~~D~v~~~~  115 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLF-DW--TPDRQWDAVFFAH  115 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGGCCTTEEEEECCTT-SC--CCSSCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHhcCCCCeEEEecccc-cC--CCCCceeEEEEec
Confidence            456799999999999999999885 489999987    2333356678999987765 22  2268899999865

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.41  E-value=3e-07  Score=69.54  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=51.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..+..++...  ...++++|++        ++....|. .++.|..+... .++..++++.|+|++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ-NMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGG-GGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH-HHhhhccCCceEEEE
Confidence            356799999999999999999874  2489999977        33344565 67999987764 343344678998875


Q ss_pred             e
Q 035595          148 A  148 (178)
Q Consensus       148 ~  148 (178)
                      .
T Consensus       100 ~  100 (197)
T 3eey_A          100 N  100 (197)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.40  E-value=8.5e-07  Score=68.52  Aligned_cols=94  Identities=11%  Similarity=-0.010  Sum_probs=61.6

Q ss_pred             cccchHHHHHHHhhcCCCCccccc----ccccc-cCCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------c
Q 035595           49 AEKDSDAWKRFHSRHSSGKFFKFT----AELSN-CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------E  114 (178)
Q Consensus        49 ~~~~~~~Wd~Fy~rh~~~~FFKdR----PEL~~-~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k  114 (178)
                      +..-+..||....+..  ..+...    -++.. ..+..+|||+|||+|..+..++... ...++++|++.        +
T Consensus        10 f~~~a~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~   87 (234)
T 3dtn_A           10 FDAVSGKYDEQRRKFI--PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR   87 (234)
T ss_dssp             CCHHHHHHHHHHHHHC--TTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHhC--cCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh
Confidence            3344566777665442  122211    12222 3466899999999999999999874 45899999872        2


Q ss_pred             cccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595          115 YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus       115 ~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ....+  ++.|..+... .+++.  ++.|+|++.+
T Consensus        88 ~~~~~--~~~~~~~d~~-~~~~~--~~fD~v~~~~  117 (234)
T 3dtn_A           88 FRGNL--KVKYIEADYS-KYDFE--EKYDMVVSAL  117 (234)
T ss_dssp             TCSCT--TEEEEESCTT-TCCCC--SCEEEEEEES
T ss_pred             hccCC--CEEEEeCchh-ccCCC--CCceEEEEeC
Confidence            22222  8999987765 44433  8999999875

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.38  E-value=1.7e-07  Score=73.70  Aligned_cols=66  Identities=12%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      ..+|||||||+|..++.|+... ...++|+|++        +++...|..|+.|..+... .++..+ +++.|.|++
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~-~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDAD-TLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGG-GHHHHCCTTSCCEEEE
T ss_pred             CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHH-HHHhhcCcCCcCEEEE
Confidence            4579999999999999999874 4579999987        3344567889999987764 233224 567887654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.37  E-value=4.4e-07  Score=68.18  Aligned_cols=94  Identities=7%  Similarity=0.037  Sum_probs=60.7

Q ss_pred             chHHHHHHHhhcCCCCccccc-cccccc--CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC
Q 035595           52 DSDAWKRFHSRHSSGKFFKFT-AELSNC--HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH  120 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdR-PEL~~~--~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~  120 (178)
                      ....|+.++..... .++..- ..+...  ..+.+|||+|||+|..+..|+......++++|.+        ++....|.
T Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~   91 (219)
T 3dlc_A           13 GAKNMDEISKTLFA-PIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL   91 (219)
T ss_dssp             HHHHHHHHHHTTTT-THHHHHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             chhhHHHHHHHhhc-cccHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc
Confidence            46788888854331 221111 111111  1233999999999999999998754589999987        23334454


Q ss_pred             c-ceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595          121 E-NFSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus       121 ~-N~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      . ++.|..+... .++  + .++.|+|++.+
T Consensus        92 ~~~~~~~~~d~~-~~~--~~~~~~D~v~~~~  119 (219)
T 3dlc_A           92 NDRIQIVQGDVH-NIP--IEDNYADLIVSRG  119 (219)
T ss_dssp             TTTEEEEECBTT-BCS--SCTTCEEEEEEES
T ss_pred             cCceEEEEcCHH-HCC--CCcccccEEEECc
Confidence            3 7999887764 333  3 57899999876

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.37  E-value=5.2e-07  Score=71.22  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=51.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+.... .++++|++        ++....|..|+.|..+... .+|  + +++.|+|+..+
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~l~--~~~~~fD~V~~~~  111 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QMP--FTDERFHIVTCRI  111 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCC--SCTTCEEEEEEES
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHH-hCC--CCCCCEEEEEEhh
Confidence            4678999999999999999998775 89999987        2334557778999987764 333  3 57899998764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.36  E-value=2.4e-07  Score=73.28  Aligned_cols=72  Identities=13%  Similarity=-0.031  Sum_probs=53.4

Q ss_pred             CCceeEeeccCCchhHHHhHHh-hhhheeeeeccc--------ccccCCCcceEEEEcccccCCC--CCCCCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNC--PAVSGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~--p~~~~s~~~vil~  148 (178)
                      +..+|||||||+|..+++|+.. ...+++++|++.        .....|..|++|..+... .++  +...++.|+|+..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAE-TFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHH-HHTTCTTTTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHH-HhcccccccCCccEEEEe
Confidence            5679999999999999999964 234799999873        233457778999987663 233  4456889999987


Q ss_pred             ehhh
Q 035595          149 NLKS  152 (178)
Q Consensus       149 nl~~  152 (178)
                      .+..
T Consensus       149 ~~~~  152 (240)
T 1xdz_A          149 AVAR  152 (240)
T ss_dssp             CCSC
T ss_pred             ccCC
Confidence            6543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.35  E-value=4.9e-07  Score=72.49  Aligned_cols=68  Identities=7%  Similarity=0.088  Sum_probs=52.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ...+|||||||+|..+..|+... ..++++|++        ++....|. .++.|..+... .+++..+++.|+|++.+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~~  144 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQ-DVASHLETPVDLILFHA  144 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGG-GTGGGCSSCEEEEEEES
T ss_pred             CCCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHH-HhhhhcCCCceEEEECc
Confidence            35799999999999999999884 589999987        33444566 68999998775 45544578999999875

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.35  E-value=6.9e-07  Score=70.93  Aligned_cols=69  Identities=10%  Similarity=-0.022  Sum_probs=52.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++......++++|++        ++....|+. +++|..+... .+| --.++.|+|+..+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~~fD~i~~~~  122 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD-DLP-FRNEELDLIWSEG  122 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC-CCTTCEEEEEESS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh-hCC-CCCCCEEEEEEcC
Confidence            4678999999999999999998854589999987        233445664 4999987764 343 1157899998765

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.34  E-value=5.5e-07  Score=70.81  Aligned_cols=70  Identities=16%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ...+..+|||||||+|..+..++.... .++++|++        ++....|..|+.|..+... .+| --.++.|+|+..
T Consensus        18 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~-~~~~~fD~v~~~   94 (239)
T 1xxl_A           18 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SLP-FPDDSFDIITCR   94 (239)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT-BCC-SCTTCEEEEEEE
T ss_pred             CcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccc-cCC-CCCCcEEEEEEC
Confidence            345678999999999999999998774 89999987        2333456678999987764 343 125789999877


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      +
T Consensus        95 ~   95 (239)
T 1xxl_A           95 Y   95 (239)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.33  E-value=5.6e-07  Score=68.66  Aligned_cols=69  Identities=10%  Similarity=-0.023  Sum_probs=52.1

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ..+..+|||+|||+|..+..|+... .+++++|++        ++....|..|+.|.........++  .++.|+|++.+
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~i~~~~  151 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA--RAPFDAIIVTA  151 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--GCCEEEEEESS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc--CCCccEEEEcc
Confidence            3567899999999999999999885 489999987        333445777899999776532222  56789888753

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.33  E-value=2.7e-07  Score=74.60  Aligned_cols=68  Identities=16%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc--------------ccCCCcceEEEEcccccCCCCCC-CCCcc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY--------------YNNGHENFSFLVDGEYYSNCPAV-SGSQN  143 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~--------------~~~g~~N~~F~~~~~~~s~~p~~-~~s~~  143 (178)
                      +..+|||||||+|..++.|+... ...++++|++.+.              ...+..|+.|.++.....++.-+ .++.|
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            45689999999999999999864 3579999987322              12577899999987753344334 57888


Q ss_pred             eEee
Q 035595          144 YVIL  147 (178)
Q Consensus       144 ~vil  147 (178)
                      .|++
T Consensus       126 ~v~~  129 (235)
T 3ckk_A          126 KMFF  129 (235)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8765

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.33  E-value=1.4e-06  Score=67.06  Aligned_cols=65  Identities=15%  Similarity=0.059  Sum_probs=47.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc------------cccCCCcceEEEEcccccCCCCCCCCCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE------------YYNNGHENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k------------~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      .+..+|||||||+|..+..|+... ..+++++|++..            ....+..|+.|.++... .+|. ..++ |.+
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~-~l~~-~~~~-d~v  102 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAE-RLPP-LSGV-GEL  102 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCST-TCCS-CCCE-EEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchh-hCCC-CCCC-CEE
Confidence            456899999999999999999974 458999998843            22467779999997775 3442 2334 555


Q ss_pred             e
Q 035595          146 I  146 (178)
Q Consensus       146 i  146 (178)
                      +
T Consensus       103 ~  103 (218)
T 3mq2_A          103 H  103 (218)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.31  E-value=3.8e-07  Score=71.59  Aligned_cols=67  Identities=7%  Similarity=-0.077  Sum_probs=47.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      .+..+|||||||+|..+..|+......++++|++        ++....+ .++.|..+... .+.+.+ .++.|+|+.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~-~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWE-DVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHH-HHGGGSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHH-HhhcccCCCceEEEEE
Confidence            3567999999999999999977433378999987        2333334 57888887664 221223 578999987

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.29  E-value=8.6e-07  Score=71.06  Aligned_cols=66  Identities=11%  Similarity=0.025  Sum_probs=47.4

Q ss_pred             CCceeEeeccCCchhHHHhHHh-hhhheeeeecc-c-----------ccccCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVD-G-----------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s-~-----------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      +..+|||||||+|..+..|+.. ....++++|++ .           ++...|..|+.|..+... .+|....+.++.+.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~-~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAE-SLPFELKNIADSIS  102 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTT-BCCGGGTTCEEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHH-HhhhhccCeEEEEE
Confidence            5678999999999999999853 23478999988 2           223567889999887765 55543345555444

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.29  E-value=2.5e-07  Score=70.20  Aligned_cols=67  Identities=12%  Similarity=-0.034  Sum_probs=49.3

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++.....+++++|++        +++...|..|++|..+... ..++.+ .++.|+|++
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~fD~i~~  119 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVA-AVVAAGTTSPVDLVLA  119 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHH-HHHHHCCSSCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHH-HHHhhccCCCccEEEE
Confidence            467899999999999998887544479999977        3344456678999997764 222223 577888776

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.29  E-value=9e-07  Score=67.53  Aligned_cols=69  Identities=19%  Similarity=0.167  Sum_probs=52.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..+..++...  ...++++|.+        ++....+..|+.|..+... .++ --.++.|+|++.
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~  113 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KIP-LPDNTVDFIFMA  113 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BCS-SCSSCEEEEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc-cCC-CCCCCeeEEEee
Confidence            456799999999999999999876  3489999977        3344556678999987764 332 125789999876


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      +
T Consensus       114 ~  114 (219)
T 3dh0_A          114 F  114 (219)
T ss_dssp             S
T ss_pred             h
Confidence            5

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.28  E-value=1.4e-06  Score=70.76  Aligned_cols=66  Identities=6%  Similarity=0.008  Sum_probs=51.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++.....+++++|++        ++....|.. ++.|..+... .+    +++.|+|+..+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~----~~~fD~v~~~~  145 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-EF----DEPVDRIVSLG  145 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG-GC----CCCCSEEEEES
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH-Hc----CCCccEEEEcc
Confidence            4678999999999999999998744689999987        334455665 7999887664 22    78999998864

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.28  E-value=1.3e-06  Score=64.15  Aligned_cols=65  Identities=11%  Similarity=-0.004  Sum_probs=49.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc--eEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN--FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N--~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..+..++.. ...++++|++        ++....+..+  +.|.........+   +++.|+|++
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~  125 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---DRKYNKIIT  125 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---TSCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---cCCceEEEE
Confidence            36679999999999999999988 4589999976        3334457777  9998876642222   567898886

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.28  E-value=1.5e-06  Score=69.40  Aligned_cols=66  Identities=11%  Similarity=-0.059  Sum_probs=50.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc---cCCCcceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY---NNGHENFSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~---~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++... .+++++|++...-   .... |+.|..+... .+|  + .++.|+|+..+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~-~~~--~~~~~fD~v~~~~  102 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-QVEWFTGYAE-NLA--LPDKSVDGVISIL  102 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-TEEEECCCTT-SCC--SCTTCBSEEEEES
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-CCEEEECchh-hCC--CCCCCEeEEEEcc
Confidence            467899999999999999999854 4899999883221   1112 8999987764 333  3 58999999877

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.27  E-value=1.2e-06  Score=66.53  Aligned_cols=68  Identities=13%  Similarity=-0.096  Sum_probs=50.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      +..+|||+|||+|..+..++... ...++++|.+.        .....|..|+.|...... ..++  +++.|+|+...+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~--~~~~D~i~~~~~  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVE-EFPS--EPPFDGVISRAF  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTT-TSCC--CSCEEEEECSCS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchh-hCCc--cCCcCEEEEecc
Confidence            36799999999999999999863 35899999772        333457778999887665 2222  467899886443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.27  E-value=1.5e-07  Score=75.31  Aligned_cols=95  Identities=8%  Similarity=-0.003  Sum_probs=60.9

Q ss_pred             cchHHHHHHHhhcCCCCc--cccc-ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------c----
Q 035595           51 KDSDAWKRFHSRHSSGKF--FKFT-AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------Y----  115 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~F--FKdR-PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~----  115 (178)
                      ..++.|+.|+.... .++  +++. -+++...+..+|||||||+|..+..|+.... .++++|++..        .    
T Consensus        26 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~  103 (293)
T 3thr_A           26 EAARVWQLYIGDTR-SRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRR  103 (293)
T ss_dssp             HHHHHHHHHHTCCS-CBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhcCc-chHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcc
Confidence            35668999985443 222  2211 2223334678999999999999999998854 8999998721        1    


Q ss_pred             ccCCCcceEEEEcccccCCCCC--CCCCcceEeee
Q 035595          116 YNNGHENFSFLVDGEYYSNCPA--VSGSQNYVILA  148 (178)
Q Consensus       116 ~~~g~~N~~F~~~~~~~s~~p~--~~~s~~~vil~  148 (178)
                      ...+..++.|..+... .++..  ..++.|+|+..
T Consensus       104 ~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~V~~~  137 (293)
T 3thr_A          104 KEPAFDKWVIEEANWL-TLDKDVPAGDGFDAVICL  137 (293)
T ss_dssp             TSHHHHTCEEEECCGG-GHHHHSCCTTCEEEEEEC
T ss_pred             cccccceeeEeecChh-hCccccccCCCeEEEEEc
Confidence            1123456788776653 22211  25789999875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.27  E-value=1.3e-06  Score=70.28  Aligned_cols=69  Identities=10%  Similarity=0.004  Sum_probs=50.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+......++++|++.        +....|. .++.|..+... .+| --.++.|+|+..+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~  158 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIP-CEDNSYDFIWSQD  158 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCS-SCTTCEEEEEEES
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc-cCC-CCCCCEeEEEecc
Confidence            56789999999999999999987555899999872        2233454 46899887664 333 1157889998765

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.27  E-value=2.1e-07  Score=70.47  Aligned_cols=62  Identities=8%  Similarity=-0.104  Sum_probs=44.6

Q ss_pred             eeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           83 LDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      +|||+|||+|..+..++... ..++++|++.        +....+. ++.|..+... .++ --.++.|+|+..
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~-~~~-~~~~~fD~v~~~  101 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLA-DFD-IVADAWEGIVSI  101 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTT-TBS-CCTTTCSEEEEE
T ss_pred             CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChh-hcC-CCcCCccEEEEE
Confidence            99999999999999998874 4899999872        2222244 7888876654 222 115788999874

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.27  E-value=6.1e-07  Score=68.03  Aligned_cols=62  Identities=10%  Similarity=0.065  Sum_probs=48.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..+..|+...  .++|+|++....+. ..++.|.++.....++   .++.|+|+.
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~-~~~~~~~~~d~~~~~~---~~~fD~i~~   84 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES-HRGGNLVRADLLCSIN---QESVDVVVF   84 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT-CSSSCEEECSTTTTBC---GGGCSEEEE
T ss_pred             CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc-ccCCeEEECChhhhcc---cCCCCEEEE
Confidence            45699999999999999999877  89999999665544 5678998877653222   378888876

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.27  E-value=9.1e-07  Score=70.40  Aligned_cols=68  Identities=18%  Similarity=0.128  Sum_probs=50.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc--------ccC--------CCcceEEEEcccccCCCCCC-CCC
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY--------YNN--------GHENFSFLVDGEYYSNCPAV-SGS  141 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~--------~~~--------g~~N~~F~~~~~~~s~~p~~-~~s  141 (178)
                      +..+|||||||+|..++.++... ...++++|++...        ...        |..|+.|..++....++..+ .++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            45789999999999999999875 3479999987322        111        77899999987753354445 567


Q ss_pred             cceEee
Q 035595          142 QNYVIL  147 (178)
Q Consensus       142 ~~~vil  147 (178)
                      .|.|++
T Consensus       129 ~d~v~~  134 (246)
T 2vdv_E          129 LSKMFF  134 (246)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence            777763

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.25  E-value=1.7e-06  Score=66.08  Aligned_cols=70  Identities=10%  Similarity=0.013  Sum_probs=51.0

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ..+..+|||+|||+|..++.++... ..+++++|++        ++....|..+++|..+.....+ +.+ ++.|+|++.
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~-~~~D~i~~~  115 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL-DDL-PDPDRVFIG  115 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC-TTS-CCCSEEEES
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh-hcC-CCCCEEEEC
Confidence            3467899999999999999999875 3589999987        2333456778999987664222 222 568888775


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      .
T Consensus       116 ~  116 (204)
T 3e05_A          116 G  116 (204)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.25  E-value=6.6e-07  Score=65.46  Aligned_cols=68  Identities=7%  Similarity=-0.058  Sum_probs=50.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      .+..+|||+|||+|..+..++.. ..+++++|.+        ++....|..++.|..+.....++   .++.|+|++.+.
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~i~~~~~  109 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLD---KLEFNKAFIGGT  109 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGG---GCCCSEEEECSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccccc---CCCCcEEEECCc
Confidence            35679999999999999999984 3589999977        33344566789998876643222   267898887654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.24  E-value=1.7e-06  Score=70.06  Aligned_cols=68  Identities=10%  Similarity=-0.051  Sum_probs=51.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||||||+|..+..|+...  ..+++++|++..        ....+. |+.|.++... .++.  +++.|+|++.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~-~~~~--~~~fD~v~~~   96 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDAT-EIEL--NDKYDIAICH   96 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTT-TCCC--SSCEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchh-hcCc--CCCeeEEEEC
Confidence            467899999999999999999863  248999998722        223333 8999998776 3443  6799999987


Q ss_pred             eh
Q 035595          149 NL  150 (178)
Q Consensus       149 nl  150 (178)
                      ++
T Consensus        97 ~~   98 (284)
T 3gu3_A           97 AF   98 (284)
T ss_dssp             SC
T ss_pred             Ch
Confidence            64

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.24  E-value=3.3e-06  Score=65.65  Aligned_cols=69  Identities=7%  Similarity=-0.027  Sum_probs=50.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+......++++|++...      ......++.|..+... .+ |--.++.|+|+..+
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~~~  128 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDIL-TK-EFPENNFDLIYSRD  128 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT-TC-CCCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc-cC-CCCCCcEEEEeHHH
Confidence            4677999999999999999998754589999987211      1111168999987764 23 22268899999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.24  E-value=1.5e-06  Score=69.65  Aligned_cols=66  Identities=8%  Similarity=-0.045  Sum_probs=51.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..|+... ..++++|++        +++...|. ++.|..+... .++.  .++.|+||..+
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~-~~~~--~~~fD~i~~~~  192 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLG-YDVTSWDHNENSIAFLNETKEKENL-NISTALYDIN-AANI--QENYDFIVSTV  192 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGG-GCCC--CSCEEEEEECS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccc-cccc--cCCccEEEEcc
Confidence            367899999999999999999885 489999987        23344566 8999987765 3443  78899998865

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.23  E-value=2.8e-06  Score=69.74  Aligned_cols=33  Identities=9%  Similarity=0.013  Sum_probs=28.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      +..+|||||||+|..++.|+... ..+++++|++
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis   79 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDID   79 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESC
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999874 3589999987

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.23  E-value=2.5e-06  Score=66.44  Aligned_cols=67  Identities=12%  Similarity=0.047  Sum_probs=50.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccc-------cccCCCcceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE-------YYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k-------~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..|+... ..++++|.+..       ....+..|+.|..+... .+|  + .++.|+|+..+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~--~~~~~fD~v~~~~  112 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADAR-AIP--LPDESVHGVIVVH  112 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTT-SCC--SCTTCEEEEEEES
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccc-cCC--CCCCCeeEEEECC
Confidence            467899999999999999999875 48999998721       11345678999987764 343  3 57899998865

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.23  E-value=2.3e-06  Score=70.16  Aligned_cols=69  Identities=6%  Similarity=-0.097  Sum_probs=51.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+......++++|++        +++...|.. |+.|..+... .+| --.++.|+|+..+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~~fD~V~~~~  193 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML-DTP-FDKGAVTASWNNE  193 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC-CCTTCEEEEEEES
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-cCC-CCCCCEeEEEECC
Confidence            4578999999999999999998744589999977        333445655 7999997765 333 1257899998754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.22  E-value=1.6e-06  Score=67.72  Aligned_cols=69  Identities=9%  Similarity=-0.045  Sum_probs=51.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||||||+|..+..|+... .+++++|++...   +.....++.|..+.....+|-.+.++.|+|+..
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence            356899999999999999999885 489999988321   111145799999877435664457899998864

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.22  E-value=2.8e-06  Score=67.95  Aligned_cols=66  Identities=8%  Similarity=-0.005  Sum_probs=49.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++.....+++++|++        ++....|. .++.|...... .+|    ++.|+|+..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~----~~fD~v~~~~  137 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFD----EPVDRIVSIG  137 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCC----CCCSEEEEES
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCC----CCeeEEEEeC
Confidence            4567999999999999999996554589999987        23333344 47899887654 333    8899998764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.22  E-value=1.6e-06  Score=67.87  Aligned_cols=68  Identities=9%  Similarity=0.050  Sum_probs=49.3

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..+..|+......++++|++        ++....+..++.|...... .++. -.++.|+|++.+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ-DFTP-EPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGG-GCCC-CSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChh-hcCC-CCCCEEEEEEcc
Confidence            578999999999999999988754489999977        2223333457888887654 3332 146789998775

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.22  E-value=2.2e-06  Score=67.95  Aligned_cols=69  Identities=16%  Similarity=0.084  Sum_probs=52.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++... ...++++|++        ++....|..|+.|..+... .++. -.++.|+|++.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~fD~v~~~~  113 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIF-SLPF-EDSSFDHIFVCF  113 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GCCS-CTTCEEEEEEES
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccc-cCCC-CCCCeeEEEEec
Confidence            467899999999999999999874 3589999987        3334457778999997765 3331 157899998765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.21  E-value=3.1e-06  Score=70.97  Aligned_cols=69  Identities=9%  Similarity=-0.102  Sum_probs=44.6

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ...+..+|||||||+|..+++|+.... +++|+|.+.        +....   .+..........++..+.++.|+|+..
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~---~v~~~~~~~~~~~~~~~~~~fD~Vv~~  117 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR---CVTIDLLDITAEIPKELAGHFDFVLND  117 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS---CCEEEECCTTSCCCGGGTTCCSEEEEE
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc---cceeeeeecccccccccCCCccEEEEh
Confidence            335678999999999999999998764 899999872        22111   222222111111233457889998875


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      +
T Consensus       118 ~  118 (261)
T 3iv6_A          118 R  118 (261)
T ss_dssp             S
T ss_pred             h
Confidence            4

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.21  E-value=1.9e-06  Score=71.04  Aligned_cols=66  Identities=12%  Similarity=0.088  Sum_probs=49.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--ccCCCcceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--YNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      ...+|||||||+|..+..|+.... +++|+|.+...  ......|+.|.++... .+|  + .++.|+|+...
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~~~v~~~~~~~e-~~~--~~~~sfD~v~~~~  107 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRHPRVTYAVAPAE-DTG--LPPASVDVAIAAQ  107 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCCTTEEEEECCTT-CCC--CCSSCEEEEEECS
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhcCCceeehhhhh-hhc--ccCCcccEEEEee
Confidence            457899999999999999998875 89999988322  1123468999997764 332  3 68999998765

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.21  E-value=1.3e-06  Score=64.16  Aligned_cols=69  Identities=10%  Similarity=0.070  Sum_probs=48.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..+..++... ..+++++|++        ++....|.. ++ +..+.....++ ...++.|+|++.
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~-~~~~~~D~i~~~  101 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD-DVPDNPDVIFIG  101 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG-GCCSCCSEEEEC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh-ccCCCCCEEEEC
Confidence            456799999999999999999874 4589999977        233345666 78 66644422222 233789999876


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      +
T Consensus       102 ~  102 (178)
T 3hm2_A          102 G  102 (178)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.20  E-value=1.2e-06  Score=72.70  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=54.9

Q ss_pred             Cccccc---c---cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------ccCCCcceEEEEcccccCC
Q 035595           67 KFFKFT---A---ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YNNGHENFSFLVDGEYYSN  134 (178)
Q Consensus        67 ~FFKdR---P---EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~  134 (178)
                      +|-.|.   .   +.....+..+|||||||+|..+..|+.... +++|+|++.+.      ......|+.+..++...--
T Consensus        10 nFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~   88 (255)
T 3tqs_A           10 HFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFD   88 (255)
T ss_dssp             CEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCC
T ss_pred             ccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCC
Confidence            566665   1   222334678999999999999999999874 89999987221      1112468999998775211


Q ss_pred             CCCCCCCcceEeeeehh
Q 035595          135 CPAVSGSQNYVILANLK  151 (178)
Q Consensus       135 ~p~~~~s~~~vil~nl~  151 (178)
                      .+.+.....+.|+.||=
T Consensus        89 ~~~~~~~~~~~vv~NlP  105 (255)
T 3tqs_A           89 FSSVKTDKPLRVVGNLP  105 (255)
T ss_dssp             GGGSCCSSCEEEEEECC
T ss_pred             HHHhccCCCeEEEecCC
Confidence            23332223455888873

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.20  E-value=2.5e-06  Score=65.87  Aligned_cols=67  Identities=13%  Similarity=0.086  Sum_probs=48.5

Q ss_pred             CCCceeEeeccC-CchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFG-NGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG-~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+||| +|..++.++.....+++++|++        +++...|. ++.|..+... .+.+-.+++.|+|+.
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~-~~~~~~~~~fD~I~~  129 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGG-IIKGVVEGTFDVIFS  129 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSC-SSTTTCCSCEEEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCch-hhhhcccCceeEEEE
Confidence            367899999999 9999999998744589999987        23344566 8899987742 111111478898773

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.20  E-value=9.4e-07  Score=68.69  Aligned_cols=67  Identities=15%  Similarity=0.019  Sum_probs=49.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC--cceEEEEcccccCCCCCC-CCC-cceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH--ENFSFLVDGEYYSNCPAV-SGS-QNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~--~N~~F~~~~~~~s~~p~~-~~s-~~~vil  147 (178)
                      +..+|||+|||+|..++.++......++++|++        +++...|.  .+++|..+... ...+.+ .++ .|+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL-DFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH-HHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHH-HHHHhhccCCCCCEEEE
Confidence            457899999999999999777543479999977        33445566  68999987764 233333 566 788875

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.20  E-value=2.1e-06  Score=67.18  Aligned_cols=67  Identities=9%  Similarity=0.022  Sum_probs=49.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..++.++.. ..+++++|++        +++...|.. |+.|..+.....+ +.+ ++.|+|++-
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~-~~~D~v~~~  129 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL-ADL-PLPEAVFIG  129 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG-TTS-CCCSEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc-ccC-CCCCEEEEC
Confidence            46789999999999999999988 4589999977        334455777 8999987764222 222 457888764

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.20  E-value=2.2e-06  Score=65.27  Aligned_cols=66  Identities=15%  Similarity=0.113  Sum_probs=49.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||+|||+|..+..++......++++|++        ++....+..|+.|..+... .   .++++.|+|+...
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~---~~~~~fD~i~~~~  133 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLL-A---DVDGKFDLIVANI  133 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTT-T---TCCSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccc-c---cCCCCceEEEECC
Confidence            567999999999999999887543489999977        3334457777899887764 2   2358899988754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.19  E-value=2.7e-06  Score=67.16  Aligned_cols=69  Identities=9%  Similarity=0.019  Sum_probs=50.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++.....+++++|++        ++....|.. ++.|..+... .+| --.++.|+|+..+
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~  137 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM-DLP-FEDASFDAVWALE  137 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCC-SCTTCEEEEEEES
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccc-cCC-CCCCCccEEEEec
Confidence            4668999999999999999998655689999987        233334544 6899887664 333 1147889998764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.19  E-value=2.8e-06  Score=68.79  Aligned_cols=68  Identities=19%  Similarity=0.147  Sum_probs=47.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------ccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      .+..+|||+|||+|..+..|+... .+++|+|++...      ......|+.|..++.. .++.  +...+++|+.|+
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~-~~~~--~~~~~~~vv~nl  102 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDIL-QFKF--PKNQSYKIFGNI  102 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGG-GCCC--CSSCCCEEEEEC
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHH-hCCc--ccCCCeEEEEeC
Confidence            467899999999999999999887 489999987221      1112358899887764 3321  222345778886

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.18  E-value=1.2e-06  Score=69.24  Aligned_cols=93  Identities=10%  Similarity=0.010  Sum_probs=60.8

Q ss_pred             cchHHHHHHHhhcCCCCccccc-c---ccc-c-cCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCc
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFT-A---ELS-N-CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHE  121 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdR-P---EL~-~-~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~  121 (178)
                      .-++.||.+|....  ..|... .   ++. . ..+..+|||||||+|..+..|+.... .++++|++...   +.....
T Consensus        17 ~~a~~yd~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~   93 (263)
T 3pfg_A           17 EIAELYDLVHQGKG--KDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP   93 (263)
T ss_dssp             HHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT
T ss_pred             hHHHHHHHHhhcCC--CCHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC
Confidence            44677888885321  233322 1   111 1 13458999999999999999998764 79999987321   222233


Q ss_pred             ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595          122 NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus       122 N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ++.|..+... .++.  +++.|+|++..
T Consensus        94 ~~~~~~~d~~-~~~~--~~~fD~v~~~~  118 (263)
T 3pfg_A           94 DAVLHHGDMR-DFSL--GRRFSAVTCMF  118 (263)
T ss_dssp             TSEEEECCTT-TCCC--SCCEEEEEECT
T ss_pred             CCEEEECChH-HCCc--cCCcCEEEEcC
Confidence            7899887665 3443  78999998763

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.17  E-value=2.8e-06  Score=69.93  Aligned_cols=66  Identities=11%  Similarity=-0.031  Sum_probs=47.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh---hhheeeeecc--------cccccCC-CcceEEEEcccccCCCCCCCCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI---KMKILASLVD--------GEYYNNG-HENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~---~~~i~AtD~s--------~k~~~~g-~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      .+..+|||||||+|..++.|+...   ..+++|+|.+        ++....+ ..+++|.++... .+|   .++.|+|+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~-~~~---~~~~d~v~  144 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR-DIA---IENASMVV  144 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTT-TCC---CCSEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccc-ccc---ccccccce
Confidence            467899999999999999999864   3478999987        2333333 347999987654 333   24578877


Q ss_pred             ee
Q 035595          147 LA  148 (178)
Q Consensus       147 l~  148 (178)
                      +.
T Consensus       145 ~~  146 (261)
T 4gek_A          145 LN  146 (261)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.17  E-value=3e-06  Score=65.07  Aligned_cols=69  Identities=9%  Similarity=-0.080  Sum_probs=49.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCc-----ceEEEEcccccCCCCCCCCCcce
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHE-----NFSFLVDGEYYSNCPAVSGSQNY  144 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~-----N~~F~~~~~~~s~~p~~~~s~~~  144 (178)
                      .+..+|||||||+|..+..|+.... ..++++|++        ++....+..     ++.|..+...  ..+.-.++.|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~  105 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT--YQDKRFHGYDA  105 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT--SCCGGGCSCSE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc--cccccCCCcCE
Confidence            3567999999999999999988542 489999987        233334444     7899887653  22222478999


Q ss_pred             Eeeee
Q 035595          145 VILAN  149 (178)
Q Consensus       145 vil~n  149 (178)
                      |++.+
T Consensus       106 v~~~~  110 (217)
T 3jwh_A          106 ATVIE  110 (217)
T ss_dssp             EEEES
T ss_pred             EeeHH
Confidence            99765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.17  E-value=1.9e-06  Score=65.77  Aligned_cols=67  Identities=6%  Similarity=0.017  Sum_probs=48.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+.... .++++|++...    ......++.|..+... .++  .+++.|+|++.+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~-~~~--~~~~fD~v~~~~  111 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFE-DAQ--LPRRYDNIVLTH  111 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGG-GCC--CSSCEEEEEEES
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhCCeEEEEccHH-HcC--cCCcccEEEEhh
Confidence            3567899999999999999998764 89999988321    1111118899987764 332  267899999865

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.17  E-value=3.8e-06  Score=65.76  Aligned_cols=69  Identities=9%  Similarity=-0.102  Sum_probs=50.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-----ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-----YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-----~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++......++++|++...     ......++.|..+... .++ --.++.|+|++.+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~  116 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIE-DIA-IEPDAYNVVLSSL  116 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGG-GCC-CCTTCEEEEEEES
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchh-hCC-CCCCCeEEEEEch
Confidence            3678999999999999999998753389999987211     1111467899987764 333 2268899999876

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.16  E-value=1.8e-06  Score=70.01  Aligned_cols=64  Identities=9%  Similarity=0.008  Sum_probs=49.0

Q ss_pred             CceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC---cceEEEEcccccCCCCCCCCCcceEeee
Q 035595           81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH---ENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~---~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ..+|||||||+|..+..|+... ..++++|++        ++....+.   .++.|.++... .++.  +++.|+||+.
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~~--~~~fD~v~~~  157 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFAL--DKRFGTVVIS  157 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCCC--SCCEEEEEEC
T ss_pred             CCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCCc--CCCcCEEEEC
Confidence            4599999999999999999885 589999987        33333333   57999998775 4443  7899988864

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.16  E-value=1.1e-06  Score=72.37  Aligned_cols=84  Identities=15%  Similarity=0.096  Sum_probs=55.2

Q ss_pred             CCccccc---c---cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----ccCCCcceEEEEcccccCCC
Q 035595           66 GKFFKFT---A---ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----YNNGHENFSFLVDGEYYSNC  135 (178)
Q Consensus        66 ~~FFKdR---P---EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~~~g~~N~~F~~~~~~~s~~  135 (178)
                      .+|..|+   .   +.....+..+|||||||+|.....|+.....+++|+|++.+.    ...+..|++|..++...--.
T Consensus        11 Qnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~   90 (249)
T 3ftd_A           11 QHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPF   90 (249)
T ss_dssp             SSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCG
T ss_pred             ccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCCh
Confidence            3576665   1   222334678999999999999999998732489999988221    11144678998877752112


Q ss_pred             CCCCCCcceEeeeehh
Q 035595          136 PAVSGSQNYVILANLK  151 (178)
Q Consensus       136 p~~~~s~~~vil~nl~  151 (178)
                      +.+.+  +++|+.||=
T Consensus        91 ~~~~~--~~~vv~NlP  104 (249)
T 3ftd_A           91 CSLGK--ELKVVGNLP  104 (249)
T ss_dssp             GGSCS--SEEEEEECC
T ss_pred             hHccC--CcEEEEECc
Confidence            33333  678888873

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.16  E-value=6.2e-07  Score=69.45  Aligned_cols=93  Identities=8%  Similarity=0.066  Sum_probs=57.6

Q ss_pred             cccchHHHHHHHhhcCCCCcccccccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCC-cceEEEE
Q 035595           49 AEKDSDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGH-ENFSFLV  127 (178)
Q Consensus        49 ~~~~~~~Wd~Fy~rh~~~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~-~N~~F~~  127 (178)
                      +....+.||.+|.++. ..+-.....|....+..+|||||||+|..+..++..     +++|.+....+..- .++.|..
T Consensus        17 ~~~~~~~y~~~~~~~~-~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~~~~~~~   90 (219)
T 1vlm_A           17 FERFVNEYERWFLVHR-FAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKRGVFVLK   90 (219)
T ss_dssp             HHHTHHHHHHHHHHTH-HHHHHHHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHTTCEEEE
T ss_pred             cchhHHHHHHHHHhcc-hhHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhcCCEEEE
Confidence            3456789999997753 122111122222234789999999999999988654     88898732211000 1678887


Q ss_pred             cccccCCCCCCCCCcceEeeee
Q 035595          128 DGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus       128 ~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .... .++ --.++.|+|++.+
T Consensus        91 ~d~~-~~~-~~~~~fD~v~~~~  110 (219)
T 1vlm_A           91 GTAE-NLP-LKDESFDFALMVT  110 (219)
T ss_dssp             CBTT-BCC-SCTTCEEEEEEES
T ss_pred             cccc-cCC-CCCCCeeEEEEcc
Confidence            6654 333 1256889999876

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.16  E-value=3.8e-06  Score=66.50  Aligned_cols=70  Identities=7%  Similarity=-0.045  Sum_probs=49.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++......++++|++        ++....+. .++.|..+... .++-..+++.|+|++.+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCCCCSSCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcc-ccccCCCCCcCEEEECc
Confidence            4568999999999999999887643489999987        22223333 46888887654 23222367899998764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.15  E-value=8.8e-07  Score=68.89  Aligned_cols=67  Identities=12%  Similarity=-0.064  Sum_probs=48.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++.....+++++|++        +++...|..|++|.++....-+ +...++.|+|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~-~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL-AQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH-SSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH-hhcCCCCCEEEE
Confidence            457999999999999999877543489999977        3344456678999987753212 223467887775

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.15  E-value=4e-06  Score=63.78  Aligned_cols=62  Identities=16%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..+..++......++++|++        ++....|. ++.|..+... .+    +++.|+||+
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~-~~----~~~~D~v~~  118 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVS-EF----NSRVDIVIM  118 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGG-GC----CCCCSEEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchH-Hc----CCCCCEEEE
Confidence            567999999999999999988743379999987        23334455 7899887765 23    346777664

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.15  E-value=1.9e-06  Score=68.97  Aligned_cols=67  Identities=10%  Similarity=0.041  Sum_probs=49.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..++++|.+...   +.....++.|..+... .+|.  +++.|+|+..+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~--~~~fD~v~~~~  125 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPHLHFDVADAR-NFRV--DKPLDAVFSNA  125 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSCEEECCTT-TCCC--SSCEEEEEEES
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhCCCCEEEECChh-hCCc--CCCcCEEEEcc
Confidence            466899999999999999999844 489999987321   1112257889887765 4553  68899998765

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.15  E-value=3e-06  Score=65.04  Aligned_cols=69  Identities=10%  Similarity=-0.031  Sum_probs=48.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCc-----ceEEEEcccccCCCCCCCCCcce
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHE-----NFSFLVDGEYYSNCPAVSGSQNY  144 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~-----N~~F~~~~~~~s~~p~~~~s~~~  144 (178)
                      .+..+|||||||+|..+..|+.... ..++++|++        ++....+..     +++|..+...  ..+.-.++.|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~  105 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV--YRDKRFSGYDA  105 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS--SCCGGGTTCSE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc--ccccccCCCCE
Confidence            4567999999999999999987542 489999987        222333333     7899887653  12222578999


Q ss_pred             Eeeee
Q 035595          145 VILAN  149 (178)
Q Consensus       145 vil~n  149 (178)
                      |++.+
T Consensus       106 V~~~~  110 (219)
T 3jwg_A          106 ATVIE  110 (219)
T ss_dssp             EEEES
T ss_pred             EEEHH
Confidence            98654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.14  E-value=1.2e-06  Score=68.38  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      +..+|||+|||+|..++.++... .+++++|++        +++...|+ .++.|..+... .++  ..++.|+|++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~--~~~~~D~v~~~  151 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFL-LLA--SFLKADVVFLS  151 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH-HHG--GGCCCSEEEEC
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChH-Hhc--ccCCCCEEEEC
Confidence            67899999999999999999876 589999987        33445566 58999997764 222  24688888753

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.13  E-value=1.6e-06  Score=68.64  Aligned_cols=70  Identities=4%  Similarity=-0.031  Sum_probs=51.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||||||+|..++.|+... ..+++++|++        ++....|+. |+.|..+.....++..+.++.|+|++-
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            367899999999999999999842 4589999977        333445664 799999877522221446889998864

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.13  E-value=2.3e-06  Score=69.97  Aligned_cols=68  Identities=6%  Similarity=-0.028  Sum_probs=50.5

Q ss_pred             CCCceeEeeccCCchhHHHhH--Hhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFS--VVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll--~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||||||+|..+..|+  ......++++|++        ++....|..+ ++|..+... .++.  +++.|+|++
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~--~~~fD~v~~  193 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW-KLDT--REGYDLLTS  193 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG-GCCC--CSCEEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh-cCCc--cCCeEEEEE
Confidence            456899999999999999995  3334589999987        3344556555 999998775 3443  388999998


Q ss_pred             ee
Q 035595          148 AN  149 (178)
Q Consensus       148 ~n  149 (178)
                      .+
T Consensus       194 ~~  195 (305)
T 3ocj_A          194 NG  195 (305)
T ss_dssp             CS
T ss_pred             CC
Confidence            55

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.12  E-value=2.7e-06  Score=64.88  Aligned_cols=67  Identities=12%  Similarity=0.011  Sum_probs=49.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..|+... ..++++|++...   +.... .++.|..+... .++..  ++.|+|++.+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~-~~~~~--~~fD~v~~~~  114 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKEFSITEGDFL-SFEVP--TSIDTIVSTY  114 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSCTTCCEESCCSS-SCCCC--SCCSEEEEES
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCCCceEEEeCChh-hcCCC--CCeEEEEECc
Confidence            367899999999999999999875 489999987321   11111 47888887665 34433  8999998875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.12  E-value=2.6e-06  Score=65.20  Aligned_cols=69  Identities=9%  Similarity=-0.055  Sum_probs=50.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..+..++....  .+++++|++        ++....|..|+.|.........+  -.++.|+|++.
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~v~~~  153 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--PLAPYDRIYTT  153 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--GGCCEEEEEES
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--CCCCeeEEEEC
Confidence            4678999999999999999998762  489999977        23334567789998876532222  14578888865


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      +
T Consensus       154 ~  154 (215)
T 2yxe_A          154 A  154 (215)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.12  E-value=3.3e-06  Score=67.64  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=52.3

Q ss_pred             Cccccc---c---cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccC------CCcceEEEEcccccCC
Q 035595           67 KFFKFT---A---ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNN------GHENFSFLVDGEYYSN  134 (178)
Q Consensus        67 ~FFKdR---P---EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~------g~~N~~F~~~~~~~s~  134 (178)
                      +|+.++   .   +.....+..+|||+|||+|..+..|+... .+++|+|++......      +..|++|..++.. .+
T Consensus        10 ~fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~-~~   87 (245)
T 1yub_A           10 NFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDIL-QF   87 (245)
T ss_dssp             CBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCT-TT
T ss_pred             CCCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChh-hc
Confidence            577766   1   22233467899999999999999999886 489999988433221      3356888776654 33


Q ss_pred             CCCCCCCcceEeeeeh
Q 035595          135 CPAVSGSQNYVILANL  150 (178)
Q Consensus       135 ~p~~~~s~~~vil~nl  150 (178)
                      +  ++....++|+.|+
T Consensus        88 ~--~~~~~~f~vv~n~  101 (245)
T 1yub_A           88 Q--FPNKQRYKIVGNI  101 (245)
T ss_dssp             T--CCCSSEEEEEEEC
T ss_pred             C--cccCCCcEEEEeC
Confidence            3  2211234777785

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.11  E-value=2e-06  Score=70.05  Aligned_cols=73  Identities=7%  Similarity=-0.080  Sum_probs=54.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCC--CCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCP--AVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p--~~~~s~~~vil  147 (178)
                      .+..+|||||||+|-.+++|+... ..+++++|.+        +.+...|..|++|..+... .+++  ...++.|+|+.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~-~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAE-VLAREAGHREAYARAVA  157 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHH-HHTTSTTTTTCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHH-HhhcccccCCCceEEEE
Confidence            356799999999999999999863 4589999977        3334558888999987764 3333  34688999998


Q ss_pred             eehhh
Q 035595          148 ANLKS  152 (178)
Q Consensus       148 ~nl~~  152 (178)
                      -.++.
T Consensus       158 ~a~~~  162 (249)
T 3g89_A          158 RAVAP  162 (249)
T ss_dssp             ESSCC
T ss_pred             CCcCC
Confidence            65543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.11  E-value=2.7e-06  Score=69.88  Aligned_cols=66  Identities=18%  Similarity=0.063  Sum_probs=50.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..+++++.....+++|+|++        +.+..+|..| +.|..+... .+++  .++.|+||+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~-~~~~--~~~fD~Vi~  198 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR-DFPG--ENIADRILM  198 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT-TCCC--CSCEEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHH-Hhcc--cCCccEEEE
Confidence            3578999999999999999998764369999987        3334457776 889887775 3333  678898877

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.11  E-value=3.6e-06  Score=65.05  Aligned_cols=66  Identities=11%  Similarity=0.073  Sum_probs=48.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..|+... .+++++|++        ++....|  |+.|........++  ..++.|+||+.+
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--~~~~fD~v~~~~  142 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--EEKPYDRVVVWA  142 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--GGCCEEEEEESS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--cCCCccEEEECC
Confidence            466799999999999999999877 489999977        2222333  88998876642222  246789888765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.10  E-value=8.7e-07  Score=65.90  Aligned_cols=67  Identities=13%  Similarity=0.047  Sum_probs=47.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++.....+++++|++        ++....|.. ++.|..+.... ..+..+++.|+|++
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~fD~i~~  106 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER-AIDCLTGRFDLVFL  106 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH-HHHHBCSCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH-hHHhhcCCCCEEEE
Confidence            467899999999999999998743489999987        233344553 68888876642 11223456888776

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.10  E-value=5.3e-06  Score=63.19  Aligned_cols=66  Identities=12%  Similarity=0.071  Sum_probs=48.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCC-CCCcceEeeeeh
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILANL  150 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~nl  150 (178)
                      +..+|||+|||+|..+..++.... +++++|++.        +....+ .++.|...... .++  + +++.|+|++.+.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~-~~~--~~~~~~D~v~~~~~  112 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDAR-KLS--FEDKTFDYVIFIDS  112 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTT-SCC--SCTTCEEEEEEESC
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchh-cCC--CCCCcEEEEEEcCc
Confidence            467999999999999998888765 899999872        222223 67899887654 232  3 568999987654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.10  E-value=6.7e-06  Score=66.99  Aligned_cols=66  Identities=6%  Similarity=0.011  Sum_probs=49.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++.....+++++|++        ++....|.. ++.|...... .+    +++.|+|+..+
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~----~~~fD~v~~~~  163 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE-DF----AEPVDRIVSIE  163 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG-GC----CCCCSEEEEES
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH-HC----CCCcCEEEEeC
Confidence            4667999999999999999998754589999987        233344554 5889887654 33    37899998764

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.10  E-value=9.2e-06  Score=63.28  Aligned_cols=52  Identities=15%  Similarity=0.084  Sum_probs=39.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-----ccCCCcceEEEEcccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-----YNNGHENFSFLVDGEY  131 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-----~~~g~~N~~F~~~~~~  131 (178)
                      .+..+|||||||+|..+..|+.... +++++|++...     ......|+.|.++...
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~  111 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISYRLLDGL  111 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCTTEEEEECCTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcccCceEEECccc
Confidence            4567999999999999999998875 89999987211     1113347899886653

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.09  E-value=5.4e-06  Score=64.53  Aligned_cols=68  Identities=9%  Similarity=-0.085  Sum_probs=50.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++... ...++++|++...   +.....++.|..+... .++  .+++.|+|+..+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~~~--~~~~fD~v~~~~  103 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLA-TWK--PAQKADLLYANA  103 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTT-TCC--CSSCEEEEEEES
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChh-hcC--ccCCcCEEEEeC
Confidence            456799999999999999999873 3589999988321   1111457899887765 444  367899998865

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.09  E-value=6.6e-06  Score=63.41  Aligned_cols=68  Identities=13%  Similarity=-0.014  Sum_probs=49.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccc----cc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE----YY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k----~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..++++|++..    +. .....++.|...... .++ --.++.|+|++.+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~  124 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLS-SLP-FENEQFEAIMAIN  124 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTT-BCS-SCTTCEEEEEEES
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhcccCCceEEEcchh-cCC-CCCCCccEEEEcC
Confidence            356799999999999999999885 48999998721    11 113467899887765 333 1268899999765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.08  E-value=3.3e-06  Score=64.71  Aligned_cols=65  Identities=8%  Similarity=-0.013  Sum_probs=48.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||+|||+|..+..|+... .+++++|.+        ++....+. ++.|...... .++.  +++.|+||+.+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~-~~~~--~~~fD~v~~~~  109 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDIS-NLNI--NRKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGG-GCCC--SCCEEEEEECT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccc-cCCc--cCCceEEEEcC
Confidence            56799999999999999999875 479999987        22223333 7888887654 3432  37889998865

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.08  E-value=5.7e-06  Score=68.57  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=47.3

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCC-cceEEEEcccccCCCCCCCCCcceEeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ..+..+|||||||+|.....|+.... +++|+|++.        +....|. .++.|..++.. ..+  ++ +.|+|| .
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~-~~~--~~-~fD~vv-~   99 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL-KTD--LP-FFDTCV-A   99 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT-TSC--CC-CCSEEE-E
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEccee-ccc--ch-hhcEEE-E
Confidence            34678999999999999999999865 899999872        2233344 57999987764 222  11 567554 4


Q ss_pred             eh
Q 035595          149 NL  150 (178)
Q Consensus       149 nl  150 (178)
                      |+
T Consensus       100 nl  101 (285)
T 1zq9_A          100 NL  101 (285)
T ss_dssp             EC
T ss_pred             ec
Confidence            74

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.08  E-value=6.1e-06  Score=64.06  Aligned_cols=70  Identities=7%  Similarity=-0.003  Sum_probs=49.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------ccCCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      .+..+|||||||+|..+..|+......++++|++...      ......++.|...... .++ --.++.|+|+..+.
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~~  167 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TAT-LPPNTYDLIVIQWT  167 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GCC-CCSSCEEEEEEESC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHH-HCC-CCCCCeEEEEEcch
Confidence            3578999999999999999998754469999977211      1111257899887654 332 12568999998653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.08  E-value=4.1e-06  Score=69.63  Aligned_cols=70  Identities=16%  Similarity=0.090  Sum_probs=51.2

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..+..+|||||||+|..++.++....  .+++++|++        ++....|..|+.|.........+  -.++.|+|++
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--~~~~fD~Iv~  150 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--EFSPYDVIFV  150 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--GGCCEEEEEE
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--cCCCeEEEEE
Confidence            34678999999999999999998753  249999977        33445677889998876642222  2367888887


Q ss_pred             ee
Q 035595          148 AN  149 (178)
Q Consensus       148 ~n  149 (178)
                      .+
T Consensus       151 ~~  152 (317)
T 1dl5_A          151 TV  152 (317)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.07  E-value=6.4e-06  Score=65.04  Aligned_cols=71  Identities=10%  Similarity=0.090  Sum_probs=50.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh--hheeeeecccc--------------cccCCC-cceEEEEcccccCCCCCC-CC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVDGE--------------YYNNGH-ENFSFLVDGEYYSNCPAV-SG  140 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~k--------------~~~~g~-~N~~F~~~~~~~s~~p~~-~~  140 (178)
                      .+..+|||||||+|..+..++....  .+++++|.+..              ....+. .++.|............+ .+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  121 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ  121 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence            4668999999999999999998751  48999998754              233444 579998876110111112 57


Q ss_pred             CcceEeeee
Q 035595          141 SQNYVILAN  149 (178)
Q Consensus       141 s~~~vil~n  149 (178)
                      +.|+|+..+
T Consensus       122 ~fD~v~~~~  130 (275)
T 3bkx_A          122 HFDRVVLAH  130 (275)
T ss_dssp             CCSEEEEES
T ss_pred             CEEEEEEcc
Confidence            899999765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.07  E-value=6.8e-06  Score=68.32  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=50.5

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc------cccCCCcceEEEEcccc-cCCCCCCCCCcceEee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE------YYNNGHENFSFLVDGEY-YSNCPAVSGSQNYVIL  147 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k------~~~~g~~N~~F~~~~~~-~s~~p~~~~s~~~vil  147 (178)
                      -.|.++|||+|||+|.++..|+..+  .-+++|+|++.+      .......|+.+...... ...++.+.+++|+|++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~  153 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYA  153 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEE
Confidence            3578999999999999999999876  457999998711      11223458888776552 2334666789998764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.06  E-value=2.7e-06  Score=68.16  Aligned_cols=67  Identities=15%  Similarity=0.023  Sum_probs=50.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCC-CCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++......++|+|++        +.....+.. ++.|..+... ..++.+ +++.|+||.
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~-~~~~~~~~~~fD~Ii~  125 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLK-KITDLIPKERADIVTC  125 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGG-GGGGTSCTTCEEEEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHH-HhhhhhccCCccEEEE
Confidence            678999999999999999998754489999987        233344555 5888887765 344445 678898876

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.06  E-value=8.4e-06  Score=64.40  Aligned_cols=68  Identities=10%  Similarity=0.021  Sum_probs=47.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCC----CCcceE
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVS----GSQNYV  145 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~----~s~~~v  145 (178)
                      +..+|||+|||+|..++.++... ..+++++|++        +++...|..+ +.|..+.....+...++    ++.|+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            45689999999999999998764 3589999987        3334456665 99998764311222232    578887


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      |.
T Consensus       145 ~~  146 (254)
T 2h00_A          145 MC  146 (254)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.06  E-value=2.7e-06  Score=71.13  Aligned_cols=67  Identities=15%  Similarity=0.196  Sum_probs=45.5

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ..+..+|||+|||+|..+..|+.... .++|+|++.        +....|..|+.|..+... .++.   ++.|+|| .|
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~-~~~~---~~~D~Vv-~n  113 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI-KTVF---PKFDVCT-AN  113 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC-SSCC---CCCSEEE-EE
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh-hCCc---ccCCEEE-Ec
Confidence            34678999999999999999998764 899999872        223356678999887664 2332   3667665 46


Q ss_pred             h
Q 035595          150 L  150 (178)
Q Consensus       150 l  150 (178)
                      +
T Consensus       114 ~  114 (299)
T 2h1r_A          114 I  114 (299)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.06  E-value=2.1e-06  Score=68.93  Aligned_cols=68  Identities=9%  Similarity=-0.011  Sum_probs=50.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCC--CCCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAV--SGSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~--~~s~~~v  145 (178)
                      .+..+|||||||+|..++.|+...  ..+++++|++        ++....|.. +++|..+.....+ +.+  .++.|+|
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l-~~~~~~~~fD~V  140 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL-ESLGECPAFDLI  140 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-HTCCSCCCCSEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH-HhcCCCCCeEEE
Confidence            467899999999999999999873  3589999987        333445665 7999997764222 233  3478988


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      ++
T Consensus       141 ~~  142 (248)
T 3tfw_A          141 FI  142 (248)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.05  E-value=4.6e-06  Score=67.61  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHh--hhhheeeeecccc--------ccc--CCCcceEEEEcccccCCC--C--CC-CCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVV--IKMKILASLVDGE--------YYN--NGHENFSFLVDGEYYSNC--P--AV-SGS  141 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~--~~~~i~AtD~s~k--------~~~--~g~~N~~F~~~~~~~s~~--p--~~-~~s  141 (178)
                      .+..+|||||||+|..+..|+..  ...+++++|++..        ...  .+..++.|.++... .++  .  .+ .++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD-DFKFLGADSVDKQK  113 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT-CCGGGCTTTTTSSC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH-hCCccccccccCCC
Confidence            36789999999999999999963  2458999998721        111  23678999997764 222  1  23 489


Q ss_pred             cceEeeee
Q 035595          142 QNYVILAN  149 (178)
Q Consensus       142 ~~~vil~n  149 (178)
                      .|+|+..+
T Consensus       114 fD~V~~~~  121 (299)
T 3g5t_A          114 IDMITAVE  121 (299)
T ss_dssp             EEEEEEES
T ss_pred             eeEEeHhh
Confidence            99999875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.05  E-value=3.2e-06  Score=73.13  Aligned_cols=72  Identities=13%  Similarity=-0.003  Sum_probs=52.9

Q ss_pred             ccccCCCceeEeeccCCch-hHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceE
Q 035595           75 LSNCHEAALDAKGNFGNGS-LIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        75 L~~~~~~~~vLEvGCG~Gn-ta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      |....+..+|||||||+|. |++-++.....+++++|++        ++....|..+++|..+... .+|   .++.|+|
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~-~l~---d~~FDvV  192 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDET-VID---GLEFDVL  192 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGG-GGG---GCCCSEE
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchh-hCC---CCCcCEE
Confidence            4455688999999999986 4555555445589999977        3334457788999998775 343   5789999


Q ss_pred             eeeeh
Q 035595          146 ILANL  150 (178)
Q Consensus       146 il~nl  150 (178)
                      ++..+
T Consensus       193 ~~~a~  197 (298)
T 3fpf_A          193 MVAAL  197 (298)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            88765

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.04  E-value=2.7e-06  Score=71.57  Aligned_cols=71  Identities=13%  Similarity=0.061  Sum_probs=49.4

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhh----eeeeeccccc----ccCCCcceEEEEcccccCCC-CCC-CCC--cceE
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMK----ILASLVDGEY----YNNGHENFSFLVDGEYYSNC-PAV-SGS--QNYV  145 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~----i~AtD~s~k~----~~~g~~N~~F~~~~~~~s~~-p~~-~~s--~~~v  145 (178)
                      ..+..+|||||||+|..+..|+.... .    ++|+|++.+.    ......|+.|..++.. .++ +.+ ...  ..+.
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~-~~~~~~~~~~~~~~~~~  117 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRFGELLELHAGDAL-TFDFGSIARPGDEPSLR  117 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGG-GCCGGGGSCSSSSCCEE
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChh-cCChhHhcccccCCceE
Confidence            34678999999999999999999875 5    9999988221    1101468999998774 222 333 211  4578


Q ss_pred             eeeeh
Q 035595          146 ILANL  150 (178)
Q Consensus       146 il~nl  150 (178)
                      |+.||
T Consensus       118 vv~Nl  122 (279)
T 3uzu_A          118 IIGNL  122 (279)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            88898

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.04  E-value=8.3e-06  Score=68.59  Aligned_cols=98  Identities=18%  Similarity=0.249  Sum_probs=61.2

Q ss_pred             chHHHHHHHhhc--CCCCccccc------c-cccccCCCceeEeeccCCch----hHHHhHHhh-----hhheeeeeccc
Q 035595           52 DSDAWKRFHSRH--SSGKFFKFT------A-ELSNCHEAALDAKGNFGNGS----LIADFSVVI-----KMKILASLVDG  113 (178)
Q Consensus        52 ~~~~Wd~Fy~rh--~~~~FFKdR------P-EL~~~~~~~~vLEvGCG~Gn----ta~pll~~~-----~~~i~AtD~s~  113 (178)
                      +.+.|+.|+..-  +...||.|.      . .+.+..+..+||++|||||-    .|+-|+...     ..+|+|||++.
T Consensus        68 ~~~e~~~l~~~lt~~~t~FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~  147 (274)
T 1af7_A           68 NSAEWQAFINALTTNLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDT  147 (274)
T ss_dssp             TCTHHHHHHHHHCCCCCCTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCH
T ss_pred             CHHHHHHHHHHHhhcCccccCChHHHHHHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCH
Confidence            456899998642  235899987      1 12222245799999999998    455555442     24799999881


Q ss_pred             --------cccc-----------------------CC-C-------cceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595          114 --------EYYN-----------------------NG-H-------ENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus       114 --------k~~~-----------------------~g-~-------~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                              ..|.                       .| .       .++.|.+.+... .|....+..|+|+..|+
T Consensus       148 ~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~-~~~~~~~~fDlI~crnv  222 (274)
T 1af7_A          148 EVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNV  222 (274)
T ss_dssp             HHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSS
T ss_pred             HHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCC-CCCCcCCCeeEEEECCc
Confidence                    1110                       11 0       258898877652 22112578999998664

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.04  E-value=2.4e-06  Score=66.53  Aligned_cols=70  Identities=11%  Similarity=0.095  Sum_probs=50.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCC-----CCCc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAV-----SGSQ  142 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~-----~~s~  142 (178)
                      .+..+|||||||+|..++.++...  ..+++++|++        +.....|.. +++|..+.....+ +.+     .++.
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l-~~~~~~~~~~~f  135 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI-PQLKKKYDVDTL  135 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG-GGTTTTSCCCCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH-HHHHHhcCCCce
Confidence            467899999999999999999853  3589999977        233345665 4999987763222 223     2789


Q ss_pred             ceEeeee
Q 035595          143 NYVILAN  149 (178)
Q Consensus       143 ~~vil~n  149 (178)
                      |+|++-.
T Consensus       136 D~V~~d~  142 (221)
T 3u81_A          136 DMVFLDH  142 (221)
T ss_dssp             SEEEECS
T ss_pred             EEEEEcC
Confidence            9988744

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.04  E-value=4.5e-06  Score=63.03  Aligned_cols=67  Identities=9%  Similarity=-0.121  Sum_probs=46.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|...+.++......++++|.+.        ++...+ .++.|..+... .++  + +++.|+|+..+
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~-~~~--~~~~~fD~v~~~~   97 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIR-KLP--FKDESMSFVYSYG   97 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTT-SCC--SCTTCEEEEEECS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchh-hCC--CCCCceeEEEEcC
Confidence            34679999999999987666655555899999872        222223 46888876654 332  3 57889998654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.03  E-value=5.6e-06  Score=67.88  Aligned_cols=67  Identities=12%  Similarity=0.009  Sum_probs=51.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..+++++... ..+++|+|++        +.+..+|+.|+.|..+... ..+ . .++.|+||+-
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~-~~~-~-~~~~D~Vi~d  193 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNR-DVE-L-KDVADRVIMG  193 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGG-GCC-C-TTCEEEEEEC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChH-HcC-c-cCCceEEEEC
Confidence            466899999999999999999874 3489999977        3445568889999987775 232 2 5677887764

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.03  E-value=8.8e-06  Score=65.87  Aligned_cols=67  Identities=10%  Similarity=-0.074  Sum_probs=49.4

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccC-CCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNN-GHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~-g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ..+..+|||+|||+|..+..++...  ..+++++|++        ++.... |..|+.|..+.....++   .++.|+|+
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~---~~~fD~Vi  184 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---DQMYDAVI  184 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---SCCEEEEE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc---CCCccEEE
Confidence            3467899999999999999999872  3589999987        223333 67789998876653222   46789888


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      +
T Consensus       185 ~  185 (275)
T 1yb2_A          185 A  185 (275)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.03  E-value=1.1e-05  Score=63.24  Aligned_cols=66  Identities=8%  Similarity=-0.042  Sum_probs=46.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccccc------cCCCcceEEEEcccccC---CCCCCCCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYY------NNGHENFSFLVDGEYYS---NCPAVSGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~------~~g~~N~~F~~~~~~~s---~~p~~~~s~~~vi  146 (178)
                      .+..+|||+|||+|.++..|+... ..+++++|++....      .....|+.|..+....+   ++  ++++.|+|+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~D~v~  148 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN--IVEKVDVIY  148 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT--TSCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc--cCccEEEEE
Confidence            356799999999999999999875 24899999883211      11226899988665421   22  236789887

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.03  E-value=7.1e-06  Score=64.00  Aligned_cols=65  Identities=9%  Similarity=0.028  Sum_probs=47.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..+..|+... ..++++|++        ++....+. ++.|..+... .++  ++++.|+|++.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~-~~~--~~~~fD~v~~~  112 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVL-EIA--FKNEFDAVTMF  112 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGG-GCC--CCSCEEEEEEC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChh-hcc--cCCCccEEEEc
Confidence            356799999999999999999874 489999987        22223343 6888887664 333  34678998863

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.03  E-value=9.9e-07  Score=67.98  Aligned_cols=68  Identities=7%  Similarity=0.037  Sum_probs=49.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCC-----CCCc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAV-----SGSQ  142 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~-----~~s~  142 (178)
                      .+..+|||||||+|..++.|+...  ..+++++|++        ++....|..+ ++|..+.....+ +.+     .++.
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~f  141 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTL-AELIHAGQAWQY  141 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-HHHHTTTCTTCE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHH-HHhhhccCCCCc
Confidence            467799999999999999999863  3589999987        3344557765 999987663222 122     2788


Q ss_pred             ceEee
Q 035595          143 NYVIL  147 (178)
Q Consensus       143 ~~vil  147 (178)
                      |+|++
T Consensus       142 D~v~~  146 (225)
T 3tr6_A          142 DLIYI  146 (225)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            98885

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.02  E-value=1.6e-06  Score=67.87  Aligned_cols=70  Identities=6%  Similarity=-0.011  Sum_probs=48.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++... ..++++|++....+....++.|.......-+.|--.++.|+|+..+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~  109 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEG-IESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISH  109 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHT-CCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCC-CcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECC
Confidence            356899999999999999888864 4799999984433322233777765553111122258899998864

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.02  E-value=1.1e-06  Score=65.17  Aligned_cols=68  Identities=12%  Similarity=-0.050  Sum_probs=46.3

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCC-cceEEEEcccccCCC--CCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNC--PAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~--p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++.....+++++|++.        .....+. .++.|..+.....++  +.-.++.|+|++
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            4679999999999999998875445899999872        2233344 478998876642111  111457787775

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.02  E-value=1.1e-06  Score=66.85  Aligned_cols=64  Identities=8%  Similarity=-0.059  Sum_probs=44.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhh-heeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKM-KILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~-~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||+|||+|..+..+    .. +++++|.+...   +.....++.|..+... .+| --.++.|+|++.+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGE-ALP-FPGESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTT-SCC-SCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccc-cCC-CCCCcEEEEEEcC
Confidence            6679999999999999888    33 78999988322   1111156888776554 333 1256889998765

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.01  E-value=6.1e-06  Score=64.85  Aligned_cols=69  Identities=13%  Similarity=0.077  Sum_probs=49.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..|+.....+++++|++        ++....|..|+.|..+....++++  .+..|+||+..
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~Ii~~~  166 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP--KAPYDVIIVTA  166 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--GCCEEEEEECS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC--CCCccEEEECC
Confidence            4667999999999999999998763489999976        333446777899988765323322  12368877643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.01  E-value=5.6e-06  Score=65.51  Aligned_cols=69  Identities=7%  Similarity=-0.029  Sum_probs=46.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc------ccCCCcceEEEEcccccCCC-CCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY------YNNGHENFSFLVDGEYYSNC-PAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~~-p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|.++..|+... ..+++|+|++...      ...+..|+.+..+....... ..++++.|+|+.
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEE
Confidence            466799999999999999998865 3479999988431      11123578887754431100 123578998875

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.00  E-value=1.5e-06  Score=67.63  Aligned_cols=67  Identities=7%  Similarity=-0.090  Sum_probs=47.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccC------------CCcceEEEEcccccCCCCCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNN------------GHENFSFLVDGEYYSNCPAV  138 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~------------g~~N~~F~~~~~~~s~~p~~  138 (178)
                      .+..+|||+|||+|..+..|+..- ..++|+|++.        +....            +..+++|.++... .+++.-
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g-~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~l~~~~   98 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF-ALTARD   98 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS-SSTHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCC-CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccc-cCCccc
Confidence            356799999999999999999874 4899999882        21110            1357899987765 444221


Q ss_pred             CCCcceEee
Q 035595          139 SGSQNYVIL  147 (178)
Q Consensus       139 ~~s~~~vil  147 (178)
                      .++.|+|+.
T Consensus        99 ~~~fD~v~~  107 (203)
T 1pjz_A           99 IGHCAAFYD  107 (203)
T ss_dssp             HHSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            268898874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.99  E-value=2.7e-06  Score=67.99  Aligned_cols=66  Identities=9%  Similarity=-0.020  Sum_probs=49.4

Q ss_pred             ceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCc--ceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           82 ALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHE--NFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~--N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      .+|||||||+|..++.|+...  ..+++++|++        +.....|..  +++|..+..... .+.+ +++.|+|++-
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~-l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV-MSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-GGGSCTTCEEEEEEC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH-HHHhcCCCcCeEEEc
Confidence            399999999999999999864  4589999977        333455665  799999776422 2334 6889998874

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.99  E-value=2.8e-06  Score=62.60  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=48.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..++.... .++++|.+...   +.....++.|..+. . +.   -.++.|+|++.+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~-~~---~~~~~D~v~~~~   83 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP-K-EI---PDNSVDFILFAN   83 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG-G-GS---CTTCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC-C-CC---CCCceEEEEEcc
Confidence            4567999999999999999999876 89999987321   11114578888866 1 22   257899998765

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=97.99  E-value=1.2e-05  Score=61.89  Aligned_cols=68  Identities=6%  Similarity=-0.159  Sum_probs=47.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----cc-CCCcceEEEEcccccCCCCCC-CCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----YN-NGHENFSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~~-~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++......++++|++...    .. ....++.|...... .++  + .++.|+|+..+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~--~~~~~fD~v~~~~  115 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLD-KLH--LPQDSFDLAYSSL  115 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGG-GCC--CCTTCEEEEEEES
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChh-hcc--CCCCCceEEEEec
Confidence            4678999999999999999988642279999987221    11 11136888887664 333  3 57889998765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.98  E-value=1.5e-05  Score=61.81  Aligned_cols=69  Identities=9%  Similarity=0.037  Sum_probs=47.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc----c--ccCCCcceEEEEcccccCC-CCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE----Y--YNNGHENFSFLVDGEYYSN-CPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k----~--~~~g~~N~~F~~~~~~~s~-~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|.++..|+...  ..+++++|++..    +  ......|+.|..+...... .+.++++.|+|++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence            456799999999999999999874  248999998842    1  0111268999887664211 1234568898885

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=97.98  E-value=7.2e-06  Score=62.91  Aligned_cols=89  Identities=11%  Similarity=0.081  Sum_probs=58.4

Q ss_pred             chHHHHHHHhhcCCCCccccc-c---ccc-c-cCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcc
Q 035595           52 DSDAWKRFHSRHSSGKFFKFT-A---ELS-N-CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHEN  122 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdR-P---EL~-~-~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N  122 (178)
                      -++.||.+|....  ..+... .   ++. . ..+..+|||+|||+|..+..|+.... +++++|++...   +.....+
T Consensus         8 ~a~~yd~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~   84 (239)
T 3bxo_A            8 HADVYDLFYLGRG--KDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPD   84 (239)
T ss_dssp             HHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCTT
T ss_pred             hHHHHHHHhhccH--hhHHHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCCC
Confidence            4568888885432  223222 1   111 1 14568999999999999999998765 89999987321   1222346


Q ss_pred             eEEEEcccccCCCCCCCCCcceEe
Q 035595          123 FSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus       123 ~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      +.|...... .++.  +++.|+|+
T Consensus        85 ~~~~~~d~~-~~~~--~~~~D~v~  105 (239)
T 3bxo_A           85 ATLHQGDMR-DFRL--GRKFSAVV  105 (239)
T ss_dssp             CEEEECCTT-TCCC--SSCEEEEE
T ss_pred             CEEEECCHH-Hccc--CCCCcEEE
Confidence            888887664 3333  67899998

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.97  E-value=8.6e-06  Score=64.01  Aligned_cols=68  Identities=12%  Similarity=0.192  Sum_probs=50.1

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceE
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      ...+..+|||+|||+|..+..++...  ..+++++|++        ++....|..+ +.|........++   .++.|+|
T Consensus        90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~v  166 (255)
T 3mb5_A           90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE---EENVDHV  166 (255)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC---CCSEEEE
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC---CCCcCEE
Confidence            34567899999999999999999883  4589999987        2333346666 9998877652322   4578888


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      ++
T Consensus       167 ~~  168 (255)
T 3mb5_A          167 IL  168 (255)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.96  E-value=9.4e-06  Score=62.42  Aligned_cols=63  Identities=8%  Similarity=0.035  Sum_probs=46.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      +..+|||+|||+|..+..++..  ..++++|++.        +....+ .++.|...... .++  ++++.|+|++.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~-~~~--~~~~fD~v~~~  103 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMR-ELE--LPEPVDAITIL  103 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGG-GCC--CSSCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChh-hcC--CCCCcCEEEEe
Confidence            3579999999999999999887  4899999872        222223 46888887654 333  24788998864

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.96  E-value=8.9e-06  Score=67.30  Aligned_cols=69  Identities=9%  Similarity=-0.006  Sum_probs=52.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+||+||||+|..++-++... ..+++|+|++        +.+...|+.+ ++|...+....++++  ...|++|+.|
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~--~~~D~IviaG   92 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEET--DQVSVITIAG   92 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGG--GCCCEEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccC--cCCCEEEEcC
Confidence            55799999999999999998864 3479999977        4445667765 999987775444432  2589999888


Q ss_pred             h
Q 035595          150 L  150 (178)
Q Consensus       150 l  150 (178)
                      .
T Consensus        93 ~   93 (225)
T 3kr9_A           93 M   93 (225)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.96  E-value=2e-06  Score=69.43  Aligned_cols=69  Identities=6%  Similarity=0.083  Sum_probs=49.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccCCCc-ceEEEEcccccCCCCCC-----CCCc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNNGHE-NFSFLVDGEYYSNCPAV-----SGSQ  142 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~g~~-N~~F~~~~~~~s~~p~~-----~~s~  142 (178)
                      .+..+|||||||+|..++.|+...  ..+++++|++.+        ....|.. +++|..+.... ..+.+     .++.
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~-~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD-TLHSLLNEGGEHQF  137 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHH-HHHHHHHHHCSSCE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-HHHHHhhccCCCCE
Confidence            356799999999999999999854  358999998732        3344664 79999877642 22233     4788


Q ss_pred             ceEeee
Q 035595          143 NYVILA  148 (178)
Q Consensus       143 ~~vil~  148 (178)
                      |+|++-
T Consensus       138 D~V~~d  143 (242)
T 3r3h_A          138 DFIFID  143 (242)
T ss_dssp             EEEEEE
T ss_pred             eEEEEc
Confidence            988764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.96  E-value=8.4e-06  Score=61.60  Aligned_cols=69  Identities=12%  Similarity=-0.051  Sum_probs=45.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcc-eEEEEcccccCCCCCC-CCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHEN-FSFLVDGEYYSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N-~~F~~~~~~~s~~p~~-~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..++... ..++++|.+....+....+ ..|...... .....+ +++.|+|++.+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~fD~v~~~~  101 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLDHVVLGDIE-TMDMPYEEEQFDCVIFGD  101 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSSEEEESCTT-TCCCCSCTTCEEEEEEES
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCcEEEcchh-hcCCCCCCCccCEEEECC
Confidence            467899999999999999999874 6899999873321111111 256655443 222223 57889998764

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.95  E-value=1.8e-06  Score=66.59  Aligned_cols=69  Identities=4%  Similarity=-0.092  Sum_probs=48.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCC----CCCcc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAV----SGSQN  143 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~----~~s~~  143 (178)
                      .+..+|||||||+|..+..++...  ..+++++|++        +.....|..+ ++|..+.....++ .+    .++.|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~fD  135 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQ-QIENEKYEPFD  135 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH-HHHHTTCCCCS
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH-HHHhcCCCCcC
Confidence            467899999999999999999874  3589999977        2334457765 9999876632111 12    25688


Q ss_pred             eEeee
Q 035595          144 YVILA  148 (178)
Q Consensus       144 ~vil~  148 (178)
                      +|++-
T Consensus       136 ~v~~d  140 (223)
T 3duw_A          136 FIFID  140 (223)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88753

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.95  E-value=5.7e-06  Score=59.24  Aligned_cols=66  Identities=14%  Similarity=-0.051  Sum_probs=47.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccccccCCCcceEEEEccccc-C----CCCCC-CCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEYYNNGHENFSFLVDGEYY-S----NCPAV-SGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~-s----~~p~~-~~s~~~vil  147 (178)
                      .+..+|||+|||+|..+..++...  ..+++++|++. ...  ..++.|....... +    ++.++ +++.|+|+.
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~   94 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP--IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC--CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc--cCcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence            356799999999999999999874  35899999997 433  3678888765531 1    11113 467898887

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.95  E-value=8.7e-06  Score=71.33  Aligned_cols=68  Identities=12%  Similarity=0.028  Sum_probs=51.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCC-CC-CCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCP-AV-SGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p-~~-~~s~~~vil  147 (178)
                      .+..+|||+|||+|+.+++|+... .+++|+|++        +.+..+|..|+.|.++.....++. .+ .++.|+||+
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~  362 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  362 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence            356799999999999999999885 489999987        334456788999999877533321 12 457788775

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.94  E-value=1.4e-05  Score=62.37  Aligned_cols=66  Identities=14%  Similarity=0.023  Sum_probs=48.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccC-CCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNN-GHENFSFLVDGEYYSNCPAV-SGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~-g~~N~~F~~~~~~~s~~p~~-~~s~~~vi  146 (178)
                      .+..+|||+|||+|..+..++...  ..+++++|.+.        +.... |..++.|....... .  .+ +++.|+|+
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~--~~~~~~~D~v~  171 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE-A--ELEEAAYDGVA  171 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG-C--CCCTTCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh-c--CCCCCCcCEEE
Confidence            467899999999999999999873  35899999772        22222 56789998876642 2  13 46789888


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      +
T Consensus       172 ~  172 (258)
T 2pwy_A          172 L  172 (258)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.94  E-value=3.8e-06  Score=64.04  Aligned_cols=67  Identities=9%  Similarity=-0.161  Sum_probs=46.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCc--ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHE--NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~--N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..|+... ..++++|++...-.....  ++.|...... .++  ..++.|+|+..+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~--~~~~fD~v~~~~  110 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRLGRPVRTMLFH-QLD--AIDAYDAVWAHA  110 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC--CCSCEEEEEECS
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhcCCceEEeeec-cCC--CCCcEEEEEecC
Confidence            356799999999999999999875 489999988322111101  4566665544 344  578899998865

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.92  E-value=5.1e-06  Score=62.81  Aligned_cols=66  Identities=8%  Similarity=-0.055  Sum_probs=48.0

Q ss_pred             CceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           81 AALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ..+|||+|||+|..+..|+... ..++++|++...   +.....++.|..+... .++ --.++.|+|++.+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~  110 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPSVTFHHGTIT-DLS-DSPKRWAGLLAWY  110 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTT-CCEEEECCCHHHHHHHHHHCTTSEEECCCGG-GGG-GSCCCEEEEEEES
T ss_pred             CCeEEEecCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCCCeEEeCccc-ccc-cCCCCeEEEEehh
Confidence            6899999999999999999874 489999988321   1222447888887664 232 1157899998865

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.92  E-value=1.2e-05  Score=59.11  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=47.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      .+..+|||+|||+|..+..++... ..++++|++...   +.....++.|...... .++  + +++.|+|++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~-~~~--~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPEARWVVGDLS-VDQ--ISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSEEEECCTT-TSC--CCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCCCCcEEEcccc-cCC--CCCCceeEEEEC
Confidence            356799999999999999999874 489999987321   1222346788876654 222  3 5788999876

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.92  E-value=6.6e-06  Score=60.33  Aligned_cols=68  Identities=9%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..++... .+++++|.+        ++....|. .++.|........++. + ++.|+|++.+
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~D~v~~~~  108 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-I-PDIDIAVVGG  108 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-S-CCEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-C-CCCCEEEECC
Confidence            456799999999999999999877 589999977        22233455 6788888665322221 1 4788888654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.91  E-value=9.2e-06  Score=64.54  Aligned_cols=65  Identities=12%  Similarity=-0.026  Sum_probs=43.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc----ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY----YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~----~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..+..|+... ..++++|++...    ......+  |...... .++ --.++.|+|++.+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~d~~-~~~-~~~~~fD~v~~~~  122 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVKN--VVEAKAE-DLP-FPSGAFEAVLALG  122 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCSC--EEECCTT-SCC-SCTTCEEEEEECS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcCCC--EEECcHH-HCC-CCCCCEEEEEEcc
Confidence            66899999999999999999875 489999987221    1111122  5554443 333 1257889988764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.91  E-value=7.7e-06  Score=61.69  Aligned_cols=68  Identities=6%  Similarity=-0.069  Sum_probs=45.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccc----cccCCCcceEEEEcccc-cCCCCCC-CCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE----YYNNGHENFSFLVDGEY-YSNCPAV-SGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k----~~~~g~~N~~F~~~~~~-~s~~p~~-~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..++++|++..    +...  .++.|...... ....+.. .++.|+|++.+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAA--GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHT--CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCC-CEEEEEcCCHHHHHHHHHh--cccccchhhHHhhcccccccCCCccEEEECc
Confidence            356899999999999999999884 48999998832    2222  45666665442 1112223 45599998764

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.91  E-value=1.3e-05  Score=67.41  Aligned_cols=70  Identities=9%  Similarity=-0.085  Sum_probs=52.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCC-CcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSG-SQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~-s~~~vil  147 (178)
                      .+..+||+||||+|-.++-++... ..+++|+|++        +.+...|+.+ ++|..++....+.   ++ ..|++|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~---~~~~~D~Ivi   96 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE---KKDAIDTIVI   96 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---GGGCCCEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC---ccccccEEEE
Confidence            356899999999999999998864 3479999987        4445668766 9999877653322   34 4899999


Q ss_pred             eehh
Q 035595          148 ANLK  151 (178)
Q Consensus       148 ~nl~  151 (178)
                      +|.-
T Consensus        97 agmG  100 (244)
T 3gnl_A           97 AGMG  100 (244)
T ss_dssp             EEEC
T ss_pred             eCCc
Confidence            8864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.90  E-value=9.3e-06  Score=69.18  Aligned_cols=65  Identities=15%  Similarity=0.141  Sum_probs=46.7

Q ss_pred             CCccccc---c---cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc------CCCcceEEEEcccc
Q 035595           66 GKFFKFT---A---ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN------NGHENFSFLVDGEY  131 (178)
Q Consensus        66 ~~FFKdR---P---EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~------~g~~N~~F~~~~~~  131 (178)
                      .+|..|.   .   +.....+..+|||||||+|..+..|+.... +++|+|++.+...      .+..|++|..++..
T Consensus        30 QnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l  106 (295)
T 3gru_A           30 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELYNNIEIIWGDAL  106 (295)
T ss_dssp             CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTT
T ss_pred             ccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccCCCeEEEECchh
Confidence            3577776   1   222334678999999999999999999864 8999998833211      14468999987764

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.90  E-value=1e-05  Score=65.34  Aligned_cols=66  Identities=9%  Similarity=0.018  Sum_probs=48.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..++.++... ...++|+|++.        ++...|..|+.|..+.....++   +++.|+||.
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~---~~~fD~Iv~  182 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA---GQQFAMIVS  182 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT---TCCEEEEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc---cCCccEEEE
Confidence            356799999999999999999763 35899999872        2333466789998876642222   567888775

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.90  E-value=7.7e-06  Score=63.99  Aligned_cols=69  Identities=7%  Similarity=0.036  Sum_probs=47.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc----c--ccCCCcceEEEEcccccCC-CCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE----Y--YNNGHENFSFLVDGEYYSN-CPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k----~--~~~g~~N~~F~~~~~~~s~-~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|.++..|+...  ..+++++|++..    +  ......|+.|..+...... -|...++.|+|++
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            456799999999999999999875  348999998721    1  1111267899887664211 1223568899886

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.89  E-value=6.4e-06  Score=62.67  Aligned_cols=63  Identities=17%  Similarity=0.141  Sum_probs=44.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc---CCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN---NGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~---~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..+..++......++++|++....+   ....+++|..+... .+    +++.|+||+
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~-~~----~~~~D~v~~  116 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVS-EI----SGKYDTWIM  116 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGG-GC----CCCEEEEEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHH-HC----CCCeeEEEE
Confidence            56799999999999999998874336999998732211   11117888887765 23    367787775

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.89  E-value=1.7e-05  Score=67.23  Aligned_cols=68  Identities=12%  Similarity=-0.001  Sum_probs=49.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------ccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG-------EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~-------k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..++.++.....+++|+|.+.       +...+|. .++.|..+... .++  ++++.|+||...
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~--~~~~~D~Ivs~~  124 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVE-EVS--LPEQVDIIISEP  124 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTT-TCC--CSSCEEEEEECC
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchh-hCC--CCCceeEEEEeC
Confidence            35689999999999999999886434899999873       2233465 57899887654 222  346889988754

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.89  E-value=1.3e-05  Score=67.37  Aligned_cols=68  Identities=15%  Similarity=0.031  Sum_probs=46.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc-----CCCcceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN-----NGHENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~-----~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      .+. +|||||||+|.....|+.... +++|+|++.+..+     ....|+.+..++...--.+.+.  ...+|+.||
T Consensus        46 ~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~--~~~~iv~Nl  118 (271)
T 3fut_A           46 FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVP--QGSLLVANL  118 (271)
T ss_dssp             CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSC--TTEEEEEEE
T ss_pred             CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhcc--CccEEEecC
Confidence            455 999999999999999999874 8999998732211     1125799998877421112221  245677887

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.87  E-value=5.2e-06  Score=63.80  Aligned_cols=68  Identities=13%  Similarity=0.064  Sum_probs=47.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..++.|+...  ..+++++|++.        .....|.. +++|..+.....+ |.+++ .|+|++
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~-fD~v~~  132 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIA-AGQRD-IDILFM  132 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHH-TTCCS-EEEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHh-ccCCC-CCEEEE
Confidence            356799999999999999999863  35899999872        22334554 4889887664222 33456 898875


Q ss_pred             e
Q 035595          148 A  148 (178)
Q Consensus       148 ~  148 (178)
                      -
T Consensus       133 ~  133 (210)
T 3c3p_A          133 D  133 (210)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.87  E-value=1.2e-05  Score=63.60  Aligned_cols=69  Identities=13%  Similarity=0.048  Sum_probs=47.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++... ...++++|++...   +.....++.|..+... .+| --.++.|+|+..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~  156 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLP-FSDTSMDAIIRIY  156 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCS-BCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchh-hCC-CCCCceeEEEEeC
Confidence            456799999999999999999873 3589999987321   1112246788876654 332 1146889988643

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.86  E-value=1.8e-05  Score=62.93  Aligned_cols=66  Identities=15%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------cccC-C--CcceEEEEcccccCCCCCC-CCCcce
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYNN-G--HENFSFLVDGEYYSNCPAV-SGSQNY  144 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~~-g--~~N~~F~~~~~~~s~~p~~-~~s~~~  144 (178)
                      .+..+|||+|||+|..+..|+...  ..+++++|++..        .... |  ..|+.|...... ..+  + .++.|+
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~-~~~--~~~~~~D~  174 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA-DSE--LPDGSVDR  174 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG-GCC--CCTTCEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH-hcC--CCCCceeE
Confidence            466799999999999999999863  458999998722        2222 4  568999887664 221  2 567898


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      |++
T Consensus       175 v~~  177 (280)
T 1i9g_A          175 AVL  177 (280)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.85  E-value=1e-05  Score=63.02  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=48.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh-------hheeeeeccc--------ccccCC-----CcceEEEEcccccCCCCCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK-------MKILASLVDG--------EYYNNG-----HENFSFLVDGEYYSNCPAV  138 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~-------~~i~AtD~s~--------k~~~~g-----~~N~~F~~~~~~~s~~p~~  138 (178)
                      .+..+|||+|||+|..+..|+....       .+++++|++.        +....|     ..|+.|.........+.  
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--  160 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP--  160 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG--
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc--
Confidence            4567999999999999999998654       3799999772        222223     46789988766432221  


Q ss_pred             CCCcceEeeee
Q 035595          139 SGSQNYVILAN  149 (178)
Q Consensus       139 ~~s~~~vil~n  149 (178)
                      .+..|+|++..
T Consensus       161 ~~~fD~I~~~~  171 (227)
T 1r18_A          161 NAPYNAIHVGA  171 (227)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCCccEEEECC
Confidence            35678877543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.83  E-value=2.6e-05  Score=66.26  Aligned_cols=66  Identities=9%  Similarity=-0.003  Sum_probs=49.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------ccccCCCcc-eEEEEcccccCCCCCC-CCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG-------EYYNNGHEN-FSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~-------k~~~~g~~N-~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      +..+|||||||+|..++.++..-..+++|+|.++       ++...|..+ +.|..+... .+  .+ .++.|+||..
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~--~~~~~~fD~Iis~  140 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVE-EV--ELPVEKVDIIISE  140 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTT-TC--CCSSSCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHH-Hc--cCCCCceEEEEEc
Confidence            5689999999999999999987434899999872       334456665 899987764 22  13 4789999863

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.82  E-value=3.7e-05  Score=61.80  Aligned_cols=68  Identities=12%  Similarity=0.029  Sum_probs=46.3

Q ss_pred             CCceeEeeccCCchhHHHhHHh-----hhhheeeeecccccccC--C-CcceEEEEcccccC-CCCCCC-CCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVV-----IKMKILASLVDGEYYNN--G-HENFSFLVDGEYYS-NCPAVS-GSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~-----~~~~i~AtD~s~k~~~~--g-~~N~~F~~~~~~~s-~~p~~~-~s~~~vil  147 (178)
                      +..+|||||||+|..+.-|+..     ...+++++|++....+.  + ..|+.|..+..... .-+.+. .+.|+|++
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~  158 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI  158 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence            4579999999999999999886     13589999998543221  1 25799998765411 012333 36888765

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.82  E-value=2.2e-05  Score=65.40  Aligned_cols=70  Identities=7%  Similarity=-0.087  Sum_probs=52.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCC-CcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSG-SQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~-s~~~vil  147 (178)
                      .+..+||+||||+|-.++-++... ..+++|+|++        +.+...|+.+ ++|..++....++   ++ ..|++|+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~---~~~~~D~Ivi   96 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE---EADNIDTITI   96 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC---GGGCCCEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc---cccccCEEEE
Confidence            356899999999999999998864 3479999987        4445567765 9999877653322   33 6899999


Q ss_pred             eehh
Q 035595          148 ANLK  151 (178)
Q Consensus       148 ~nl~  151 (178)
                      .|.-
T Consensus        97 aGmG  100 (230)
T 3lec_A           97 CGMG  100 (230)
T ss_dssp             EEEC
T ss_pred             eCCc
Confidence            9863

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.81  E-value=3e-05  Score=64.86  Aligned_cols=63  Identities=8%  Similarity=-0.169  Sum_probs=45.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCc------ceEEE--EcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHE------NFSFL--VDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~------N~~F~--~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|.....++.. . +++|+|++.-.   ......      |+.|.  +++.. .+|   +++.|+|+.
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~-~-~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~---~~~fD~Vvs  154 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ-P-NVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVT-KME---PFQADTVLC  154 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS-T-TEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGG-GCC---CCCCSEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc-C-CEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHh-hCC---CCCcCEEEE
Confidence            35679999999999999999887 4 89999988531   112222      78888  55443 344   568898875

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.80  E-value=2.7e-05  Score=66.93  Aligned_cols=66  Identities=12%  Similarity=0.002  Sum_probs=49.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc-------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD-------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||||||+|..++.++.....+++|+|.+       ++....|..+ +.|..+... .++  ++++.|+||.
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~--~~~~~D~Iv~  135 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVE-DIS--LPEKVDVIIS  135 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGG-GCC--CSSCEEEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchh-hcC--cCCcceEEEE
Confidence            4568999999999999999998743389999987       2244556655 899887664 232  2388999987

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.80  E-value=1.3e-05  Score=58.28  Aligned_cols=66  Identities=9%  Similarity=-0.083  Sum_probs=45.3

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCC---CCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAV---SGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~---~~s~~~vil~  148 (178)
                      +..+|||+|||+|..++.++.... .++++|++.        +....+. ++.|..+.....+ +.+   .++.|+|++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL-PEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH-HHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH-HhhhccCCceEEEEEC
Confidence            467899999999999999998764 499999872        2233445 7888886653111 111   2367877653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.80  E-value=2.7e-05  Score=67.53  Aligned_cols=65  Identities=14%  Similarity=-0.018  Sum_probs=47.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc---ceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE---NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~---N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++... ..+++++|++        +++..+|..   ++.|........++   +++.|+||+
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~---~~~fD~Ii~  298 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE---PFRFNAVLC  298 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC---TTCEEEEEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC---CCCeeEEEE
Confidence            45799999999999999999974 4589999987        333444544   58888876653221   467888775

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.79  E-value=4.5e-06  Score=64.42  Aligned_cols=69  Identities=7%  Similarity=0.087  Sum_probs=47.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCC-cceEEEEcccccCCCCCC-----CCCc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNCPAV-----SGSQ  142 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~p~~-----~~s~  142 (178)
                      .+..+|||+|||+|..++.++...  ..+++++|++.        .....|. .+++|..+.....+ +.+     .++.
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~~~~~~~~~  146 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL-DELLAAGEAGTF  146 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH-HHHHHTTCTTCE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHH-HHHHhcCCCCCc
Confidence            456899999999999999999863  35899999772        2233455 47899887653111 112     1577


Q ss_pred             ceEeee
Q 035595          143 NYVILA  148 (178)
Q Consensus       143 ~~vil~  148 (178)
                      |+|++-
T Consensus       147 D~v~~d  152 (229)
T 2avd_A          147 DVAVVD  152 (229)
T ss_dssp             EEEEEC
T ss_pred             cEEEEC
Confidence            888764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.79  E-value=3.9e-05  Score=59.45  Aligned_cols=66  Identities=15%  Similarity=0.091  Sum_probs=47.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCC-cceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..+..++.. ..+++++|++.        +....|. .++.|..........+  .++.|+|++
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~v~~  164 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--EGIFHAAFV  164 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--TTCBSEEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--CCcccEEEE
Confidence            35679999999999999999988 56899999772        2233455 5788887665422211  357888876

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.78  E-value=3.9e-05  Score=63.72  Aligned_cols=63  Identities=5%  Similarity=-0.178  Sum_probs=45.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCc------ceEEE--EcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHE------NFSFL--VDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~------N~~F~--~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||||||+|.....++..  .+++|+|++...   ......      |+.|.  +++.. .++   +++.|+|+.
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~---~~~fD~V~s  146 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIH-TLP---VERTDVIMC  146 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTT-TSC---CCCCSEEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHh-HCC---CCCCcEEEE
Confidence            35679999999999999998887  489999988531   112222      78888  54443 343   568898875

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.78  E-value=1.1e-05  Score=62.87  Aligned_cols=71  Identities=10%  Similarity=-0.005  Sum_probs=50.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCC--CCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAV--SGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~--~~s~~~vi  146 (178)
                      .+..+|||+|||+|..+..++... ..+++++|++        ++....|.. ++.|........++ .+  +++.|+|+
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I~  131 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE-KLELYPLFDVLF  131 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH-HHTTSCCEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH-hcccCCCccEEE
Confidence            466799999999999999999874 3589999977        223344664 58888866542222 22  46789888


Q ss_pred             eeeh
Q 035595          147 LANL  150 (178)
Q Consensus       147 l~nl  150 (178)
                      +-.-
T Consensus       132 ~~~~  135 (233)
T 2gpy_A          132 IDAA  135 (233)
T ss_dssp             EEGG
T ss_pred             ECCC
Confidence            7553

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.76  E-value=4.3e-05  Score=63.60  Aligned_cols=67  Identities=10%  Similarity=0.106  Sum_probs=49.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..+++++|+.       ++....|.. ++.|...+....+    +...|+|++.|
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~D~v~~~~  256 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL----PVTADVVLLSF  256 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----SCCEEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcC----CCCCCEEEEec
Confidence            356899999999999999999875 4578899953       233334554 7999987764333    34489998876

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.76  E-value=2.8e-05  Score=59.44  Aligned_cols=58  Identities=9%  Similarity=-0.069  Sum_probs=43.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..+.    ..++++|++..       ++.|...... .+| --+++.|+|+..+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~-------~~~~~~~d~~-~~~-~~~~~fD~v~~~~  123 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL-------DPRVTVCDMA-QVP-LEDESVDVAVFCL  123 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS-------STTEEESCTT-SCS-CCTTCEEEEEEES
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC-------CceEEEeccc-cCC-CCCCCEeEEEEeh
Confidence            456899999999999988873    47899999865       6677776554 232 1256889998765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.75  E-value=3.7e-05  Score=61.90  Aligned_cols=66  Identities=15%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCC-cceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..++.++...  ...++++|++.        .....|. .++.|........++   +++.|+|++
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~V~~  187 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD---EKDVDALFL  187 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS---CCSEEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc---CCccCEEEE
Confidence            356799999999999999999873  45899999772        2233355 578888866542222   357898886

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.74  E-value=2.1e-05  Score=60.78  Aligned_cols=71  Identities=11%  Similarity=0.106  Sum_probs=48.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh------hheeeeecc--------cccccCC-----CcceEEEEcccccCCCC--C
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK------MKILASLVD--------GEYYNNG-----HENFSFLVDGEYYSNCP--A  137 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~------~~i~AtD~s--------~k~~~~g-----~~N~~F~~~~~~~s~~p--~  137 (178)
                      .+..+|||||||+|..+..++....      .+++++|++        ++....|     ..|+.|.........+.  .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            4568999999999999999998653      489999977        2223334     56899988765422100  0


Q ss_pred             CCCCcceEeeee
Q 035595          138 VSGSQNYVILAN  149 (178)
Q Consensus       138 ~~~s~~~vil~n  149 (178)
                      -.+..|+|++..
T Consensus       159 ~~~~fD~I~~~~  170 (227)
T 2pbf_A          159 ELGLFDAIHVGA  170 (227)
T ss_dssp             HHCCEEEEEECS
T ss_pred             cCCCcCEEEECC
Confidence            135678876543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.74  E-value=4.1e-05  Score=57.73  Aligned_cols=48  Identities=15%  Similarity=-0.101  Sum_probs=38.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhh---hhheeeeecccccccCCCcceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI---KMKILASLVDGEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~---~~~i~AtD~s~k~~~~g~~N~~F~~~~~  130 (178)
                      +..+|||+|||+|..+..|+...   ..+++|+|++...   ...++.|.++..
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---~~~~v~~~~~d~   72 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---PIPNVYFIQGEI   72 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---CCTTCEEEECCT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---CCCCceEEEccc
Confidence            45789999999999999999874   2589999999643   346788887655

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.74  E-value=4.3e-05  Score=61.93  Aligned_cols=69  Identities=12%  Similarity=0.006  Sum_probs=48.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------cccc---CCCc-ceEEEEcccccCCC----CCC-CC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYN---NGHE-NFSFLVDGEYYSNC----PAV-SG  140 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~---~g~~-N~~F~~~~~~~s~~----p~~-~~  140 (178)
                      .+..+|||+|||+|..++.|+... ...++++|++.        ....   .+.. ++.|..+......+    ..+ ++
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            456799999999999999999875 35899999872        2233   5555 48888876642211    124 56


Q ss_pred             CcceEee
Q 035595          141 SQNYVIL  147 (178)
Q Consensus       141 s~~~vil  147 (178)
                      +.|+||.
T Consensus       115 ~fD~Vv~  121 (260)
T 2ozv_A          115 HFHHVIM  121 (260)
T ss_dssp             CEEEEEE
T ss_pred             CcCEEEE
Confidence            7888776

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.73  E-value=4.4e-05  Score=64.73  Aligned_cols=67  Identities=10%  Similarity=-0.019  Sum_probs=48.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------ccccCCC-cceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG-------EYYNNGH-ENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~-------k~~~~g~-~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      .+..+|||||||+|..++.++.....+++|+|.+.       +....|. .++.|..+... .+  .+ .++.|+||..
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~--~~~~~~~D~Ivs~  138 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE-EV--HLPVEKVDVIISE  138 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TS--CCSCSCEEEEEEC
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHH-Hh--cCCCCcEEEEEEc
Confidence            45679999999999999998886434899999872       3344555 57899886654 22  23 3689998853

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.73  E-value=9.5e-06  Score=67.11  Aligned_cols=69  Identities=9%  Similarity=-0.019  Sum_probs=44.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhh--eeeeeccccc----c--cCCCcceEEEEcccccCCC-CCCC--CCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMK--ILASLVDGEY----Y--NNGHENFSFLVDGEYYSNC-PAVS--GSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~--i~AtD~s~k~----~--~~g~~N~~F~~~~~~~s~~-p~~~--~s~~~vil  147 (178)
                      .+..+|||||||+|.... +. ... +  ++|+|++.+.    .  ..+..|+.|..++.. .++ +.+.  +..+.+|+
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~-~~~-~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~-~~~~~~~~~~~~~~~~vv   95 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PV-GER-LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAM-TFNFGELAEKMGQPLRVF   95 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HH-HTT-CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGG-GCCHHHHHHHHTSCEEEE
T ss_pred             CCcCEEEEECCCCcHHHH-hh-hCC-CCeEEEEECCHHHHHHHHHHhccCCceEEEECchh-hCCHHHhhcccCCceEEE
Confidence            456789999999999999 54 443 6  9999987211    1  112358999987774 222 1120  13457888


Q ss_pred             eehh
Q 035595          148 ANLK  151 (178)
Q Consensus       148 ~nl~  151 (178)
                      .||-
T Consensus        96 sNlP   99 (252)
T 1qyr_A           96 GNLP   99 (252)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            8874

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.72  E-value=7.5e-05  Score=63.15  Aligned_cols=70  Identities=6%  Similarity=-0.106  Sum_probs=49.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..+++++|+.       ++....|. .+++|........- ..+|++.|+|++.+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRD-VPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSS-CCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccC-CCCCCCcCEEEEec
Confidence            356899999999999999999864 4578888854       33334454 47999987765221 02457899999865

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.72  E-value=1.6e-05  Score=63.44  Aligned_cols=67  Identities=7%  Similarity=-0.021  Sum_probs=42.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc-------cccccCCCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD-------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vi  146 (178)
                      .+..+|||||||+|.++.-|+...-..++++|++       .+.......++.|...... ...+.+ .++-|.++
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWE-DVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHH-HHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHH-hhcccccccCCceEE
Confidence            4567999999999999999887643478899977       1112223345677665542 122223 45666654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.72  E-value=6.9e-05  Score=63.17  Aligned_cols=64  Identities=6%  Similarity=0.019  Sum_probs=47.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhh--hhheeeeecccccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++...  ...++|+|++..+.... .++.+..++.. ..++  .+..|+||.
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~~~~~~~D~~-~~~~--~~~fD~Ii~  104 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PWAEGILADFL-LWEP--GEAFDLILG  104 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TTEEEEESCGG-GCCC--SSCEEEEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CCCcEEeCChh-hcCc--cCCCCEEEE
Confidence            45699999999999999999763  35899999997665544 57888887664 2222  357787776

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.72  E-value=4.4e-05  Score=62.36  Aligned_cols=69  Identities=6%  Similarity=-0.076  Sum_probs=47.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------cc-------CCCcceEEEEcccccCCC--CCC---C
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YN-------NGHENFSFLVDGEYYSNC--PAV---S  139 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~-------~g~~N~~F~~~~~~~s~~--p~~---~  139 (178)
                      +..+|||+|||+|..+..++.....+++++|++...        ..       .+..++.|.++... .++  ..+   +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS-KELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT-TSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc-ccchhhhcccCC
Confidence            567999999999999999987544489999987221        11       13457899887664 222  223   3


Q ss_pred             CCcceEeeee
Q 035595          140 GSQNYVILAN  149 (178)
Q Consensus       140 ~s~~~vil~n  149 (178)
                      ++.|+|+..+
T Consensus       113 ~~fD~V~~~~  122 (313)
T 3bgv_A          113 MCFDICSCQF  122 (313)
T ss_dssp             CCEEEEEEET
T ss_pred             CCEEEEEEec
Confidence            5899998754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.71  E-value=7.8e-06  Score=69.92  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=40.3

Q ss_pred             CceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      ..+|||+|||+|+.+++|+.... +++|+|++        +.+..+|+.|++|..+..
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~-~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~  270 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFD-RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA  270 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSS-EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCS
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCH
Confidence            46799999999999999998664 89999977        334556888999998765

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.69  E-value=8.9e-06  Score=65.81  Aligned_cols=68  Identities=16%  Similarity=0.123  Sum_probs=48.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCC-cceEEEEcccccCCCCCC------CCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGH-ENFSFLVDGEYYSNCPAV------SGS  141 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~-~N~~F~~~~~~~s~~p~~------~~s  141 (178)
                      .++.+|||||||+|..++.|+...  ..+++++|++.        .....|. .+++|..+.....++ .+      .++
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~-~l~~~~~~~~~  156 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD-EMIKDEKNHGS  156 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH-HHHHSGGGTTC
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH-HHHhccCCCCC
Confidence            456899999999999999999873  35899999873        2234566 468998876632222 12      467


Q ss_pred             cceEee
Q 035595          142 QNYVIL  147 (178)
Q Consensus       142 ~~~vil  147 (178)
                      .|+|++
T Consensus       157 fD~V~~  162 (247)
T 1sui_A          157 YDFIFV  162 (247)
T ss_dssp             BSEEEE
T ss_pred             EEEEEE
Confidence            888875

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.68  E-value=3.3e-05  Score=64.19  Aligned_cols=69  Identities=14%  Similarity=0.183  Sum_probs=45.7

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc--------ccc-------CC----CcceEEEEcccccCCCC
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE--------YYN-------NG----HENFSFLVDGEYYSNCP  136 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k--------~~~-------~g----~~N~~F~~~~~~~s~~p  136 (178)
                      ..+..+|||+|||+|..+..++...  ..+++++|++..        ...       ++    ..|++|...+.. ...+
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~-~~~~  181 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS-GATE  181 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT-CCC-
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChH-Hccc
Confidence            3567899999999999999999875  258999998721        111       11    357999887665 3333


Q ss_pred             CC-CCCcceEee
Q 035595          137 AV-SGSQNYVIL  147 (178)
Q Consensus       137 ~~-~~s~~~vil  147 (178)
                      .+ .++.|+|++
T Consensus       182 ~~~~~~fD~V~~  193 (336)
T 2b25_A          182 DIKSLTFDAVAL  193 (336)
T ss_dssp             ------EEEEEE
T ss_pred             ccCCCCeeEEEE
Confidence            45 467898886

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.67  E-value=4.2e-05  Score=63.46  Aligned_cols=64  Identities=11%  Similarity=0.040  Sum_probs=46.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCc---ceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQ---NYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~---~~vil  147 (178)
                      +..+|||+|||+|..++.|+......++|+|++        +.+...|..+ +.|..+.....    ++++.   |+||.
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~----~~~~f~~~D~Ivs  198 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP----FKEKFASIEMILS  198 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG----GGGGTTTCCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh----cccccCCCCEEEE
Confidence            457999999999999999998733489999987        3334457765 99998766422    23456   77664

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=97.67  E-value=6.5e-05  Score=64.11  Aligned_cols=71  Identities=20%  Similarity=0.062  Sum_probs=49.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecccc----cccC---------C---CcceEEEEcccccC--C-CCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGE----YYNN---------G---HENFSFLVDGEYYS--N-CPA  137 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k----~~~~---------g---~~N~~F~~~~~~~s--~-~p~  137 (178)
                      .+..+|||||||+|..+..|+...  ...++++|++..    +...         |   ..|+.|..+....-  + +..
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            456899999999999999999874  348999998721    1111         2   25899999766421  1 113


Q ss_pred             C-CCCcceEeeee
Q 035595          138 V-SGSQNYVILAN  149 (178)
Q Consensus       138 ~-~~s~~~vil~n  149 (178)
                      + .++.|+|+..+
T Consensus       162 ~~~~~fD~V~~~~  174 (383)
T 4fsd_A          162 VPDSSVDIVISNC  174 (383)
T ss_dssp             CCTTCEEEEEEES
T ss_pred             CCCCCEEEEEEcc
Confidence            4 67999999765

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.66  E-value=2.5e-05  Score=65.59  Aligned_cols=72  Identities=13%  Similarity=0.015  Sum_probs=51.7

Q ss_pred             cccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcc
Q 035595           74 ELSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQN  143 (178)
Q Consensus        74 EL~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~  143 (178)
                      .++...+..+|||+|||+|..+..|+...  ...++|+|++        ++....|+.|+.|...... .+++ .+++.|
T Consensus       112 ~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~-~~~~-~~~~fD  189 (315)
T 1ixk_A          112 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL-HIGE-LNVEFD  189 (315)
T ss_dssp             HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG-GGGG-GCCCEE
T ss_pred             HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChh-hccc-ccccCC
Confidence            33444567899999999999999999864  3579999987        3334457788999886654 2222 356788


Q ss_pred             eEee
Q 035595          144 YVIL  147 (178)
Q Consensus       144 ~vil  147 (178)
                      +|++
T Consensus       190 ~Il~  193 (315)
T 1ixk_A          190 KILL  193 (315)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7775

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.66  E-value=6.2e-05  Score=63.24  Aligned_cols=66  Identities=11%  Similarity=-0.007  Sum_probs=46.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc-------cccccCCCc-ceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD-------GEYYNNGHE-NFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k~~~~g~~-N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      +..+|||||||+|..++.++..-..+++|+|.+       ++...+|.. ++.|..+... .++  + .++.|+||..
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~--~~~~~~D~Ivs~  112 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE-DVH--LPFPKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TSC--CSSSCEEEEEEC
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchh-hcc--CCCCcccEEEEe
Confidence            467999999999999998887643489999987       223345554 4888886653 222  3 3678988853

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.66  E-value=4.8e-05  Score=62.77  Aligned_cols=72  Identities=11%  Similarity=0.084  Sum_probs=49.7

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccccc------ccCCCcceEEEEcccccCCC-CCCCCCcceEeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEY------YNNGHENFSFLVDGEYYSNC-PAVSGSQNYVILA  148 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~~-p~~~~s~~~vil~  148 (178)
                      ..+..+||++|||+|.++..++..+  .-+++|+|++...      ......|+.|..++...... ..+.++.|+|+ .
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~-~  152 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLY-V  152 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEE-E
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEE-e
Confidence            3467899999999999999998864  3489999988421      11123689998876642211 23467889765 4


Q ss_pred             eh
Q 035595          149 NL  150 (178)
Q Consensus       149 nl  150 (178)
                      |+
T Consensus       153 d~  154 (232)
T 3id6_C          153 DI  154 (232)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.66  E-value=1.4e-05  Score=68.50  Aligned_cols=66  Identities=12%  Similarity=0.057  Sum_probs=49.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC---CCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV---SGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~---~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++... .+++++|++        +.+..+|..|+.|.++....- .+.+   .++.|+||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~-~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL-LRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH-HHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHH-HHHHHhcCCCeeEEEE
Confidence            56799999999999999999984 589999987        334556788899998776321 1222   346787775

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.65  E-value=5.3e-05  Score=58.46  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=46.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh--hheeeeeccc--------ccccCC-----CcceEEEEcccccCCCCCCCCCcc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK--MKILASLVDG--------EYYNNG-----HENFSFLVDGEYYSNCPAVSGSQN  143 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~--------k~~~~g-----~~N~~F~~~~~~~s~~p~~~~s~~  143 (178)
                      .+..+|||+|||+|..+..|+....  .+++++|++.        +....|     ..|+.|....... .++ -.++.|
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~fD  153 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM-GYA-EEAPYD  153 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG-CCG-GGCCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc-Ccc-cCCCcC
Confidence            4568999999999999999998642  4899999872        222222     4578888866541 111 145678


Q ss_pred             eEeee
Q 035595          144 YVILA  148 (178)
Q Consensus       144 ~vil~  148 (178)
                      +|++.
T Consensus       154 ~i~~~  158 (226)
T 1i1n_A          154 AIHVG  158 (226)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            77654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.64  E-value=3.1e-05  Score=62.83  Aligned_cols=71  Identities=8%  Similarity=-0.068  Sum_probs=43.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-----hhh--eeeeecc--------ccccc-CCCcceEEEEcccc-cCCCC----C
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-----KMK--ILASLVD--------GEYYN-NGHENFSFLVDGEY-YSNCP----A  137 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-----~~~--i~AtD~s--------~k~~~-~g~~N~~F~~~~~~-~s~~p----~  137 (178)
                      .+..+|||||||+|.+++.++...     ...  ++++|.+        +++.. .+..|+.|...... ..+++    +
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            356799999999999887766432     122  3899977        22222 36677777643221 12221    2


Q ss_pred             C-CCCcceEeeee
Q 035595          138 V-SGSQNYVILAN  149 (178)
Q Consensus       138 ~-~~s~~~vil~n  149 (178)
                      . .++.|+|+..+
T Consensus       131 ~~~~~fD~V~~~~  143 (292)
T 2aot_A          131 KELQKWDFIHMIQ  143 (292)
T ss_dssp             TCCCCEEEEEEES
T ss_pred             cCCCceeEEEEee
Confidence            3 57899998765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.63  E-value=7.6e-05  Score=60.85  Aligned_cols=69  Identities=10%  Similarity=0.042  Sum_probs=49.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..++... ..+++++|++       ++....|.. +++|....... .  .+++..|+|++.|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--~~~~~~D~v~~~~  240 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE-V--DYGNDYDLVLLPN  240 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT-S--CCCSCEEEEEEES
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc-C--CCCCCCcEEEEcc
Confidence            456899999999999999999874 3589999977       222233444 59999876642 2  2445589999865


Q ss_pred             h
Q 035595          150 L  150 (178)
Q Consensus       150 l  150 (178)
                      .
T Consensus       241 ~  241 (335)
T 2r3s_A          241 F  241 (335)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.63  E-value=6.1e-05  Score=67.68  Aligned_cols=67  Identities=12%  Similarity=-0.001  Sum_probs=49.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------ccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG-------EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~-------k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..++.++..-..+++|+|++.       .....|. .++.|...... .++  ++++.|++|...
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~-~~~--~~~~fD~Ivs~~  232 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVE-EVS--LPEQVDIIISEP  232 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTT-TCC--CSSCEEEEECCC
T ss_pred             CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchh-hCc--cCCCeEEEEEeC
Confidence            5679999999999999998875444899999873       3344566 57999987664 222  356889988743

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.62  E-value=2.3e-05  Score=70.95  Aligned_cols=66  Identities=11%  Similarity=-0.088  Sum_probs=49.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCC-CCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCP-AVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p-~~~~s~~~vil  147 (178)
                      .+.+||+||||.|-.+.+|+..-. .++++|++        .++...|.-+++|.+.... .+.. .-+++-|+|+.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIE-EVIAALEEGEFDLAIG  140 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHH-HHHHHCCTTSCSEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHH-HHhhhccCCCccEEEE
Confidence            357899999999999999998754 89999977        3345667778999997663 2322 22678898864

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.62  E-value=6.8e-05  Score=66.37  Aligned_cols=63  Identities=13%  Similarity=-0.048  Sum_probs=46.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|+.+++|+.... +++++|++        +.+..+|.. +.|..+... .+.+.   +.|+||+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~-~~~~~---~fD~Vv~  359 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDR-EVSVK---GFDTVIV  359 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTT-TCCCT---TCSEEEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChH-HcCcc---CCCEEEE
Confidence            4567999999999999999998764 89999977        233345666 899987765 22222   6777776

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.62  E-value=1.3e-05  Score=63.94  Aligned_cols=70  Identities=17%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc-ceEEEEcccccCCCC----CC-CCCc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE-NFSFLVDGEYYSNCP----AV-SGSQ  142 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~~s~~p----~~-~~s~  142 (178)
                      .++.+|||||||+|..++.++...  ..+++++|++.        .....|.. +++|..+.....++.    +. .++.
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            456899999999999999999873  35899999872        22345665 499998766322221    11 4678


Q ss_pred             ceEeee
Q 035595          143 NYVILA  148 (178)
Q Consensus       143 ~~vil~  148 (178)
                      |+|++-
T Consensus       149 D~I~~d  154 (237)
T 3c3y_A          149 DFGFVD  154 (237)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            888763

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.62  E-value=6.1e-05  Score=63.31  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=49.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+...|||+|||+|..++.++...  ...++++|++        +.+...|+.+++|.+.... .+++.. ++.|+||.
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~-~~~~~~-~~~D~Ii~  278 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR-HLPRFF-PEVDRILA  278 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG-GGGGTC-CCCSEEEE
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh-hCcccc-CCCCEEEE
Confidence            466799999999999999999864  3589999977        4445667778999997775 333222 23577665

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.61  E-value=3.5e-05  Score=62.26  Aligned_cols=63  Identities=17%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++.... +++++|++.        ++..+++. +.|..+.....++   .++.|+||.
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~---~~~fD~Vv~  190 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP---FGPFDLLVA  190 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG---GCCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc---CCCCCEEEE
Confidence            567999999999999999888665 899999872        23334555 7888765532221   457888875

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.60  E-value=2.9e-05  Score=65.06  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=43.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc------ceEEEEccccc-----CCCCCC-C
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE------NFSFLVDGEYY-----SNCPAV-S  139 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~------N~~F~~~~~~~-----s~~p~~-~  139 (178)
                      +..+|||||||+|..+..++......++++|++        +++...+..      +++|.+.....     .++..+ .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            457899999999987777766433479999987        232223332      36677654411     112112 5


Q ss_pred             CCcceEeeee
Q 035595          140 GSQNYVILAN  149 (178)
Q Consensus       140 ~s~~~vil~n  149 (178)
                      ++-|+|+..+
T Consensus       128 ~~FD~V~~~~  137 (302)
T 2vdw_A          128 GKFNIIDWQF  137 (302)
T ss_dssp             SCEEEEEEES
T ss_pred             CCeeEEEECc
Confidence            7899987654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.60  E-value=3.6e-05  Score=57.54  Aligned_cols=68  Identities=6%  Similarity=-0.006  Sum_probs=40.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccccc--------cCCCcceEEEEcccccCCCC--CCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYY--------NNGHENFSFLVDGEYYSNCP--AVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~--------~~g~~N~~F~~~~~~~s~~p--~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..+..++... ..+++++|++....        ..|. ++.|.++.....++.  ...++.|+|+.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            456899999999999999999874 34899999873322        2233 556665444321111  01377887775

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.60  E-value=4.3e-05  Score=62.61  Aligned_cols=33  Identities=12%  Similarity=-0.026  Sum_probs=27.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeec-c
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLV-D  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~-s  112 (178)
                      +..+|||+|||+|..++.++.....+++++|+ +
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~  112 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD  112 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSC
T ss_pred             CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCC
Confidence            45799999999999999888754337999999 6

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.59  E-value=7.2e-05  Score=55.96  Aligned_cols=64  Identities=8%  Similarity=-0.047  Sum_probs=44.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh----------hheeeeecccccccCCCcceEEE-EcccccCCC------CCC-CCC
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK----------MKILASLVDGEYYNNGHENFSFL-VDGEYYSNC------PAV-SGS  141 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~----------~~i~AtD~s~k~~~~g~~N~~F~-~~~~~~s~~------p~~-~~s  141 (178)
                      +..+|||+|||+|..+..|+....          .+++++|++...   +..++.|. .+... ..+      ..+ .++
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~   97 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---PLEGATFLCPADVT-DPRTSQRILEVLPGRR   97 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---CCTTCEEECSCCTT-SHHHHHHHHHHSGGGC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---cCCCCeEEEeccCC-CHHHHHHHHHhcCCCC
Confidence            467999999999999999998752          479999999643   34577887 54432 110      012 247


Q ss_pred             cceEee
Q 035595          142 QNYVIL  147 (178)
Q Consensus       142 ~~~vil  147 (178)
                      .|+|+.
T Consensus        98 fD~V~~  103 (196)
T 2nyu_A           98 ADVILS  103 (196)
T ss_dssp             EEEEEE
T ss_pred             CcEEEe
Confidence            888885

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.59  E-value=7.8e-05  Score=61.69  Aligned_cols=68  Identities=12%  Similarity=0.033  Sum_probs=48.8

Q ss_pred             CceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           81 AALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ..+|||||||+|..+..|+... ..+++++|..       ++....+.. +++|...... ..++.++++.|+|++.|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~D~v~~~~  256 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLL-DARNFEGGAADVVMLND  256 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTT-CGGGGTTCCEEEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcc-cCcccCCCCccEEEEec
Confidence            6899999999999999999864 4577888864       222334543 5999987764 22222456799999865

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.58  E-value=8.3e-05  Score=63.75  Aligned_cols=64  Identities=8%  Similarity=0.029  Sum_probs=45.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .++.+||+||||+|-.++|++  ..-.++|+|++        ..+...| .+++|.+.+..   ...++++.|+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~---~~~~~~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVL---CAPPAEAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTT---TSCCCCBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeecc---cCCCCCCcchHHHH
Confidence            457899999999999999999  43489999988        2222334 45667766554   22246689988654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.57  E-value=9e-05  Score=64.61  Aligned_cols=64  Identities=9%  Similarity=0.004  Sum_probs=46.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++.++... .+++++|++        +++...+.. ++|...+.. ..++. .++.|+||+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~-~~~~~-~~~fD~Ii~  304 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVD-EALTE-EARFDIIVT  304 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTT-TTSCT-TCCEEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchh-hcccc-CCCeEEEEE
Confidence            56799999999999999999885 489999987        223334443 788876664 22221 478888875

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.56  E-value=7.1e-05  Score=58.86  Aligned_cols=52  Identities=21%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcc-eEEEEccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHEN-FSFLVDGE  130 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~  130 (178)
                      .+..+|||||||+|..+..|+...  ..+++++|++        +.....|..+ +.|..+..
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            457899999999999999999874  3589999977        2333456665 89988765

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.55  E-value=0.00015  Score=60.61  Aligned_cols=66  Identities=6%  Similarity=-0.066  Sum_probs=46.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc-----ccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG-----EYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~-----k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..+++++|.+.     +....+. .+++|.......+.    | +.|+|++.+
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----p-~~D~v~~~~  255 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREV----P-HADVHVLKR  255 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCC----C-CCSEEEEES
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCC----C-CCcEEEEeh
Confidence            457899999999999999999864 34667778651     2222233 35999987764233    3 899999876

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=97.55  E-value=0.00014  Score=59.97  Aligned_cols=66  Identities=9%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..+..|+... ..+++++|+.       ++....|. .+++|.......+.    |.+.|+|++.|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----p~~~D~v~~~~  243 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPL----PAGAGGYVLSA  243 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----CCSCSEEEEES
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCC----CCCCcEEEEeh
Confidence            45799999999999999999864 4467888853       23334454 57999987764233    33799999876

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.54  E-value=9.4e-05  Score=65.09  Aligned_cols=71  Identities=17%  Similarity=0.057  Sum_probs=52.7

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCC-CCcce
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVS-GSQNY  144 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~-~s~~~  144 (178)
                      +...+..+|||+|||+|..+..|+....  ..++|+|++        ++....|..|+.|...... .+++.++ ++.|+
T Consensus       255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~-~~~~~~~~~~fD~  333 (450)
T 2yxl_A          255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDAR-KAPEIIGEEVADK  333 (450)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTT-CCSSSSCSSCEEE
T ss_pred             cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChh-hcchhhccCCCCE
Confidence            3445678999999999999999998642  479999987        2334458888999886654 3444464 67888


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      |++
T Consensus       334 Vl~  336 (450)
T 2yxl_A          334 VLL  336 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.54  E-value=0.00013  Score=60.52  Aligned_cols=67  Identities=9%  Similarity=0.062  Sum_probs=47.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ...++++|+.       ++....|.. ++.|........    ++...|+|++.|
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~D~v~~~~  257 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP----LPRKADAIILSF  257 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC----CSSCEEEEEEES
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC----CCCCccEEEEcc
Confidence            356799999999999999999865 3467788842       233344554 799998766423    334589998866

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.54  E-value=8e-06  Score=67.64  Aligned_cols=66  Identities=12%  Similarity=0.056  Sum_probs=47.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------cc--------ccCCCcc-eEEEEcccccCCCCCCC---C
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG-------EY--------YNNGHEN-FSFLVDGEYYSNCPAVS---G  140 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~-------k~--------~~~g~~N-~~F~~~~~~~s~~p~~~---~  140 (178)
                      +..+|||+|||+|..++.++... .+++++|++.       .+        ..+|+.| ++|..+... ...+.++   +
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~-~~l~~~~~~~~  160 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA-EQMPALVKTQG  160 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH-HHHHHHHHHHC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH-HHHHhhhccCC
Confidence            45799999999999999999875 4899999886       22        2234555 999987664 1112232   5


Q ss_pred             CcceEee
Q 035595          141 SQNYVIL  147 (178)
Q Consensus       141 s~~~vil  147 (178)
                      +.|+|++
T Consensus       161 ~fD~V~~  167 (258)
T 2r6z_A          161 KPDIVYL  167 (258)
T ss_dssp             CCSEEEE
T ss_pred             CccEEEE
Confidence            7787775

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.54  E-value=2.3e-05  Score=63.96  Aligned_cols=73  Identities=12%  Similarity=0.020  Sum_probs=50.6

Q ss_pred             ccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC---CCC
Q 035595           75 LSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV---SGS  141 (178)
Q Consensus        75 L~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~---~~s  141 (178)
                      ++...+..+|||+|||+|..+..|+...  ...++|+|++        +++...|..|+.|...... .+++.+   .++
T Consensus        78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~-~~~~~~~~~~~~  156 (274)
T 3ajd_A           78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMR-KYKDYLLKNEIF  156 (274)
T ss_dssp             HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHH-HHHHHHHHTTCC
T ss_pred             HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChH-hcchhhhhcccc
Confidence            3444567899999999999999999853  2589999987        3334457788999886653 122111   356


Q ss_pred             cceEeee
Q 035595          142 QNYVILA  148 (178)
Q Consensus       142 ~~~vil~  148 (178)
                      .|+|++-
T Consensus       157 fD~Vl~d  163 (274)
T 3ajd_A          157 FDKILLD  163 (274)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEc
Confidence            7777653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.52  E-value=1.6e-05  Score=63.01  Aligned_cols=69  Identities=10%  Similarity=0.029  Sum_probs=47.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCc-ceEEEEcccccCCCCCC-----CCCc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHE-NFSFLVDGEYYSNCPAV-----SGSQ  142 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~-N~~F~~~~~~~s~~p~~-----~~s~  142 (178)
                      .+..+|||||||+|.+++.++...  ..+++++|++.        .....|.. +++|..+.....++ .+     .++.
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~-~l~~~~~~~~f  149 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLE-QLTQGKPLPEF  149 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH-HHHTSSSCCCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH-HHHhcCCCCCc
Confidence            356799999999999999999864  34899999872        22334554 58998876531111 12     1678


Q ss_pred             ceEeee
Q 035595          143 NYVILA  148 (178)
Q Consensus       143 ~~vil~  148 (178)
                      |+|++-
T Consensus       150 D~V~~d  155 (232)
T 3cbg_A          150 DLIFID  155 (232)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            888754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.51  E-value=3.8e-05  Score=69.09  Aligned_cols=71  Identities=10%  Similarity=0.106  Sum_probs=47.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh-hheeeeecccc---------------cccCC--CcceEEEEcccccC-CC-CCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK-MKILASLVDGE---------------YYNNG--HENFSFLVDGEYYS-NC-PAV  138 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s~k---------------~~~~g--~~N~~F~~~~~~~s-~~-p~~  138 (178)
                      .+..+|||||||+|+.++.++.... .+++++|++..               +...|  ..|++|..++.... .+ +..
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~  320 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  320 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence            4678999999999999999998653 36899997632               23346  56899988543211 01 011


Q ss_pred             CCCcceEeeee
Q 035595          139 SGSQNYVILAN  149 (178)
Q Consensus       139 ~~s~~~vil~n  149 (178)
                      .++.|+|++-|
T Consensus       321 ~~~FDvIvvn~  331 (433)
T 1u2z_A          321 IPQCDVILVNN  331 (433)
T ss_dssp             GGGCSEEEECC
T ss_pred             cCCCCEEEEeC
Confidence            36789888643

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.48  E-value=0.00014  Score=64.06  Aligned_cols=65  Identities=12%  Similarity=0.011  Sum_probs=45.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc-------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD-------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s-------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..++||+||||+|-+++-.+..-..+++|+|.+       +....+|..+ |.+..+... .+  .+|+.+|++|-
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~-~~--~lpe~~Dvivs  155 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVE-TV--ELPEQVDAIVS  155 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTT-TC--CCSSCEEEEEC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeee-ee--cCCccccEEEe
Confidence            467899999999988776665544489999976       2334567655 888876542 11  34678898763

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.47  E-value=2.8e-05  Score=66.67  Aligned_cols=67  Identities=12%  Similarity=0.088  Sum_probs=48.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCC---CCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAV---SGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~---~~s~~~vil  147 (178)
                      +..+|||+|||+|+.++.++.....+++++|++        +.+..+|.. |+.|.++.... ..+.+   .++.|+||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~-~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE-EMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHH-HHHHHHhhCCCCCEEEE
Confidence            678999999999999999998732389999987        334456776 89999977631 11211   346787776

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.47  E-value=0.00023  Score=59.47  Aligned_cols=67  Identities=9%  Similarity=0.034  Sum_probs=47.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..+++++|+.       ++....|..+ ++|...+... .|  +++. |+|++.+
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~-D~v~~~~  264 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK-ES--YPEA-DAVLFCR  264 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTT-SC--CCCC-SEEEEES
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCcccc-CC--CCCC-CEEEEec
Confidence            456899999999999999999874 4578899963       2223335555 9999876642 21  3333 9998865

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.46  E-value=3.8e-05  Score=65.49  Aligned_cols=67  Identities=9%  Similarity=0.048  Sum_probs=48.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCC----CCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVS----GSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~----~s~~~v  145 (178)
                      .+..+|||+|||+|..+..|+... ..+++|+|++        +++...| .++.|.++... .++..++    ++.|.|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~-~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYR-EADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGG-GHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHH-HHHHHHHhcCCCCCCEE
Confidence            466899999999999999999875 4589999977        3344445 68999997764 3322121    467876


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      ++
T Consensus       103 l~  104 (301)
T 1m6y_A          103 LM  104 (301)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.46  E-value=0.0002  Score=60.53  Aligned_cols=62  Identities=6%  Similarity=-0.076  Sum_probs=44.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeec----cc-cc-----ccCCCcceEEEEc-ccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLV----DG-EY-----YNNGHENFSFLVD-GEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~----s~-k~-----~~~g~~N~~F~~~-~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+||+||||+|.....++.. . +++|+|+    +. ..     ...|..++.|..+ ... .++   +++.|+|+.
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~-~-~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~-~l~---~~~fD~V~s  154 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL-K-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVF-FIP---PERCDTLLC  154 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS-T-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTT-TSC---CCCCSEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc-C-CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccc-cCC---cCCCCEEEE
Confidence            4679999999999999999887 3 8999998    22 11     1123367999887 443 344   357898875

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.42  E-value=0.00011  Score=62.96  Aligned_cols=67  Identities=10%  Similarity=0.124  Sum_probs=49.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+|||+|..++.++.... .+++++|++        .++...|+ .+++|.++... .++. -.++.|+||.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~-~~~~-~~~~fD~Ii~  292 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT-QLSQ-YVDSVDFAIS  292 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG-GGGG-TCSCEEEEEE
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh-hCCc-ccCCcCEEEE
Confidence            4567999999999999999987653 279999977        34455677 57999997775 2331 1367787766

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.41  E-value=0.00013  Score=61.80  Aligned_cols=61  Identities=15%  Similarity=0.004  Sum_probs=45.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..+++ +... .+++|+|++        +.+..+|+ .|+.|..+....-+     +..|+||+
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~-~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----~~fD~Vi~  264 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNA-KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----VKGNRVIM  264 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTS-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----CCEEEEEE
T ss_pred             CCCEEEEccCccCHHHHh-ccCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----CCCcEEEE
Confidence            567999999999999999 8743 489999977        33445566 47999987765222     66777765

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.41  E-value=0.00025  Score=60.01  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=49.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..+++++|+.       ++....|. .+++|...+...+    +|.+.|+|++.|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~----~p~~~D~v~~~~  276 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET----IPDGADVYLIKH  276 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC----CCSSCSEEEEES
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC----CCCCceEEEhhh
Confidence            356899999999999999999874 4578888863       22333454 5699998776523    333799999876

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.39  E-value=0.00031  Score=59.74  Aligned_cols=66  Identities=5%  Similarity=-0.050  Sum_probs=45.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc-ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY-YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~-~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|.++..|+... ..++++.|...-. ......+++|.......+.|.    . |+|++.+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~----~-D~v~~~~  269 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPK----G-DAIFIKW  269 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCC----C-SEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCC----C-CEEEEec
Confidence            346799999999999999999864 4467888864111 111235799998776534442    2 9998865

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.36  E-value=0.00023  Score=60.82  Aligned_cols=67  Identities=9%  Similarity=-0.150  Sum_probs=50.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh-hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK-MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+| |+|.+++.++.... .+++++|++        +++...|..|+.|..+.....+|....++.|+||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~  247 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT  247 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence            467999999 99999999987642 489999986        33344477789999887753455445678998887

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.36  E-value=5e-05  Score=65.24  Aligned_cols=68  Identities=7%  Similarity=-0.075  Sum_probs=47.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-c-ceEEEEcccccCCCCCC---CCCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-E-NFSFLVDGEYYSNCPAV---SGSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~-N~~F~~~~~~~s~~p~~---~~s~~~v  145 (178)
                      .+..+|||+|||+|..++.++.....+++++|++        +.+..+|+ . |++|.++....-+ +.+   .+..|+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~-~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL-RTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHH-HHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH-HHHHhcCCCCCEE
Confidence            4667999999999999999998733489999987        23344577 5 8999987763111 111   2456766


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      |+
T Consensus       298 i~  299 (396)
T 3c0k_A          298 VM  299 (396)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.36  E-value=0.00019  Score=56.02  Aligned_cols=48  Identities=8%  Similarity=0.012  Sum_probs=39.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~  131 (178)
                      +..+|||+|||+|..+.-++.. ...++|+|++...   ...++.|.+++..
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~---~~~~v~~~~~D~~   72 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME---EIAGVRFIRCDIF   72 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC---CCTTCEEEECCTT
T ss_pred             CCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc---cCCCeEEEEcccc
Confidence            4679999999999999999887 4589999998542   4568899887654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.36  E-value=6.3e-05  Score=59.54  Aligned_cols=33  Identities=21%  Similarity=0.200  Sum_probs=28.1

Q ss_pred             CCceeEeeccCCchhHHHhHHh--h-hhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVV--I-KMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~--~-~~~i~AtD~s  112 (178)
                      +..+|||+|||+|..++.++..  . ..+++++|++
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis   86 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVD   86 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESC
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECC
Confidence            4578999999999999999876  2 3479999987

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.35  E-value=4.5e-05  Score=65.10  Aligned_cols=66  Identities=5%  Similarity=-0.111  Sum_probs=46.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc--eEEEEcccccCCCCCC---CCCcceEe
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN--FSFLVDGEYYSNCPAV---SGSQNYVI  146 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N--~~F~~~~~~~s~~p~~---~~s~~~vi  146 (178)
                      +..+|||+|||+|..++.++.... .++++|++        +.+..+|+.+  +.|.++....-+ +.+   .++.|+||
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l-~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI-QREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH-HHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHH-HHHHhcCCCceEEE
Confidence            457999999999999999998765 89999987        2333456664  888887653111 111   34678877


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      +
T Consensus       231 ~  231 (332)
T 2igt_A          231 T  231 (332)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.31  E-value=0.00045  Score=58.79  Aligned_cols=66  Identities=6%  Similarity=-0.036  Sum_probs=46.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ..+++..|...-.. .....+++|.......+.|.    . |+|++.+
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~----~-D~v~~~~  267 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPS----G-DTILMKW  267 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCC----C-SEEEEES
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCC----C-CEEEehH
Confidence            356899999999999999999864 44678888642111 11235799999776534442    2 9998865

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.29  E-value=0.00048  Score=57.53  Aligned_cols=64  Identities=14%  Similarity=0.110  Sum_probs=45.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecccccc--cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYY--NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~--~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..+..|+... ..+++++|.. ..-  .....+++|.......++    |+ .|+|++.+
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~----p~-~D~v~~~~  254 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENLSGSNNLTYVGGDMFTSI----PN-ADAVLLKY  254 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTCCCBTTEEEEECCTTTCC----CC-CSEEEEES
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCH-HHHhhcccCCCcEEEeccccCCC----CC-ccEEEeeh
Confidence            45799999999999999999764 4578999974 211  112356999887664333    33 89999866

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.27  E-value=0.00015  Score=58.71  Aligned_cols=34  Identities=9%  Similarity=-0.152  Sum_probs=28.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG  113 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~  113 (178)
                      ...+|||||||||..+..|+.....+++|+|++.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~   70 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGT   70 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCH
Confidence            3568999999999999999987434899999883

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.27  E-value=0.00027  Score=58.04  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=46.9

Q ss_pred             ceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeeeh
Q 035595           82 ALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      .+|||||||+|..+..|+... ..+++++|+.       ++....|. .+++|.......+    ++++.|+|++.|.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE----VPSNGDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC----CCSSCSEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC----CCCCCCEEEEchh
Confidence            899999999999999999874 4578999973       11112232 4689988766532    4567999998764

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.25  E-value=0.00026  Score=70.00  Aligned_cols=68  Identities=9%  Similarity=-0.057  Sum_probs=50.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh--hheeeeecccc----c----------ccCCCcceEEEEcccccCCCCCCCCCcc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK--MKILASLVDGE----Y----------YNNGHENFSFLVDGEYYSNCPAVSGSQN  143 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s~k----~----------~~~g~~N~~F~~~~~~~s~~p~~~~s~~  143 (178)
                      +..+|||||||+|..+..|+....  ..++++|++..    +          ...|..|+.|.++... .++. -.++.|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~-dLp~-~d~sFD  798 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL-EFDS-RLHDVD  798 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT-SCCT-TSCSCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH-hCCc-ccCCee
Confidence            568999999999999999998762  48999998711    1          1337789999998775 3433 257889


Q ss_pred             eEeeee
Q 035595          144 YVILAN  149 (178)
Q Consensus       144 ~vil~n  149 (178)
                      +|++..
T Consensus       799 lVV~~e  804 (950)
T 3htx_A          799 IGTCLE  804 (950)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            988754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.23  E-value=0.0003  Score=59.62  Aligned_cols=66  Identities=18%  Similarity=0.063  Sum_probs=47.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+||++|||+|..+++++...+.+++|+|.+        +.+..+|+.+ +.+...+.. .+++  .+..|.|||
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~-~~~~--~~~~D~Vi~  198 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR-DFPG--ENIADRILM  198 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT-TCCC--CSCEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHH-Hhcc--ccCCCEEEE
Confidence            4678999999999999999998765589999977        4445567766 777765553 2222  345566554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.22  E-value=0.0003  Score=59.17  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      +..+|||+|||+|..+..++... ..+++++|++.        +....+.. +.|...... .   .++++.|+||+.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~-~---~~~~~fD~Iv~~  268 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVF-S---EVKGRFDMIISN  268 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTT-T---TCCSCEEEEEEC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEcccc-c---cccCCeeEEEEC
Confidence            45689999999999999999875 34899999872        22233433 456554433 2   236788988873

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.19  E-value=0.00087  Score=56.07  Aligned_cols=65  Identities=17%  Similarity=0.114  Sum_probs=45.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..+..|+... ..++++.|.+.-.. .....+++|.......+    ++ +.|+|++.+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~----~~-~~D~v~~~~  259 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKS----IP-SADAVLLKW  259 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTC----CC-CCSEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCC----CC-CceEEEEcc
Confidence            45799999999999999999875 34677888751111 11235699988766433    33 379999865

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.18  E-value=0.00029  Score=60.91  Aligned_cols=69  Identities=9%  Similarity=-0.069  Sum_probs=47.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc--ceEEEEcccccCCCCCC--CCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE--NFSFLVDGEYYSNCPAV--SGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~--N~~F~~~~~~~s~~p~~--~~s~~~vi  146 (178)
                      .+..+||++|||+|..++.++.....+++++|++        +.+..+|+.  |++|.++....-++...  .+..|+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            4567999999999999999998433389999987        334456776  89999977632121111  23567766


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      +
T Consensus       291 ~  291 (385)
T 2b78_A          291 I  291 (385)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.18  E-value=0.00013  Score=65.65  Aligned_cols=67  Identities=16%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|+.++.|+...  ...++|+|++        +++...|+.|+.|...... .+++..+++.|.|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~-~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGR-VFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCST-THHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHH-HhhhhccccCCEEEE
Confidence            67899999999999999999864  3589999987        3334458888988886553 222223567887765

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.18  E-value=0.00045  Score=58.73  Aligned_cols=72  Identities=14%  Similarity=0.145  Sum_probs=51.0

Q ss_pred             ccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCC--CCc
Q 035595           75 LSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVS--GSQ  142 (178)
Q Consensus        75 L~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~--~s~  142 (178)
                      ++...+..+||++|||+|..++.|+...  ...++|+|++        +++...|+.|+.+..+... .+++..+  ++.
T Consensus        97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~-~~~~~~~~~~~f  175 (309)
T 2b9e_A           97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFL-AVSPSDPRYHEV  175 (309)
T ss_dssp             HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG-GSCTTCGGGTTE
T ss_pred             HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChH-hcCccccccCCC
Confidence            3444567899999999999999999864  3589999987        3344568889999887664 2333221  356


Q ss_pred             ceEee
Q 035595          143 NYVIL  147 (178)
Q Consensus       143 ~~vil  147 (178)
                      |.|++
T Consensus       176 D~Vl~  180 (309)
T 2b9e_A          176 HYILL  180 (309)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            66554

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.17  E-value=0.00015  Score=58.40  Aligned_cols=33  Identities=6%  Similarity=-0.299  Sum_probs=24.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +..+|||||||+|.+.+-++......++++|++
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s  103 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFL  103 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSC
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCC
Confidence            567999999999996544433233489999988

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.10  E-value=0.00051  Score=62.43  Aligned_cols=66  Identities=9%  Similarity=-0.046  Sum_probs=47.1

Q ss_pred             CCceeEeeccC------CchhHHHhHHhh--hhheeeeecccccccCCCcceEEEEcccccCCC--CCC---CCCcceEe
Q 035595           80 EAALDAKGNFG------NGSLIADFSVVI--KMKILASLVDGEYYNNGHENFSFLVDGEYYSNC--PAV---SGSQNYVI  146 (178)
Q Consensus        80 ~~~~vLEvGCG------~Gnta~pll~~~--~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~--p~~---~~s~~~vi  146 (178)
                      .+.+|||||||      +|...+.++...  ..+++++|++.+.. ....|++|.++... .++  ..+   .++.|+||
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-~~~~rI~fv~GDa~-dlpf~~~l~~~d~sFDlVi  293 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-VDELRIRTIQGDQN-DAEFLDRIARRYGPFDIVI  293 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-GCBTTEEEEECCTT-CHHHHHHHHHHHCCEEEEE
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-hcCCCcEEEEeccc-ccchhhhhhcccCCccEEE
Confidence            46899999999      777777887652  45899999997653 34578999997764 221  111   47888887


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      .
T Consensus       294 s  294 (419)
T 3sso_A          294 D  294 (419)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.09  E-value=0.00021  Score=62.75  Aligned_cols=65  Identities=12%  Similarity=-0.081  Sum_probs=43.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+||++|||||..++.++.... .++|+|++.        .+..+|+.+ .|.+++.. ...+.+++..|+||+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~-~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRV-DIRHGEAL-PTLRGLEGPFHHVLL  286 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHH-HHHHTCCCCEEEEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHH-HHHHHhcCCCCEEEE
Confidence            478999999999999999998754 499999882        233345543 46554442 122233445777765

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.09  E-value=0.00026  Score=59.09  Aligned_cols=68  Identities=12%  Similarity=0.041  Sum_probs=46.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc-------c-----cCCCcceEEEEcccccCCCCC-CCCCcce
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY-------Y-----NNGHENFSFLVDGEYYSNCPA-VSGSQNY  144 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~-------~-----~~g~~N~~F~~~~~~~s~~p~-~~~s~~~  144 (178)
                      ..+.+|||||||+|.++..++... ..+++++|++...       .     .....++.|..+... ..+.. -+++.|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGL-AFVRQTPDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH-HHHHSSCTTCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHH-HHHHhccCCceeE
Confidence            456899999999999999999763 2488999987211       1     112356888887653 12222 2567888


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      ||+
T Consensus       173 Ii~  175 (304)
T 3bwc_A          173 VII  175 (304)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.08  E-value=0.00037  Score=60.69  Aligned_cols=65  Identities=12%  Similarity=0.001  Sum_probs=46.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHh-hhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVV-IKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .++.+||+||||.|=.++|++.. ..-.++|+|++        ..+...|+. ++|...+..   .+.+++..|++++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~---~~~p~~~~DvaL~  204 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLL---EDRLDEPADVTLL  204 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTT---TSCCCSCCSEEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeec---ccCCCCCcchHHH
Confidence            45789999999999999999886 35589999988        333444555 566554433   2335778888754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.08  E-value=0.00048  Score=58.98  Aligned_cols=33  Identities=12%  Similarity=-0.036  Sum_probs=28.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +..+||++|||||..+..|+..-..+++|+|++
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs  117 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVG  117 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSS
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECC
Confidence            456999999999999999988743489999988

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.08  E-value=0.00045  Score=55.66  Aligned_cols=38  Identities=5%  Similarity=-0.118  Sum_probs=30.2

Q ss_pred             CCceeEeeccCCc-hhHHHhHHhhhhheeeeeccccccc
Q 035595           80 EAALDAKGNFGNG-SLIADFSVVIKMKILASLVDGEYYN  117 (178)
Q Consensus        80 ~~~~vLEvGCG~G-nta~pll~~~~~~i~AtD~s~k~~~  117 (178)
                      +..+|||||||.| ..|.-|.......++|||++.++.+
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            3579999999999 5777777656667999999966544

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.07  E-value=0.001  Score=56.13  Aligned_cols=65  Identities=11%  Similarity=-0.035  Sum_probs=44.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc-ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY-YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~-~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+|||||||+|..+..|+... ...++++|+..-. ......++.|.......+    +|. .|+|++.+
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~----~~~-~D~v~~~~  275 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFAS----VPQ-GDAMILKA  275 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTC----CCC-EEEEEEES
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccC----CCC-CCEEEEec
Confidence            46799999999999999999875 3466777863111 111235799988766433    333 79999865

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.07  E-value=0.00019  Score=59.11  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=44.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc-------ccC--C---------CcceEEEEcccccCCCCCCCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY-------YNN--G---------HENFSFLVDGEYYSNCPAVSG  140 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~-------~~~--g---------~~N~~F~~~~~~~s~~p~~~~  140 (178)
                      ..+.+||+||||+|.++..++.....+++++|++...       ...  +         ..++.|..+....-++.  ++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~~  151 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--NR  151 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--CC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc--cC
Confidence            4567999999999999999998732489999977211       111  2         35688887665311111  46


Q ss_pred             CcceEee
Q 035595          141 SQNYVIL  147 (178)
Q Consensus       141 s~~~vil  147 (178)
                      +.|+||+
T Consensus       152 ~fD~Ii~  158 (281)
T 1mjf_A          152 GFDVIIA  158 (281)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEE
Confidence            6787775

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.06  E-value=0.00012  Score=66.16  Aligned_cols=71  Identities=10%  Similarity=0.022  Sum_probs=50.5

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceE
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      +...+..+|||+|||+|..++-|+....  ..++|+|++        +.+...|+.|+.+...... .+++..+++.|+|
T Consensus       101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~-~l~~~~~~~FD~I  179 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPA-ELVPHFSGFFDRI  179 (456)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHH-HHHHHHTTCEEEE
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHH-HhhhhccccCCEE
Confidence            3445678999999999999999998642  479999987        3445568889988876553 1222235677776


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      ++
T Consensus       180 l~  181 (456)
T 3m4x_A          180 VV  181 (456)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.05  E-value=0.00024  Score=58.69  Aligned_cols=69  Identities=13%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc--------cccC----CCcceEEEEcccccCCCCCCCCCcce
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE--------YYNN----GHENFSFLVDGEYYSNCPAVSGSQNY  144 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k--------~~~~----g~~N~~F~~~~~~~s~~p~~~~s~~~  144 (178)
                      ...+.+||+||||+|.++..++... ..+++++|++..        ....    ...+++|..+....-++ ..+++.|+
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~  154 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE-NVTNTYDV  154 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-HCCSCEEE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHH-hCCCCceE
Confidence            3456899999999999999999763 348899997721        1111    13568888766531111 12567888


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      ||+
T Consensus       155 Ii~  157 (283)
T 2i7c_A          155 IIV  157 (283)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.01  E-value=0.00025  Score=66.56  Aligned_cols=67  Identities=6%  Similarity=-0.140  Sum_probs=47.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc--ceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE--NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~--N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+||++|||||..++.++.....+++++|++        +.+..+|+.  +++|.+++...-++ ...+..|+||+
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~-~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLR-EANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHH-HCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-hcCCCccEEEE
Confidence            567999999999999999987654479999987        344556776  79999877632111 12356676665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.00  E-value=0.0002  Score=60.24  Aligned_cols=69  Identities=14%  Similarity=0.079  Sum_probs=46.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------ccc--cCC---CcceEEEEcccccCCCCCCCCCcce
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYY--NNG---HENFSFLVDGEYYSNCPAVSGSQNY  144 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~--~~g---~~N~~F~~~~~~~s~~p~~~~s~~~  144 (178)
                      ..+.+|||||||+|.++..++... ..+++++|++.        ...  +.|   ..+++|..++...-++ ..+++.|+
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~  154 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE-RTEERYDV  154 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH-HCCCCEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH-hcCCCccE
Confidence            456899999999999999999863 34789999772        111  122   3578888876531111 12567888


Q ss_pred             Eeee
Q 035595          145 VILA  148 (178)
Q Consensus       145 vil~  148 (178)
                      ||+-
T Consensus       155 Ii~d  158 (314)
T 1uir_A          155 VIID  158 (314)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            8763

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.00  E-value=0.00029  Score=60.50  Aligned_cols=68  Identities=13%  Similarity=0.098  Sum_probs=46.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc--------ccc--CCC--cceEEEEcccccCCCCCC-CCCcce
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE--------YYN--NGH--ENFSFLVDGEYYSNCPAV-SGSQNY  144 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k--------~~~--~g~--~N~~F~~~~~~~s~~p~~-~~s~~~  144 (178)
                      ..+.+|||||||+|.++..|+... ..+++++|++..        ...  .|.  .+++|..+....-+ +.+ .++.|+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l-~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFL-KNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHH-HTSCTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHH-HhccCCCccE
Confidence            456799999999999999999863 248999998721        111  122  46888887653111 122 467888


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      ||+
T Consensus       198 Ii~  200 (334)
T 1xj5_A          198 VIV  200 (334)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.99  E-value=0.00021  Score=60.61  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=45.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------cccc--CC--CcceEEEEcccccCCCCCCCCCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYN--NG--HENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~--~g--~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      ..+.+|||||||+|.++..++... ..+++++|++.        ....  .+  ..+++|..++....++ ..+++.|+|
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fDvI  193 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE-NVTNTYDVI  193 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-HCCSCEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh-hcCCCceEE
Confidence            356799999999999999999863 35899999872        1111  12  3568888876531111 124678887


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      |+
T Consensus       194 i~  195 (321)
T 2pt6_A          194 IV  195 (321)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.96  E-value=0.00036  Score=58.17  Aligned_cols=68  Identities=12%  Similarity=0.031  Sum_probs=45.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc--------ccc--CC--CcceEEEEcccccCCCCCCCCCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE--------YYN--NG--HENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k--------~~~--~g--~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      ..+.+||+||||+|.++..++... ..+++++|++..        ...  .+  ..++++..++...-++ ..+++.|+|
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~I  167 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-KFKNEFDVI  167 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-GCSSCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-hCCCCceEE
Confidence            345799999999999999999863 348999998721        111  12  3578888876531121 124677887


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      |+
T Consensus       168 i~  169 (296)
T 1inl_A          168 II  169 (296)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.92  E-value=0.00056  Score=62.55  Aligned_cols=70  Identities=9%  Similarity=0.026  Sum_probs=47.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhh-heeeeecccc---------------cccCCC--cceEEEEcccccCCCC-CCC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKM-KILASLVDGE---------------YYNNGH--ENFSFLVDGEYYSNCP-AVS  139 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~-~i~AtD~s~k---------------~~~~g~--~N~~F~~~~~~~s~~p-~~~  139 (178)
                      .+..+||+||||+|+.++.++..... +++++|++..               ....|.  .+++|.++... .+|- ..-
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~-~lp~~d~~  250 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL-SEEWRERI  250 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT-SHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc-CCcccccc
Confidence            46789999999999999999875433 4999998721               122344  68999998764 2221 001


Q ss_pred             CCcceEeeee
Q 035595          140 GSQNYVILAN  149 (178)
Q Consensus       140 ~s~~~vil~n  149 (178)
                      ++.|+|++-|
T Consensus       251 ~~aDVVf~Nn  260 (438)
T 3uwp_A          251 ANTSVIFVNN  260 (438)
T ss_dssp             HTCSEEEECC
T ss_pred             CCccEEEEcc
Confidence            4678877544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.90  E-value=0.0013  Score=57.35  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh---------------------------------------hheeeeecc-------
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK---------------------------------------MKILASLVD-------  112 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~---------------------------------------~~i~AtD~s-------  112 (178)
                      .+...||+.|||+|..++..+....                                       ..++++|++       
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            3567899999999999988876431                                       358999977       


Q ss_pred             -cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595          113 -GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus       113 -~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                       ..+..+|+. ++.|.+.... .+++  +++.|+||.
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~-~l~~--~~~~D~Iv~  307 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDAT-QFKS--EDEFGFIIT  307 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGG-GCCC--SCBSCEEEE
T ss_pred             HHHHHHcCCCCceEEEECChh-hcCc--CCCCcEEEE
Confidence             344456775 6999998775 3332  346676654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.89  E-value=0.0006  Score=59.12  Aligned_cols=65  Identities=12%  Similarity=0.027  Sum_probs=44.0

Q ss_pred             ceeEeeccCCchhHHHhHHh-hhhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           82 ALDAKGNFGNGSLIADFSVV-IKMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      .+||+||||+|.++.-|+.. ...+++++|++.        ........+++|..+....-+ ..+ .++.|+||+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l-~~~~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA-ESFTPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH-HTCCTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH-hhccCCCCCEEEE
Confidence            48999999999999999984 345788999772        222223457888887653111 122 467787775

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.87  E-value=0.00035  Score=58.83  Aligned_cols=69  Identities=9%  Similarity=0.052  Sum_probs=45.9

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc--------ccc--CC--CcceEEEEcccccCCCCCCCCCcce
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE--------YYN--NG--HENFSFLVDGEYYSNCPAVSGSQNY  144 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k--------~~~--~g--~~N~~F~~~~~~~s~~p~~~~s~~~  144 (178)
                      ...+.+|||||||+|.++..++... ..+++++|++..        ...  .+  ..++++..+....-++ ..+++.|+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~-~~~~~fD~  171 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK-QNQDAFDV  171 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH-TCSSCEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh-hCCCCceE
Confidence            3456899999999999999999864 248899997721        111  12  3568888766531111 13567888


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      ||+
T Consensus       172 Ii~  174 (304)
T 2o07_A          172 IIT  174 (304)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.85  E-value=0.0014  Score=54.12  Aligned_cols=63  Identities=10%  Similarity=-0.074  Sum_probs=42.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------ccC------CCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YNN------GHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~~------g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ..+.+|||||||+|.++..++... .+++++|++.+.      +-.      ...++.+..+....-    + ++.|++|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~----~-~~fD~Ii  144 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD----I-KKYDLIF  144 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC----C-CCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH----H-hhCCEEE
Confidence            456799999999999999998874 689999977211      111      123577776554311    1 6678777


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      +
T Consensus       145 ~  145 (262)
T 2cmg_A          145 C  145 (262)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.83  E-value=0.0012  Score=55.42  Aligned_cols=65  Identities=11%  Similarity=0.089  Sum_probs=43.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh------hheeeeeccccc--------ccCCCcceEEEEcccccCCCCCCCCCcceE
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK------MKILASLVDGEY--------YNNGHENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~------~~i~AtD~s~k~--------~~~g~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      +..+|||+|||+|+.+..++....      ..++++|++..+        ...|. ++.+..+......   ..+..|+|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---~~~~fD~I  205 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---LVDPVDVV  205 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---CCCCEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---ccCCccEE
Confidence            567999999999999999988763      578999987322        12344 5777776654221   23556654


Q ss_pred             eeee
Q 035595          146 ILAN  149 (178)
Q Consensus       146 il~n  149 (178)
                      | .|
T Consensus       206 i-~N  208 (344)
T 2f8l_A          206 I-SD  208 (344)
T ss_dssp             E-EE
T ss_pred             E-EC
Confidence            4 44

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.77  E-value=0.00075  Score=58.77  Aligned_cols=70  Identities=9%  Similarity=-0.030  Sum_probs=46.5

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhhh-hheeeeecccc--------cccCCCcceEEEEcccccCCCCCC-CCCcceE
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVIK-MKILASLVDGE--------YYNNGHENFSFLVDGEYYSNCPAV-SGSQNYV  145 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s~k--------~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~v  145 (178)
                      +...+..+|||+|||+|..+..|+.... ..++|+|++.+        ....|. ++.|...... .+++.+ .++.|+|
T Consensus       242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~-~~~~~~~~~~fD~V  319 (429)
T 1sqg_A          242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGR-YPSQWCGEQQFDRI  319 (429)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTT-CTHHHHTTCCEEEE
T ss_pred             cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchh-hchhhcccCCCCEE
Confidence            3445678999999999999999998652 48999998732        233355 3677665443 222223 2567877


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      ++
T Consensus       320 l~  321 (429)
T 1sqg_A          320 LL  321 (429)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.74  E-value=0.00031  Score=62.90  Aligned_cols=65  Identities=6%  Similarity=-0.127  Sum_probs=46.1

Q ss_pred             CceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccC--CCcceEEEEcccccCCCCCC-CCCcceEee
Q 035595           81 AALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNN--GHENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~--g~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      ..+||++|||+|..++.|+.... +++++|++        ..+...  |..|++|.+++...-++ .+ .++.|+|++
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~-~~~~~~fDvV~l  169 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLP-LIKTFHPDYIYV  169 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHH-HHHHHCCSEEEE
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhh-hccCCCceEEEE
Confidence            57999999999999999888764 89999987        222222  77889999987652221 11 235676665

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.73  E-value=0.00029  Score=63.81  Aligned_cols=70  Identities=13%  Similarity=0.010  Sum_probs=48.6

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceE
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      +...+..+|||+|||+|..++.|+....  ..++|+|++        +++...|+. +.|..+... .+++..+++.|+|
T Consensus        97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~-~l~~~~~~~FD~I  174 (464)
T 3m6w_A           97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPR-ALAEAFGTYFHRV  174 (464)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHH-HHHHHHCSCEEEE
T ss_pred             cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHH-HhhhhccccCCEE
Confidence            3445678999999999999999998642  479999987        333445777 888776542 1222235677876


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      ++
T Consensus       175 l~  176 (464)
T 3m6w_A          175 LL  176 (464)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=96.73  E-value=0.0031  Score=53.34  Aligned_cols=66  Identities=17%  Similarity=0.128  Sum_probs=44.3

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeec-------ccccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLV-------DGEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~-------s~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+||+||||+|..+..|+... ..+.+..|.       ++.....+..+++|...+.... |  + +.-|+++|.+
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~-~--~-~~~D~~~~~~  252 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD-P--L-PEADLYILAR  252 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS-C--C-CCCSEEEEES
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccC-C--C-CCceEEEeee
Confidence            45689999999999999999875 333444442       2344556678899999776422 1  2 2359999876

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.65  E-value=0.00095  Score=55.06  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=45.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc--------cc--cCC--CcceEEEEcccccCCCCCCCCCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE--------YY--NNG--HENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k--------~~--~~g--~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      ..+.+||+||||+|.++.-++... ..+++++|++..        ..  ..+  ..++.+..++...-++ ..+++.|++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~fD~I  152 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA-KSENQYDVI  152 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH-TCCSCEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-hCCCCeeEE
Confidence            356899999999999999999873 348999997711        10  012  3468888876531111 124677877


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      |+
T Consensus       153 i~  154 (275)
T 1iy9_A          153 MV  154 (275)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.65  E-value=0.0031  Score=55.27  Aligned_cols=65  Identities=11%  Similarity=0.092  Sum_probs=46.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh---------------------------------------hheeeeecc--------
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK---------------------------------------MKILASLVD--------  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~---------------------------------------~~i~AtD~s--------  112 (178)
                      +...||+.+||+|..++..+....                                       .+++++|++        
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            467899999999999888776432                                       248999977        


Q ss_pred             cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595          113 GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus       113 ~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..+...|+.+ +.|.+.... .+++  +++.|+||.
T Consensus       281 ~Na~~~gl~~~I~~~~~D~~-~~~~--~~~fD~Iv~  313 (393)
T 3k0b_A          281 QNAVEAGLGDLITFRQLQVA-DFQT--EDEYGVVVA  313 (393)
T ss_dssp             HHHHHTTCTTCSEEEECCGG-GCCC--CCCSCEEEE
T ss_pred             HHHHHcCCCCceEEEECChH-hCCC--CCCCCEEEE
Confidence            4445667764 899987775 3332  346776553

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.64  E-value=0.00056  Score=58.17  Aligned_cols=68  Identities=10%  Similarity=0.055  Sum_probs=44.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc--------cccc--CC--CcceEEEEcccccCCCCCCCCCcceE
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG--------EYYN--NG--HENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~--------k~~~--~g--~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      ..+.+|||||||+|.++..++... ..+++++|++.        ....  .|  ..++.|..+....-++ ..+++.|+|
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~I  185 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK-NHKNEFDVI  185 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH-HCTTCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH-hcCCCceEE
Confidence            356799999999999999999863 34899999772        1111  12  2468887765531111 124567877


Q ss_pred             ee
Q 035595          146 IL  147 (178)
Q Consensus       146 il  147 (178)
                      |+
T Consensus       186 i~  187 (314)
T 2b2c_A          186 IT  187 (314)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=96.55  E-value=0.0013  Score=55.14  Aligned_cols=64  Identities=11%  Similarity=-0.007  Sum_probs=45.1

Q ss_pred             ceeEeeccCCchhHHHhHHhhhhheeeeeccccc---------------ccCC-C-cceEEEEcccccCCCCCCCCCcce
Q 035595           82 ALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---------------YNNG-H-ENFSFLVDGEYYSNCPAVSGSQNY  144 (178)
Q Consensus        82 ~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---------------~~~g-~-~N~~F~~~~~~~s~~p~~~~s~~~  144 (178)
                      .+||++|||+|..++.++.... +++++|++...               ..++ . .+++|..++...-+ +.++++.|+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L-~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL-TDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS-TTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH-HhCcccCCE
Confidence            7999999999999999998754 79999987421               1122 3 57899987764212 234346787


Q ss_pred             Eee
Q 035595          145 VIL  147 (178)
Q Consensus       145 vil  147 (178)
                      |++
T Consensus       168 V~l  170 (258)
T 2oyr_A          168 VYL  170 (258)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.51  E-value=0.0016  Score=55.32  Aligned_cols=69  Identities=12%  Similarity=0.039  Sum_probs=43.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccc----cccCCCcceE--EEEcccccCCCCCCCCCcceEeeeeh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE----YYNNGHENFS--FLVDGEYYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k----~~~~g~~N~~--F~~~~~~~s~~p~~~~s~~~vil~nl  150 (178)
                      .+..+|||||||+|..+..|+... ..++++|.+..    +...+..+..  |..+... .+| .-.++.|+|+..+.
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~l~-~~~~~fD~I~~~~v  180 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAG-VRHLGFEPSSGVAAKAREKGIRVRTDFFEKATAD-DVR-RTEGPANVIYAANT  180 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTT-CEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHH-HHH-HHHCCEEEEEEESC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC-CcEEEECCCHHHHHHHHHcCCCcceeeechhhHh-hcc-cCCCCEEEEEECCh
Confidence            467899999999999999998865 38999998832    2222333221  1111111 111 11478899988763

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=96.48  E-value=0.0049  Score=53.99  Aligned_cols=65  Identities=11%  Similarity=0.012  Sum_probs=46.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh---------------------------------------hheeeeecc--------
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK---------------------------------------MKILASLVD--------  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~---------------------------------------~~i~AtD~s--------  112 (178)
                      +...||+.+||+|..++..+....                                       ..++++|++        
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            567899999999999988776432                                       248999977        


Q ss_pred             cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595          113 GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus       113 ~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..+...|+.+ +.|.+.... .+++  +++.|+||.
T Consensus       274 ~Na~~~gl~~~I~~~~~D~~-~l~~--~~~fD~Iv~  306 (384)
T 3ldg_A          274 KNAREVGLEDVVKLKQMRLQ-DFKT--NKINGVLIS  306 (384)
T ss_dssp             HHHHHTTCTTTEEEEECCGG-GCCC--CCCSCEEEE
T ss_pred             HHHHHcCCCCceEEEECChH-HCCc--cCCcCEEEE
Confidence            4445667775 999987775 3332  346776553

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.40  E-value=0.00099  Score=58.19  Aligned_cols=33  Identities=6%  Similarity=0.009  Sum_probs=28.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      +..+|||+|||+|..++.++... ..+++|+|++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~   80 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDIS   80 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESC
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECC
Confidence            56799999999999999999873 2469999987

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=96.07  E-value=0.0059  Score=50.14  Aligned_cols=51  Identities=8%  Similarity=-0.106  Sum_probs=35.2

Q ss_pred             CCceeEeeccCC---chhHHHhHHhh-hhheeeeeccc------ccccCCCcceEEEEccc
Q 035595           80 EAALDAKGNFGN---GSLIADFSVVI-KMKILASLVDG------EYYNNGHENFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~---Gnta~pll~~~-~~~i~AtD~s~------k~~~~g~~N~~F~~~~~  130 (178)
                      +..+||+||||+   |++...+.... ..+++++|.+.      +.......++.|..+..
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~  137 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADV  137 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeC
Confidence            457999999999   99876655432 35899999871      11112335789998765

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.95  E-value=0.0091  Score=52.15  Aligned_cols=67  Identities=10%  Similarity=0.123  Sum_probs=44.2

Q ss_pred             CCCcccccc------cccccCCCceeEeeccCCchhHHHhHHhh--------------hhheeeeeccccc--------c
Q 035595           65 SGKFFKFTA------ELSNCHEAALDAKGNFGNGSLIADFSVVI--------------KMKILASLVDGEY--------Y  116 (178)
Q Consensus        65 ~~~FFKdRP------EL~~~~~~~~vLEvGCG~Gnta~pll~~~--------------~~~i~AtD~s~k~--------~  116 (178)
                      .+-||-.|+      ++....+..+|||.|||+|+..+.++...              ...++++|++...        .
T Consensus       150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~  229 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  229 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence            356777662      22333456799999999999999888753              3578999977322        2


Q ss_pred             cCCCc--ceEEEEcccc
Q 035595          117 NNGHE--NFSFLVDGEY  131 (178)
Q Consensus       117 ~~g~~--N~~F~~~~~~  131 (178)
                      -.|..  ++.+..+...
T Consensus       230 l~g~~~~~~~i~~gD~l  246 (445)
T 2okc_A          230 LHGIGTDRSPIVCEDSL  246 (445)
T ss_dssp             HTTCCSSCCSEEECCTT
T ss_pred             HhCCCcCCCCEeeCCCC
Confidence            23443  5667766554

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=95.93  E-value=0.0076  Score=51.27  Aligned_cols=59  Identities=8%  Similarity=-0.046  Sum_probs=40.1

Q ss_pred             CCCceeEeecc------CCchhHHHhHHhh--hhheeeeecccccccCCCcceEE-EEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNF------GNGSLIADFSVVI--KMKILASLVDGEYYNNGHENFSF-LVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGC------G~Gnta~pll~~~--~~~i~AtD~s~k~~~~g~~N~~F-~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .+..+|||+||      |+|+  .-++...  ..+++|+|++..     +.+++| .++... .++  ++++.|+|+.
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-----v~~v~~~i~gD~~-~~~--~~~~fD~Vvs  129 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-----VSDADSTLIGDCA-TVH--TANKWDLIIS  129 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-----BCSSSEEEESCGG-GCC--CSSCEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-----CCCCEEEEECccc-cCC--ccCcccEEEE
Confidence            45679999999      4476  3333332  247999999966     467888 776654 332  2478998874

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=95.82  E-value=0.0034  Score=55.59  Aligned_cols=67  Identities=13%  Similarity=0.011  Sum_probs=46.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh--hheeeeecc--------cccccCCCcc--eEEEEcccccCCCC-CCCCCcceEe
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK--MKILASLVD--------GEYYNNGHEN--FSFLVDGEYYSNCP-AVSGSQNYVI  146 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~--~~i~AtD~s--------~k~~~~g~~N--~~F~~~~~~~s~~p-~~~~s~~~vi  146 (178)
                      +..+|||++||+|..+++++....  .+++|+|++        +.+..+|+.+  +.|..++...-+ . .+.+.-|+|+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l-~~~~~~~fD~V~  130 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFL-RKEWGFGFDYVD  130 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHH-HSCCSSCEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHH-HHhhCCCCcEEE
Confidence            457999999999999999998531  489999977        3445567776  888877653111 1 1244567666


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      |
T Consensus       131 l  131 (392)
T 3axs_A          131 L  131 (392)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.52  E-value=0.0057  Score=50.67  Aligned_cols=35  Identities=9%  Similarity=-0.019  Sum_probs=29.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE  114 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k  114 (178)
                      .+.+.||+++||+|+|++..+.... .++++|++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~  268 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPR  268 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHH
Confidence            4678999999999999999888765 8999997743

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.39  E-value=0.029  Score=52.72  Aligned_cols=68  Identities=16%  Similarity=0.142  Sum_probs=46.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-------------------------------------------hhheeeeecc----
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-------------------------------------------KMKILASLVD----  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-------------------------------------------~~~i~AtD~s----  112 (178)
                      +...||+.+||+|..++..+...                                           ...++++|++    
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            56789999999999988876532                                           1368999977    


Q ss_pred             ----cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595          113 ----GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus       113 ----~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                          ..+..+|+.+ +.|.+.....-.+|.-.++.|+||.
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~  309 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLS  309 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEE
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEe
Confidence                4455678877 8999987752222322336676543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=94.03  E-value=0.029  Score=51.06  Aligned_cols=48  Identities=8%  Similarity=0.158  Sum_probs=33.2

Q ss_pred             CCCcccccc------cccccCCCceeEeeccCCchhHHHhHHhh-------------------hhheeeeecc
Q 035595           65 SGKFFKFTA------ELSNCHEAALDAKGNFGNGSLIADFSVVI-------------------KMKILASLVD  112 (178)
Q Consensus        65 ~~~FFKdRP------EL~~~~~~~~vLEvGCG~Gnta~pll~~~-------------------~~~i~AtD~s  112 (178)
                      .+-||-.|+      +++...+..+||+.+||+|+..+.++...                   ...++++|++
T Consensus       148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid  220 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV  220 (541)
T ss_dssp             --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC
T ss_pred             CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCC
Confidence            356777662      22333456799999999999998887653                   2368999977

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=93.81  E-value=0.065  Score=50.70  Aligned_cols=93  Identities=12%  Similarity=0.084  Sum_probs=53.2

Q ss_pred             ccccchHHHHHHHhhcCCCCccccc-ccccccCCCceeEeeccCCchhHHHhHHhhhh-----heeeeecc-------cc
Q 035595           48 EAEKDSDAWKRFHSRHSSGKFFKFT-AELSNCHEAALDAKGNFGNGSLIADFSVVIKM-----KILASLVD-------GE  114 (178)
Q Consensus        48 ~~~~~~~~Wd~Fy~rh~~~~FFKdR-PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~-----~i~AtD~s-------~k  114 (178)
                      .++.|.-+-+.+-+.=  .+..+|| ++-.......+||.||||+|=++.--+...+.     +++|+..+       +.
T Consensus       326 vFEkD~vKy~~Ye~AI--~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~  403 (637)
T 4gqb_A          326 VFEKDPIKYSQYQQAI--YKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLEN  403 (637)
T ss_dssp             HHTTCHHHHHHHHHHH--HHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHH
T ss_pred             hhcCChhhHHHHHHHH--HHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHH
Confidence            4455555555544222  2344555 33323334578999999999886666654432     67998866       22


Q ss_pred             cccCCCcc-eEEEEccc-ccCCCCCCCCCcceEe
Q 035595          115 YYNNGHEN-FSFLVDGE-YYSNCPAVSGSQNYVI  146 (178)
Q Consensus       115 ~~~~g~~N-~~F~~~~~-~~s~~p~~~~s~~~vi  146 (178)
                      ...+|..+ |++..+.. ...    +|+-||++|
T Consensus       404 v~~N~~~dkVtVI~gd~eev~----LPEKVDIIV  433 (637)
T 4gqb_A          404 WQFEEWGSQVTVVSSDMREWV----APEKADIIV  433 (637)
T ss_dssp             HHHHTTGGGEEEEESCTTTCC----CSSCEEEEE
T ss_pred             HHhccCCCeEEEEeCcceecc----CCcccCEEE
Confidence            33445444 77776544 222    346677776

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=93.74  E-value=0.08  Score=48.55  Aligned_cols=82  Identities=12%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             CCCcccccc------cccc----cCCCceeEeeccCCchhHHHhHHhh----hhheeeeeccccc--------ccCCC--
Q 035595           65 SGKFFKFTA------ELSN----CHEAALDAKGNFGNGSLIADFSVVI----KMKILASLVDGEY--------YNNGH--  120 (178)
Q Consensus        65 ~~~FFKdRP------EL~~----~~~~~~vLEvGCG~Gnta~pll~~~----~~~i~AtD~s~k~--------~~~g~--  120 (178)
                      .+-||-.|+      +++.    ..+..+||+.+||+|+..+.++...    ...+++.|++...        .-.|+  
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  275 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI  275 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence            477888872      2222    2356799999999999999888763    3478898877322        22355  


Q ss_pred             cceEEEEcccccCC-CCCCCCCcceEe
Q 035595          121 ENFSFLVDGEYYSN-CPAVSGSQNYVI  146 (178)
Q Consensus       121 ~N~~F~~~~~~~s~-~p~~~~s~~~vi  146 (178)
                      .++.+..+.....- |..-.+..|+||
T Consensus       276 ~~~~I~~gDtL~~d~p~~~~~~fD~Iv  302 (542)
T 3lkd_A          276 ENQFLHNADTLDEDWPTQEPTNFDGVL  302 (542)
T ss_dssp             GGEEEEESCTTTSCSCCSSCCCBSEEE
T ss_pred             CccceEecceecccccccccccccEEE
Confidence            46777776664221 222245667655

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=92.80  E-value=0.1  Score=44.67  Aligned_cols=78  Identities=6%  Similarity=-0.034  Sum_probs=49.0

Q ss_pred             cchHHHHHHHhhcCCCCccccc----------ccccc------------------cCCCceeEeeccCC---chhHHHhH
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFT----------AELSN------------------CHEAALDAKGNFGN---GSLIADFS   99 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdR----------PEL~~------------------~~~~~~vLEvGCG~---Gnta~pll   99 (178)
                      ..++-||-|-  .-++||-=||          |++..                  ..+..+||+||||+   ||+ ..++
T Consensus        23 ~~aR~yd~~L--gGk~n~~~Dr~~~~~~~~~~P~~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~-~~la   99 (277)
T 3giw_A           23 HSARIYDYII--GGKDYYPADKEAGDAMSREWPALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNL-HEIA   99 (277)
T ss_dssp             CHHHHHHHHT--TCSCCCHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCH-HHHH
T ss_pred             Ccchhheeec--CCccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHH-HHHH
Confidence            4567788443  3357899999          54411                  12346899999997   444 4444


Q ss_pred             Hh--hhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595          100 VV--IKMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus       100 ~~--~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      ..  -.-.++++|.+        +++...+..+++|..+...
T Consensus       100 ~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~  141 (277)
T 3giw_A          100 QSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADML  141 (277)
T ss_dssp             HHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTT
T ss_pred             HHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEeccc
Confidence            43  23479999976        3333334567999997763

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=92.42  E-value=0.15  Score=43.28  Aligned_cols=69  Identities=9%  Similarity=-0.067  Sum_probs=45.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh------hhheeeeeccc----------------------------------ccccC
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI------KMKILASLVDG----------------------------------EYYNN  118 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~------~~~i~AtD~s~----------------------------------k~~~~  118 (178)
                      ..+..|||+||..|.+++-++...      ..++++.|.-+                                  .....
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            346799999999999998876543      34677877321                                  11223


Q ss_pred             CC--cceEEEEcccccCCCCCCCCCcceEee
Q 035595          119 GH--ENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus       119 g~--~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      |+  .+++|..+.....+|....+..|++.|
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfI  215 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRM  215 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEE
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEE
Confidence            44  679999887765665432466666655

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=91.35  E-value=0.19  Score=49.55  Aligned_cols=53  Identities=19%  Similarity=0.141  Sum_probs=37.2

Q ss_pred             hcCCCCcccccc------cc----ccc--CCCceeEeeccCCchhHHHhHHhh----hhheeeeecccc
Q 035595           62 RHSSGKFFKFTA------EL----SNC--HEAALDAKGNFGNGSLIADFSVVI----KMKILASLVDGE  114 (178)
Q Consensus        62 rh~~~~FFKdRP------EL----~~~--~~~~~vLEvGCG~Gnta~pll~~~----~~~i~AtD~s~k  114 (178)
                      |...+.||-.++      ++    ...  .+..+|||.|||+|+.++.++...    ...++|+|++..
T Consensus       291 Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~  359 (878)
T 3s1s_A          291 RGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETL  359 (878)
T ss_dssp             CCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGG
T ss_pred             CCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHH
Confidence            444577888771      22    111  246799999999999999988754    347899998744

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.21  E-value=0.047  Score=44.28  Aligned_cols=36  Identities=14%  Similarity=0.185  Sum_probs=30.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY  115 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~  115 (178)
                      .+.+.||+..||+|+|++..+.... +++++|++..+
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~  246 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEY  246 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHH
Confidence            4678999999999999999887765 88899977443

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=89.73  E-value=0.18  Score=41.71  Aligned_cols=23  Identities=22%  Similarity=0.262  Sum_probs=19.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVV  101 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~  101 (178)
                      .+..+|||+|||+|-.++-++..
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~   81 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQA   81 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHH
Confidence            35579999999999988887764

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=89.45  E-value=0.22  Score=48.38  Aligned_cols=66  Identities=6%  Similarity=-0.046  Sum_probs=41.2

Q ss_pred             CceeEeeccCCchhHHHhHHhh--------------hhheeeeecc-------cccccCCCcc-eEEEEccc-ccCCC--
Q 035595           81 AALDAKGNFGNGSLIADFSVVI--------------KMKILASLVD-------GEYYNNGHEN-FSFLVDGE-YYSNC--  135 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~--------------~~~i~AtD~s-------~k~~~~g~~N-~~F~~~~~-~~s~~--  135 (178)
                      ...||+||||+|=...-.+...              +.+++|++.+       ++...+|..+ |++..+.. ...+|  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            4689999999999865444322              2388999876       2222356655 77777544 22332  


Q ss_pred             CCCCCCcceEe
Q 035595          136 PAVSGSQNYVI  146 (178)
Q Consensus       136 p~~~~s~~~vi  146 (178)
                      ...++-+|++|
T Consensus       490 ~~~~ekVDIIV  500 (745)
T 3ua3_A          490 DRGFEQPDIIV  500 (745)
T ss_dssp             HTTCCCCSEEE
T ss_pred             cCCCCcccEEE
Confidence            12257888887

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=88.70  E-value=0.65  Score=37.70  Aligned_cols=49  Identities=14%  Similarity=0.042  Sum_probs=32.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCC---CcceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNG---HENFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g---~~N~~F~~~~~  130 (178)
                      +..+|||+||| +||++ ++.....++++++.+        +....+|   ..++++..+..
T Consensus        30 ~a~~VLEiGtG-ySTl~-lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda   89 (202)
T 3cvo_A           30 EAEVILEYGSG-GSTVV-AAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDI   89 (202)
T ss_dssp             HCSEEEEESCS-HHHHH-HHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCC
T ss_pred             CCCEEEEECch-HHHHH-HHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCc
Confidence            46799999997 45544 444323588888865        2234556   45799988664

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=87.24  E-value=0.96  Score=40.45  Aligned_cols=64  Identities=5%  Similarity=-0.047  Sum_probs=43.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      +.++||++||+.|.-..-|+... +.++|+|...-.. -....+++|.+.....-.|+  .+.+|+|+
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~--~~~~D~vv  275 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPT--RSNISWMV  275 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCC--SSCEEEEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhhcChhhccCCCeEEEeCccccccCC--CCCcCEEE
Confidence            56899999999999998888765 6899999652110 11335788888766422232  25577664

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=87.14  E-value=0.36  Score=42.27  Aligned_cols=49  Identities=12%  Similarity=-0.095  Sum_probs=34.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCcceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~N~~F~~~~~  130 (178)
                      +.+.|||||.|.|.....|+... ..+++|+.++       ++..  ...|+....++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~--~~~~l~ii~~D~  114 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF--EGSPLQILKRDP  114 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT--TTSSCEEECSCT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc--cCCCEEEEECCc
Confidence            35889999999999999999862 1267777655       1211  235777777665

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=87.06  E-value=1.3  Score=38.25  Aligned_cols=33  Identities=6%  Similarity=-0.148  Sum_probs=23.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      +..+||++|||.|.-..=.+... ...+.|.|+.
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG  107 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG  107 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEe
Confidence            45689999999999988666431 1255666655

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=86.98  E-value=0.37  Score=42.45  Aligned_cols=21  Identities=5%  Similarity=-0.084  Sum_probs=17.9

Q ss_pred             CceeEeeccCCchhHHHhHHh
Q 035595           81 AALDAKGNFGNGSLIADFSVV  101 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~  101 (178)
                      ..+|+++|||+|..++.++..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~   73 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDF   73 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHH
Confidence            589999999999888887654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=86.84  E-value=0.65  Score=40.14  Aligned_cols=67  Identities=4%  Similarity=-0.049  Sum_probs=45.6

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc-----cCCCcceEEEEcccccCCCCCC----CCCcceEee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY-----NNGHENFSFLVDGEYYSNCPAV----SGSQNYVIL  147 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~-----~~g~~N~~F~~~~~~~s~~p~~----~~s~~~vil  147 (178)
                      ..+...+|+++||.|.-..-|+.. ..+++|.|++..+.     -.. .++.|..+... .+...|    -+++|.|++
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~L~~-~rv~lv~~~f~-~l~~~L~~~g~~~vDgIL~   95 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLHL-PGLTVVQGNFR-HLKRHLAALGVERVDGILA   95 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCC-TTEEEEESCGG-GHHHHHHHTTCSCEEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHhhcc-CCEEEEECCcc-hHHHHHHHcCCCCcCEEEe
Confidence            346789999999999999999998 45899999872211     111 57999987773 222111    146776554

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=86.09  E-value=0.34  Score=44.32  Aligned_cols=47  Identities=11%  Similarity=0.236  Sum_probs=31.9

Q ss_pred             CCCcccccc------cccccCCCceeEeeccCCchhHHHhHHhh----------------hhheeeeecc
Q 035595           65 SGKFFKFTA------ELSNCHEAALDAKGNFGNGSLIADFSVVI----------------KMKILASLVD  112 (178)
Q Consensus        65 ~~~FFKdRP------EL~~~~~~~~vLEvGCG~Gnta~pll~~~----------------~~~i~AtD~s  112 (178)
                      .+-||-.|+      +++.. ...+||+.+||+|+..+..+...                ...+++.|++
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid  292 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEP-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESN  292 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCC-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCC
T ss_pred             CCeEeCCHHHHHHHHHHHhc-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCC
Confidence            467887772      22222 23499999999999988876432                2467888876

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=83.77  E-value=2.2  Score=36.94  Aligned_cols=33  Identities=12%  Similarity=0.060  Sum_probs=23.4

Q ss_pred             CCceeEeeccCCchhHHHhHHh-hhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVV-IKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s  112 (178)
                      +..+||+||||.|.-..=.+.. ....+.++|+.
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG  123 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLG  123 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEec
Confidence            4568999999999987765542 22256677765

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=82.71  E-value=0.54  Score=34.50  Aligned_cols=60  Identities=7%  Similarity=-0.185  Sum_probs=33.0

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccCCCcceEEEEcccccCCCC-CC-CCCcceEeeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNNGHENFSFLVDGEYYSNCP-AV-SGSQNYVILAN  149 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~g~~N~~F~~~~~~~s~~p-~~-~~s~~~vil~n  149 (178)
                      +.+..+||+||||+..  +.+.+..  --   .++++..    .++.|..+... .++. ++ +++.|+|+..+
T Consensus        10 ~~~g~~vL~~~~g~v~--vD~s~~m--l~---~a~~~~~----~~~~~~~~d~~-~~~~~~~~~~~fD~V~~~~   71 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSP--VEALKGL--VD---KLQALTG----NEGRVSVENIK-QLLQSAHKESSFDIILSGL   71 (176)
T ss_dssp             CCTTSEEEEEECTTSC--HHHHHHH--HH---HHHHHTT----TTSEEEEEEGG-GGGGGCCCSSCEEEEEECC
T ss_pred             CCCCCEEEEecCCcee--eeCCHHH--HH---HHHHhcc----cCcEEEEechh-cCccccCCCCCEeEEEECC
Confidence            4577899999999743  3333221  00   0112211    14788776654 3332 23 67889888643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	178
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.87
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.75
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.64
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.62
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.62
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.61
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.58
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.56
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.55
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.54
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.54
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.48
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.44
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.43
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.36
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.34
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.32
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.3
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.28
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.25
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.24
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.2
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.13
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.12
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.1
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.07
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.05
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.0
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.98
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.97
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.91
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.9
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.89
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.89
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.88
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.86
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.83
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.82
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.82
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.8
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.76
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.72
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.7
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.69
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.69
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.64
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.64
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.63
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.56
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.5
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.49
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.48
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.45
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.43
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.34
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.3
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.29
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.17
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.17
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.06
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.01
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.95
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.84
d2h00a1	250	Methyltransferase 10 domain containing protein MET	96.52
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.51
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	96.49
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	96.33
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.06
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.98
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.98
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	95.74
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.72
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.67
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	95.21
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	94.92
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	94.33
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	93.64
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	93.42
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	93.1
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	92.26
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	91.01
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	87.89
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	86.43
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	85.8
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	83.17
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	81.92

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.87  E-value=1.2e-09  Score=82.83  Aligned_cols=70  Identities=14%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEe
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVI  146 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vi  146 (178)
                      ....+..+|||||||+|..+..|+.... +++|+|++        ++....|..|+.|.++... .+|  + .++.|+|+
T Consensus        11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~-~l~--~~~~~fD~v~   86 (231)
T d1vl5a_          11 AALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QMP--FTDERFHIVT   86 (231)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCC--SCTTCEEEEE
T ss_pred             cCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccc-ccc--cccccccccc
Confidence            3446788999999999999999998875 89999987        3345678899999997765 454  3 58999998


Q ss_pred             eee
Q 035595          147 LAN  149 (178)
Q Consensus       147 l~n  149 (178)
                      ..+
T Consensus        87 ~~~   89 (231)
T d1vl5a_          87 CRI   89 (231)
T ss_dssp             EES
T ss_pred             ccc
Confidence            764

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=4.4e-09  Score=81.18  Aligned_cols=69  Identities=16%  Similarity=0.087  Sum_probs=54.3

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ...+..+|||||||||.++..|+.... .++++|.+        +++...|..|+.|.++... .+|. -.++.|+|+..
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~fD~v~~~   89 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SLPF-PDDSFDIITCR   89 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT-BCCS-CTTCEEEEEEE
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccc-cccc-cccccceeeee
Confidence            345788999999999999999998774 89999987        3455678889999998765 4541 14788988764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.4e-08  Score=77.45  Aligned_cols=93  Identities=9%  Similarity=-0.006  Sum_probs=63.8

Q ss_pred             cchHHHHHHHhhcCCCCccccc--ccc-------cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc-----
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFT--AEL-------SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY-----  116 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdR--PEL-------~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~-----  116 (178)
                      .+.+.|++.|..+++ .|..+.  |.|       ....+..+||++|||+|..+..|+..- ..++|+|+|..+-     
T Consensus         8 ~~~e~W~~~~~~~~~-~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G-~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1           8 LTLEEWQDKWVNGKT-AFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRG-HSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCHHHHHHHHHHTCC-TTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT-CEEEEECSCHHHHHHHHH
T ss_pred             CCHHHHHHHHccCCC-CCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCC-CcEEEEeCCHHHHHHHHH
Confidence            356799999988864 677666  333       334567899999999999999999865 4899999883221     


Q ss_pred             --------------------cCCCcceEEEEcccccCCCCCCCCCcceEe
Q 035595          117 --------------------NNGHENFSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus       117 --------------------~~g~~N~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                                          .....+++|.++... .+++...+.-|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~l~~~~~~~fd~i~  134 (229)
T d2bzga1          86 EQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF-DLPRTNIGKFDMIW  134 (229)
T ss_dssp             HTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG-GGGGSCCCCEEEEE
T ss_pred             HhhccccccchhcccccceeeecCCcEEEEEcchh-hccccccCceeEEE
Confidence                                111235777776654 44455555566554

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.62  E-value=1.3e-08  Score=77.93  Aligned_cols=90  Identities=9%  Similarity=0.021  Sum_probs=59.4

Q ss_pred             hHHHHHHHhhcCCCCcccccc---ccc---ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccC
Q 035595           53 SDAWKRFHSRHSSGKFFKFTA---ELS---NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNN  118 (178)
Q Consensus        53 ~~~Wd~Fy~rh~~~~FFKdRP---EL~---~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~  118 (178)
                      ++.||..|.+.. ..+-++..   +|.   ...+..+|||||||||..+.+|+.... +++++|.+        ++....
T Consensus         9 a~~Yd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~   86 (251)
T d1wzna1           9 AEYYDTIYRRRI-ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKER   86 (251)
T ss_dssp             GGGHHHHTHHHH-HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhh-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccc
Confidence            457888886653 12322221   111   223567899999999999999998764 89999987        222232


Q ss_pred             CCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595          119 GHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus       119 g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      +. ++.|.++... .++  +++..|+|+..
T Consensus        87 ~~-~i~~~~~d~~-~l~--~~~~fD~I~~~  112 (251)
T d1wzna1          87 NL-KIEFLQGDVL-EIA--FKNEFDAVTMF  112 (251)
T ss_dssp             TC-CCEEEESCGG-GCC--CCSCEEEEEEC
T ss_pred             cc-cchheehhhh-hcc--cccccchHhhh
Confidence            33 6899988764 444  34678888765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.62  E-value=9.9e-09  Score=81.17  Aligned_cols=65  Identities=12%  Similarity=0.134  Sum_probs=51.7

Q ss_pred             eeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           83 LDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        83 ~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      .|||||||+|..++.|+... ...++|+|++        +++...|..|+.|..+++. .+...+ ++++|.|.+.
T Consensus        32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~-~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDAD-TLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGG-GHHHHCCTTSCCEEEEE
T ss_pred             eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchh-hhhcccCchhhhccccc
Confidence            68999999999999999874 4578999976        5677889999999998874 333344 7788877654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.8e-08  Score=77.27  Aligned_cols=70  Identities=6%  Similarity=0.003  Sum_probs=53.3

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ...+..+|||||||+|.++.+++......++++|.+        +++...|+.+ ++|..+... ++.+  .++.|+|+.
T Consensus        30 ~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~-~~~~--~~~fD~v~~  106 (245)
T d1nkva_          30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYVA--NEKCDVAAC  106 (245)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCCC--SSCEEEEEE
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh-hccc--cCceeEEEE
Confidence            345778999999999999999998765689999987        3344557654 999997664 3322  678999986


Q ss_pred             ee
Q 035595          148 AN  149 (178)
Q Consensus       148 ~n  149 (178)
                      ..
T Consensus       107 ~~  108 (245)
T d1nkva_         107 VG  108 (245)
T ss_dssp             ES
T ss_pred             Ee
Confidence            53

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.58  E-value=4.6e-08  Score=77.26  Aligned_cols=78  Identities=10%  Similarity=0.225  Sum_probs=59.8

Q ss_pred             hHHHHHHHhhcCCCCcccccccccccCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcce
Q 035595           53 SDAWKRFHSRHSSGKFFKFTAELSNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENF  123 (178)
Q Consensus        53 ~~~Wd~Fy~rh~~~~FFKdRPEL~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~  123 (178)
                      ...|+.+|.+.+        |         .|||||||+|..++-++... ...++++|++        +++...+..|+
T Consensus        21 ~~~w~~~f~~~~--------p---------lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni   83 (204)
T d1yzha1          21 KAKWRDLFGNDN--------P---------IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNI   83 (204)
T ss_dssp             TTTHHHHHTSCC--------C---------EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSE
T ss_pred             hccHHHHcCCCC--------C---------eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccc
Confidence            457999995432        3         68999999999999999874 5578999977        55667899999


Q ss_pred             EEEEcccccCCCCCC-CCCcceEeee
Q 035595          124 SFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus       124 ~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      .|..+++. .+..-+ ++|+|.|.+.
T Consensus        84 ~~~~~da~-~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          84 KLLWVDGS-DLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             EEEECCSS-CGGGTSCTTCCSEEEEE
T ss_pred             eeeecCHH-HHhhhccCCceehhccc
Confidence            99998875 344445 6778876643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.56  E-value=4.9e-08  Score=73.74  Aligned_cols=66  Identities=11%  Similarity=-0.002  Sum_probs=51.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+.+|||||||+|..+..|+... .+++|+|++        +.+...|+.|+.|...... .+++  +++.|+|+..+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~-~~~~--~~~fD~I~~~~  103 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLN-TLTF--DGEYDFILSTV  103 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTT-TCCC--CCCEEEEEEES
T ss_pred             CCCcEEEECCCCCHHHHHHHHHh-hhhccccCcHHHHHHHHHHhhhccccchhhhheecc-cccc--cccccEEEEee
Confidence            45699999999999999999876 489999988        3356678889999887765 3332  57789888654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.1e-08  Score=75.39  Aligned_cols=71  Identities=10%  Similarity=0.060  Sum_probs=52.8

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ...+..+|||||||+|..+..|+.....+++++|.+        +++...+..|++|.++... .+++. +++.|+|++.
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~-~~~~~-~~~fD~I~~~  134 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ-DFTPE-PDSYDVIWIQ  134 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGG-GCCCC-SSCEEEEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccc-ccccc-cccccccccc
Confidence            334668999999999999999886544489999977        3445667788999997764 34422 6788998874


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      +
T Consensus       135 ~  135 (222)
T d2ex4a1         135 W  135 (222)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=5e-08  Score=72.60  Aligned_cols=67  Identities=12%  Similarity=0.062  Sum_probs=46.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|.++..|+.... +++|+|+|        ++....+ .++.+...... .+| --.++.|+|+..+
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~-~~~~~~~~d~~-~l~-~~~~~fD~I~~~~  110 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDAR-KLS-FEDKTFDYVIFID  110 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTT-SCC-SCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccc-ccccccccccc-ccc-ccCcCceEEEEec
Confidence            4668999999999999999998764 89999987        2333333 34566665443 232 1257889988765

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.54  E-value=5e-08  Score=77.43  Aligned_cols=69  Identities=10%  Similarity=-0.005  Sum_probs=52.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|.++..|+......++|+|++        ++....|+. ++.|..+... .+| --.++.|+|+...
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l~-~~~~sfD~V~~~~  143 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIP-CEDNSYDFIWSQD  143 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCS-SCTTCEEEEEEES
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccc-ccc-ccccccchhhccc
Confidence            4678999999999999999998755589999977        334455664 6999998775 443 1158899998764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.1e-08  Score=79.09  Aligned_cols=60  Identities=7%  Similarity=-0.117  Sum_probs=42.9

Q ss_pred             cchHHHHHHHhhcCCCCccccc----------cccccc--CCCceeEeeccCCchhH-HHhHHhhhhheeeeecc
Q 035595           51 KDSDAWKRFHSRHSSGKFFKFT----------AELSNC--HEAALDAKGNFGNGSLI-ADFSVVIKMKILASLVD  112 (178)
Q Consensus        51 ~~~~~Wd~Fy~rh~~~~FFKdR----------PEL~~~--~~~~~vLEvGCG~Gnta-~pll~~~~~~i~AtD~s  112 (178)
                      ++..+|+.||+.+. ++|++++          +++.+.  ....+|||||||+|... +.+.+... +++|+|.+
T Consensus        14 ~~~~Y~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S   86 (263)
T d2g72a1          14 EPRAYLRNNYAPPR-GDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFL   86 (263)
T ss_dssp             CHHHHHHHHHSTTT-TCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSC
T ss_pred             CHHHHHHHHhCcCc-ccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCC
Confidence            35679999997775 7999998          333332  24679999999999443 33334454 79999987

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.7e-08  Score=74.98  Aligned_cols=60  Identities=8%  Similarity=-0.201  Sum_probs=42.8

Q ss_pred             chHHHHHHHhhcCCCCccccc---------cccccc--CCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           52 DSDAWKRFHSRHSSGKFFKFT---------AELSNC--HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdR---------PEL~~~--~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +..+|+.||.++. ..|+++.         +++...  .+..+|||||||+|...+.++......++++|++
T Consensus        13 ~~~Y~~~~Y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S   83 (257)
T d2a14a1          13 PRDYLATYYSFDG-SPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFT   83 (257)
T ss_dssp             HHHHHHHHCCCCC-SCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESC
T ss_pred             hHHHHHHHhCcCc-cccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCC
Confidence            5689999998875 5777663         343332  2457899999999987665554433379999987

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.43  E-value=1.9e-07  Score=73.05  Aligned_cols=69  Identities=7%  Similarity=-0.031  Sum_probs=49.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+|||||||+|..+.+++.....+++|+|+|        +++.+.+. .++.|.+++.. ..+.-..++.|+|+..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~-~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCCCCSSCEEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchh-hhcccccccceEEEEc
Confidence            4568999999999999999988643479999988        22222333 37899987764 3333346789998764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.36  E-value=1.7e-07  Score=72.19  Aligned_cols=65  Identities=5%  Similarity=-0.016  Sum_probs=47.8

Q ss_pred             CceeEeeccCCchhHHHhHHhhhhheeeeeccc----ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           81 AALDAKGNFGNGSLIADFSVVIKMKILASLVDG----EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~----k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ..+|||||||+|.++..|+... ..++|+|.+.    .+......|+.|..+... ..+  ++++.|+|++.+
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~-~~~--~~~~fD~I~~~~   89 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITYIHSRFE-DAQ--LPRRYDNIVLTH   89 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSCSCEEEEESCGG-GCC--CSSCEEEEEEES
T ss_pred             CCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhccccccccccccccc-ccc--cccccccccccc
Confidence            5579999999999999988766 4899999882    222223347888886654 333  368899998876

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.34  E-value=1.2e-07  Score=76.27  Aligned_cols=67  Identities=10%  Similarity=-0.054  Sum_probs=49.2

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCcceEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ..+.+|||||||+|..+.-|+...  ..+++++|++.        +....+. |+.|..+... .++  ++++.|+|+..
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~-~~~--~~~~fD~v~~~  101 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDAT-EIE--LNDKYDIAICH  101 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTT-TCC--CSSCEEEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccc-ccc--ccCCceEEEEe
Confidence            456899999999999999888754  24789999872        2333343 7899887665 333  35789999877


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      +
T Consensus       102 ~  102 (281)
T d2gh1a1         102 A  102 (281)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=6e-08  Score=72.76  Aligned_cols=89  Identities=7%  Similarity=0.032  Sum_probs=54.9

Q ss_pred             hHHHHHHHhhcCCCCccccc-ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccccC-CCcceEEEEccc
Q 035595           53 SDAWKRFHSRHSSGKFFKFT-AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYNN-GHENFSFLVDGE  130 (178)
Q Consensus        53 ~~~Wd~Fy~rh~~~~FFKdR-PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~~-g~~N~~F~~~~~  130 (178)
                      ++.||+.|..|.  ..|..+ .-|..-.+..+|||||||+|..+.++.     .++++|.+....+- .-.++.|.++..
T Consensus        10 a~~Yd~w~~~~~--~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~~~~~~~~d~   82 (208)
T d1vlma_          10 VNEYERWFLVHR--FAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRGVFVLKGTA   82 (208)
T ss_dssp             HHHHHHHHHHTH--HHHHHHHHHHHHHCCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHTTCEEEECBT
T ss_pred             HHHHHHHHHHhH--HHHHHHHHHHHhhCCCCeEEEECCCCcccccccc-----eEEEEeCChhhcccccccccccccccc
Confidence            455677776664  233333 222222345689999999999888773     46899988322111 113688888766


Q ss_pred             ccCCCCCCCCCcceEeeeeh
Q 035595          131 YYSNCPAVSGSQNYVILANL  150 (178)
Q Consensus       131 ~~s~~p~~~~s~~~vil~nl  150 (178)
                      . .+| --+++.|+|+..+.
T Consensus        83 ~-~l~-~~~~~fD~I~~~~~  100 (208)
T d1vlma_          83 E-NLP-LKDESFDFALMVTT  100 (208)
T ss_dssp             T-BCC-SCTTCEEEEEEESC
T ss_pred             c-ccc-cccccccccccccc
Confidence            4 343 12578899987763

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.30  E-value=2.7e-07  Score=71.15  Aligned_cols=64  Identities=9%  Similarity=0.043  Sum_probs=47.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      .++.+|||||||+|..+.+|+.... +++|+|.|        ++....|. ++.|.++... .++  ++++.|+|+.
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~-~~~--~~~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDIS-NLN--INRKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGG-GCC--CSCCEEEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-cceeeccchh-hhc--ccccccccce
Confidence            3457899999999999999999874 89999988        23333344 6889887654 333  3678898874

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.28  E-value=3.7e-07  Score=68.61  Aligned_cols=63  Identities=11%  Similarity=-0.070  Sum_probs=42.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc----cccccCCCcceEEEEcccccCCCCCC-CCCcceEeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD----GEYYNNGHENFSFLVDGEYYSNCPAV-SGSQNYVILA  148 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s----~k~~~~g~~N~~F~~~~~~~s~~p~~-~~s~~~vil~  148 (178)
                      ++.+|||+|||+|..+..|+.... +++|+|.+    +.+.+.+..+  +..+... .+|  . .++.|+||..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~~--~~~~~~~-~l~--~~~~~fD~ii~~  109 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVKN--VVEAKAE-DLP--FPSGAFEAVLAL  109 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCSC--EEECCTT-SCC--SCTTCEEEEEEC
T ss_pred             CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccccc--ccccccc-ccc--cccccccceeee
Confidence            467899999999999999998764 89999988    2223333333  3333332 232  3 5789988854

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.25  E-value=7.2e-07  Score=67.63  Aligned_cols=67  Identities=12%  Similarity=0.032  Sum_probs=48.4

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc--eEEEEcccccCCCCCCCCCcceEe
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN--FSFLVDGEYYSNCPAVSGSQNYVI  146 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N--~~F~~~~~~~s~~p~~~~s~~~vi  146 (178)
                      ...+..+|||+|||+|..++.++.... +++++|++        +.+...++.+  +.|..+......+   +++.|+|+
T Consensus        49 ~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~---~~~fD~Ii  124 (194)
T d1dusa_          49 VVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---DRKYNKII  124 (194)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---TSCEEEEE
T ss_pred             CcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc---cCCceEEE
Confidence            345678999999999999999998775 89999977        2334445554  7777766542221   56788887


Q ss_pred             e
Q 035595          147 L  147 (178)
Q Consensus       147 l  147 (178)
                      +
T Consensus       125 ~  125 (194)
T d1dusa_         125 T  125 (194)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.24  E-value=8.5e-07  Score=71.41  Aligned_cols=80  Identities=18%  Similarity=0.153  Sum_probs=57.0

Q ss_pred             Cccccc------ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccccc------ccCCCcceEEEEcccccCC
Q 035595           67 KFFKFT------AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY------YNNGHENFSFLVDGEYYSN  134 (178)
Q Consensus        67 ~FFKdR------PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~~s~  134 (178)
                      ||-.|+      -+.+...+.++|||||||+|+....|+...+ +++|++++.+.      ...+..|+.+..++... .
T Consensus         2 nFL~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~-~   79 (235)
T d1qama_           2 NFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQ-F   79 (235)
T ss_dssp             CBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGG-C
T ss_pred             CCcCCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcccchhhhhhhhhh-c
Confidence            577776      2334446789999999999999999999875 89998877222      12356789999988752 1


Q ss_pred             CCCCCCCcceEeeeeh
Q 035595          135 CPAVSGSQNYVILANL  150 (178)
Q Consensus       135 ~p~~~~s~~~vil~nl  150 (178)
                        .++....+.|+.||
T Consensus        80 --~~~~~~~~~vv~NL   93 (235)
T d1qama_          80 --KFPKNQSYKIFGNI   93 (235)
T ss_dssp             --CCCSSCCCEEEEEC
T ss_pred             --cccccccceeeeee
Confidence              12334556777887

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.20  E-value=7.2e-07  Score=72.47  Aligned_cols=82  Identities=15%  Similarity=0.212  Sum_probs=59.2

Q ss_pred             CCcccccc------cccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc------cCCCcceEEEEcccccC
Q 035595           66 GKFFKFTA------ELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY------NNGHENFSFLVDGEYYS  133 (178)
Q Consensus        66 ~~FFKdRP------EL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~------~~g~~N~~F~~~~~~~s  133 (178)
                      .||-.|.-      +.....+.+.|||||||+|....+|+...+ +++|++++.+..      ..+..|+.+..++.. .
T Consensus         9 QnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l-~   86 (245)
T d1yuba_           9 QNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDIL-Q   86 (245)
T ss_dssp             CCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCT-T
T ss_pred             CcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhh-c
Confidence            47888871      223445789999999999999999999875 899998773321      124468888887774 2


Q ss_pred             CCCCCCCCcceEeeeehh
Q 035595          134 NCPAVSGSQNYVILANLK  151 (178)
Q Consensus       134 ~~p~~~~s~~~vil~nl~  151 (178)
                      .  .++....+.|+.||-
T Consensus        87 ~--~~~~~~~~~vv~NLP  102 (245)
T d1yuba_          87 F--QFPNKQRYKIVGNIP  102 (245)
T ss_dssp             T--TCCCSSEEEEEEECC
T ss_pred             c--ccccceeeeEeeeee
Confidence            2  245677788889984

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.13  E-value=7.3e-07  Score=67.35  Aligned_cols=67  Identities=7%  Similarity=0.122  Sum_probs=48.9

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCCCCCcceEee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ..+.++|||+|||+|..++.++.... +++|+|++        +++...|+ .|++|.++... ..+.. .++-|.+++
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~-~~~~~-~~~~D~v~~  106 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP-EALCK-IPDIDIAVV  106 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH-HHHTT-SCCEEEEEE
T ss_pred             CCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh-hcccc-cCCcCEEEE
Confidence            35788999999999999999988765 89999977        44566777 48999987763 11111 235565554

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.12  E-value=4.7e-07  Score=65.20  Aligned_cols=34  Identities=9%  Similarity=-0.088  Sum_probs=29.9

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      ..+..+||++|||+|..+..|+..- ..++|+|+|
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G-~~V~gvD~S   51 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELS   51 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcC-CceEeeccc
Confidence            3577899999999999999999864 589999988

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=9.8e-07  Score=70.47  Aligned_cols=76  Identities=14%  Similarity=0.093  Sum_probs=53.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecccc---cccCCCcceEEEEcccccCCCCCCCCCcceEee----eeh
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGE---YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL----ANL  150 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k---~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil----~nl  150 (178)
                      ....+|||||||+|..+..|+... ...++++|++..   .+.....|+.|.++... .+| --.++.|+|+.    .++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~-~l~-~~~~sfD~v~~~~~~~~~  160 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLP-FSDTSMDAIIRIYAPCKA  160 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCS-BCTTCEEEEEEESCCCCH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehh-hcc-CCCCCEEEEeecCCHHHH
Confidence            356799999999999999999864 457899998832   23334568999887664 333 12678998874    345


Q ss_pred             hhhhhh
Q 035595          151 KSYRRV  156 (178)
Q Consensus       151 ~~~~~~  156 (178)
                      +.++||
T Consensus       161 ~e~~rv  166 (268)
T d1p91a_         161 EELARV  166 (268)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555555

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=2.1e-06  Score=67.12  Aligned_cols=71  Identities=17%  Similarity=0.116  Sum_probs=51.3

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceE
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYV  145 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~v  145 (178)
                      +...+.++|||||||+|..+..|+...  ...++++|++        ++....+..|+.+..+......+  -.+..|++
T Consensus        71 l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~--~~~~fD~I  148 (213)
T d1dl5a1          71 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--EFSPYDVI  148 (213)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--GGCCEEEE
T ss_pred             hhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc--cccchhhh
Confidence            345678999999999999999998765  2468999966        45566788999998865542221  14567876


Q ss_pred             eee
Q 035595          146 ILA  148 (178)
Q Consensus       146 il~  148 (178)
                      ++.
T Consensus       149 ~~~  151 (213)
T d1dl5a1         149 FVT  151 (213)
T ss_dssp             EEC
T ss_pred             hhh
Confidence            653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.05  E-value=1.6e-06  Score=68.07  Aligned_cols=69  Identities=7%  Similarity=-0.024  Sum_probs=47.0

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc------ccccCCCcceEEEEccccc-CCCCCCCCCcceE
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG------EYYNNGHENFSFLVDGEYY-SNCPAVSGSQNYV  145 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~------k~~~~g~~N~~F~~~~~~~-s~~p~~~~s~~~v  145 (178)
                      ...|.++|||+|||+|.++..|+..+ +.+++|+|++.      +.......|+.|....... ..++.....+|++
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v  129 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI  129 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEE
Confidence            34678999999999999999999865 34799999871      1111234588888866532 2334445555554

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.00  E-value=4.8e-06  Score=66.14  Aligned_cols=69  Identities=7%  Similarity=0.004  Sum_probs=49.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeeccc------ccccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG------EYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~------k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||+|||+|..+..|+...-..++++|.+.      |....+..+++|.+.... .+++. +++.|+|++..
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~-~~~~~-~~~fD~I~~~~  166 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TATLP-PNTYDLIVIQW  166 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GCCCC-SSCEEEEEEES
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEcccc-ccccC-CCccceEEeec
Confidence            35679999999999999988865333789999772      223345667899887664 33321 57889988765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.98  E-value=5.4e-06  Score=63.20  Aligned_cols=34  Identities=12%  Similarity=-0.030  Sum_probs=28.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh---hhheeeeecc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI---KMKILASLVD  112 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~---~~~i~AtD~s  112 (178)
                      .+..+|||||||||..++.|+...   ..+++|+|.|
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S   74 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNS   74 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSC
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCC
Confidence            356799999999999999999753   3478999987

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=1.5e-06  Score=69.19  Aligned_cols=59  Identities=8%  Similarity=0.059  Sum_probs=40.5

Q ss_pred             chHHHHHHHhhcCCCCccccc---ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           52 DSDAWKRFHSRHSSGKFFKFT---AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        52 ~~~~Wd~Fy~rh~~~~FFKdR---PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      .++.|+.|+.... .+.-..+   -+++...+..+|||+|||+|..+.+|+... ..++|+|.|
T Consensus        26 ~~~~~~~~~~~~~-~r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g-~~v~gvD~S   87 (292)
T d1xvaa_          26 AARVWQLYIGDTR-SRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDAS   87 (292)
T ss_dssp             HHHHHHHHHHTTC-CBCHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTT-CEEEEEESC
T ss_pred             HHHHHHHHhcchh-hhHHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcC-CeeeeccCc
Confidence            4667888885443 1111111   122333456799999999999999999875 489999987

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.91  E-value=1.6e-05  Score=61.05  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=35.0

Q ss_pred             CCccccc---ccc----cccCCCceeEeeccCCchhHHHhHHhh---------hhheeeeecc
Q 035595           66 GKFFKFT---AEL----SNCHEAALDAKGNFGNGSLIADFSVVI---------KMKILASLVD  112 (178)
Q Consensus        66 ~~FFKdR---PEL----~~~~~~~~vLEvGCG~Gnta~pll~~~---------~~~i~AtD~s  112 (178)
                      +.||+|+   +.|    ....++.+|+.+|||||..++.|+...         +.+|+|||++
T Consensus         3 T~FFRd~~~f~~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~   65 (193)
T d1af7a2           3 TAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDID   65 (193)
T ss_dssp             CCTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESC
T ss_pred             CCCcCCcHHHHHHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCC
Confidence            4799998   222    344567899999999999888876432         2359999977

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.90  E-value=3.8e-06  Score=66.46  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=45.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc---ccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY---YNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~---~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ...+|||+|||||..++.++.....+++++|++..+   +..-..++.|..++..     .+++..|+||+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~-----~l~~~fD~Vi~  113 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVS-----EISGKYDTWIM  113 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGG-----GCCCCEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehh-----hcCCcceEEEe
Confidence            467999999999999888777644479999988332   2333456888887653     35678887664

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=8.8e-06  Score=66.87  Aligned_cols=69  Identities=16%  Similarity=0.239  Sum_probs=51.3

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc-----------ccccCCCcceEEEEcccccCCCCCC-CCC
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG-----------EYYNNGHENFSFLVDGEYYSNCPAV-SGS  141 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~-----------k~~~~g~~N~~F~~~~~~~s~~p~~-~~s  141 (178)
                      +...|.++|||+|||+|+..+.|+..+  .-++++.|+++           +.......|+.|........   .+ +++
T Consensus        92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~---~~~~~~  168 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS---ELPDGS  168 (264)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC---CCCTTC
T ss_pred             hCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc---cccCCC
Confidence            345688999999999999999999876  35799999771           11224467999998765421   22 688


Q ss_pred             cceEee
Q 035595          142 QNYVIL  147 (178)
Q Consensus       142 ~~~vil  147 (178)
                      .|.|+|
T Consensus       169 fDaV~l  174 (264)
T d1i9ga_         169 VDRAVL  174 (264)
T ss_dssp             EEEEEE
T ss_pred             cceEEE
Confidence            998876

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.3e-05  Score=67.31  Aligned_cols=70  Identities=13%  Similarity=0.134  Sum_probs=48.1

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccccc-------------------ccCCCcceEEEEcccccCCC
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEY-------------------YNNGHENFSFLVDGEYYSNC  135 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~-------------------~~~g~~N~~F~~~~~~~s~~  135 (178)
                      ...+.++|||+|||+|+..+.|+..+  .-++++.|++++.                   ......|++|...... ...
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~-~~~  173 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS-GAT  173 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT-CCC
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchh-hcc
Confidence            44678999999999999999999875  3479999976211                   2334578999987665 444


Q ss_pred             CCC-CCCcceEee
Q 035595          136 PAV-SGSQNYVIL  147 (178)
Q Consensus       136 p~~-~~s~~~vil  147 (178)
                      .++ +++.|.|+|
T Consensus       174 ~~~~~~~fD~V~L  186 (324)
T d2b25a1         174 EDIKSLTFDAVAL  186 (324)
T ss_dssp             -------EEEEEE
T ss_pred             cccCCCCcceEee
Confidence            566 678888875

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=1.2e-05  Score=65.35  Aligned_cols=67  Identities=6%  Similarity=0.012  Sum_probs=48.0

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      ..+..+|||||||+|.++.-++.....++++++++        ++....|..+ +.+......     .++++-|.++.+
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~-----~~~~~fD~i~si  124 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE-----DFAEPVDRIVSI  124 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG-----GCCCCCSEEEEE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh-----hhccchhhhhHh
Confidence            45789999999999999988887765689999977        4556666654 555543322     235677887765


Q ss_pred             e
Q 035595          149 N  149 (178)
Q Consensus       149 n  149 (178)
                      .
T Consensus       125 ~  125 (280)
T d2fk8a1         125 E  125 (280)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.86  E-value=1.3e-05  Score=63.69  Aligned_cols=55  Identities=9%  Similarity=-0.104  Sum_probs=39.3

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhh-hhheeeeeccc------ccccCCCcceEEEEccc
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDG------EYYNNGHENFSFLVDGE  130 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~------k~~~~g~~N~~F~~~~~  130 (178)
                      ....+..+||++|||+|.|+..|+... .-.++|+|++.      +.-.....|+.+.....
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~  131 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA  131 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee
Confidence            345678999999999999999999865 34799999882      11122345666665544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.83  E-value=1.4e-05  Score=62.62  Aligned_cols=67  Identities=9%  Similarity=0.074  Sum_probs=47.6

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCC-cceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGH-ENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~-~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+|||||||+|..+..|+... ....+..|..       ++....|. .+++|..+....    ..+++.|+|++.+
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~----~~~~~~D~v~~~~  154 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE----PLPRKADAIILSF  154 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS----CCSSCEEEEEEES
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchh----hcccchhheeecc
Confidence            456799999999999999999875 3455666643       33444454 469999876542    2346789998775

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=1.1e-05  Score=65.73  Aligned_cols=54  Identities=11%  Similarity=0.045  Sum_probs=45.0

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      ...+..+|||+-||+|+.++||+...+ +++|++.+        ..+..+|+.|+.|..+...
T Consensus       209 ~~~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~  270 (358)
T d1uwva2         209 DVQPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE  270 (358)
T ss_dssp             TCCTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred             ccCCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcccccceeeecchh
Confidence            334678999999999999999999886 89999965        4445779999999997764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.82  E-value=1.5e-05  Score=64.84  Aligned_cols=90  Identities=10%  Similarity=-0.089  Sum_probs=53.3

Q ss_pred             HHHHHHHhhcCCCCcccccc---cccccCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccc-cCC
Q 035595           54 DAWKRFHSRHSSGKFFKFTA---ELSNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYY-NNG  119 (178)
Q Consensus        54 ~~Wd~Fy~rh~~~~FFKdRP---EL~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~-~~g  119 (178)
                      ..|...-+|..+-=+.||=-   .++.-.|.++|||+|||+|+.+.-|+..+  .-+++++|+++        +.. ..+
T Consensus        56 ~~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~  135 (250)
T d1yb2a1          56 MYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD  135 (250)
T ss_dssp             GGHHHHC------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC
T ss_pred             HHHHhhCCCCCcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC
Confidence            45555554444333444442   12234578999999999999999999875  34799999772        111 236


Q ss_pred             CcceEEEEcccccCCCCCC-CCCcceEee
Q 035595          120 HENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus       120 ~~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      ..|++|...+..    ..+ +++.|.|+|
T Consensus       136 ~~nv~~~~~Di~----~~~~~~~fD~V~l  160 (250)
T d1yb2a1         136 IGNVRTSRSDIA----DFISDQMYDAVIA  160 (250)
T ss_dssp             CTTEEEECSCTT----TCCCSCCEEEEEE
T ss_pred             CCceEEEEeeee----cccccceeeeeee
Confidence            778999986554    234 567888775

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.80  E-value=1.5e-05  Score=63.59  Aligned_cols=69  Identities=9%  Similarity=0.034  Sum_probs=45.2

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh--hhheeeeeccccc------ccCCCcceEEEEcccc-cCCCCCCCCCcceEe
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEY------YNNGHENFSFLVDGEY-YSNCPAVSGSQNYVI  146 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~------~~~g~~N~~F~~~~~~-~s~~p~~~~s~~~vi  146 (178)
                      ..|.++||++|||+|.|+..|+..+  ..+++|+|++.+.      ......|+........ ....+...+++|++.
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEE
Confidence            3578999999999999999999976  4589999987111      1223445555554442 122233356777654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=2.4e-05  Score=64.21  Aligned_cols=67  Identities=7%  Similarity=0.004  Sum_probs=47.3

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ...+..+|||||||.|++++-++.....+++++.+|        ++....|.. +++|..+...     .++++-|-++-
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~-----~~~~~fD~i~s  133 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-----QFDEPVDRIVS  133 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-----GCCCCCSEEEE
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh-----cccccccceee
Confidence            345789999999999999999999876689998877        344444443 4778776542     22455565554


Q ss_pred             e
Q 035595          148 A  148 (178)
Q Consensus       148 ~  148 (178)
                      +
T Consensus       134 i  134 (285)
T d1kpga_         134 I  134 (285)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.72  E-value=1.8e-05  Score=63.21  Aligned_cols=54  Identities=11%  Similarity=0.124  Sum_probs=40.1

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeeccc------ccccCCCcceEEEEcccc
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDG------EYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~------k~~~~g~~N~~F~~~~~~  131 (178)
                      ...+.++|||||||+|..+.-|+.... +++++|++.      +....+..|+.|..+...
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~  126 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDGT  126 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGG
T ss_pred             hhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcccccccccCchh
Confidence            446788999999999999887777664 899999661      112235678999987653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=2.9e-05  Score=63.85  Aligned_cols=68  Identities=7%  Similarity=0.044  Sum_probs=48.0

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ...+..+|||||||.|++++-++.....++++++++        +++...|..+ +.|.....     +..+++-|.||-
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~-----~~~~~~fD~i~s  132 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW-----EEFDEPVDRIVS  132 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG-----GGCCCCCSEEEE
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc-----cccccccceEee
Confidence            345789999999999999999998766688999977        3445556655 56655432     123566776665


Q ss_pred             ee
Q 035595          148 AN  149 (178)
Q Consensus       148 ~n  149 (178)
                      +.
T Consensus       133 ie  134 (291)
T d1kpia_         133 LG  134 (291)
T ss_dssp             ES
T ss_pred             ch
Confidence            44

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.3e-05  Score=65.96  Aligned_cols=62  Identities=15%  Similarity=0.058  Sum_probs=46.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEccc-----------ccCCCCCCC
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGE-----------YYSNCPAVS  139 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~-----------~~s~~p~~~  139 (178)
                      .+.+|||+|||+|-.++-|+... +.+++|+|++        ..+...|..|+.|.....           ..|+||-++
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi~  187 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID  187 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhhh
Confidence            45689999999999999998865 5689999988        333445777899988655           226667665


Q ss_pred             CC
Q 035595          140 GS  141 (178)
Q Consensus       140 ~s  141 (178)
                      .+
T Consensus       188 ~~  189 (274)
T d2b3ta1         188 EQ  189 (274)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3e-05  Score=60.63  Aligned_cols=34  Identities=6%  Similarity=-0.105  Sum_probs=26.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh-------hheeeeecc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK-------MKILASLVD  112 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~-------~~i~AtD~s  112 (178)
                      .+..+|||||||+|.....|+....       ..++++|.+
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s   79 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS   79 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCc
Confidence            3456899999999999999987531       246888876

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1.5e-05  Score=61.66  Aligned_cols=34  Identities=6%  Similarity=-0.099  Sum_probs=28.4

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      ....+|||||||+|.++.-++.....+++++|++
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s   85 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECN   85 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCC
Confidence            3467999999999999999988643478999977

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=3.8e-05  Score=61.78  Aligned_cols=66  Identities=11%  Similarity=-0.028  Sum_probs=45.2

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------cccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +.++|||||||+|-.++-++..-..+++|+|.++.        ..+....++.|...... .++ --.++.|+||-
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~-~l~-~~~~~~D~Ivs  108 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE-EVH-LPVEKVDVIIS  108 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TSC-CSCSCEEEEEE
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHH-Hhc-CccccceEEEE
Confidence            45789999999999999888864448999997721        23445566888875542 111 11467788764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.63  E-value=2.7e-05  Score=61.82  Aligned_cols=56  Identities=14%  Similarity=0.059  Sum_probs=44.4

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      +...+..+|||||||+|-.+.-|+.-++.+++++++.        +...+.|..|+.|..++..
T Consensus        74 L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~  137 (215)
T d1jg1a_          74 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS  137 (215)
T ss_dssp             HTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             hccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccc
Confidence            3446788999999999999998887665568888755        5556679999999997764

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=3.6e-05  Score=62.26  Aligned_cols=67  Identities=18%  Similarity=0.064  Sum_probs=49.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcc-eEEEEcccccCCCCCCCCCcceEeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCPAVSGSQNYVILA  148 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p~~~~s~~~vil~  148 (178)
                      .+..+||++|||+|..+++++...+-+++|+|++        +.+..+|+.+ +.+..++.. .+++  ++..|.|||-
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~-~~~~--~~~~D~Ii~~  181 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR-DFPG--ENIADRILMG  181 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT-TCCC--CSCEEEEEEC
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchH-Hhcc--CCCCCEEEEC
Confidence            4678999999999999999998764589999977        4455668776 788776654 2322  4567877764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.50  E-value=7.9e-05  Score=57.65  Aligned_cols=33  Identities=21%  Similarity=0.172  Sum_probs=27.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      ...+||++|||+|..++.++.....+++|+|++
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~   78 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVD   78 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCc
Confidence            357899999999999988777654589999988

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=7.5e-05  Score=60.56  Aligned_cols=66  Identities=9%  Similarity=-0.060  Sum_probs=44.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------ccccCCCc-ceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG-------EYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~-------k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +.++|||||||+|..++-++..-..+++|+|.+.       ....+|.. ++.|..+... .++ .-.++.|++|.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~-~~~-~~~~~~D~ivs  106 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVE-EVE-LPVEKVDIIIS  106 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTT-TCC-CSSSCEEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHH-Hcc-cccceeEEEee
Confidence            4678999999999999888876434899999772       22334444 4888876553 221 11357777764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.48  E-value=6.4e-05  Score=61.04  Aligned_cols=67  Identities=13%  Similarity=0.123  Sum_probs=45.2

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCC-cceEEEEcccccCCCCCC-CCCcc
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGH-ENFSFLVDGEYYSNCPAV-SGSQN  143 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~-~N~~F~~~~~~~s~~p~~-~~s~~  143 (178)
                      +...+.++|||+|||+|+++..|+...  .-+++++|++        ++....|. .++.+......    .++ ..+.|
T Consensus        99 l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~----~~~~~~~~D  174 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS----EGFDEKDVD  174 (266)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG----GCCSCCSEE
T ss_pred             hCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc----cccccccee
Confidence            344678999999999999999999865  3579999977        23334454 45666654432    223 44555


Q ss_pred             eEe
Q 035595          144 YVI  146 (178)
Q Consensus       144 ~vi  146 (178)
                      .|+
T Consensus       175 ~V~  177 (266)
T d1o54a_         175 ALF  177 (266)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=8.7e-05  Score=60.35  Aligned_cols=65  Identities=11%  Similarity=0.012  Sum_probs=44.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc-------ccccCCC-cceEEEEcccccCCCCCC-CCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG-------EYYNNGH-ENFSFLVDGEYYSNCPAV-SGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~-------k~~~~g~-~N~~F~~~~~~~s~~p~~-~~s~~~vil  147 (178)
                      +..+||+||||+|-.++.++..-..+++|+|.+.       .....+. .++.|..+... .++  + +++.|++|.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~-~l~--~~~~~~D~i~s  111 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE-DVH--LPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TSC--CSSSCEEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehh-hcc--CcccceeEEEE
Confidence            4679999999999999988876545899999772       2233343 45888876542 221  2 467787764

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.43  E-value=0.00011  Score=58.20  Aligned_cols=67  Identities=10%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeecc-------cccccCCCc-ceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD-------GEYYNNGHE-NFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s-------~k~~~~g~~-N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+||+||||+|..+..|+... ..+.+..|..       ++....|.. ++.|.......+    +|.+.|++++.+
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~----~p~~~D~v~~~~  155 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP----LPVTADVVLLSF  155 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC----CSCCEEEEEEES
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeecccc----ccccchhhhccc
Confidence            455789999999999999999875 4567777854       334455554 488887665422    445689988875

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=2.1e-05  Score=64.02  Aligned_cols=72  Identities=10%  Similarity=0.021  Sum_probs=48.7

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhhhheeeeecccccc------cCCCcceEEEEcccccCCCCCC--CCCcceEeeee
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYY------NNGHENFSFLVDGEYYSNCPAV--SGSQNYVILAN  149 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~------~~g~~N~~F~~~~~~~s~~p~~--~~s~~~vil~n  149 (178)
                      ..+.+.|||||||+|...-.|+...+ +++|++++.+.+      .....|+.+..++...--++.+  .....+.|+.|
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~~~~~~~~vvgN   97 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGN   97 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccccccCCCeEEEec
Confidence            34678999999999999999999876 899998773321      1234678888877742222222  11244666677


Q ss_pred             h
Q 035595          150 L  150 (178)
Q Consensus       150 l  150 (178)
                      |
T Consensus        98 l   98 (252)
T d1qyra_          98 L   98 (252)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.30  E-value=8.6e-05  Score=59.99  Aligned_cols=63  Identities=17%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      +..+|||+|||+|..++-++... .+++|+|++        +++..+|+. ..|..+.....++   .++.|+|+.
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~~~---~~~fD~V~a  190 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP---FGPFDLLVA  190 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG---GCCEEEEEE
T ss_pred             ccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCc-eeEEecccccccc---ccccchhhh
Confidence            46799999999999998777655 479999987        333445664 4666654431111   357787653

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00012  Score=57.55  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=27.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD  112 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s  112 (178)
                      .+.++|||||||+|-.+.-|+..+  ...++++|+.
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~  110 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHI  110 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCC
Confidence            577899999999999888777754  3478999966

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=0.00015  Score=59.75  Aligned_cols=64  Identities=9%  Similarity=-0.026  Sum_probs=48.0

Q ss_pred             CCccccc---ccccccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           66 GKFFKFT---AELSNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        66 ~~FFKdR---PEL~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      ..||-|.   ..+.......+||+++||+|..++.++...+ +++++|++        +.+..+|+.|++|.+...
T Consensus       128 tG~flDqr~~r~~~~~~~g~rVLDl~~gtG~~s~~~a~g~~-~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~  202 (318)
T d1wxxa2         128 TGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFR-EVVAVDSSAEALRRAEENARLNGLGNVRVLEANA  202 (318)
T ss_dssp             CCCCGGGHHHHHHGGGCCEEEEEEETCTTTHHHHHHHHHEE-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH
T ss_pred             cccchhhhhhHHHHHHhCCCeeeccCCCCcHHHHHHHhcCC-cEEeecchHHHHHHHHHHHHHcCCCCcceeeccH
Confidence            3566664   2333334568999999999999999887665 89999977        444667899999988765

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.17  E-value=6.3e-05  Score=55.35  Aligned_cols=51  Identities=14%  Similarity=-0.007  Sum_probs=37.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccc--------ccCCCcc-eEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEY--------YNNGHEN-FSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~--------~~~g~~N-~~F~~~~~  130 (178)
                      ...+|||+|||||+.++..+..-..+++++|.+.++        ...+..+ +.+.++..
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~   73 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA   73 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccc
Confidence            467999999999999998876543489999977332        3335544 77777655

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00027  Score=58.06  Aligned_cols=53  Identities=8%  Similarity=0.024  Sum_probs=39.0

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh-hheeeeecccccc-----------------cCCCcceEEEEcccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK-MKILASLVDGEYY-----------------NNGHENFSFLVDGEY  131 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s~k~~-----------------~~g~~N~~F~~~~~~  131 (178)
                      .+.++|||+|||+|..++.++.... .+++++|++....                 .-...++.|..+...
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            5678999999999999999987642 3689999772211                 124557889887653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00019  Score=62.16  Aligned_cols=34  Identities=6%  Similarity=-0.041  Sum_probs=29.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhh-hheeeeecc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIK-MKILASLVD  112 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s  112 (178)
                      .+.++||+||||+|++++.++.... -+++++|++
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS  249 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIM  249 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECC
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCC
Confidence            5788999999999999999998753 278999977

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.95  E-value=0.00028  Score=55.81  Aligned_cols=54  Identities=19%  Similarity=0.075  Sum_probs=38.2

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhhh-------hheeeeecccccc-------------cCCCcceEEEEcccc
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVIK-------MKILASLVDGEYY-------------NNGHENFSFLVDGEY  131 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~~-------~~i~AtD~s~k~~-------------~~g~~N~~F~~~~~~  131 (178)
                      ..+..+|||||||+|-.+.-|+.-++       .+++++|+.++..             ..+..|+.|...+..
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~  151 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGR  151 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccc
Confidence            35789999999999998888876553       2588888663221             225668888886653

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00086  Score=55.11  Aligned_cols=69  Identities=16%  Similarity=0.118  Sum_probs=46.7

Q ss_pred             ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------ccc-CCCcceEEEEcccccCCCCCCCCCcceEee
Q 035595           77 NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYN-NGHENFSFLVDGEYYSNCPAVSGSQNYVIL  147 (178)
Q Consensus        77 ~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~-~g~~N~~F~~~~~~~s~~p~~~~s~~~vil  147 (178)
                      ...+.++|||||||+|.....|+...+ +++|+.++.+        ... ....|+.+..++...--.   +  ..+.|+
T Consensus        18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~---~--~~~~vV   91 (278)
T d1zq9a1          18 ALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL---P--FFDTCV   91 (278)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC---C--CCSEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh---h--hhhhhh
Confidence            345678999999999999999999875 8888876622        111 224678888877743211   1  224566


Q ss_pred             eehh
Q 035595          148 ANLK  151 (178)
Q Consensus       148 ~nl~  151 (178)
                      .||=
T Consensus        92 ~NLP   95 (278)
T d1zq9a1          92 ANLP   95 (278)
T ss_dssp             EECC
T ss_pred             cchH
Confidence            7763

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0026  Score=50.48  Aligned_cols=33  Identities=15%  Similarity=0.102  Sum_probs=28.0

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s  112 (178)
                      ...++||+|||+|-.++-|+... +.+++|+|++
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~   94 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVD   94 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecC
Confidence            34689999999999998888764 5689999987

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00065  Score=51.36  Aligned_cols=51  Identities=12%  Similarity=-0.089  Sum_probs=37.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      ...+||+++||+|+.++..+..-..+++++|.+        +.....+..|+.+.....
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~  101 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA  101 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecc
Confidence            457899999999999998877544488999966        222334677777776554

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.0012  Score=53.87  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=28.6

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      +..+||++|||+|-.++-++...+.+++|+|++
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis  142 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVS  142 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESC
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhh
Confidence            457899999999999888887666789999988

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.33  E-value=0.0047  Score=48.24  Aligned_cols=65  Identities=9%  Similarity=-0.055  Sum_probs=44.1

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeecccccc-cCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEYY-NNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~~-~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      +..+||+||||+|..+..|+... ..+.+..|...-.. .....++.|..+....+.|.     -|+++|.+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~-----ad~~~l~~  147 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPK-----ADAVFMKW  147 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCC-----CSCEECSS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCC-----cceEEEEE
Confidence            35689999999999999999875 45666677543222 22335688988776545443     35666655

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.06  E-value=0.0016  Score=50.66  Aligned_cols=70  Identities=10%  Similarity=0.005  Sum_probs=47.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeecc--------cccccCCCcc-eEEEEcccccCCCC----CCCCCcc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVD--------GEYYNNGHEN-FSFLVDGEYYSNCP----AVSGSQN  143 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s--------~k~~~~g~~N-~~F~~~~~~~s~~p----~~~~s~~  143 (178)
                      ..+.+|||+|||+|.+++-++...  .-+++++|.+        +.....|..+ |+|..+.....+|.    .-.+..|
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            467899999999999999998763  3488999976        2234557654 88888766322221    1134567


Q ss_pred             eEeee
Q 035595          144 YVILA  148 (178)
Q Consensus       144 ~vil~  148 (178)
                      ++.|-
T Consensus       135 ~ifiD  139 (214)
T d2cl5a1         135 MVFLD  139 (214)
T ss_dssp             EEEEC
T ss_pred             eeeec
Confidence            66654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.98  E-value=0.0025  Score=52.13  Aligned_cols=65  Identities=14%  Similarity=0.085  Sum_probs=46.2

Q ss_pred             CCccccc-c---cccc-cCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCCc-ceEEEEccc
Q 035595           66 GKFFKFT-A---ELSN-CHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGHE-NFSFLVDGE  130 (178)
Q Consensus        66 ~~FFKdR-P---EL~~-~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~~-N~~F~~~~~  130 (178)
                      ..||-|. +   -+.. ..+..+||++|||||..++.++..-..+++++|++        +.+..+|+. ++.|.++..
T Consensus       126 tG~flDqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~  204 (324)
T d2as0a2         126 TGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA  204 (324)
T ss_dssp             SCCCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cCcccchhhHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechh
Confidence            4566666 1   1222 24678999999999999999887643489999977        344556774 588888654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.98  E-value=0.0036  Score=46.03  Aligned_cols=39  Identities=8%  Similarity=0.147  Sum_probs=29.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccccccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDGEYYN  117 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~k~~~  117 (178)
                      ....+|||.|||+|+.+..++...  ...+++.|++..+..
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~   58 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD   58 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh
Confidence            456799999999999999888653  235889998865543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.74  E-value=0.008  Score=47.51  Aligned_cols=66  Identities=9%  Similarity=-0.074  Sum_probs=43.8

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc-ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY-YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~-~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      .+..+||+||||+|..+..|+... ..+.+..|..+-. ......+++|.......+.|+     .|+++|.+
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~-----~D~~~l~~  147 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQ-----GDAMILKA  147 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCC-----EEEEEEES
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCccccccc-----ceEEEEeh
Confidence            345789999999999999999875 3445555543211 122346789988776544442     38888765

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0024  Score=50.22  Aligned_cols=74  Identities=9%  Similarity=0.069  Sum_probs=50.5

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCcc-eEEEEcccccCCC----CCCCCCcc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHEN-FSFLVDGEYYSNC----PAVSGSQN  143 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~N-~~F~~~~~~~s~~----p~~~~s~~  143 (178)
                      ..+.+|||||||+|-+++-++...  +.+++++|.+.        .....|..+ +.+..+.....++    .+..++-|
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            468899999999999999999864  45889998662        223346655 7888776633332    22356677


Q ss_pred             eEeeeehhh
Q 035595          144 YVILANLKS  152 (178)
Q Consensus       144 ~vil~nl~~  152 (178)
                      +|.+-.-|+
T Consensus       138 ~ifiD~dk~  146 (219)
T d2avda1         138 VAVVDADKE  146 (219)
T ss_dssp             EEEECSCST
T ss_pred             EEEEeCCHH
Confidence            776654443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.67  E-value=0.0026  Score=47.49  Aligned_cols=32  Identities=9%  Similarity=-0.122  Sum_probs=26.8

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      ...+||++|||+|..++..+..-. +++++|.+
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~   72 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKD   72 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCC
T ss_pred             CCCeEEEeccccchhhhhhhhccc-hhhhcccC
Confidence            456899999999999998877654 78889977

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.21  E-value=0.02  Score=45.01  Aligned_cols=65  Identities=14%  Similarity=0.067  Sum_probs=43.7

Q ss_pred             CCceeEeeccCCchhHHHhHHhh-hhheeeeeccccc-ccCCCcceEEEEcccccCCCCCCCCCcceEeeee
Q 035595           80 EAALDAKGNFGNGSLIADFSVVI-KMKILASLVDGEY-YNNGHENFSFLVDGEYYSNCPAVSGSQNYVILAN  149 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s~k~-~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~n  149 (178)
                      ...+||+||||+|..+.-++... ..+.+-.|..+-. ......+++|.......+.|     ..|+++|.|
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p-----~aD~~~l~~  146 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP-----NADAVLLKY  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCC-----CCSEEEEES
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCC-----CCcEEEEEe
Confidence            45689999999999999999875 3455555643211 11234679999877653322     358888865

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.92  E-value=0.0032  Score=52.54  Aligned_cols=51  Identities=6%  Similarity=-0.127  Sum_probs=38.9

Q ss_pred             CCCceeEeeccCCchhHHHhHHhhhhheeeeecccc--------cccCCCc--ceEEEEccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVIKMKILASLVDGE--------YYNNGHE--NFSFLVDGE  130 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k--------~~~~g~~--N~~F~~~~~  130 (178)
                      ....+||++.||||..++.++..-. +++++|.+.+        +.-+|..  +++|.+++.
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~  191 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA  191 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCH
Confidence            3567999999999999999888765 7999998822        2334554  488888765

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.33  E-value=0.01  Score=44.75  Aligned_cols=51  Identities=10%  Similarity=-0.024  Sum_probs=36.4

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccccccc--------CCCc-ceEEEEccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDGEYYN--------NGHE-NFSFLVDGE  130 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~k~~~--------~g~~-N~~F~~~~~  130 (178)
                      ...+|||+.||+|+.++..+..-..+++++|.+.++.+        .+.. ++.+.+...
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~  100 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA  100 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Confidence            56899999999999999888765458999997732221        1333 577777554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=93.64  E-value=0.03  Score=45.82  Aligned_cols=65  Identities=11%  Similarity=-0.052  Sum_probs=44.9

Q ss_pred             CCccccc-c---ccc-ccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc--------cccccCCC--cceEEEEccc
Q 035595           66 GKFFKFT-A---ELS-NCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD--------GEYYNNGH--ENFSFLVDGE  130 (178)
Q Consensus        66 ~~FFKdR-P---EL~-~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s--------~k~~~~g~--~N~~F~~~~~  130 (178)
                      ..||-|. +   .|. ...+..+||++.||||..++..+..-...++++|.+        +.+..+|.  .+++|.+++.
T Consensus       125 tGlflDqR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~  204 (317)
T d2b78a2         125 TGIFLDQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV  204 (317)
T ss_dssp             CSSCGGGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred             cCCcHHHHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH
Confidence            3577664 2   232 234578999999999999988776544479999977        23334555  4688988776

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.42  E-value=0.019  Score=44.07  Aligned_cols=52  Identities=12%  Similarity=0.059  Sum_probs=38.1

Q ss_pred             cCCCceeEeeccCCchhHHHhHHhh-hhheeeeecc--------cccccCCCcceEEEEccc
Q 035595           78 CHEAALDAKGNFGNGSLIADFSVVI-KMKILASLVD--------GEYYNNGHENFSFLVDGE  130 (178)
Q Consensus        78 ~~~~~~vLEvGCG~Gnta~pll~~~-~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~  130 (178)
                      ..+...+|+++||+|....-|+... ..+++|+|++        ++...- -.++.|..+..
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-~~r~~~~~~~f   81 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-SDRVSLFKVSY   81 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-TTTEEEEECCG
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-cccccchhHHH
Confidence            3577899999999999999999863 5689999977        222111 23577777654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=93.10  E-value=0.049  Score=43.04  Aligned_cols=57  Identities=12%  Similarity=-0.012  Sum_probs=37.6

Q ss_pred             cccccCCCceeEeeccCCchhHHHhHHhh-----hhheeeeeccccc---ccCCCcceEEEEccc
Q 035595           74 ELSNCHEAALDAKGNFGNGSLIADFSVVI-----KMKILASLVDGEY---YNNGHENFSFLVDGE  130 (178)
Q Consensus        74 EL~~~~~~~~vLEvGCG~Gnta~pll~~~-----~~~i~AtD~s~k~---~~~g~~N~~F~~~~~  130 (178)
                      ||.....+.+|||+|++.|.+++-++...     +.+++++|+....   ......++.|.....
T Consensus        74 eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs  138 (232)
T d2bm8a1          74 DMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDC  138 (232)
T ss_dssp             HHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCS
T ss_pred             HHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeeccc
Confidence            44444468899999999998877665432     3478999986221   223346788877543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=92.26  E-value=0.031  Score=44.34  Aligned_cols=35  Identities=11%  Similarity=0.089  Sum_probs=27.3

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh------hhheeeeeccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI------KMKILASLVDG  113 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~------~~~i~AtD~s~  113 (178)
                      .+..+|||.|||+|+.+..++...      ...++|+|++.
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~  156 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDD  156 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCH
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccH
Confidence            456789999999999999988643      22578888763

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.01  E-value=0.017  Score=45.55  Aligned_cols=52  Identities=17%  Similarity=0.105  Sum_probs=37.7

Q ss_pred             CCCceeEeeccCCchhHHHhHHhh--hhheeeeeccc--------ccccCCCcc-eEEEEccc
Q 035595           79 HEAALDAKGNFGNGSLIADFSVVI--KMKILASLVDG--------EYYNNGHEN-FSFLVDGE  130 (178)
Q Consensus        79 ~~~~~vLEvGCG~Gnta~pll~~~--~~~i~AtD~s~--------k~~~~g~~N-~~F~~~~~  130 (178)
                      ..+.+|||+|+|+|-+++-++...  .-+++.++.+.        .....|..+ +++..+.+
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            467899999999999999999764  34788888662        223345554 77777665

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.89  E-value=0.42  Score=38.05  Aligned_cols=58  Identities=12%  Similarity=0.013  Sum_probs=43.3

Q ss_pred             cccccCCCceeEeeccCCchhHHHhHHh--hhhheeeeecc--------cccccCCCcceEEEEcccc
Q 035595           74 ELSNCHEAALDAKGNFGNGSLIADFSVV--IKMKILASLVD--------GEYYNNGHENFSFLVDGEY  131 (178)
Q Consensus        74 EL~~~~~~~~vLEvGCG~Gnta~pll~~--~~~~i~AtD~s--------~k~~~~g~~N~~F~~~~~~  131 (178)
                      .++...+..+||++.||.|+-.+-|+..  .+..++|.|++        +.....|+.|+.+..+...
T Consensus        88 ~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~  155 (293)
T d2b9ea1          88 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFL  155 (293)
T ss_dssp             HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGG
T ss_pred             cccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhh
Confidence            4445567789999999999988878764  34578999976        3445668999888876553

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=86.43  E-value=0.16  Score=37.67  Aligned_cols=34  Identities=21%  Similarity=0.043  Sum_probs=27.9

Q ss_pred             CCceeEeeccCCchhHHHhHHhhhhheeeeeccc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIKMKILASLVDG  113 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s~  113 (178)
                      ...+||++-||||+.++.-+..-..+++.+|.+.
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~   76 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDK   76 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCH
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeeccc
Confidence            4568999999999999999976545888888663

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.80  E-value=0.21  Score=40.56  Aligned_cols=33  Identities=15%  Similarity=-0.218  Sum_probs=26.5

Q ss_pred             CCceeEeeccCCchhHHHhHHhhh-hheeeeecc
Q 035595           80 EAALDAKGNFGNGSLIADFSVVIK-MKILASLVD  112 (178)
Q Consensus        80 ~~~~vLEvGCG~Gnta~pll~~~~-~~i~AtD~s  112 (178)
                      ....|||||.|.|....-|+...+ .+++|++.+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D   76 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKR   76 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECC
Confidence            467899999999999999997632 367887755

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.17  E-value=0.27  Score=39.13  Aligned_cols=37  Identities=8%  Similarity=-0.041  Sum_probs=28.7

Q ss_pred             cccCCCceeEeeccCCchhHHHhHHhhhhheeeeecc
Q 035595           76 SNCHEAALDAKGNFGNGSLIADFSVVIKMKILASLVD  112 (178)
Q Consensus        76 ~~~~~~~~vLEvGCG~Gnta~pll~~~~~~i~AtD~s  112 (178)
                      .....+.+||-||+|.|.++.-++.....++.+++++
T Consensus        68 ~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD  104 (276)
T d1mjfa_          68 LAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEID  104 (276)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESC
T ss_pred             hcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCC
Confidence            3445678999999999999999887643467777755

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=81.92  E-value=1.3  Score=33.98  Aligned_cols=72  Identities=14%  Similarity=-0.076  Sum_probs=47.8

Q ss_pred             CceeEeeccCCchhHHHhHHh-hhhheeeeecccc--------cccCCCcceEEEEcccccCCCCCCCCCcceEeeeehh
Q 035595           81 AALDAKGNFGNGSLIADFSVV-IKMKILASLVDGE--------YYNNGHENFSFLVDGEYYSNCPAVSGSQNYVILANLK  151 (178)
Q Consensus        81 ~~~vLEvGCG~Gnta~pll~~-~~~~i~AtD~s~k--------~~~~g~~N~~F~~~~~~~s~~p~~~~s~~~vil~nl~  151 (178)
                      ...||++|+|.|==++||+-. .+.+++-+|.++|        ...-|..|+.+..+-.. ...+  ..+.|+|+--.++
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E-~~~~--~~~fD~V~sRA~~  142 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVE-EFPS--EPPFDGVISRAFA  142 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTT-TSCC--CSCEEEEECSCSS
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchh-hhcc--ccccceehhhhhc
Confidence            458999999999999999975 3457888885522        23447788887765443 1211  2356777765555


Q ss_pred             hhhh
Q 035595          152 SYRR  155 (178)
Q Consensus       152 ~~~~  155 (178)
                      +...
T Consensus       143 ~~~~  146 (207)
T d1jsxa_         143 SLND  146 (207)
T ss_dssp             SHHH
T ss_pred             CHHH
Confidence            5443